AutoCloner

Multiple sequence alignment - TraesCS7B01G062600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G062600	chr7B	100.000	2570	0	0	1	2570	66320964	66323533	0.000000e+00	4747.0
1	TraesCS7B01G062600	chr7B	95.686	1414	47	10	456	1858	11701013	11699603	0.000000e+00	2261.0
2	TraesCS7B01G062600	chr7B	92.457	464	32	2	1	462	11701522	11701060	0.000000e+00	660.0
3	TraesCS7B01G062600	chr7B	89.398	349	25	2	1850	2198	11699670	11699334	1.830000e-116	429.0
4	TraesCS7B01G062600	chr7B	83.059	425	29	14	1806	2199	733270280	733269868	1.890000e-91	346.0
5	TraesCS7B01G062600	chr2D	92.898	1760	89	17	456	2206	207005721	207003989	0.000000e+00	2525.0
6	TraesCS7B01G062600	chr2D	91.453	1755	84	28	456	2199	535662858	535664557	0.000000e+00	2350.0
7	TraesCS7B01G062600	chr2D	91.280	1766	83	27	456	2198	77210121	77211838	0.000000e+00	2342.0
8	TraesCS7B01G062600	chr2D	90.998	1744	81	33	456	2199	633747616	633749283	0.000000e+00	2281.0
9	TraesCS7B01G062600	chr2D	91.886	456	36	1	1	456	207006228	207005774	1.000000e-178	636.0
10	TraesCS7B01G062600	chr2D	91.886	456	35	2	1	456	535662352	535662805	1.000000e-178	636.0
11	TraesCS7B01G062600	chr2D	91.886	456	36	1	1	456	633747109	633747563	1.000000e-178	636.0
12	TraesCS7B01G062600	chr3D	91.903	1766	81	22	456	2202	447609301	447607579	0.000000e+00	2412.0
13	TraesCS7B01G062600	chr3D	91.411	1758	84	29	456	2202	374010337	374008636	0.000000e+00	2348.0
14	TraesCS7B01G062600	chr3D	91.396	1755	84	29	456	2199	155676388	155678086	0.000000e+00	2342.0
15	TraesCS7B01G062600	chr3D	92.763	456	32	1	1	456	374010844	374010390	0.000000e+00	658.0
16	TraesCS7B01G062600	chr3D	91.886	456	36	1	1	456	155675881	155676335	1.000000e-178	636.0
17	TraesCS7B01G062600	chr3D	92.562	363	23	4	2202	2560	447607019	447606657	3.790000e-143	518.0
18	TraesCS7B01G062600	chr5B	91.334	1777	70	20	457	2202	547624142	547622419	0.000000e+00	2351.0
19	TraesCS7B01G062600	chr5B	92.641	462	31	3	1	462	547624648	547624190	0.000000e+00	662.0
20	TraesCS7B01G062600	chr5B	93.867	375	21	2	2197	2570	547621835	547621462	4.800000e-157	564.0
21	TraesCS7B01G062600	chr5B	83.146	356	34	14	1852	2199	692429280	692429617	4.160000e-78	302.0
22	TraesCS7B01G062600	chr1D	91.354	1758	88	26	456	2202	422850254	422848550	0.000000e+00	2346.0
23	TraesCS7B01G062600	chr1D	92.544	456	33	1	1	456	422850761	422850307	0.000000e+00	652.0
24	TraesCS7B01G062600	chr6D	91.163	1754	89	28	456	2198	445277561	445275863	0.000000e+00	2320.0
25	TraesCS7B01G062600	chr6D	90.671	1758	77	21	456	2202	387624157	387622476	0.000000e+00	2257.0
26	TraesCS7B01G062600	chr6D	100.000	32	0	0	2532	2563	460812891	460812860	2.760000e-05	60.2
