Multiple sequence alignment - TraesCS7B01G063200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G063200 chr7B 100.000 2998 0 0 1 2998 67947445 67950442 0.000000e+00 5537.0
1 TraesCS7B01G063200 chr7B 97.403 154 4 0 2845 2998 67908592 67908745 2.290000e-66 263.0
2 TraesCS7B01G063200 chrUn 99.075 2163 12 1 1 2155 85099060 85101222 0.000000e+00 3877.0
3 TraesCS7B01G063200 chrUn 99.199 1499 4 2 1 1499 249237342 249235852 0.000000e+00 2695.0
4 TraesCS7B01G063200 chrUn 99.284 698 3 1 2155 2850 375805069 375805766 0.000000e+00 1260.0
5 TraesCS7B01G063200 chrUn 98.714 700 5 1 2155 2850 85101249 85101948 0.000000e+00 1240.0
6 TraesCS7B01G063200 chrUn 99.809 523 1 0 1633 2155 375804520 375805042 0.000000e+00 961.0
7 TraesCS7B01G063200 chr7D 91.014 1302 64 19 953 2240 109006856 109008118 0.000000e+00 1707.0
8 TraesCS7B01G063200 chr7D 87.549 506 42 13 2287 2778 109008119 109008617 1.560000e-157 566.0
9 TraesCS7B01G063200 chr7D 90.476 231 11 5 640 860 109006602 109006831 8.130000e-76 294.0
10 TraesCS7B01G063200 chr7D 93.038 158 8 2 481 636 109006406 109006562 8.360000e-56 228.0
11 TraesCS7B01G063200 chr7D 78.402 338 45 12 2 320 160016759 160016431 8.480000e-46 195.0
12 TraesCS7B01G063200 chr7D 95.652 46 1 1 2909 2954 7803293 7803337 4.150000e-09 73.1
13 TraesCS7B01G063200 chr7A 84.198 1310 98 42 953 2240 113626178 113627400 0.000000e+00 1171.0
14 TraesCS7B01G063200 chr7A 88.924 641 61 3 1097 1737 114020117 114020747 0.000000e+00 782.0
15 TraesCS7B01G063200 chr7A 81.785 829 61 19 1425 2240 114020767 114021518 1.980000e-171 612.0
16 TraesCS7B01G063200 chr7A 87.917 240 11 11 708 935 114019756 114019989 1.770000e-67 267.0
17 TraesCS7B01G063200 chr7A 86.036 222 19 7 2287 2498 114021519 114021738 8.360000e-56 228.0
18 TraesCS7B01G063200 chr7A 92.357 157 8 1 484 636 113625598 113625754 1.400000e-53 220.0
19 TraesCS7B01G063200 chr7A 91.667 156 10 1 481 636 114019213 114019365 2.340000e-51 213.0
20 TraesCS7B01G063200 chr7A 89.209 139 12 1 2721 2859 114021736 114021871 1.430000e-38 171.0
21 TraesCS7B01G063200 chr7A 95.652 92 4 0 2407 2498 113628471 113628562 6.700000e-32 148.0
22 TraesCS7B01G063200 chr7A 85.294 136 10 8 2287 2415 113627401 113627533 6.740000e-27 132.0
23 TraesCS7B01G063200 chr7A 83.784 148 12 6 2721 2859 113628560 113628704 2.430000e-26 130.0
24 TraesCS7B01G063200 chr3D 80.539 334 44 9 2 319 580978247 580978575 1.390000e-58 237.0
25 TraesCS7B01G063200 chr1D 79.130 345 40 17 2 324 22165037 22164703 3.030000e-50 209.0
26 TraesCS7B01G063200 chr1D 81.028 253 40 6 74 322 422064470 422064222 8.480000e-46 195.0
