Multiple sequence alignment - TraesCS7B01G062500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G062500 chr7B 100.000 4737 0 0 1 4737 66319538 66314802 0.000000e+00 8748.0
1 TraesCS7B01G062500 chr7B 85.455 605 57 17 4016 4607 66308002 66307416 6.780000e-168 601.0
2 TraesCS7B01G062500 chr7B 86.923 130 16 1 4608 4737 66233917 66233789 1.370000e-30 145.0
3 TraesCS7B01G062500 chr7B 98.214 56 1 0 3936 3991 66308058 66308003 1.080000e-16 99.0
4 TraesCS7B01G062500 chr7D 93.843 1608 75 11 3151 4737 107659530 107657926 0.000000e+00 2399.0
5 TraesCS7B01G062500 chr7D 93.767 1508 73 9 1609 3101 107661028 107659527 0.000000e+00 2244.0
6 TraesCS7B01G062500 chr7D 89.096 752 56 18 330 1060 107662520 107661774 0.000000e+00 911.0
7 TraesCS7B01G062500 chr7D 83.188 690 70 21 3350 4012 107616941 107616271 1.470000e-164 590.0
8 TraesCS7B01G062500 chr7D 85.740 554 54 17 1062 1612 107661722 107661191 3.200000e-156 562.0
9 TraesCS7B01G062500 chr7D 81.861 634 78 27 3157 3762 107585908 107585284 2.550000e-137 499.0
10 TraesCS7B01G062500 chr7D 86.850 327 36 5 2780 3102 107586253 107585930 4.510000e-95 359.0
11 TraesCS7B01G062500 chr7A 94.566 1509 63 7 1609 3102 112977265 112975761 0.000000e+00 2314.0
12 TraesCS7B01G062500 chr7A 88.671 1174 68 28 427 1568 112978690 112977550 0.000000e+00 1371.0
13 TraesCS7B01G062500 chr7A 94.131 852 43 5 3150 3995 112975752 112974902 0.000000e+00 1290.0
14 TraesCS7B01G062500 chr7A 88.182 770 74 14 3201 3962 112968258 112967498 0.000000e+00 902.0
15 TraesCS7B01G062500 chr7A 86.650 779 57 20 3986 4737 112973384 112972626 0.000000e+00 819.0
16 TraesCS7B01G062500 chr7A 86.357 667 68 17 3905 4567 112957687 112957040 0.000000e+00 706.0
17 TraesCS7B01G062500 chr7A 87.282 401 40 8 3350 3746 112772702 112772309 9.350000e-122 448.0
18 TraesCS7B01G062500 chr7A 85.644 404 44 9 3350 3746 112794352 112793956 3.410000e-111 412.0
19 TraesCS7B01G062500 chr7A 83.641 379 41 11 4364 4737 112965808 112965446 2.110000e-88 337.0
20 TraesCS7B01G062500 chr7A 82.949 217 23 11 3541 3754 112947414 112947209 2.910000e-42 183.0
21 TraesCS7B01G062500 chr7A 87.943 141 15 2 3767 3906 112958160 112958021 1.050000e-36 165.0
22 TraesCS7B01G062500 chr7A 100.000 28 0 0 3964 3991 112946224 112946197 9.000000e-03 52.8
23 TraesCS7B01G062500 chr2D 84.337 249 33 4 36 281 187528711 187528956 6.130000e-59 239.0
24 TraesCS7B01G062500 chr5D 83.203 256 40 2 29 281 531998590 531998335 1.030000e-56 231.0
25 TraesCS7B01G062500 chr5D 81.923 260 40 5 29 284 76030774 76030518 3.710000e-51 213.0
26 TraesCS7B01G062500 chr1D 83.203 256 35 7 31 281 431763947 431764199 1.330000e-55 228.0
27 TraesCS7B01G062500 chr1A 83.534 249 35 5 37 281 93368762 93369008 1.330000e-55 228.0
28 TraesCS7B01G062500 chr5B 83.065 248 36 5 37 281 707382255 707382011 2.220000e-53 220.0
29 TraesCS7B01G062500 chr5B 82.661 248 39 3 37 281 635380867 635380621 2.870000e-52 217.0
30 TraesCS7B01G062500 chr1B 82.661 248 39 3 37 281 655851156 655850910 2.870000e-52 217.0
31 TraesCS7B01G062500 chr5A 82.661 248 37 5 39 282 464505905 464505660 1.030000e-51 215.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G062500 chr7B 66314802 66319538 4736 True 8748.0 8748 100.0000 1 4737 1 chr7B.!!$R2 4736
1 TraesCS7B01G062500 chr7B 66307416 66308058 642 True 350.0 601 91.8345 3936 4607 2 chr7B.!!$R3 671
2 TraesCS7B01G062500 chr7D 107657926 107662520 4594 True 1529.0 2399 90.6115 330 4737 4 chr7D.!!$R3 4407
3 TraesCS7B01G062500 chr7D 107616271 107616941 670 True 590.0 590 83.1880 3350 4012 1 chr7D.!!$R1 662
4 TraesCS7B01G062500 chr7D 107585284 107586253 969 True 429.0 499 84.3555 2780 3762 2 chr7D.!!$R2 982
5 TraesCS7B01G062500 chr7A 112972626 112978690 6064 True 1448.5 2314 91.0045 427 4737 4 chr7A.!!$R6 4310
6 TraesCS7B01G062500 chr7A 112965446 112968258 2812 True 619.5 902 85.9115 3201 4737 2 chr7A.!!$R5 1536
7 TraesCS7B01G062500 chr7A 112957040 112958160 1120 True 435.5 706 87.1500 3767 4567 2 chr7A.!!$R4 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.033504 TTCGGCTCGCTTCAGTTCTT 59.966 50.0 0.00 0.00 0.00 2.52 F
747 752 0.035739 GAAGTTGGCGGTTGGTAGGA 59.964 55.0 0.00 0.00 0.00 2.94 F
748 753 0.475044 AAGTTGGCGGTTGGTAGGAA 59.525 50.0 0.00 0.00 0.00 3.36 F
781 822 0.550147 AGCTGGACCAGGTACCCATT 60.550 55.0 24.64 0.00 40.59 3.16 F
2434 2791 0.526211 AGACATACTTCGCTGCGTCA 59.474 50.0 22.48 9.14 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1092 1185 0.253327 GGAAAAGATGTCGGCCCTCT 59.747 55.000 0.00 0.0 0.00 3.69 R
2144 2501 0.322456 CTGAACTTTGGATGCGGGGA 60.322 55.000 0.00 0.0 0.00 4.81 R
2412 2769 1.726791 ACGCAGCGAAGTATGTCTTTG 59.273 47.619 24.65 0.0 39.78 2.77 R
2707 3064 1.822990 AGAATCAGCAGCCAAACCATG 59.177 47.619 0.00 0.0 0.00 3.66 R
4252 7807 0.109723 TTAGAGCCCACAAAACGCCT 59.890 50.000 0.00 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.500234 TGTTTTCACATTAGATCCTCAGGG 58.500 41.667 0.00 0.00 0.00 4.45
34 35 4.778213 TTTCACATTAGATCCTCAGGGG 57.222 45.455 0.00 0.00 0.00 4.79
35 36 3.421394 TCACATTAGATCCTCAGGGGT 57.579 47.619 0.00 0.00 36.25 4.95
36 37 3.041211 TCACATTAGATCCTCAGGGGTG 58.959 50.000 0.00 0.00 36.25 4.61
37 38 2.105477 CACATTAGATCCTCAGGGGTGG 59.895 54.545 0.00 0.00 36.25 4.61
38 39 2.293856 ACATTAGATCCTCAGGGGTGGT 60.294 50.000 0.00 0.00 36.25 4.16