27	TraesCS7B01G062600	chr2B	90.100	1798	67	25	456	2199	765114293	765112553	0.000000e+00	2231.0
28	TraesCS7B01G062600	chr2B	92.742	372	25	2	2201	2570	765111962	765111591	1.050000e-148	536.0
29	TraesCS7B01G062600	chr3B	89.807	1766	68	20	456	2198	725543492	725545168	0.000000e+00	2161.0
30	TraesCS7B01G062600	chr3B	93.966	348	19	2	2201	2546	725545761	725546108	2.270000e-145	525.0
31	TraesCS7B01G062600	chr5A	89.043	1807	93	45	456	2199	509129148	509130912	0.000000e+00	2143.0
32	TraesCS7B01G062600	chr5A	90.831	349	26	4	456	799	395004571	395004918	1.800000e-126	462.0
33	TraesCS7B01G062600	chr1B	87.394	1182	68	18	1034	2199	176794328	176793212	0.000000e+00	1282.0
34	TraesCS7B01G062600	chr1B	82.775	865	72	24	1349	2199	61977957	61978758	0.000000e+00	701.0
35	TraesCS7B01G062600	chr5D	92.105	456	35	1	1	456	504761448	504761902	2.160000e-180	641.0
36	TraesCS7B01G062600	chrUn	92.838	377	24	3	2197	2570	112553814	112553438	6.250000e-151	544.0
37	TraesCS7B01G062600	chr6A	94.017	351	20	1	2197	2546	558831697	558832047	4.870000e-147	531.0
38	TraesCS7B01G062600	chr6A	89.691	291	18	2	1909	2199	558830831	558831109	6.760000e-96	361.0
39	TraesCS7B01G062600	chr7A	93.750	352	20	2	2197	2546	704259816	704260167	6.300000e-146	527.0
40	TraesCS7B01G062600	chr3A	93.966	348	19	2	2201	2546	741175108	741174761	2.270000e-145	525.0
41	TraesCS7B01G062600	chr1A	93.162	351	23	1	2197	2546	549442674	549443024	4.900000e-142	514.0
42	TraesCS7B01G062600	chr1A	86.513	304	26	5	1896	2199	376491613	376491901	1.150000e-83	320.0
43	TraesCS7B01G062600	chr2A	89.518	353	25	2	1850	2202	184515123	184514783	1.090000e-118	436.0
44	TraesCS7B01G062600	chr2A	88.252	349	29	5	1850	2198	202213634	202213970	8.560000e-110	407.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G062600	chr7B	66320964	66323533	2569	False	4747.000000	4747	100.000000	1	2570	1	chr7B.!!$F1	2569
1	TraesCS7B01G062600	chr7B	11699334	11701522	2188	True	1116.666667	2261	92.513667	1	2198	3	chr7B.!!$R2	2197
2	TraesCS7B01G062600	chr2D	77210121	77211838	1717	False	2342.000000	2342	91.280000	456	2198	1	chr2D.!!$F1	1742
3	TraesCS7B01G062600	chr2D	207003989	207006228	2239	True	1580.500000	2525	92.392000	1	2206	2	chr2D.!!$R1	2205
4	TraesCS7B01G062600	chr2D	535662352	535664557	2205	False	1493.000000	2350	91.669500	1	2199	2	chr2D.!!$F2	2198
5	TraesCS7B01G062600	chr2D	633747109	633749283	2174	False	1458.500000	2281	91.442000	1	2199	2	chr2D.!!$F3	2198
6	TraesCS7B01G062600	chr3D	374008636	374010844	2208	True	1503.000000	2348	92.087000	1	2202	2	chr3D.!!$R1	2201
7	TraesCS7B01G062600	chr3D	155675881	155678086	2205	False	1489.000000	2342	91.641000	1	2199	2	chr3D.!!$F1	2198