27 TraesCS7B01G063200 chr1D 95.556 45 1 1 2908 2952 146148266 146148223 1.490000e-08 71.3
28 TraesCS7B01G063200 chr1D 88.889 45 4 1 2909 2953 427488963 427489006 2.000000e-03 54.7
29 TraesCS7B01G063200 chr2D 78.402 338 45 12 2 320 436017254 436016926 8.480000e-46 195.0
30 TraesCS7B01G063200 chr6D 78.042 337 51 9 3 320 472371679 472372011 1.100000e-44 191.0
31 TraesCS7B01G063200 chr5B 81.526 249 31 9 74 318 478558911 478559148 1.100000e-44 191.0
32 TraesCS7B01G063200 chr6B 95.833 48 1 1 2908 2955 48526748 48526794 3.200000e-10 76.8
33 TraesCS7B01G063200 chr3B 95.349 43 1 1 2912 2954 43817242 43817201 1.930000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G063200 chr7B 67947445 67950442 2997 False 5537.000000 5537 100.000000 1 2998 1 chr7B.!!$F2 2997
1 TraesCS7B01G063200 chrUn 249235852 249237342 1490 True 2695.000000 2695 99.199000 1 1499 1 chrUn.!!$R1 1498
2 TraesCS7B01G063200 chrUn 85099060 85101948 2888 False 2558.500000 3877 98.894500 1 2850 2 chrUn.!!$F1 2849
3 TraesCS7B01G063200 chrUn 375804520 375805766 1246 False 1110.500000 1260 99.546500 1633 2850 2 chrUn.!!$F2 1217
4 TraesCS7B01G063200 chr7D 109006406 109008617 2211 False 698.750000 1707 90.519250 481 2778 4 chr7D.!!$F2 2297
5 TraesCS7B01G063200 chr7A 114019213 114021871 2658 False 378.833333 782 87.589667 481 2859 6 chr7A.!!$F2 2378
6 TraesCS7B01G063200 chr7A 113625598 113628704 3106 False 360.200000 1171 88.257000 484 2859 5 chr7A.!!$F1 2375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 2407 2.039084 GCGGATATCCTCCCAGTTCATT 59.961 50.0 19.61 0.0 41.49 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2869 4790 0.034574 TTGATTCCCCGTCACATGGG 60.035 55.0 0.0 0.0 44.35 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1499 2407 2.039084 GCGGATATCCTCCCAGTTCATT 59.961 50.000 19.61 0.00 41.49 2.57
2654 4566 6.088749 TGTCGTTCAATTGATTTTATTTGGCG 59.911 34.615 9.40 2.47 0.00 5.69
2690 4602 4.599047 CCTGAGTGCTAACTGATACGTAC 58.401 47.826 0.00 0.00 36.52 3.67
2861 4782 3.831911 TGATGGAGAATCAAAAACCCACC 59.168 43.478 0.00 0.00 42.49 4.61
2862 4783 3.320610 TGGAGAATCAAAAACCCACCA 57.679 42.857 0.00 0.00 36.25 4.17
2863 4784 3.647636 TGGAGAATCAAAAACCCACCAA 58.352 40.909 0.00 0.00 36.25 3.67
2864 4785 4.230455 TGGAGAATCAAAAACCCACCAAT 58.770 39.130 0.00 0.00 36.25 3.16
2865 4786 5.398236 TGGAGAATCAAAAACCCACCAATA 58.602 37.500 0.00 0.00 36.25 1.90
2866 4787 5.841237 TGGAGAATCAAAAACCCACCAATAA 59.159 36.000 0.00 0.00 36.25 1.40
2867 4788 6.500049 TGGAGAATCAAAAACCCACCAATAAT 59.500 34.615 0.00 0.00 36.25 1.28
2868 4789 7.017056 TGGAGAATCAAAAACCCACCAATAATT 59.983 33.333 0.00 0.00 36.25 1.40
2869 4790 7.549134 GGAGAATCAAAAACCCACCAATAATTC 59.451 37.037 0.00 0.00 36.25 2.17