39 40 2.661176 TTAGATCCTCAGGGGTGGTT 57.339 50.000 0.00 0.00 36.25 3.67
40 41 1.879575 TAGATCCTCAGGGGTGGTTG 58.120 55.000 0.00 0.00 36.25 3.77
41 42 1.077429 GATCCTCAGGGGTGGTTGC 60.077 63.158 0.00 0.00 36.25 4.17
42 43 1.542375 ATCCTCAGGGGTGGTTGCT 60.542 57.895 0.00 0.00 36.25 3.91
43 44 1.856539 ATCCTCAGGGGTGGTTGCTG 61.857 60.000 0.00 0.00 36.25 4.41
44 45 2.833913 CCTCAGGGGTGGTTGCTGT 61.834 63.158 0.00 0.00 0.00 4.40
45 46 1.151450 CTCAGGGGTGGTTGCTGTT 59.849 57.895 0.00 0.00 0.00 3.16
46 47 0.890996 CTCAGGGGTGGTTGCTGTTC 60.891 60.000 0.00 0.00 0.00 3.18
47 48 1.151450 CAGGGGTGGTTGCTGTTCT 59.849 57.895 0.00 0.00 0.00 3.01
48 49 1.151450 AGGGGTGGTTGCTGTTCTG 59.849 57.895 0.00 0.00 0.00 3.02
49 50 2.564721 GGGGTGGTTGCTGTTCTGC 61.565 63.158 0.00 0.00 0.00 4.26
50 51 1.529244 GGGTGGTTGCTGTTCTGCT 60.529 57.895 3.65 0.00 0.00 4.24
51 52 1.656441 GGTGGTTGCTGTTCTGCTG 59.344 57.895 3.65 0.00 0.00 4.41
52 53 1.008079 GTGGTTGCTGTTCTGCTGC 60.008 57.895 0.00 0.00 41.65 5.25
53 54 2.253452 GGTTGCTGTTCTGCTGCG 59.747 61.111 0.00 0.00 43.81 5.18
54 55 2.428071 GTTGCTGTTCTGCTGCGC 60.428 61.111 0.00 0.00 43.81 6.09
55 56 2.592574 TTGCTGTTCTGCTGCGCT 60.593 55.556 9.73 0.00 43.81 5.92
56 57 2.900167 TTGCTGTTCTGCTGCGCTG 61.900 57.895 9.73 10.04 43.81 5.18
57 58 4.099170 GCTGTTCTGCTGCGCTGG 62.099 66.667 16.47 6.50 32.54 4.85
58 59 2.667536 CTGTTCTGCTGCGCTGGT 60.668 61.111 16.47 0.00 0.00 4.00
59 60 2.666190 TGTTCTGCTGCGCTGGTC 60.666 61.111 16.47 0.62 0.00 4.02
60 61 3.426568 GTTCTGCTGCGCTGGTCC 61.427 66.667 16.47 0.00 0.00 4.46
61 62 3.630013 TTCTGCTGCGCTGGTCCT 61.630 61.111 16.47 0.00 0.00 3.85
62 63 2.282783 TTCTGCTGCGCTGGTCCTA 61.283 57.895 16.47 0.00 0.00 2.94
63 64 1.617018 TTCTGCTGCGCTGGTCCTAT 61.617 55.000 16.47 0.00 0.00 2.57
64 65 1.886313 CTGCTGCGCTGGTCCTATG 60.886 63.158 16.47 0.00 0.00 2.23
65 66 2.302199 CTGCTGCGCTGGTCCTATGA 62.302 60.000 16.47 0.00 0.00 2.15
66 67 1.593750 GCTGCGCTGGTCCTATGAG 60.594 63.158 16.47 0.00 0.00 2.90
67 68 1.068753 CTGCGCTGGTCCTATGAGG 59.931 63.158 9.73 0.00 36.46 3.86
68 69 1.680522 CTGCGCTGGTCCTATGAGGT 61.681 60.000 9.73 0.00 36.53 3.85
69 70 1.068250 GCGCTGGTCCTATGAGGTC 59.932 63.158 0.00 0.00 36.53 3.85
70 71 1.395826 GCGCTGGTCCTATGAGGTCT 61.396 60.000 0.00 0.00 36.53 3.85
71 72 1.115467 CGCTGGTCCTATGAGGTCTT 58.885 55.000 0.00 0.00 36.53 3.01
72 73 2.307768 CGCTGGTCCTATGAGGTCTTA 58.692 52.381 0.00 0.00 36.53 2.10
73 74 2.294791 CGCTGGTCCTATGAGGTCTTAG 59.705 54.545 0.00 0.00 36.53 2.18
74 75 2.036604 GCTGGTCCTATGAGGTCTTAGC 59.963 54.545 0.00 0.00 36.53 3.09
75 76 3.300388 CTGGTCCTATGAGGTCTTAGCA 58.700 50.000 0.00 0.00 36.53 3.49
76 77 3.031736 TGGTCCTATGAGGTCTTAGCAC 58.968 50.000 0.00 0.00 36.53 4.40
77 78 2.034812 GGTCCTATGAGGTCTTAGCACG 59.965 54.545 0.00 0.00 36.53 5.34
78 79 2.950309 GTCCTATGAGGTCTTAGCACGA 59.050 50.000 0.00 0.00 36.53 4.35
79 80 2.950309 TCCTATGAGGTCTTAGCACGAC 59.050 50.000 0.00 0.00 36.53 4.34
80 81 2.287069 CCTATGAGGTCTTAGCACGACG 60.287 54.545 0.00 0.00 32.24 5.12
81 82 1.460504 ATGAGGTCTTAGCACGACGA 58.539 50.000 0.00 0.00 32.24 4.20
82 83 0.520404 TGAGGTCTTAGCACGACGAC 59.480 55.000 0.00 0.00 32.24 4.34
83 84 0.803740 GAGGTCTTAGCACGACGACT 59.196 55.000 0.00 0.59 32.24 4.18
84 85 1.199558 GAGGTCTTAGCACGACGACTT 59.800 52.381 0.00 0.00 32.24 3.01
85 86 1.612463 AGGTCTTAGCACGACGACTTT 59.388 47.619 0.00 0.00 32.24 2.66
86 87 1.984297 GGTCTTAGCACGACGACTTTC 59.016 52.381 0.00 0.00 32.24 2.62
87 88 2.606308 GGTCTTAGCACGACGACTTTCA 60.606 50.000 0.00 0.00 32.24 2.69
88 89 2.657372 GTCTTAGCACGACGACTTTCAG 59.343 50.000 0.00 0.00 0.00 3.02
89 90 2.551032 TCTTAGCACGACGACTTTCAGA 59.449 45.455 0.00 0.00 0.00 3.27
90 91 2.327081 TAGCACGACGACTTTCAGAC 57.673 50.000 0.00 0.00 0.00 3.51
91 92 0.669077 AGCACGACGACTTTCAGACT 59.331 50.000 0.00 0.00 0.00 3.24
92 93 0.778815 GCACGACGACTTTCAGACTG 59.221 55.000 0.00 0.00 0.00 3.51
93 94 1.864435 GCACGACGACTTTCAGACTGT 60.864 52.381 0.00 0.00 0.00 3.55
94 95 2.044860 CACGACGACTTTCAGACTGTC 58.955 52.381 0.00 0.00 0.00 3.51
95 96 1.948145 ACGACGACTTTCAGACTGTCT 59.052 47.619 4.06 4.06 0.00 3.41
96 97 2.287069 ACGACGACTTTCAGACTGTCTG 60.287 50.000 27.73 27.73 45.59 3.51
97 98 2.055100 GACGACTTTCAGACTGTCTGC 58.945 52.381 28.56 15.48 43.95 4.26
98 99 1.683917 ACGACTTTCAGACTGTCTGCT 59.316 47.619 28.56 13.23 43.95 4.24
99 100 2.885266 ACGACTTTCAGACTGTCTGCTA 59.115 45.455 28.56 17.76 43.95 3.49
100 101 3.238441 CGACTTTCAGACTGTCTGCTAC 58.762 50.000 28.56 17.14 43.95 3.58
101 102 3.304726 CGACTTTCAGACTGTCTGCTACA 60.305 47.826 28.56 12.16 43.95 2.74
102 103 4.621991 GACTTTCAGACTGTCTGCTACAA 58.378 43.478 28.56 16.91 43.95 2.41
103 104 4.372656 ACTTTCAGACTGTCTGCTACAAC 58.627 43.478 28.56 0.00 43.95 3.32
104 105 4.141937 ACTTTCAGACTGTCTGCTACAACA 60.142 41.667 28.56 10.45 43.95 3.33
105 106 4.400529 TTCAGACTGTCTGCTACAACAA 57.599 40.909 28.56 15.31 43.95 2.83
106 107 3.982475 TCAGACTGTCTGCTACAACAAG 58.018 45.455 28.56 5.64 43.95 3.16
107 108 3.384789 TCAGACTGTCTGCTACAACAAGT 59.615 43.478 28.56 0.00 43.95 3.16
108 109 4.122776 CAGACTGTCTGCTACAACAAGTT 58.877 43.478 23.43 0.00 37.72 2.66
109 110 4.572389 CAGACTGTCTGCTACAACAAGTTT 59.428 41.667 23.43 0.00 37.72 2.66