8	TraesCS7B01G062600	chr3D	447606657	447609301	2644	True	1465.000000	2412	92.232500	456	2560	2	chr3D.!!$R2	2104
9	TraesCS7B01G062600	chr5B	547621462	547624648	3186	True	1192.333333	2351	92.614000	1	2570	3	chr5B.!!$R1	2569
10	TraesCS7B01G062600	chr1D	422848550	422850761	2211	True	1499.000000	2346	91.949000	1	2202	2	chr1D.!!$R1	2201
11	TraesCS7B01G062600	chr6D	445275863	445277561	1698	True	2320.000000	2320	91.163000	456	2198	1	chr6D.!!$R2	1742
12	TraesCS7B01G062600	chr6D	387622476	387624157	1681	True	2257.000000	2257	90.671000	456	2202	1	chr6D.!!$R1	1746
13	TraesCS7B01G062600	chr2B	765111591	765114293	2702	True	1383.500000	2231	91.421000	456	2570	2	chr2B.!!$R1	2114
14	TraesCS7B01G062600	chr3B	725543492	725546108	2616	False	1343.000000	2161	91.886500	456	2546	2	chr3B.!!$F1	2090
15	TraesCS7B01G062600	chr5A	509129148	509130912	1764	False	2143.000000	2143	89.043000	456	2199	1	chr5A.!!$F2	1743
16	TraesCS7B01G062600	chr1B	176793212	176794328	1116	True	1282.000000	1282	87.394000	1034	2199	1	chr1B.!!$R1	1165
17	TraesCS7B01G062600	chr1B	61977957	61978758	801	False	701.000000	701	82.775000	1349	2199	1	chr1B.!!$F1	850
18	TraesCS7B01G062600	chr6A	558830831	558832047	1216	False	446.000000	531	91.854000	1909	2546	2	chr6A.!!$F1	637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
270	273	0.250252	GCTTGCTCTCTATGCTCCCC	60.25	60.0	0.0	0.0	0.0	4.81	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2087	2521	0.326264	GGTGAAGATGTGGTGGAGCT	59.674	55.0	0.0	0.0	0.0	4.09	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	1.434555	CACCGCGGATTCAGTAAACA	58.565	50.000	35.90	0.00	0.00	2.83
89	90	2.874086	CAGAGTGCACTGAACATGTCAA	59.126	45.455	27.27	0.00	39.94	3.18
112	113	1.890041	CACGGTTGAGGGCGTTTCA	60.890	57.895	0.00	0.00	0.00	2.69
134	135	0.334676	CAGGTGGGGCCCAAAATCTA	59.665	55.000	30.70	0.00	38.26	1.98
187	188	0.511221	TTTGCTTAAGACAGACGCGC	59.489	50.000	5.73	0.00	0.00	6.86
254	257	0.810648	CTCTCTCTGCTCTCACGCTT	59.189	55.000	0.00	0.00	0.00	4.68
262	265	0.453793	GCTCTCACGCTTGCTCTCTA	59.546	55.000	0.00	0.00	0.00	2.43
270	273	0.250252	GCTTGCTCTCTATGCTCCCC	60.250	60.000	0.00	0.00	0.00	4.81
300	303	1.931007	GCTCCCCTCCCATTTGCTCT	61.931	60.000	0.00	0.00	0.00	4.09
472	528	3.711190	TCTAGGCTACAATTGATGAGCCA	59.289	43.478	32.64	23.47	46.34	4.75
507	564	2.135139	TGCTGACGACTTGAATGTGAC	58.865	47.619	0.00	0.00	0.00	3.67
563	620	3.201930	TGCATTTGAGGGGATAAGCACTA	59.798	43.478	0.00	0.00	0.00	2.74
643	708	4.522789	TCCAATTCTTGTTCTAGGGTTTGC	59.477	41.667	0.00	0.00	0.00	3.68
651	716	5.811796	TGTTCTAGGGTTTGCAGTTACTA	57.188	39.130	0.00	0.00	0.00	1.82
730	822	8.258007	TGTTCATGTTCTAGGGTTCATAGTTAG	58.742	37.037	0.00	0.00	0.00	2.34