2870 4791 7.394016 AGAATCAAAAACCCACCAATAATTCC 58.606 34.615 0.00 0.00 0.00 3.01
2871 4792 5.491323 TCAAAAACCCACCAATAATTCCC 57.509 39.130 0.00 0.00 0.00 3.97
2872 4793 4.907875 TCAAAAACCCACCAATAATTCCCA 59.092 37.500 0.00 0.00 0.00 4.37
2873 4794 5.549619 TCAAAAACCCACCAATAATTCCCAT 59.450 36.000 0.00 0.00 0.00 4.00
2874 4795 5.434182 AAAACCCACCAATAATTCCCATG 57.566 39.130 0.00 0.00 0.00 3.66
2875 4796 3.774842 ACCCACCAATAATTCCCATGT 57.225 42.857 0.00 0.00 0.00 3.21
2876 4797 3.373830 ACCCACCAATAATTCCCATGTG 58.626 45.455 0.00 0.00 0.00 3.21
2877 4798 3.012274 ACCCACCAATAATTCCCATGTGA 59.988 43.478 0.00 0.00 0.00 3.58
2878 4799 3.384467 CCCACCAATAATTCCCATGTGAC 59.616 47.826 0.00 0.00 0.00 3.67
2879 4800 3.066621 CCACCAATAATTCCCATGTGACG 59.933 47.826 0.00 0.00 0.00 4.35
2880 4801 3.066621 CACCAATAATTCCCATGTGACGG 59.933 47.826 0.00 0.00 0.00 4.79
2881 4802 2.622942 CCAATAATTCCCATGTGACGGG 59.377 50.000 0.00 0.00 46.03 5.28
2882 4803 2.622942 CAATAATTCCCATGTGACGGGG 59.377 50.000 5.84 5.84 44.62 5.73
2888 4809 3.568000 CCATGTGACGGGGAATCAA 57.432 52.632 0.00 0.00 0.00 2.57
2889 4810 1.832883 CCATGTGACGGGGAATCAAA 58.167 50.000 0.00 0.00 0.00 2.69
2890 4811 2.166829 CCATGTGACGGGGAATCAAAA 58.833 47.619 0.00 0.00 0.00 2.44
2891 4812 2.560542 CCATGTGACGGGGAATCAAAAA 59.439 45.455 0.00 0.00 0.00 1.94
2892 4813 3.574614 CATGTGACGGGGAATCAAAAAC 58.425 45.455 0.00 0.00 0.00 2.43
2893 4814 1.957877 TGTGACGGGGAATCAAAAACC 59.042 47.619 0.00 0.00 0.00 3.27
2894 4815 1.271379 GTGACGGGGAATCAAAAACCC 59.729 52.381 0.00 0.00 42.58 4.11
2898 4819 1.623163 GGGGAATCAAAAACCCGTCA 58.377 50.000 0.00 0.00 44.09 4.35
2899 4820 1.271379 GGGGAATCAAAAACCCGTCAC 59.729 52.381 0.00 0.00 44.09 3.67
2900 4821 2.235891 GGGAATCAAAAACCCGTCACT 58.764 47.619 0.00 0.00 34.03 3.41
2901 4822 3.414269 GGGAATCAAAAACCCGTCACTA 58.586 45.455 0.00 0.00 34.03 2.74
2902 4823 3.822167 GGGAATCAAAAACCCGTCACTAA 59.178 43.478 0.00 0.00 34.03 2.24
2903 4824 4.082949 GGGAATCAAAAACCCGTCACTAAG 60.083 45.833 0.00 0.00 34.03 2.18
2904 4825 4.758165 GGAATCAAAAACCCGTCACTAAGA 59.242 41.667 0.00 0.00 0.00 2.10
2905 4826 5.414765 GGAATCAAAAACCCGTCACTAAGAT 59.585 40.000 0.00 0.00 0.00 2.40
2906 4827 5.880054 ATCAAAAACCCGTCACTAAGATG 57.120 39.130 0.00 0.00 0.00 2.90
2907 4828 4.710324 TCAAAAACCCGTCACTAAGATGT 58.290 39.130 0.00 0.00 0.00 3.06
2908 4829 5.127491 TCAAAAACCCGTCACTAAGATGTT 58.873 37.500 0.00 0.00 0.00 2.71
2909 4830 6.289834 TCAAAAACCCGTCACTAAGATGTTA 58.710 36.000 0.00 0.00 0.00 2.41
2910 4831 6.203338 TCAAAAACCCGTCACTAAGATGTTAC 59.797 38.462 0.00 0.00 0.00 2.50