110 111 5.065218 CAGACTGTCTGCTACAACAAGTTTT 59.935 40.000 23.43 0.00 37.72 2.43
111 112 5.065218 AGACTGTCTGCTACAACAAGTTTTG 59.935 40.000 10.00 0.00 37.74 2.44
112 113 4.027572 TGTCTGCTACAACAAGTTTTGC 57.972 40.909 0.00 0.00 34.29 3.68
113 114 3.694072 TGTCTGCTACAACAAGTTTTGCT 59.306 39.130 0.00 0.00 34.29 3.91
114 115 4.201910 TGTCTGCTACAACAAGTTTTGCTC 60.202 41.667 0.00 0.00 34.29 4.26
115 116 4.035675 GTCTGCTACAACAAGTTTTGCTCT 59.964 41.667 0.00 0.00 0.00 4.09
116 117 4.035558 TCTGCTACAACAAGTTTTGCTCTG 59.964 41.667 0.00 0.00 0.00 3.35
117 118 3.045688 GCTACAACAAGTTTTGCTCTGC 58.954 45.455 0.00 0.00 0.00 4.26
118 119 3.243201 GCTACAACAAGTTTTGCTCTGCT 60.243 43.478 0.00 0.00 0.00 4.24
119 120 3.427161 ACAACAAGTTTTGCTCTGCTC 57.573 42.857 0.00 0.00 0.00 4.26
120 121 2.099756 ACAACAAGTTTTGCTCTGCTCC 59.900 45.455 0.00 0.00 0.00 4.70
121 122 0.947244 ACAAGTTTTGCTCTGCTCCG 59.053 50.000 0.00 0.00 0.00 4.63
122 123 1.229428 CAAGTTTTGCTCTGCTCCGA 58.771 50.000 0.00 0.00 0.00 4.55
123 124 1.808945 CAAGTTTTGCTCTGCTCCGAT 59.191 47.619 0.00 0.00 0.00 4.18
124 125 1.446907 AGTTTTGCTCTGCTCCGATG 58.553 50.000 0.00 0.00 0.00 3.84
125 126 1.002430 AGTTTTGCTCTGCTCCGATGA 59.998 47.619 0.00 0.00 0.00 2.92
126 127 1.396301 GTTTTGCTCTGCTCCGATGAG 59.604 52.381 0.00 0.00 41.84 2.90
127 128 0.107993 TTTGCTCTGCTCCGATGAGG 60.108 55.000 0.00 0.00 39.14 3.86
128 129 1.964608 TTGCTCTGCTCCGATGAGGG 61.965 60.000 0.00 0.00 41.52 4.30
129 130 2.130426 GCTCTGCTCCGATGAGGGA 61.130 63.158 0.00 0.00 41.52 4.20
135 136 2.038813 TCCGATGAGGGAGGTGCA 59.961 61.111 0.00 0.00 41.52 4.57
136 137 1.612146 TCCGATGAGGGAGGTGCAA 60.612 57.895 0.00 0.00 41.52 4.08
137 138 0.982852 TCCGATGAGGGAGGTGCAAT 60.983 55.000 0.00 0.00 41.52 3.56
138 139 0.107017 CCGATGAGGGAGGTGCAATT 60.107 55.000 0.00 0.00 35.97 2.32
139 140 1.019673 CGATGAGGGAGGTGCAATTG 58.980 55.000 0.00 0.00 0.00 2.32
140 141 0.743097 GATGAGGGAGGTGCAATTGC 59.257 55.000 23.69 23.69 42.50 3.56
141 142 1.033746 ATGAGGGAGGTGCAATTGCG 61.034 55.000 24.58 0.00 45.83 4.85
142 143 2.361610 AGGGAGGTGCAATTGCGG 60.362 61.111 24.58 0.00 45.83 5.69
143 144 2.361104 GGGAGGTGCAATTGCGGA 60.361 61.111 24.58 6.13 45.83 5.54
144 145 2.700773 GGGAGGTGCAATTGCGGAC 61.701 63.158 24.58 17.70 45.83 4.79
145 146 2.480555 GAGGTGCAATTGCGGACG 59.519 61.111 24.58 0.00 45.83 4.79
146 147 2.281484 AGGTGCAATTGCGGACGT 60.281 55.556 24.58 16.50 45.83 4.34
147 148 2.126888 GGTGCAATTGCGGACGTG 60.127 61.111 24.58 0.00 45.83 4.49
148 149 2.800746 GTGCAATTGCGGACGTGC 60.801 61.111 24.58 0.00 45.83 5.34
149 150 4.036804 TGCAATTGCGGACGTGCC 62.037 61.111 24.58 0.00 45.83 5.01
150 151 3.737172 GCAATTGCGGACGTGCCT 61.737 61.111 15.87 0.00 0.00 4.75
151 152 2.953821 CAATTGCGGACGTGCCTT 59.046 55.556 0.00 0.00 0.00 4.35
152 153 1.154225 CAATTGCGGACGTGCCTTC 60.154 57.895 0.00 0.00 0.00 3.46
153 154 2.677003 AATTGCGGACGTGCCTTCG 61.677 57.895 0.00 0.00 0.00 3.79
164 165 3.191539 GCCTTCGGCTCGCTTCAG 61.192 66.667 0.00 0.00 46.69 3.02
165 166 2.262915 CCTTCGGCTCGCTTCAGT 59.737 61.111 0.00 0.00 0.00 3.41
166 167 1.374758 CCTTCGGCTCGCTTCAGTT 60.375 57.895 0.00 0.00 0.00 3.16
167 168 1.355066 CCTTCGGCTCGCTTCAGTTC 61.355 60.000 0.00 0.00 0.00 3.01
168 169 0.389166 CTTCGGCTCGCTTCAGTTCT 60.389 55.000 0.00 0.00 0.00 3.01
169 170 0.033504 TTCGGCTCGCTTCAGTTCTT 59.966 50.000 0.00 0.00 0.00 2.52
170 171 0.885879 TCGGCTCGCTTCAGTTCTTA 59.114 50.000 0.00 0.00 0.00 2.10
171 172 1.476891 TCGGCTCGCTTCAGTTCTTAT 59.523 47.619 0.00 0.00 0.00 1.73
172 173 2.686405 TCGGCTCGCTTCAGTTCTTATA 59.314 45.455 0.00 0.00 0.00 0.98
173 174 3.129813 TCGGCTCGCTTCAGTTCTTATAA 59.870 43.478 0.00 0.00 0.00 0.98
174 175 4.051922 CGGCTCGCTTCAGTTCTTATAAT 58.948 43.478 0.00 0.00 0.00 1.28
175 176 4.149046 CGGCTCGCTTCAGTTCTTATAATC 59.851 45.833 0.00 0.00 0.00 1.75
176 177 4.149046 GGCTCGCTTCAGTTCTTATAATCG 59.851 45.833 0.00 0.00 0.00 3.34
177 178 4.740695 GCTCGCTTCAGTTCTTATAATCGT 59.259 41.667 0.00 0.00 0.00 3.73
178 179 5.108179 GCTCGCTTCAGTTCTTATAATCGTC 60.108 44.000 0.00 0.00 0.00 4.20
179 180 4.968181 TCGCTTCAGTTCTTATAATCGTCG 59.032 41.667 0.00 0.00 0.00 5.12
180 181 4.374112 CGCTTCAGTTCTTATAATCGTCGC 60.374 45.833 0.00 0.00 0.00 5.19
181 182 4.740695 GCTTCAGTTCTTATAATCGTCGCT 59.259 41.667 0.00 0.00 0.00 4.93
182 183 5.913514 GCTTCAGTTCTTATAATCGTCGCTA 59.086 40.000 0.00 0.00 0.00 4.26
183 184 6.087028 GCTTCAGTTCTTATAATCGTCGCTAG 59.913 42.308 0.00 0.00 0.00 3.42
184 185 6.856135 TCAGTTCTTATAATCGTCGCTAGA 57.144 37.500 0.00 0.00 0.00 2.43
185 186 7.436430 TCAGTTCTTATAATCGTCGCTAGAT 57.564 36.000 0.00 0.00 0.00 1.98
186 187 7.298854 TCAGTTCTTATAATCGTCGCTAGATG 58.701 38.462 0.00 0.00 34.75 2.90
187 188 6.524933 CAGTTCTTATAATCGTCGCTAGATGG 59.475 42.308 0.00 0.00 34.23 3.51
188 189 6.207025 AGTTCTTATAATCGTCGCTAGATGGT 59.793 38.462 0.00 0.00 34.23 3.55
189 190 6.179504 TCTTATAATCGTCGCTAGATGGTC 57.820 41.667 0.00 0.00 34.23 4.02
190 191 5.938710 TCTTATAATCGTCGCTAGATGGTCT 59.061 40.000 0.00 0.00 34.23 3.85
191 192 7.101700 TCTTATAATCGTCGCTAGATGGTCTA 58.898 38.462 0.00 0.00 34.23 2.59
192 193 7.769507 TCTTATAATCGTCGCTAGATGGTCTAT 59.230 37.037 0.00 0.00 34.23 1.98
193 194 4.688511 AATCGTCGCTAGATGGTCTATC 57.311 45.455 0.00 0.00 34.23 2.08
194 195 3.121738 TCGTCGCTAGATGGTCTATCA 57.878 47.619 0.00 0.00 38.31 2.15