1017	1151	3.686726	GGCTTATGTATGAGCATAGCCAC	59.313	47.826	13.61	0.00	40.77	5.01
1182	1319	5.415701	GGTAAACCAGAAGAATGATGCTGAA	59.584	40.000	0.00	0.00	35.64	3.02
1396	1533	4.594920	ACCTGAAGAAAGAGAAGGATGACA	59.405	41.667	0.00	0.00	0.00	3.58
1539	1676	3.151912	AGCAACAAGAGGAAGCTTCAT	57.848	42.857	27.02	21.50	29.98	2.57
1602	1750	3.141398	GTCTGACCATGTGTGTCAATGT	58.859	45.455	5.05	0.00	41.85	2.71
1695	1843	4.943705	TCTGTAGCAATGAACCTTGGATTC	59.056	41.667	0.00	0.00	0.00	2.52
1779	1943	8.623903	GTTTGTGATGAATTATCAGCTTGGATA	58.376	33.333	0.00	0.00	46.09	2.59
1780	1944	7.734924	TGTGATGAATTATCAGCTTGGATAC	57.265	36.000	0.00	0.00	46.09	2.24
1782	1946	7.940688	TGTGATGAATTATCAGCTTGGATACAT	59.059	33.333	0.00	0.00	46.98	2.29
1783	1947	9.440773	GTGATGAATTATCAGCTTGGATACATA	57.559	33.333	0.00	0.00	46.98	2.29
1784	1948	9.662947	TGATGAATTATCAGCTTGGATACATAG	57.337	33.333	0.00	0.00	43.63	2.23
1785	1949	9.881649	GATGAATTATCAGCTTGGATACATAGA	57.118	33.333	0.00	0.00	43.24	1.98
1798	1962	5.419155	TGGATACATAGATAGTACTGCTGGC	59.581	44.000	5.39	0.00	46.17	4.85
1799	1963	5.419155	GGATACATAGATAGTACTGCTGGCA	59.581	44.000	5.39	0.00	0.00	4.92
1802	1966	6.522625	ACATAGATAGTACTGCTGGCATAG	57.477	41.667	5.39	0.00	0.00	2.23
1803	1967	6.249192	ACATAGATAGTACTGCTGGCATAGA	58.751	40.000	5.39	0.00	0.00	1.98
1804	1968	6.376864	ACATAGATAGTACTGCTGGCATAGAG	59.623	42.308	5.39	0.00	0.00	2.43
1805	1969	3.509575	AGATAGTACTGCTGGCATAGAGC	59.490	47.826	5.39	0.00	44.65	4.09
1808	1972	3.234353	AGTACTGCTGGCATAGAGCATA	58.766	45.455	0.00	0.00	45.27	3.14
1809	1973	2.540265	ACTGCTGGCATAGAGCATAC	57.460	50.000	0.00	0.00	45.27	2.39
1810	1974	2.045524	ACTGCTGGCATAGAGCATACT	58.954	47.619	0.00	0.00	45.27	2.12
1811	1975	2.224233	ACTGCTGGCATAGAGCATACTG	60.224	50.000	0.00	0.00	45.27	2.74
1812	1976	3.442097	CTGCTGGCATAGAGCATACTGC	61.442	54.545	0.00	0.00	45.27	4.40
1830	1994	7.387673	GCATACTGCTGTCATACATAAATGGTA	59.612	37.037	0.00	0.00	40.96	3.25
1831	1995	8.712363	CATACTGCTGTCATACATAAATGGTAC	58.288	37.037	0.00	0.00	0.00	3.34
1832	1996	6.055588	ACTGCTGTCATACATAAATGGTACC	58.944	40.000	4.43	4.43	0.00	3.34
1833	1997	6.126768	ACTGCTGTCATACATAAATGGTACCT	60.127	38.462	14.36	0.00	0.00	3.08
1834	1998	6.054941	TGCTGTCATACATAAATGGTACCTG	58.945	40.000	14.36	4.92	0.00	4.00
1835	1999	5.049405	GCTGTCATACATAAATGGTACCTGC	60.049	44.000	14.36	0.00	0.00	4.85
1836	2000	5.995446	TGTCATACATAAATGGTACCTGCA	58.005	37.500	14.36	0.00	0.00	4.41
1837	2001	6.600388	TGTCATACATAAATGGTACCTGCAT	58.400	36.000	14.36	0.00	0.00	3.96
1838	2002	7.740805	TGTCATACATAAATGGTACCTGCATA	58.259	34.615	14.36	1.76	0.00	3.14
1839	2003	7.877612	TGTCATACATAAATGGTACCTGCATAG	59.122	37.037	14.36	2.04	0.00	2.23