2911 4832 3.881937 ACCCGTCACTAAGATGTTACC 57.118 47.619 0.00 0.00 0.00 2.85
2912 4833 2.165030 ACCCGTCACTAAGATGTTACCG 59.835 50.000 0.00 0.00 0.00 4.02
2913 4834 2.424601 CCCGTCACTAAGATGTTACCGA 59.575 50.000 0.00 0.00 0.00 4.69
2914 4835 3.119388 CCCGTCACTAAGATGTTACCGAA 60.119 47.826 0.00 0.00 0.00 4.30
2915 4836 4.487948 CCGTCACTAAGATGTTACCGAAA 58.512 43.478 0.00 0.00 0.00 3.46
2916 4837 4.925054 CCGTCACTAAGATGTTACCGAAAA 59.075 41.667 0.00 0.00 0.00 2.29
2917 4838 5.406175 CCGTCACTAAGATGTTACCGAAAAA 59.594 40.000 0.00 0.00 0.00 1.94
2918 4839 6.400727 CCGTCACTAAGATGTTACCGAAAAAG 60.401 42.308 0.00 0.00 0.00 2.27
2919 4840 6.400727 CGTCACTAAGATGTTACCGAAAAAGG 60.401 42.308 0.00 0.00 37.30 3.11
2920 4841 5.410439 TCACTAAGATGTTACCGAAAAAGGC 59.590 40.000 0.00 0.00 33.69 4.35
2921 4842 5.411669 CACTAAGATGTTACCGAAAAAGGCT 59.588 40.000 0.00 0.00 33.69 4.58
2922 4843 6.002082 ACTAAGATGTTACCGAAAAAGGCTT 58.998 36.000 0.00 0.00 33.69 4.35
2923 4844 5.784578 AAGATGTTACCGAAAAAGGCTTT 57.215 34.783 6.68 6.68 33.69 3.51
2924 4845 6.887626 AAGATGTTACCGAAAAAGGCTTTA 57.112 33.333 13.77 0.00 33.69 1.85
2925 4846 6.250344 AGATGTTACCGAAAAAGGCTTTAC 57.750 37.500 13.77 9.65 33.69 2.01
2926 4847 4.471157 TGTTACCGAAAAAGGCTTTACG 57.529 40.909 23.08 23.08 33.69 3.18
2927 4848 3.228749 GTTACCGAAAAAGGCTTTACGC 58.771 45.455 23.99 12.73 38.13 4.42
2941 4862 5.868043 GCTTTACGCCCCGTTTTATATAT 57.132 39.130 0.00 0.00 41.54 0.86
2942 4863 6.966435 GCTTTACGCCCCGTTTTATATATA 57.034 37.500 0.00 0.00 41.54 0.86
2943 4864 7.363205 GCTTTACGCCCCGTTTTATATATAA 57.637 36.000 0.81 0.81 41.54 0.98
2944 4865 7.805700 GCTTTACGCCCCGTTTTATATATAAA 58.194 34.615 12.90 12.90 41.54 1.40
2945 4866 7.959109 GCTTTACGCCCCGTTTTATATATAAAG 59.041 37.037 15.65 7.49 41.54 1.85
2946 4867 5.868043 ACGCCCCGTTTTATATATAAAGC 57.132 39.130 17.54 17.54 36.35 3.51
2947 4868 5.307204 ACGCCCCGTTTTATATATAAAGCA 58.693 37.500 23.58 8.55 36.35 3.91
2948 4869 5.764192 ACGCCCCGTTTTATATATAAAGCAA 59.236 36.000 23.58 7.98 36.35 3.91
2949 4870 6.081693 CGCCCCGTTTTATATATAAAGCAAC 58.918 40.000 23.58 15.91 34.42 4.17
2950 4871 6.384224 GCCCCGTTTTATATATAAAGCAACC 58.616 40.000 23.58 10.73 34.42 3.77
2951 4872 6.016108 GCCCCGTTTTATATATAAAGCAACCA 60.016 38.462 23.58 6.83 34.42 3.67
2952 4873 7.364970 CCCCGTTTTATATATAAAGCAACCAC 58.635 38.462 23.58 14.87 34.42 4.16
2953 4874 7.364970 CCCGTTTTATATATAAAGCAACCACC 58.635 38.462 23.58 6.55 34.42 4.61
2954 4875 7.073265 CCGTTTTATATATAAAGCAACCACCG 58.927 38.462 23.58 13.98 34.42 4.94
2955 4876 6.575942 CGTTTTATATATAAAGCAACCACCGC 59.424 38.462 23.58 6.31 34.42 5.68
2956 4877 6.563222 TTTATATATAAAGCAACCACCGCC 57.437 37.500 12.90 0.00 0.00 6.13