195 196 3.473625 TCGTCGCTAGATGGTCTATCAA 58.526 45.455 0.00 0.00 38.31 2.57
196 197 4.072839 TCGTCGCTAGATGGTCTATCAAT 58.927 43.478 0.00 0.00 38.31 2.57
197 198 4.519350 TCGTCGCTAGATGGTCTATCAATT 59.481 41.667 0.00 0.00 38.31 2.32
198 199 5.009710 TCGTCGCTAGATGGTCTATCAATTT 59.990 40.000 0.00 0.00 38.31 1.82
199 200 5.117745 CGTCGCTAGATGGTCTATCAATTTG 59.882 44.000 0.00 0.00 38.31 2.32
200 201 5.986135 GTCGCTAGATGGTCTATCAATTTGT 59.014 40.000 0.00 0.00 38.31 2.83
201 202 7.145985 GTCGCTAGATGGTCTATCAATTTGTA 58.854 38.462 0.00 0.00 38.31 2.41
202 203 7.815068 GTCGCTAGATGGTCTATCAATTTGTAT 59.185 37.037 0.00 0.00 38.31 2.29
203 204 7.814587 TCGCTAGATGGTCTATCAATTTGTATG 59.185 37.037 0.00 0.00 38.31 2.39
204 205 7.600375 CGCTAGATGGTCTATCAATTTGTATGT 59.400 37.037 0.00 0.00 38.31 2.29
205 206 9.929180 GCTAGATGGTCTATCAATTTGTATGTA 57.071 33.333 0.00 0.00 38.31 2.29
239 240 7.701539 ATTTCTGGTATTTGTTGTGCTATCA 57.298 32.000 0.00 0.00 0.00 2.15
240 241 7.701539 TTTCTGGTATTTGTTGTGCTATCAT 57.298 32.000 0.00 0.00 0.00 2.45
241 242 6.682423 TCTGGTATTTGTTGTGCTATCATG 57.318 37.500 0.00 0.00 0.00 3.07
242 243 6.413892 TCTGGTATTTGTTGTGCTATCATGA 58.586 36.000 0.00 0.00 0.00 3.07
243 244 7.056006 TCTGGTATTTGTTGTGCTATCATGAT 58.944 34.615 13.81 13.81 0.00 2.45
244 245 7.557358 TCTGGTATTTGTTGTGCTATCATGATT 59.443 33.333 14.65 0.00 0.00 2.57
245 246 7.482474 TGGTATTTGTTGTGCTATCATGATTG 58.518 34.615 14.65 13.26 0.00 2.67
246 247 7.338957 TGGTATTTGTTGTGCTATCATGATTGA 59.661 33.333 19.51 0.00 36.00 2.57
247 248 8.190122 GGTATTTGTTGTGCTATCATGATTGAA 58.810 33.333 19.51 7.52 34.96 2.69
248 249 9.229784 GTATTTGTTGTGCTATCATGATTGAAG 57.770 33.333 19.51 10.03 34.96 3.02
249 250 7.451501 TTTGTTGTGCTATCATGATTGAAGA 57.548 32.000 19.51 6.12 34.96 2.87
250 251 7.634671 TTGTTGTGCTATCATGATTGAAGAT 57.365 32.000 19.51 0.00 34.96 2.40
251 252 8.735692 TTGTTGTGCTATCATGATTGAAGATA 57.264 30.769 19.51 0.00 34.96 1.98
252 253 8.735692 TGTTGTGCTATCATGATTGAAGATAA 57.264 30.769 19.51 3.91 34.96 1.75
253 254 9.176460 TGTTGTGCTATCATGATTGAAGATAAA 57.824 29.630 19.51 1.03 34.96 1.40
256 257 8.789762 TGTGCTATCATGATTGAAGATAAATGG 58.210 33.333 19.51 0.00 34.96 3.16
257 258 9.006839 GTGCTATCATGATTGAAGATAAATGGA 57.993 33.333 19.51 0.00 34.96 3.41
258 259 9.749340 TGCTATCATGATTGAAGATAAATGGAT 57.251 29.630 19.51 0.00 34.96 3.41
261 262 7.677454 TCATGATTGAAGATAAATGGATCGG 57.323 36.000 0.00 0.00 0.00 4.18
262 263 7.452562 TCATGATTGAAGATAAATGGATCGGA 58.547 34.615 0.00 0.00 0.00 4.55
263 264 7.938490 TCATGATTGAAGATAAATGGATCGGAA 59.062 33.333 0.00 0.00 0.00 4.30
264 265 7.734924 TGATTGAAGATAAATGGATCGGAAG 57.265 36.000 0.00 0.00 0.00 3.46
265 266 6.205464 TGATTGAAGATAAATGGATCGGAAGC 59.795 38.462 0.00 0.00 0.00 3.86
266 267 5.296151 TGAAGATAAATGGATCGGAAGCT 57.704 39.130 0.00 0.00 0.00 3.74
267 268 5.684704 TGAAGATAAATGGATCGGAAGCTT 58.315 37.500 0.00 0.00 0.00 3.74
268 269 6.122277 TGAAGATAAATGGATCGGAAGCTTT 58.878 36.000 0.00 0.00 0.00 3.51
269 270 6.260936 TGAAGATAAATGGATCGGAAGCTTTC 59.739 38.462 0.00 0.00 0.00 2.62
270 271 5.934781 AGATAAATGGATCGGAAGCTTTCT 58.065 37.500 0.00 0.00 0.00 2.52
271 272 5.994668 AGATAAATGGATCGGAAGCTTTCTC 59.005 40.000 0.00 0.00 0.00 2.87
272 273 2.231215 ATGGATCGGAAGCTTTCTCG 57.769 50.000 0.00 5.94 0.00 4.04
273 274 0.460284 TGGATCGGAAGCTTTCTCGC 60.460 55.000 0.00 0.00 0.00 5.03
274 275 1.154814 GGATCGGAAGCTTTCTCGCC 61.155 60.000 0.00 0.00 0.00 5.54
275 276 0.460284 GATCGGAAGCTTTCTCGCCA 60.460 55.000 0.00 0.00 0.00 5.69
276 277 0.036388 ATCGGAAGCTTTCTCGCCAA 60.036 50.000 0.00 0.00 0.00 4.52
277 278 0.250124 TCGGAAGCTTTCTCGCCAAA 60.250 50.000 0.00 0.00 0.00 3.28
278 279 0.591170 CGGAAGCTTTCTCGCCAAAA 59.409 50.000 0.00 0.00 0.00 2.44
279 280 1.001815 CGGAAGCTTTCTCGCCAAAAA 60.002 47.619 0.00 0.00 0.00 1.94
302 303 9.665719 AAAAATGGTTGTTTGTTTCTATTGTCT 57.334 25.926 0.00 0.00 0.00 3.41
304 305 9.744468 AAATGGTTGTTTGTTTCTATTGTCTAC 57.256 29.630 0.00 0.00 0.00 2.59
305 306 7.867305 TGGTTGTTTGTTTCTATTGTCTACA 57.133 32.000 0.00 0.00 0.00 2.74
306 307 8.458573 TGGTTGTTTGTTTCTATTGTCTACAT 57.541 30.769 0.00 0.00 0.00 2.29
307 308 9.562408 TGGTTGTTTGTTTCTATTGTCTACATA 57.438 29.630 0.00 0.00 0.00 2.29
319 320 9.990360 TCTATTGTCTACATAAAACTGTGTTCA 57.010 29.630 0.00 0.00 0.00 3.18
323 324 8.902540 TGTCTACATAAAACTGTGTTCAATCT 57.097 30.769 0.00 0.00 0.00 2.40
324 325 9.990360 TGTCTACATAAAACTGTGTTCAATCTA 57.010 29.630 0.00 0.00 0.00 1.98
332 333 8.856490 AAAACTGTGTTCAATCTAATGTCAAC 57.144 30.769 0.00 0.00 0.00 3.18
333 334 7.566760 AACTGTGTTCAATCTAATGTCAACA 57.433 32.000 0.00 0.00 0.00 3.33
334 335 7.194607 ACTGTGTTCAATCTAATGTCAACAG 57.805 36.000 0.00 0.00 0.00 3.16
343 344 8.311109 TCAATCTAATGTCAACAGTTAGCAGTA 58.689 33.333 0.00 0.00 0.00 2.74
352 353 6.468000 GTCAACAGTTAGCAGTAACAAACAAC 59.532 38.462 0.00 0.00 41.06 3.32
377 378 7.137426 CCTGAAATTCTCTCTGTCAGTTTTTG 58.863 38.462 0.00 0.00 35.07 2.44
411 414 2.363788 TTGACGAGTTGATCCTTCCG 57.636 50.000 0.00 0.00 0.00 4.30
412 415 0.530744 TGACGAGTTGATCCTTCCGG 59.469 55.000 0.00 0.00 0.00 5.14
419 422 2.493278 AGTTGATCCTTCCGGCAAATTG 59.507 45.455 0.00 0.00 0.00 2.32
454 457 1.700042 CCAGGCCTCCTCCACATACC 61.700 65.000 0.00 0.00 0.00 2.73
465 468 2.753043 ACATACCGACGGACGCCT 60.753 61.111 23.38 0.00 41.07 5.52