1840	2004	8.094548	GTCATACATAAATGGTACCTGCATAGA	58.905	37.037	14.36	0.00	0.00	1.98
1841	2005	8.825774	TCATACATAAATGGTACCTGCATAGAT	58.174	33.333	14.36	0.00	0.00	1.98
2087	2521	2.852495	CTTCTTCTTGGCCGGCGCTA	62.852	60.000	22.54	9.57	34.44	4.26
2125	2559	4.760047	CCGCCCTCCTGGTTGTCG	62.760	72.222	0.00	0.00	36.04	4.35
2126	2560	4.760047	CGCCCTCCTGGTTGTCGG	62.760	72.222	0.00	0.00	36.04	4.79
2128	2562	4.760047	CCCTCCTGGTTGTCGGCG	62.760	72.222	0.00	0.00	0.00	6.46
2129	2563	3.691342	CCTCCTGGTTGTCGGCGA	61.691	66.667	4.99	4.99	0.00	5.54
2130	2564	2.125912	CTCCTGGTTGTCGGCGAG	60.126	66.667	11.20	0.00	0.00	5.03
2131	2565	4.373116	TCCTGGTTGTCGGCGAGC	62.373	66.667	11.20	6.16	0.00	5.03
2137	2571	2.048222	TTGTCGGCGAGCTCTTGG	60.048	61.111	11.20	0.09	0.00	3.61
2190	2624	2.158900	CCTCCGACAGCTTATCCACATT	60.159	50.000	0.00	0.00	0.00	2.71
2199	2633	4.341806	CAGCTTATCCACATTAATTGGGCA	59.658	41.667	13.40	3.54	34.56	5.36
2202	2636	5.737063	GCTTATCCACATTAATTGGGCAGTG	60.737	44.000	13.40	5.86	34.56	3.66
2212	3242	0.394488	TTGGGCAGTGGTTTCGACAA	60.394	50.000	0.00	0.00	0.00	3.18
2219	3249	3.312828	CAGTGGTTTCGACAAGAGAGAG	58.687	50.000	0.00	0.00	0.00	3.20
2286	3318	2.203640	AGAGCGGAGGTGGACACA	60.204	61.111	4.69	0.00	39.88	3.72
2425	3459	6.371548	GGATGCTACTCAAACAACATCACTAA	59.628	38.462	0.00	0.00	36.49	2.24
2470	3504	2.253610	CTGGTTACTACCCACTGGTCA	58.746	52.381	0.00	0.00	43.06	4.02
2506	3540	2.435437	AGGCCAAACTCTTTTTGTGCAT	59.565	40.909	5.01	3.46	31.67	3.96

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
89	90	2.676471	GCCCTCAACCGTGCCAAT	60.676	61.111	0.00	0.00	0.00	3.16
112	113	1.739608	ATTTTGGGCCCCACCTGTCT	61.740	55.000	22.27	0.00	39.10	3.41
134	135	1.217244	GTCCGTTAGGCCACGTCAT	59.783	57.895	13.90	0.00	38.57	3.06
187	188	3.057547	CTGTCTCTGGCGACCCGAG	62.058	68.421	9.83	9.83	34.89	4.63
215	216	3.161450	AGCGATATGTGGGCCGGT	61.161	61.111	1.90	0.00	0.00	5.28
218	219	3.044305	GCGAGCGATATGTGGGCC	61.044	66.667	0.00	0.00	0.00	5.80
220	221	0.387878	GAGAGCGAGCGATATGTGGG	60.388	60.000	0.00	0.00	0.00	4.61
227	228	1.785041	GAGCAGAGAGAGCGAGCGAT	61.785	60.000	0.00	0.00	37.01	4.58
254	257	1.395045	CGTGGGGAGCATAGAGAGCA	61.395	60.000	0.00	0.00	0.00	4.26
300	303	2.754658	GGCGACCGGAGAGGAGAA	60.755	66.667	9.46	0.00	45.00	2.87
370	373	4.221422	ATGTACTGCGCGGCGGAT	62.221	61.111	25.03	13.47	38.46	4.18
472	528	1.833630	TCAGCAAGACCCTCGAATGAT	59.166	47.619	0.00	0.00	0.00	2.45
507	564	2.022195	CTGGATTCCCATGCTCACAAG	58.978	52.381	0.00	0.00	42.59	3.16
563	620	2.026822	CACAGGCAATGAACCTCCTACT	60.027	50.000	0.00	0.00	34.42	2.57
643	708	8.258007	TGAACCCTAGAACATGAATAGTAACTG	58.742	37.037	0.00	0.00	0.00	3.16
730	822	3.334583	TGAACCCTAGAACATCAGCAC	57.665	47.619	0.00	0.00	0.00	4.40