2957 4878 1.305201 ATATAAAGCAACCACCGCCG 58.695 50.000 0.00 0.00 0.00 6.46
2958 4879 0.249676 TATAAAGCAACCACCGCCGA 59.750 50.000 0.00 0.00 0.00 5.54
2959 4880 1.303091 ATAAAGCAACCACCGCCGAC 61.303 55.000 0.00 0.00 0.00 4.79
2960 4881 2.661840 TAAAGCAACCACCGCCGACA 62.662 55.000 0.00 0.00 0.00 4.35
2963 4884 4.920112 CAACCACCGCCGACACCA 62.920 66.667 0.00 0.00 0.00 4.17
2964 4885 4.178169 AACCACCGCCGACACCAA 62.178 61.111 0.00 0.00 0.00 3.67
2965 4886 3.700831 AACCACCGCCGACACCAAA 62.701 57.895 0.00 0.00 0.00 3.28
2966 4887 3.353836 CCACCGCCGACACCAAAG 61.354 66.667 0.00 0.00 0.00 2.77
2967 4888 2.590575 CACCGCCGACACCAAAGT 60.591 61.111 0.00 0.00 0.00 2.66
2968 4889 2.280592 ACCGCCGACACCAAAGTC 60.281 61.111 0.00 0.00 35.19 3.01
2969 4890 2.280524 CCGCCGACACCAAAGTCA 60.281 61.111 0.00 0.00 38.43 3.41
2970 4891 2.604174 CCGCCGACACCAAAGTCAC 61.604 63.158 0.00 0.00 38.43 3.67
2971 4892 2.935955 GCCGACACCAAAGTCACG 59.064 61.111 0.00 0.00 38.43 4.35
2972 4893 1.593209 GCCGACACCAAAGTCACGA 60.593 57.895 0.00 0.00 38.43 4.35
2973 4894 1.155424 GCCGACACCAAAGTCACGAA 61.155 55.000 0.00 0.00 38.43 3.85
2974 4895 0.580104 CCGACACCAAAGTCACGAAC 59.420 55.000 0.00 0.00 38.43 3.95
2975 4896 0.228742 CGACACCAAAGTCACGAACG 59.771 55.000 0.00 0.00 38.43 3.95
2976 4897 0.580104 GACACCAAAGTCACGAACGG 59.420 55.000 0.00 0.00 38.40 4.44
2977 4898 0.176219 ACACCAAAGTCACGAACGGA 59.824 50.000 0.00 0.00 0.00 4.69
2978 4899 0.859232 CACCAAAGTCACGAACGGAG 59.141 55.000 0.00 0.00 0.00 4.63
2980 4901 1.682854 ACCAAAGTCACGAACGGAGTA 59.317 47.619 0.00 0.00 45.00 2.59
2981 4902 2.056577 CCAAAGTCACGAACGGAGTAC 58.943 52.381 0.00 0.00 45.00 2.73
2982 4903 1.712350 CAAAGTCACGAACGGAGTACG 59.288 52.381 0.00 0.00 45.00 3.67
2983 4904 1.229428 AAGTCACGAACGGAGTACGA 58.771 50.000 0.00 0.00 45.00 3.43
2984 4905 1.229428 AGTCACGAACGGAGTACGAA 58.771 50.000 0.00 0.00 45.00 3.85
2985 4906 1.603802 AGTCACGAACGGAGTACGAAA 59.396 47.619 0.00 0.00 45.00 3.46
2986 4907 1.974680 GTCACGAACGGAGTACGAAAG 59.025 52.381 0.00 0.00 45.00 2.62
2987 4908 1.069022 TCACGAACGGAGTACGAAAGG 60.069 52.381 0.00 0.00 45.00 3.11
2988 4909 1.069022 CACGAACGGAGTACGAAAGGA 60.069 52.381 0.00 0.00 45.00 3.36
2989 4910 1.608590 ACGAACGGAGTACGAAAGGAA 59.391 47.619 0.00 0.00 45.00 3.36
2990 4911 2.034558 ACGAACGGAGTACGAAAGGAAA 59.965 45.455 0.00 0.00 45.00 3.13
2991 4912 3.052036 CGAACGGAGTACGAAAGGAAAA 58.948 45.455 0.00 0.00 45.00 2.29
2992 4913 3.490526 CGAACGGAGTACGAAAGGAAAAA 59.509 43.478 0.00 0.00 45.00 1.94
2993 4914 4.606894 CGAACGGAGTACGAAAGGAAAAAC 60.607 45.833 0.00 0.00 45.00 2.43