466 469 1.451927 ACATACCGACGGACGCCTA 60.452 57.895 23.38 1.65 41.07 3.93
468 471 2.550101 ATACCGACGGACGCCTAGC 61.550 63.158 23.38 0.00 41.07 3.42
746 751 0.958876 GGAAGTTGGCGGTTGGTAGG 60.959 60.000 0.00 0.00 0.00 3.18
747 752 0.035739 GAAGTTGGCGGTTGGTAGGA 59.964 55.000 0.00 0.00 0.00 2.94
748 753 0.475044 AAGTTGGCGGTTGGTAGGAA 59.525 50.000 0.00 0.00 0.00 3.36
777 818 1.789523 TATCAGCTGGACCAGGTACC 58.210 55.000 25.30 2.73 40.40 3.34
779 820 1.918293 CAGCTGGACCAGGTACCCA 60.918 63.158 25.30 0.00 40.40 4.51
781 822 0.550147 AGCTGGACCAGGTACCCATT 60.550 55.000 24.64 0.00 40.59 3.16
782 823 1.209621 GCTGGACCAGGTACCCATTA 58.790 55.000 23.09 0.00 31.21 1.90
783 824 1.134189 GCTGGACCAGGTACCCATTAC 60.134 57.143 23.09 0.00 31.21 1.89
784 825 2.478292 CTGGACCAGGTACCCATTACT 58.522 52.381 14.26 0.00 0.00 2.24
785 826 2.434702 CTGGACCAGGTACCCATTACTC 59.565 54.545 14.26 0.00 0.00 2.59
786 827 2.045326 TGGACCAGGTACCCATTACTCT 59.955 50.000 8.74 0.00 0.00 3.24
787 828 3.113043 GGACCAGGTACCCATTACTCTT 58.887 50.000 8.74 0.00 0.00 2.85
788 829 3.118371 GGACCAGGTACCCATTACTCTTG 60.118 52.174 8.74 0.00 0.00 3.02
807 848 3.434940 TGTTAGAAAAGGGAGGAAGGC 57.565 47.619 0.00 0.00 0.00 4.35
857 898 1.724082 TGTCGTCATTATGTGTGCGTG 59.276 47.619 0.00 0.00 0.00 5.34
909 950 1.829222 TGCCTGCCTACCTTACTACAC 59.171 52.381 0.00 0.00 0.00 2.90
952 995 1.666872 ACCGCTTGTCCGCAGTAAC 60.667 57.895 0.00 0.00 0.00 2.50
1046 1089 1.163554 CAAGCAGGACTTCAGCCTTC 58.836 55.000 0.00 0.00 36.04 3.46
1088 1181 3.958704 GCATATCTGCGATCGCTATACT 58.041 45.455 37.01 20.44 42.51 2.12
1092 1185 2.767505 TCTGCGATCGCTATACTGAGA 58.232 47.619 37.01 26.53 42.51 3.27
1094 1187 2.739379 CTGCGATCGCTATACTGAGAGA 59.261 50.000 37.01 14.22 42.51 3.10
1095 1188 2.739379 TGCGATCGCTATACTGAGAGAG 59.261 50.000 37.01 0.00 42.51 3.20
1096 1189 2.095213 GCGATCGCTATACTGAGAGAGG 59.905 54.545 31.94 0.00 38.26 3.69
1097 1190 2.675844 CGATCGCTATACTGAGAGAGGG 59.324 54.545 0.26 0.00 0.00 4.30
1098 1191 1.898902 TCGCTATACTGAGAGAGGGC 58.101 55.000 0.00 0.00 0.00 5.19
1099 1192 0.885196 CGCTATACTGAGAGAGGGCC 59.115 60.000 0.00 0.00 0.00 5.80
1266 1365 4.060205 GCAGAAACCTGGTAAAACTCGTA 58.940 43.478 0.00 0.00 32.40 3.43
1269 1368 5.050567 CAGAAACCTGGTAAAACTCGTACAC 60.051 44.000 0.00 0.00 0.00 2.90
1299 1398 7.170828 CACTTTTGGCTTTTACTGTTAATTCCC 59.829 37.037 0.00 0.00 0.00 3.97
1310 1409 6.620877 ACTGTTAATTCCCTGTATCACTCA 57.379 37.500 0.00 0.00 0.00 3.41
1330 1429 7.387673 TCACTCAACTCACACTAATAATTGGTG 59.612 37.037 0.00 0.00 46.25 4.17
1393 1492 3.943381 GACATTCAGCAACCAGATGATGA 59.057 43.478 0.00 0.00 43.14 2.92
1394 1493 4.533815 ACATTCAGCAACCAGATGATGAT 58.466 39.130 0.00 0.00 44.37 2.45
1395 1494 4.338400 ACATTCAGCAACCAGATGATGATG 59.662 41.667 0.00 1.78 44.37 3.07
1396 1495 3.918294 TCAGCAACCAGATGATGATGA 57.082 42.857 3.47 3.47 40.52 2.92
1409 1511 4.086706 TGATGATGATGCTGAAGCTCAT 57.913 40.909 13.54 13.54 42.66 2.90
1441 1543 4.347583 TCCCAATGCCAATTTGAAAGAACT 59.652 37.500 0.00 0.00 0.00 3.01
1453 1555 8.658609 CAATTTGAAAGAACTTGCTGAGAAAAA 58.341 29.630 0.00 0.00 0.00 1.94
1454 1556 8.953368 ATTTGAAAGAACTTGCTGAGAAAAAT 57.047 26.923 0.00 0.00 0.00 1.82
1463 1565 7.275888 ACTTGCTGAGAAAAATGTCAATGTA 57.724 32.000 0.00 0.00 0.00 2.29
1467 1569 5.858581 GCTGAGAAAAATGTCAATGTACACC 59.141 40.000 0.00 0.00 30.75 4.16
1517 1619 3.181440 TGGATGATTCCTATCCAGGTTGC 60.181 47.826 2.73 0.00 46.84 4.17
1543 1645 2.981784 TGATGCCCAGCCAGAGTATTAT 59.018 45.455 0.00 0.00 0.00 1.28
1661 2008 6.071334 CCACACTCTATTCTTCCAGTTCTGTA 60.071 42.308 0.00 0.00 0.00 2.74
1697 2044 7.607991 AGTCTGAATGTTTACCTCCAGTTTATG 59.392 37.037 0.00 0.00 0.00 1.90
1800 2147 6.544197 TCATAGTTACTCTGGATCACTCTCAC 59.456 42.308 0.00 0.00 0.00 3.51
2031 2388 4.824479 TTCTCCAGATGTGCAGATTACA 57.176 40.909 0.00 0.00 0.00 2.41
2044 2401 5.877012 GTGCAGATTACAGATGAAAGGAAGA 59.123 40.000 0.00 0.00 0.00 2.87
2077 2434 8.409371 TGAGTTGCAGTCAATTGTGTAAAAATA 58.591 29.630 5.13 0.00 34.29 1.40
2084 2441 9.225201 CAGTCAATTGTGTAAAAATATCGATGG 57.775 33.333 8.54 0.00 0.00 3.51
2120 2477 1.446907 ATCAGTTCTGCAAAGCCTCG 58.553 50.000 0.00 0.00 0.00 4.63
2223 2580 3.515502 AGAAAACACCTCATGATCCGAGA 59.484 43.478 10.13 0.00 31.84 4.04
2309 2666 3.876274 TGAGAGGAGATATTATGCGGC 57.124 47.619 0.00 0.00 0.00 6.53
2367 2724 7.386299 CAGTGGTATATATGCTCTTTCCTGTTC 59.614 40.741 0.62 0.00 0.00 3.18
2412 2769 5.762825 TTCTTCTGATTCTGCATTATGCC 57.237 39.130 15.06 0.00 44.23 4.40
2418 2775 5.066893 TCTGATTCTGCATTATGCCAAAGAC 59.933 40.000 15.06 7.82 44.23 3.01
2431 2788 1.061131 CCAAAGACATACTTCGCTGCG 59.939 52.381 17.25 17.25 37.93 5.18
2434 2791 0.526211 AGACATACTTCGCTGCGTCA 59.474 50.000 22.48 9.14 0.00 4.35
2956 3317 6.376581 AGCTATTCTTTCCTATATGCCATTGC 59.623 38.462 0.00 0.00 38.26 3.56
3104 3465 6.611381 TGCAAATCTTCCTCTATTTTTCACG 58.389 36.000 0.00 0.00 0.00 4.35
3106 3467 7.389330 TGCAAATCTTCCTCTATTTTTCACGTA 59.611 33.333 0.00 0.00 0.00 3.57
3107 3468 7.692705 GCAAATCTTCCTCTATTTTTCACGTAC 59.307 37.037 0.00 0.00 0.00 3.67
3108 3469 8.936864 CAAATCTTCCTCTATTTTTCACGTACT 58.063 33.333 0.00 0.00 0.00 2.73
3109 3470 8.705048 AATCTTCCTCTATTTTTCACGTACTC 57.295 34.615 0.00 0.00 0.00 2.59
3110 3471 6.628185 TCTTCCTCTATTTTTCACGTACTCC 58.372 40.000 0.00 0.00 0.00 3.85