762	882	7.560626	ACAGTACCTATGAACCCTAGAACTAAG	59.439	40.741	0.00	0.00	0.00	2.18
1017	1151	3.305813	GGCATGCCATCTTGTTATCATGG	60.306	47.826	32.08	0.00	33.81	3.66
1083	1220	4.285020	TCTCATATGTCTCCTGCAACTCT	58.715	43.478	1.90	0.00	0.00	3.24
1182	1319	5.679638	GCTTTCCACACTCACTGAAATGTTT	60.680	40.000	0.00	0.00	0.00	2.83
1396	1533	6.157645	TCCAGCTTATCCTTCTCTTTCTTCAT	59.842	38.462	0.00	0.00	0.00	2.57
1539	1676	5.993055	TCATCACAAATAGCCTTGATCTGA	58.007	37.500	0.00	0.00	0.00	3.27
1602	1750	6.439375	TCCTCCATAGCTACTACAAAAGACAA	59.561	38.462	0.00	0.00	0.00	3.18
1695	1843	7.148641	ACAGAGTACTCTCACAAACAACATAG	58.851	38.462	22.76	8.75	42.66	2.23
1779	1943	6.249192	TCTATGCCAGCAGTACTATCTATGT	58.751	40.000	0.00	0.00	0.00	2.29
1780	1944	6.680131	GCTCTATGCCAGCAGTACTATCTATG	60.680	46.154	0.00	0.00	36.82	2.23
1782	1946	4.702612	GCTCTATGCCAGCAGTACTATCTA	59.297	45.833	0.00	0.00	36.82	1.98
1783	1947	3.509575	GCTCTATGCCAGCAGTACTATCT	59.490	47.826	0.00	0.00	36.82	1.98
1784	1948	3.256879	TGCTCTATGCCAGCAGTACTATC	59.743	47.826	0.00	0.00	42.09	2.08
1785	1949	3.234353	TGCTCTATGCCAGCAGTACTAT	58.766	45.455	0.00	0.00	42.09	2.12
1786	1950	2.666317	TGCTCTATGCCAGCAGTACTA	58.334	47.619	0.00	0.00	42.09	1.82
1787	1951	1.489481	TGCTCTATGCCAGCAGTACT	58.511	50.000	0.00	0.00	42.09	2.73
1805	1969	7.734924	ACCATTTATGTATGACAGCAGTATG	57.265	36.000	0.00	0.00	40.87	2.39
1808	1972	6.055588	GGTACCATTTATGTATGACAGCAGT	58.944	40.000	7.15	0.00	0.00	4.40
1809	1973	6.203530	CAGGTACCATTTATGTATGACAGCAG	59.796	42.308	15.94	0.00	0.00	4.24
1810	1974	6.054941	CAGGTACCATTTATGTATGACAGCA	58.945	40.000	15.94	0.00	0.00	4.41
1811	1975	5.049405	GCAGGTACCATTTATGTATGACAGC	60.049	44.000	15.94	0.00	0.00	4.40
1812	1976	6.054941	TGCAGGTACCATTTATGTATGACAG	58.945	40.000	15.94	0.00	0.00	3.51
1814	1978	8.094548	TCTATGCAGGTACCATTTATGTATGAC	58.905	37.037	15.94	0.00	0.00	3.06
1818	1982	8.258007	GCTATCTATGCAGGTACCATTTATGTA	58.742	37.037	15.94	2.76	0.00	2.29
1820	1984	6.540189	GGCTATCTATGCAGGTACCATTTATG	59.460	42.308	15.94	4.02	0.00	1.90
1821	1985	6.445139	AGGCTATCTATGCAGGTACCATTTAT	59.555	38.462	15.94	5.50	0.00	1.40
1824	1988	4.019860	CAGGCTATCTATGCAGGTACCATT	60.020	45.833	15.94	0.00	0.00	3.16
1827	1991	2.234908	CCAGGCTATCTATGCAGGTACC	59.765	54.545	2.73	2.73	0.00	3.34
1830	1994	0.689623	GCCAGGCTATCTATGCAGGT	59.310	55.000	3.29	0.00	32.28	4.00
1831	1995	0.689055	TGCCAGGCTATCTATGCAGG	59.311	55.000	14.15	0.00	31.48	4.85
1832	1996	2.783609	ATGCCAGGCTATCTATGCAG	57.216	50.000	14.15	0.00	36.37	4.41
1833	1997	3.444029	TCTATGCCAGGCTATCTATGCA	58.556	45.455	14.15	0.00	37.02	3.96
1834	1998	4.686191	ATCTATGCCAGGCTATCTATGC	57.314	45.455	14.15	0.00	0.00	3.14