2994 4915 4.190772 AACGGAGTACGAAAGGAAAAACA 58.809 39.130 0.00 0.00 45.00 2.83
2995 4916 4.635324 AACGGAGTACGAAAGGAAAAACAA 59.365 37.500 0.00 0.00 45.00 2.83
2996 4917 5.123661 AACGGAGTACGAAAGGAAAAACAAA 59.876 36.000 0.00 0.00 45.00 2.83
2997 4918 6.349197 AACGGAGTACGAAAGGAAAAACAAAA 60.349 34.615 0.00 0.00 45.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
776 1122 2.396160 ACGCCGCTTATACGTAGAAG 57.604 50.000 22.53 22.53 38.45 2.85
1499 2407 1.674441 CTATCGTACCTGCAGTCGGAA 59.326 52.381 13.81 5.80 0.00 4.30
2690 4602 2.091588 GTGGTTGTAGTGCGTAATGTCG 59.908 50.000 0.00 0.00 0.00 4.35
2859 4780 3.287222 CCGTCACATGGGAATTATTGGT 58.713 45.455 0.00 0.00 0.00 3.67
2860 4781 3.988379 CCGTCACATGGGAATTATTGG 57.012 47.619 0.00 0.00 0.00 3.16
2869 4790 0.034574 TTGATTCCCCGTCACATGGG 60.035 55.000 0.00 0.00 44.35 4.00
2870 4791 1.832883 TTTGATTCCCCGTCACATGG 58.167 50.000 0.00 0.00 0.00 3.66
2871 4792 3.574614 GTTTTTGATTCCCCGTCACATG 58.425 45.455 0.00 0.00 0.00 3.21
2872 4793 2.560981 GGTTTTTGATTCCCCGTCACAT 59.439 45.455 0.00 0.00 0.00 3.21
2873 4794 1.957877 GGTTTTTGATTCCCCGTCACA 59.042 47.619 0.00 0.00 0.00 3.58
2874 4795 1.271379 GGGTTTTTGATTCCCCGTCAC 59.729 52.381 0.00 0.00 35.52 3.67
2875 4796 1.623163 GGGTTTTTGATTCCCCGTCA 58.377 50.000 0.00 0.00 35.52 4.35
2879 4800 1.271379 GTGACGGGTTTTTGATTCCCC 59.729 52.381 0.00 0.00 38.09 4.81
2880 4801 2.235891 AGTGACGGGTTTTTGATTCCC 58.764 47.619 0.00 0.00 37.98 3.97
2881 4802 4.758165 TCTTAGTGACGGGTTTTTGATTCC 59.242 41.667 0.00 0.00 0.00 3.01
2882 4803 5.934935 TCTTAGTGACGGGTTTTTGATTC 57.065 39.130 0.00 0.00 0.00 2.52
2883 4804 5.768164 ACATCTTAGTGACGGGTTTTTGATT 59.232 36.000 0.00 0.00 0.00 2.57
2884 4805 5.313712 ACATCTTAGTGACGGGTTTTTGAT 58.686 37.500 0.00 0.00 0.00 2.57
2885 4806 4.710324 ACATCTTAGTGACGGGTTTTTGA 58.290 39.130 0.00 0.00 0.00 2.69
2886 4807 5.432885 AACATCTTAGTGACGGGTTTTTG 57.567 39.130 0.00 0.00 0.00 2.44
2887 4808 5.471116 GGTAACATCTTAGTGACGGGTTTTT 59.529 40.000 0.00 0.00 0.00 1.94
2888 4809 4.999311 GGTAACATCTTAGTGACGGGTTTT 59.001 41.667 0.00 0.00 0.00 2.43
2889 4810 4.572909 GGTAACATCTTAGTGACGGGTTT 58.427 43.478 0.00 0.00 0.00 3.27
2890 4811 3.367703 CGGTAACATCTTAGTGACGGGTT 60.368 47.826 0.00 0.00 0.00 4.11
2891 4812 2.165030 CGGTAACATCTTAGTGACGGGT 59.835 50.000 0.00 0.00 0.00 5.28
2892 4813 2.424601 TCGGTAACATCTTAGTGACGGG 59.575 50.000 0.00 0.00 0.00 5.28
2893 4814 3.770263 TCGGTAACATCTTAGTGACGG 57.230 47.619 0.00 0.00 0.00 4.79
2894 4815 6.400727 CCTTTTTCGGTAACATCTTAGTGACG 60.401 42.308 0.00 0.00 0.00 4.35
2895 4816 6.620089 GCCTTTTTCGGTAACATCTTAGTGAC 60.620 42.308 0.00 0.00 0.00 3.67