3111 3472 5.334724 TCCTCTATTTTTCACGTACTCCC 57.665 43.478 0.00 0.00 0.00 4.30
3112 3473 5.021458 TCCTCTATTTTTCACGTACTCCCT 58.979 41.667 0.00 0.00 0.00 4.20
3113 3474 6.189859 TCCTCTATTTTTCACGTACTCCCTA 58.810 40.000 0.00 0.00 0.00 3.53
3114 3475 6.664816 TCCTCTATTTTTCACGTACTCCCTAA 59.335 38.462 0.00 0.00 0.00 2.69
3116 3477 7.985752 CCTCTATTTTTCACGTACTCCCTAATT 59.014 37.037 0.00 0.00 0.00 1.40
3122 3483 9.504708 TTTTTCACGTACTCCCTAATTAATTGA 57.495 29.630 11.05 0.00 0.00 2.57
3123 3484 8.483307 TTTCACGTACTCCCTAATTAATTGAC 57.517 34.615 11.05 0.00 0.00 3.18
3124 3485 7.414222 TCACGTACTCCCTAATTAATTGACT 57.586 36.000 11.05 0.00 0.00 3.41
3125 3486 8.523915 TCACGTACTCCCTAATTAATTGACTA 57.476 34.615 11.05 0.00 0.00 2.59
3126 3487 9.139734 TCACGTACTCCCTAATTAATTGACTAT 57.860 33.333 11.05 0.00 0.00 2.12
3127 3488 9.408069 CACGTACTCCCTAATTAATTGACTATC 57.592 37.037 11.05 0.00 0.00 2.08
3128 3489 9.364653 ACGTACTCCCTAATTAATTGACTATCT 57.635 33.333 11.05 0.00 0.00 1.98
3141 3502 9.929180 TTAATTGACTATCTAATTCGGATGGAG 57.071 33.333 10.22 2.42 0.00 3.86
3142 3503 5.984695 TGACTATCTAATTCGGATGGAGG 57.015 43.478 10.22 0.90 0.00 4.30
3143 3504 4.772624 TGACTATCTAATTCGGATGGAGGG 59.227 45.833 10.22 0.00 0.00 4.30
3144 3505 5.011982 ACTATCTAATTCGGATGGAGGGA 57.988 43.478 10.22 0.00 0.00 4.20
3145 3506 5.020132 ACTATCTAATTCGGATGGAGGGAG 58.980 45.833 10.22 0.85 0.00 4.30
3149 3510 2.016905 ATTCGGATGGAGGGAGTAGG 57.983 55.000 0.00 0.00 0.00 3.18
3152 3513 1.007963 TCGGATGGAGGGAGTAGGTTT 59.992 52.381 0.00 0.00 0.00 3.27
3175 3536 7.789273 TTTTTAGTATGTTCACCTTCAACGA 57.211 32.000 0.00 0.00 0.00 3.85
3181 3542 7.159372 AGTATGTTCACCTTCAACGATTAGTT 58.841 34.615 0.00 0.00 45.45 2.24
3186 3547 7.442969 TGTTCACCTTCAACGATTAGTTATGTT 59.557 33.333 0.00 0.00 42.02 2.71
3352 3720 5.518848 TGTGTTTCTTGATGTTCATTGCT 57.481 34.783 0.00 0.00 0.00 3.91
3353 3721 5.283294 TGTGTTTCTTGATGTTCATTGCTG 58.717 37.500 0.00 0.00 0.00 4.41
3354 3722 5.067544 TGTGTTTCTTGATGTTCATTGCTGA 59.932 36.000 0.00 0.00 0.00 4.26
3628 4011 0.875059 CCACTTCGGTTTCTCTTGCC 59.125 55.000 0.00 0.00 0.00 4.52
3657 4042 2.637382 TCTGGCTGATGTTTAGTGGTGA 59.363 45.455 0.00 0.00 0.00 4.02
3833 4222 1.227674 CTAGGACCATGCCCGCTTC 60.228 63.158 0.00 0.00 0.00 3.86
3834 4223 1.971505 CTAGGACCATGCCCGCTTCA 61.972 60.000 0.00 0.00 0.00 3.02
3903 4293 9.669353 CCAAATTAGTTGTATGTCATCTATTGC 57.331 33.333 0.00 0.00 35.23 3.56
3995 4732 4.899502 AGTAGTGCAGCAAAGTACATTCT 58.100 39.130 0.00 0.00 0.00 2.40
4005 6269 5.182001 AGCAAAGTACATTCTCAATCACCAC 59.818 40.000 0.00 0.00 0.00 4.16
4052 6698 3.181423 TGTGGTTTCCCAGCTCCTTAATT 60.181 43.478 0.00 0.00 42.94 1.40
4065 6716 6.921857 CAGCTCCTTAATTTCCATTAAGCATG 59.078 38.462 8.60 0.00 45.93 4.06
4149 7699 0.820891 GCATGATCCGTTGATGCCCT 60.821 55.000 0.00 0.00 37.17 5.19
4157 7707 4.067972 TCCGTTGATGCCCTAAGTTATC 57.932 45.455 0.00 0.00 0.00 1.75
4159 7709 4.080807 TCCGTTGATGCCCTAAGTTATCAA 60.081 41.667 0.00 0.00 37.25 2.57
4177 7728 7.286316 AGTTATCAATGGAAGCTAGAAAATGGG 59.714 37.037 0.00 0.00 0.00 4.00
4190 7741 5.463051 AGAAAATGGGAGTTCATGGAGAT 57.537 39.130 0.00 0.00 0.00 2.75
4252 7807 9.827198 ATTATCCATTCTCCTGCCATTAAAATA 57.173 29.630 0.00 0.00 0.00 1.40
4273 7833 1.544246 GGCGTTTTGTGGGCTCTAAAT 59.456 47.619 0.00 0.00 0.00 1.40
4283 7843 0.947244 GGCTCTAAATCGGTGCCATG 59.053 55.000 0.00 0.00 41.35 3.66
4300 7860 3.119029 GCCATGCACTTACCAATCATGTT 60.119 43.478 0.00 0.00 34.36 2.71
4305 7865 6.048732 TGCACTTACCAATCATGTTCTCTA 57.951 37.500 0.00 0.00 0.00 2.43
4508 8098 6.047511 AGTTGGGCATATTGTATGCAAAAA 57.952 33.333 19.92 10.22 46.21 1.94
4601 8209 6.477360 GTGGGTTTTGTTGTAAATGGTTACTG 59.523 38.462 0.00 0.00 40.35 2.74
4655 8267 5.534207 TCCAGTTTCTACACTTTTCGGTA 57.466 39.130 0.00 0.00 0.00 4.02
4664 8276 2.861935 ACACTTTTCGGTACACAACTCG 59.138 45.455 0.00 0.00 0.00 4.18
4715 8327 9.853921 GCAACAGTTTTTGATTTAAAGAGAATG 57.146 29.630 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.685276 AGGATCTAATGTGAAAACACATGAATA 57.315 29.630 14.97 5.25 44.19 1.75
3 4 8.585471 AGGATCTAATGTGAAAACACATGAAT 57.415 30.769 14.97 9.67 44.19 2.57
4 5 7.665145 TGAGGATCTAATGTGAAAACACATGAA 59.335 33.333 14.97 7.31 39.98 2.57
5 6 7.167535 TGAGGATCTAATGTGAAAACACATGA 58.832 34.615 14.97 10.12 39.98 3.07
6 7 7.381766 TGAGGATCTAATGTGAAAACACATG 57.618 36.000 14.97 5.71 39.98 3.21
7 8 6.600822 CCTGAGGATCTAATGTGAAAACACAT 59.399 38.462 9.59 9.59 41.08 3.21
8 9 5.939883 CCTGAGGATCTAATGTGAAAACACA 59.060 40.000 0.00 5.55 36.16 3.72
9 10 5.355350 CCCTGAGGATCTAATGTGAAAACAC 59.645 44.000 0.00 0.00 34.92 3.32
10 11 5.500234 CCCTGAGGATCTAATGTGAAAACA 58.500 41.667 0.00 0.00 34.92 2.83
11 12 4.884164 CCCCTGAGGATCTAATGTGAAAAC 59.116 45.833 0.00 0.00 38.24 2.43
12 13 4.540099 ACCCCTGAGGATCTAATGTGAAAA 59.460 41.667 0.00 0.00 39.89 2.29
13 14 4.080356 CACCCCTGAGGATCTAATGTGAAA 60.080 45.833 0.00 0.00 39.89 2.69
14 15 3.455910 CACCCCTGAGGATCTAATGTGAA 59.544 47.826 0.00 0.00 39.89 3.18
15 16 3.041211 CACCCCTGAGGATCTAATGTGA 58.959 50.000 0.00 0.00 39.89 3.58
16 17 2.105477 CCACCCCTGAGGATCTAATGTG 59.895 54.545 0.00 0.00 39.89 3.21
17 18 2.293856 ACCACCCCTGAGGATCTAATGT 60.294 50.000 0.00 0.00 39.89 2.71
18 19 2.412591 ACCACCCCTGAGGATCTAATG 58.587 52.381 0.00 0.00 39.89 1.90