1835	1999	5.303845	TGCTATCTATGCCAGGCTATCTATG	59.696	44.000	14.15	0.00	0.00	2.23
1836	2000	5.462240	TGCTATCTATGCCAGGCTATCTAT	58.538	41.667	14.15	0.00	0.00	1.98
1837	2001	4.871822	TGCTATCTATGCCAGGCTATCTA	58.128	43.478	14.15	0.00	0.00	1.98
1838	2002	3.717576	TGCTATCTATGCCAGGCTATCT	58.282	45.455	14.15	0.00	0.00	1.98
1839	2003	4.081198	ACTTGCTATCTATGCCAGGCTATC	60.081	45.833	14.15	0.00	0.00	2.08
1840	2004	3.843027	ACTTGCTATCTATGCCAGGCTAT	59.157	43.478	14.15	7.28	0.00	2.97
1841	2005	3.242867	ACTTGCTATCTATGCCAGGCTA	58.757	45.455	14.15	0.00	0.00	3.93
1842	2006	2.053244	ACTTGCTATCTATGCCAGGCT	58.947	47.619	14.15	0.35	0.00	4.58
1843	2007	2.557920	ACTTGCTATCTATGCCAGGC	57.442	50.000	3.66	3.66	0.00	4.85
1950	2383	9.977762	GTAGAAGAAAAAGTTTAGTTTCGTCAA	57.022	29.630	13.39	0.00	41.66	3.18
2087	2521	0.326264	GGTGAAGATGTGGTGGAGCT	59.674	55.000	0.00	0.00	0.00	4.09
2118	2552	2.048127	AAGAGCTCGCCGACAACC	60.048	61.111	8.37	0.00	0.00	3.77
2119	2553	2.383527	CCAAGAGCTCGCCGACAAC	61.384	63.158	8.37	0.00	0.00	3.32
2120	2554	2.048222	CCAAGAGCTCGCCGACAA	60.048	61.111	8.37	0.00	0.00	3.18
2121	2555	2.867855	AACCAAGAGCTCGCCGACA	61.868	57.895	8.37	0.00	0.00	4.35
2122	2556	2.048127	AACCAAGAGCTCGCCGAC	60.048	61.111	8.37	0.00	0.00	4.79
2123	2557	1.888436	ATCAACCAAGAGCTCGCCGA	61.888	55.000	8.37	1.03	0.00	5.54
2124	2558	1.448540	ATCAACCAAGAGCTCGCCG	60.449	57.895	8.37	1.60	0.00	6.46
2125	2559	0.391661	TCATCAACCAAGAGCTCGCC	60.392	55.000	8.37	0.00	0.00	5.54
2126	2560	1.329906	CATCATCAACCAAGAGCTCGC	59.670	52.381	8.37	0.00	0.00	5.03
2127	2561	2.606725	GTCATCATCAACCAAGAGCTCG	59.393	50.000	8.37	0.00	0.00	5.03
2128	2562	2.606725	CGTCATCATCAACCAAGAGCTC	59.393	50.000	5.27	5.27	0.00	4.09
2129	2563	2.234661	TCGTCATCATCAACCAAGAGCT	59.765	45.455	0.00	0.00	0.00	4.09
2130	2564	2.606725	CTCGTCATCATCAACCAAGAGC	59.393	50.000	0.00	0.00	0.00	4.09
2131	2565	2.606725	GCTCGTCATCATCAACCAAGAG	59.393	50.000	0.00	0.00	0.00	2.85
2137	2571	2.606725	CCAAGAGCTCGTCATCATCAAC	59.393	50.000	8.37	0.00	0.00	3.18
2190	2624	2.156098	GTCGAAACCACTGCCCAATTA	58.844	47.619	0.00	0.00	0.00	1.40
2199	2633	2.297597	CCTCTCTCTTGTCGAAACCACT	59.702	50.000	0.00	0.00	0.00	4.00
2202	2636	1.066787	CCCCTCTCTCTTGTCGAAACC	60.067	57.143	0.00	0.00	0.00	3.27
2212	3242	0.933700	CTCCTCTTCCCCCTCTCTCT	59.066	60.000	0.00	0.00	0.00	3.10
2219	3249	3.412408	GCCCACTCCTCTTCCCCC	61.412	72.222	0.00	0.00	0.00	5.40
2286	3318	5.644636	TCGTTTCGGTTTCTGCCTTTAATAT	59.355	36.000	0.00	0.00	0.00	1.28
2425	3459	5.445964	GGTTCAATACCAATGGGATAGTGT	58.554	41.667	3.55	0.00	46.92	3.55
2484	3518	2.235898	TGCACAAAAAGAGTTTGGCCTT	59.764	40.909	3.32	0.00	33.92	4.35

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.