2896 4817 5.410439 GCCTTTTTCGGTAACATCTTAGTGA 59.590 40.000 0.00 0.00 0.00 3.41
2897 4818 5.411669 AGCCTTTTTCGGTAACATCTTAGTG 59.588 40.000 0.00 0.00 0.00 2.74
2898 4819 5.557866 AGCCTTTTTCGGTAACATCTTAGT 58.442 37.500 0.00 0.00 0.00 2.24
2899 4820 6.496338 AAGCCTTTTTCGGTAACATCTTAG 57.504 37.500 0.00 0.00 0.00 2.18
2900 4821 6.887626 AAAGCCTTTTTCGGTAACATCTTA 57.112 33.333 0.00 0.00 0.00 2.10
2901 4822 5.784578 AAAGCCTTTTTCGGTAACATCTT 57.215 34.783 0.00 0.00 0.00 2.40
2902 4823 5.106830 CGTAAAGCCTTTTTCGGTAACATCT 60.107 40.000 0.00 0.00 34.63 2.90
2903 4824 5.084055 CGTAAAGCCTTTTTCGGTAACATC 58.916 41.667 0.00 0.00 34.63 3.06
2904 4825 4.614306 GCGTAAAGCCTTTTTCGGTAACAT 60.614 41.667 13.35 0.00 37.49 2.71
2905 4826 3.303924 GCGTAAAGCCTTTTTCGGTAACA 60.304 43.478 13.35 0.00 37.49 2.41
2906 4827 3.228749 GCGTAAAGCCTTTTTCGGTAAC 58.771 45.455 13.35 0.00 37.49 2.50
2907 4828 3.541071 GCGTAAAGCCTTTTTCGGTAA 57.459 42.857 13.35 0.00 37.49 2.85
2918 4839 7.094848 TTTATATATAAAACGGGGCGTAAAGCC 60.095 37.037 14.26 0.00 45.53 4.35
2919 4840 5.868043 ATATATAAAACGGGGCGTAAAGC 57.132 39.130 0.00 0.00 39.99 3.51
2920 4841 7.959109 GCTTTATATATAAAACGGGGCGTAAAG 59.041 37.037 16.69 5.67 39.99 1.85
2921 4842 7.443575 TGCTTTATATATAAAACGGGGCGTAAA 59.556 33.333 16.69 1.49 39.99 2.01
2922 4843 6.933521 TGCTTTATATATAAAACGGGGCGTAA 59.066 34.615 16.69 1.77 39.99 3.18
2923 4844 6.462500 TGCTTTATATATAAAACGGGGCGTA 58.538 36.000 16.69 3.21 39.99 4.42
2924 4845 5.307204 TGCTTTATATATAAAACGGGGCGT 58.693 37.500 16.69 0.00 43.97 5.68
2925 4846 5.866335 TGCTTTATATATAAAACGGGGCG 57.134 39.130 16.69 6.67 32.39 6.13
2926 4847 6.016108 TGGTTGCTTTATATATAAAACGGGGC 60.016 38.462 16.69 15.63 32.39 5.80
2927 4848 7.364970 GTGGTTGCTTTATATATAAAACGGGG 58.635 38.462 16.69 7.83 32.39 5.73
2928 4849 7.364970 GGTGGTTGCTTTATATATAAAACGGG 58.635 38.462 16.69 8.13 32.39 5.28
2929 4850 7.073265 CGGTGGTTGCTTTATATATAAAACGG 58.927 38.462 16.69 11.68 32.39 4.44
2930 4851 6.575942 GCGGTGGTTGCTTTATATATAAAACG 59.424 38.462 16.69 10.54 32.39 3.60
2931 4852 6.859508 GGCGGTGGTTGCTTTATATATAAAAC 59.140 38.462 16.69 13.50 32.39 2.43
2932 4853 6.293516 CGGCGGTGGTTGCTTTATATATAAAA 60.294 38.462 16.69 3.10 32.39 1.52
2933 4854 5.179742 CGGCGGTGGTTGCTTTATATATAAA 59.820 40.000 15.47 15.47 0.00 1.40
2934 4855 4.691685 CGGCGGTGGTTGCTTTATATATAA 59.308 41.667 0.00 0.81 0.00 0.98
2935 4856 4.021280 TCGGCGGTGGTTGCTTTATATATA 60.021 41.667 7.21 0.00 0.00 0.86
2936 4857 3.071479 CGGCGGTGGTTGCTTTATATAT 58.929 45.455 0.00 0.00 0.00 0.86
2937 4858 2.102757 TCGGCGGTGGTTGCTTTATATA 59.897 45.455 7.21 0.00 0.00 0.86
2938 4859 1.134340 TCGGCGGTGGTTGCTTTATAT 60.134 47.619 7.21 0.00 0.00 0.86