19 20 2.780010 CAACCACCCCTGAGGATCTAAT 59.220 50.000 0.00 0.00 39.89 1.73
20 21 2.196595 CAACCACCCCTGAGGATCTAA 58.803 52.381 0.00 0.00 39.89 2.10
21 22 1.879575 CAACCACCCCTGAGGATCTA 58.120 55.000 0.00 0.00 39.89 1.98
22 23 1.566298 GCAACCACCCCTGAGGATCT 61.566 60.000 0.00 0.00 39.89 2.75
23 24 1.077429 GCAACCACCCCTGAGGATC 60.077 63.158 0.00 0.00 39.89 3.36
24 25 1.542375 AGCAACCACCCCTGAGGAT 60.542 57.895 0.00 0.00 39.89 3.24
25 26 2.121963 AGCAACCACCCCTGAGGA 60.122 61.111 0.00 0.00 39.89 3.71
26 27 2.034687 CAGCAACCACCCCTGAGG 59.965 66.667 0.00 0.00 43.78 3.86
27 28 0.890996 GAACAGCAACCACCCCTGAG 60.891 60.000 0.00 0.00 0.00 3.35
28 29 1.150536 GAACAGCAACCACCCCTGA 59.849 57.895 0.00 0.00 0.00 3.86
29 30 1.151450 AGAACAGCAACCACCCCTG 59.849 57.895 0.00 0.00 0.00 4.45
30 31 1.151450 CAGAACAGCAACCACCCCT 59.849 57.895 0.00 0.00 0.00 4.79
31 32 2.564721 GCAGAACAGCAACCACCCC 61.565 63.158 0.00 0.00 0.00 4.95
32 33 1.529244 AGCAGAACAGCAACCACCC 60.529 57.895 0.00 0.00 36.85 4.61
33 34 1.656441 CAGCAGAACAGCAACCACC 59.344 57.895 0.00 0.00 36.85 4.61
34 35 1.008079 GCAGCAGAACAGCAACCAC 60.008 57.895 0.00 0.00 36.85 4.16
35 36 2.545596 CGCAGCAGAACAGCAACCA 61.546 57.895 0.00 0.00 36.85 3.67
36 37 2.253452 CGCAGCAGAACAGCAACC 59.747 61.111 0.00 0.00 36.85 3.77
49 50 1.068753 CCTCATAGGACCAGCGCAG 59.931 63.158 11.47 0.00 37.67 5.18
50 51 1.676678 GACCTCATAGGACCAGCGCA 61.677 60.000 11.47 0.00 37.67 6.09
51 52 1.068250 GACCTCATAGGACCAGCGC 59.932 63.158 0.00 0.00 37.67 5.92
52 53 1.115467 AAGACCTCATAGGACCAGCG 58.885 55.000 0.00 0.00 37.67 5.18
53 54 2.036604 GCTAAGACCTCATAGGACCAGC 59.963 54.545 0.00 2.44 37.67 4.85
54 55 3.068873 GTGCTAAGACCTCATAGGACCAG 59.931 52.174 0.00 0.00 37.67 4.00
55 56 3.031736 GTGCTAAGACCTCATAGGACCA 58.968 50.000 0.00 0.00 37.67 4.02
56 57 2.034812 CGTGCTAAGACCTCATAGGACC 59.965 54.545 0.00 0.00 37.67 4.46
57 58 2.950309 TCGTGCTAAGACCTCATAGGAC 59.050 50.000 0.00 0.53 37.67 3.85
58 59 2.950309 GTCGTGCTAAGACCTCATAGGA 59.050 50.000 0.00 0.00 37.67 2.94
59 60 2.287069 CGTCGTGCTAAGACCTCATAGG 60.287 54.545 0.00 0.00 42.49 2.57
60 61 2.612672 TCGTCGTGCTAAGACCTCATAG 59.387 50.000 0.00 0.00 35.33 2.23
61 62 2.353889 GTCGTCGTGCTAAGACCTCATA 59.646 50.000 0.00 0.00 35.33 2.15
62 63 1.132643 GTCGTCGTGCTAAGACCTCAT 59.867 52.381 0.00 0.00 35.33 2.90
63 64 0.520404 GTCGTCGTGCTAAGACCTCA 59.480 55.000 0.00 0.00 35.33 3.86
64 65 0.803740 AGTCGTCGTGCTAAGACCTC 59.196 55.000 0.00 0.00 35.33 3.85
65 66 1.245732 AAGTCGTCGTGCTAAGACCT 58.754 50.000 0.00 0.00 35.33 3.85
66 67 1.984297 GAAAGTCGTCGTGCTAAGACC 59.016 52.381 0.00 0.00 35.33 3.85
67 68 2.657372 CTGAAAGTCGTCGTGCTAAGAC 59.343 50.000 0.00 0.00 35.41 3.01
68 69 2.551032 TCTGAAAGTCGTCGTGCTAAGA 59.449 45.455 0.00 0.00 33.76 2.10
69 70 2.657372 GTCTGAAAGTCGTCGTGCTAAG 59.343 50.000 0.00 0.00 33.76 2.18
70 71 2.292569 AGTCTGAAAGTCGTCGTGCTAA 59.707 45.455 0.00 0.00 33.76 3.09
71 72 1.878088 AGTCTGAAAGTCGTCGTGCTA 59.122 47.619 0.00 0.00 33.76 3.49
72 73 0.669077 AGTCTGAAAGTCGTCGTGCT 59.331 50.000 0.00 0.00 33.76 4.40
73 74 0.778815 CAGTCTGAAAGTCGTCGTGC 59.221 55.000 0.00 0.00 33.76 5.34
74 75 2.044860 GACAGTCTGAAAGTCGTCGTG 58.955 52.381 6.91 0.00 33.76 4.35
75 76 1.948145 AGACAGTCTGAAAGTCGTCGT 59.052 47.619 6.91 0.00 37.36 4.34
76 77 2.690173 AGACAGTCTGAAAGTCGTCG 57.310 50.000 6.91 0.00 37.36 5.12
86 87 3.722147 ACTTGTTGTAGCAGACAGTCTG 58.278 45.455 24.34 24.34 46.90 3.51
87 88 4.408182 AACTTGTTGTAGCAGACAGTCT 57.592 40.909 0.00 0.00 39.88 3.24
88 89 5.266242 CAAAACTTGTTGTAGCAGACAGTC 58.734 41.667 0.00 0.00 39.88 3.51
89 90 4.438744 GCAAAACTTGTTGTAGCAGACAGT 60.439 41.667 0.00 0.00 39.88 3.55
90 91 4.037690 GCAAAACTTGTTGTAGCAGACAG 58.962 43.478 0.00 0.00 39.88 3.51
91 92 3.694072 AGCAAAACTTGTTGTAGCAGACA 59.306 39.130 0.00 0.00 35.78 3.41
92 93 4.035675 AGAGCAAAACTTGTTGTAGCAGAC 59.964 41.667 0.00 0.00 0.00 3.51
93 94 4.035558 CAGAGCAAAACTTGTTGTAGCAGA 59.964 41.667 0.00 0.00 0.00 4.26
94 95 4.285292 CAGAGCAAAACTTGTTGTAGCAG 58.715 43.478 0.00 0.00 0.00 4.24
95 96 3.489059 GCAGAGCAAAACTTGTTGTAGCA 60.489 43.478 0.00 0.00 0.00 3.49
96 97 3.045688 GCAGAGCAAAACTTGTTGTAGC 58.954 45.455 0.00 0.00 0.00 3.58
97 98 4.531332 GAGCAGAGCAAAACTTGTTGTAG 58.469 43.478 0.00 0.00 0.00 2.74
98 99 3.315191 GGAGCAGAGCAAAACTTGTTGTA 59.685 43.478 0.00 0.00 0.00 2.41
99 100 2.099756 GGAGCAGAGCAAAACTTGTTGT 59.900 45.455 0.00 0.00 0.00 3.32
100 101 2.735823 GGAGCAGAGCAAAACTTGTTG 58.264 47.619 0.00 0.00 0.00 3.33
101 102 1.334869 CGGAGCAGAGCAAAACTTGTT 59.665 47.619 0.00 0.00 0.00 2.83
102 103 0.947244 CGGAGCAGAGCAAAACTTGT 59.053 50.000 0.00 0.00 0.00 3.16
103 104 1.229428 TCGGAGCAGAGCAAAACTTG 58.771 50.000 0.00 0.00 0.00 3.16
104 105 1.808945 CATCGGAGCAGAGCAAAACTT 59.191 47.619 0.00 0.00 0.00 2.66
105 106 1.002430 TCATCGGAGCAGAGCAAAACT 59.998 47.619 0.00 0.00 0.00 2.66
106 107 1.396301 CTCATCGGAGCAGAGCAAAAC 59.604 52.381 0.00 0.00 33.67 2.43
107 108 1.676916 CCTCATCGGAGCAGAGCAAAA 60.677 52.381 0.00 0.00 39.96 2.44
108 109 0.107993 CCTCATCGGAGCAGAGCAAA 60.108 55.000 0.00 0.00 39.96 3.68
109 110 1.519246 CCTCATCGGAGCAGAGCAA 59.481 57.895 0.00 0.00 39.96 3.91
110 111 2.429767 CCCTCATCGGAGCAGAGCA 61.430 63.158 0.00 0.00 39.96 4.26
111 112 2.086251 CTCCCTCATCGGAGCAGAGC 62.086 65.000 0.00 0.00 43.01 4.09