2939 4860 0.249676 TCGGCGGTGGTTGCTTTATA 59.750 50.000 7.21 0.00 0.00 0.98
2940 4861 1.003112 TCGGCGGTGGTTGCTTTAT 60.003 52.632 7.21 0.00 0.00 1.40
2941 4862 1.962306 GTCGGCGGTGGTTGCTTTA 60.962 57.895 7.21 0.00 0.00 1.85
2942 4863 3.284449 GTCGGCGGTGGTTGCTTT 61.284 61.111 7.21 0.00 0.00 3.51
2943 4864 4.555709 TGTCGGCGGTGGTTGCTT 62.556 61.111 7.21 0.00 0.00 3.91
2946 4867 4.920112 TGGTGTCGGCGGTGGTTG 62.920 66.667 7.21 0.00 0.00 3.77
2947 4868 3.700831 TTTGGTGTCGGCGGTGGTT 62.701 57.895 7.21 0.00 0.00 3.67
2948 4869 4.178169 TTTGGTGTCGGCGGTGGT 62.178 61.111 7.21 0.00 0.00 4.16
2949 4870 3.353836 CTTTGGTGTCGGCGGTGG 61.354 66.667 7.21 0.00 0.00 4.61
2950 4871 2.590575 ACTTTGGTGTCGGCGGTG 60.591 61.111 7.21 0.00 0.00 4.94
2951 4872 2.280592 GACTTTGGTGTCGGCGGT 60.281 61.111 7.21 0.00 0.00 5.68
2952 4873 2.280524 TGACTTTGGTGTCGGCGG 60.281 61.111 7.21 0.00 39.64 6.13
2953 4874 2.935955 GTGACTTTGGTGTCGGCG 59.064 61.111 0.00 0.00 39.64 6.46
2954 4875 1.155424 TTCGTGACTTTGGTGTCGGC 61.155 55.000 0.00 0.00 39.64 5.54
2955 4876 0.580104 GTTCGTGACTTTGGTGTCGG 59.420 55.000 0.00 0.00 39.64 4.79
2956 4877 0.228742 CGTTCGTGACTTTGGTGTCG 59.771 55.000 0.00 0.00 39.64 4.35
2957 4878 0.580104 CCGTTCGTGACTTTGGTGTC 59.420 55.000 0.00 0.00 37.47 3.67
2958 4879 0.176219 TCCGTTCGTGACTTTGGTGT 59.824 50.000 0.00 0.00 0.00 4.16
2959 4880 0.859232 CTCCGTTCGTGACTTTGGTG 59.141 55.000 0.00 0.00 0.00 4.17
2960 4881 0.462789 ACTCCGTTCGTGACTTTGGT 59.537 50.000 0.00 0.00 0.00 3.67
2961 4882 2.056577 GTACTCCGTTCGTGACTTTGG 58.943 52.381 0.00 0.00 0.00 3.28
2962 4883 1.712350 CGTACTCCGTTCGTGACTTTG 59.288 52.381 0.00 0.00 0.00 2.77
2963 4884 1.603802 TCGTACTCCGTTCGTGACTTT 59.396 47.619 0.00 0.00 37.94 2.66
2964 4885 1.229428 TCGTACTCCGTTCGTGACTT 58.771 50.000 0.00 0.00 37.94 3.01
2965 4886 1.229428 TTCGTACTCCGTTCGTGACT 58.771 50.000 0.00 0.00 37.94 3.41
2966 4887 1.974680 CTTTCGTACTCCGTTCGTGAC 59.025 52.381 0.00 0.00 37.94 3.67
2967 4888 1.069022 CCTTTCGTACTCCGTTCGTGA 60.069 52.381 0.00 0.00 37.94 4.35
2968 4889 1.069022 TCCTTTCGTACTCCGTTCGTG 60.069 52.381 0.00 0.00 37.94 4.35
2969 4890 1.238439 TCCTTTCGTACTCCGTTCGT 58.762 50.000 0.00 0.00 37.94 3.85
2970 4891 2.336554 TTCCTTTCGTACTCCGTTCG 57.663 50.000 0.00 0.00 37.94 3.95
2971 4892 4.270808 TGTTTTTCCTTTCGTACTCCGTTC 59.729 41.667 0.00 0.00 37.94 3.95
2972 4893 4.190772 TGTTTTTCCTTTCGTACTCCGTT 58.809 39.130 0.00 0.00 37.94 4.44
2973 4894 3.795877 TGTTTTTCCTTTCGTACTCCGT 58.204 40.909 0.00 0.00 37.94 4.69
2974 4895 4.799419 TTGTTTTTCCTTTCGTACTCCG 57.201 40.909 0.00 0.00 38.13 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.