112 113 2.040330 CTCCCTCATCGGAGCAGAG 58.960 63.158 0.00 0.00 43.01 3.35
113 114 4.266962 CTCCCTCATCGGAGCAGA 57.733 61.111 0.00 0.00 43.01 4.26
118 119 0.982852 ATTGCACCTCCCTCATCGGA 60.983 55.000 0.00 0.00 33.16 4.55
119 120 0.107017 AATTGCACCTCCCTCATCGG 60.107 55.000 0.00 0.00 0.00 4.18
120 121 1.019673 CAATTGCACCTCCCTCATCG 58.980 55.000 0.00 0.00 0.00 3.84
121 122 0.743097 GCAATTGCACCTCCCTCATC 59.257 55.000 25.36 0.00 41.59 2.92
122 123 1.033746 CGCAATTGCACCTCCCTCAT 61.034 55.000 28.77 0.00 42.21 2.90
123 124 1.675310 CGCAATTGCACCTCCCTCA 60.675 57.895 28.77 0.00 42.21 3.86
124 125 2.409870 CCGCAATTGCACCTCCCTC 61.410 63.158 28.77 0.00 42.21 4.30
125 126 2.361610 CCGCAATTGCACCTCCCT 60.362 61.111 28.77 0.00 42.21 4.20
126 127 2.361104 TCCGCAATTGCACCTCCC 60.361 61.111 28.77 0.00 42.21 4.30
127 128 2.877691 GTCCGCAATTGCACCTCC 59.122 61.111 28.77 8.76 42.21 4.30
128 129 2.325082 ACGTCCGCAATTGCACCTC 61.325 57.895 28.77 14.70 42.21 3.85
129 130 2.281484 ACGTCCGCAATTGCACCT 60.281 55.556 28.77 8.65 42.21 4.00
130 131 2.126888 CACGTCCGCAATTGCACC 60.127 61.111 28.77 14.76 42.21 5.01
131 132 2.800746 GCACGTCCGCAATTGCAC 60.801 61.111 28.77 19.13 42.21 4.57
132 133 4.036804 GGCACGTCCGCAATTGCA 62.037 61.111 28.77 8.86 42.21 4.08
133 134 3.267597 AAGGCACGTCCGCAATTGC 62.268 57.895 20.76 20.76 40.77 3.56
134 135 1.154225 GAAGGCACGTCCGCAATTG 60.154 57.895 0.00 0.00 40.77 2.32
135 136 2.677003 CGAAGGCACGTCCGCAATT 61.677 57.895 0.00 0.00 40.77 2.32
136 137 3.118454 CGAAGGCACGTCCGCAAT 61.118 61.111 0.00 0.00 40.77 3.56
149 150 0.389166 AGAACTGAAGCGAGCCGAAG 60.389 55.000 0.00 0.00 0.00 3.79
150 151 0.033504 AAGAACTGAAGCGAGCCGAA 59.966 50.000 0.00 0.00 0.00 4.30
151 152 0.885879 TAAGAACTGAAGCGAGCCGA 59.114 50.000 0.00 0.00 0.00 5.54
152 153 1.927895 ATAAGAACTGAAGCGAGCCG 58.072 50.000 0.00 0.00 0.00 5.52
153 154 4.149046 CGATTATAAGAACTGAAGCGAGCC 59.851 45.833 0.00 0.00 32.76 4.70
154 155 4.740695 ACGATTATAAGAACTGAAGCGAGC 59.259 41.667 0.00 0.00 34.93 5.03
155 156 5.114273 CGACGATTATAAGAACTGAAGCGAG 59.886 44.000 0.00 0.00 34.93 5.03
156 157 4.968181 CGACGATTATAAGAACTGAAGCGA 59.032 41.667 0.00 0.00 34.93 4.93
157 158 4.374112 GCGACGATTATAAGAACTGAAGCG 60.374 45.833 0.00 0.00 36.79 4.68
158 159 4.740695 AGCGACGATTATAAGAACTGAAGC 59.259 41.667 0.00 0.00 0.00 3.86
159 160 7.353497 TCTAGCGACGATTATAAGAACTGAAG 58.647 38.462 0.00 0.00 0.00 3.02
160 161 7.255491 TCTAGCGACGATTATAAGAACTGAA 57.745 36.000 0.00 0.00 0.00 3.02
161 162 6.856135 TCTAGCGACGATTATAAGAACTGA 57.144 37.500 0.00 0.00 0.00 3.41
162 163 6.524933 CCATCTAGCGACGATTATAAGAACTG 59.475 42.308 0.00 0.00 0.00 3.16
163 164 6.207025 ACCATCTAGCGACGATTATAAGAACT 59.793 38.462 0.00 0.00 0.00 3.01
164 165 6.380190 ACCATCTAGCGACGATTATAAGAAC 58.620 40.000 0.00 0.00 0.00 3.01
165 166 6.430308 AGACCATCTAGCGACGATTATAAGAA 59.570 38.462 0.00 0.00 0.00 2.52
166 167 5.938710 AGACCATCTAGCGACGATTATAAGA 59.061 40.000 0.00 0.00 0.00 2.10
167 168 6.184580 AGACCATCTAGCGACGATTATAAG 57.815 41.667 0.00 0.00 0.00 1.73
168 169 7.551617 TGATAGACCATCTAGCGACGATTATAA 59.448 37.037 0.00 0.00 38.15 0.98
169 170 7.046033 TGATAGACCATCTAGCGACGATTATA 58.954 38.462 0.00 0.00 38.15 0.98
170 171 5.880887 TGATAGACCATCTAGCGACGATTAT 59.119 40.000 0.00 0.00 38.15 1.28
171 172 5.243207 TGATAGACCATCTAGCGACGATTA 58.757 41.667 0.00 0.00 38.15 1.75
172 173 4.072839 TGATAGACCATCTAGCGACGATT 58.927 43.478 0.00 0.00 38.15 3.34
173 174 3.676093 TGATAGACCATCTAGCGACGAT 58.324 45.455 0.00 0.00 38.15 3.73
174 175 3.121738 TGATAGACCATCTAGCGACGA 57.878 47.619 0.00 0.00 38.15 4.20
175 176 3.898517 TTGATAGACCATCTAGCGACG 57.101 47.619 0.00 0.00 38.15 5.12
176 177 5.986135 ACAAATTGATAGACCATCTAGCGAC 59.014 40.000 0.00 0.00 38.15 5.19
177 178 6.161855 ACAAATTGATAGACCATCTAGCGA 57.838 37.500 0.00 0.00 38.15 4.93
178 179 7.600375 ACATACAAATTGATAGACCATCTAGCG 59.400 37.037 0.00 0.00 38.15 4.26
179 180 8.839310 ACATACAAATTGATAGACCATCTAGC 57.161 34.615 0.00 0.00 36.02 3.42
213 214 9.237187 TGATAGCACAACAAATACCAGAAATAA 57.763 29.630 0.00 0.00 0.00 1.40
214 215 8.800370 TGATAGCACAACAAATACCAGAAATA 57.200 30.769 0.00 0.00 0.00 1.40
215 216 7.701539 TGATAGCACAACAAATACCAGAAAT 57.298 32.000 0.00 0.00 0.00 2.17
216 217 7.392953 TCATGATAGCACAACAAATACCAGAAA 59.607 33.333 0.00 0.00 0.00 2.52
217 218 6.883756 TCATGATAGCACAACAAATACCAGAA 59.116 34.615 0.00 0.00 0.00 3.02
218 219 6.413892 TCATGATAGCACAACAAATACCAGA 58.586 36.000 0.00 0.00 0.00 3.86
219 220 6.682423 TCATGATAGCACAACAAATACCAG 57.318 37.500 0.00 0.00 0.00 4.00
220 221 7.338957 TCAATCATGATAGCACAACAAATACCA 59.661 33.333 9.04 0.00 0.00 3.25
221 222 7.706159 TCAATCATGATAGCACAACAAATACC 58.294 34.615 9.04 0.00 0.00 2.73
222 223 9.229784 CTTCAATCATGATAGCACAACAAATAC 57.770 33.333 9.04 0.00 34.96 1.89
223 224 9.176460 TCTTCAATCATGATAGCACAACAAATA 57.824 29.630 9.04 0.00 34.96 1.40
224 225 8.058667 TCTTCAATCATGATAGCACAACAAAT 57.941 30.769 9.04 0.00 34.96 2.32
225 226 7.451501 TCTTCAATCATGATAGCACAACAAA 57.548 32.000 9.04 0.00 34.96 2.83
226 227 7.634671 ATCTTCAATCATGATAGCACAACAA 57.365 32.000 9.04 0.00 34.96 2.83
227 228 8.735692 TTATCTTCAATCATGATAGCACAACA 57.264 30.769 9.04 0.00 34.96 3.33
230 231 8.789762 CCATTTATCTTCAATCATGATAGCACA 58.210 33.333 9.04 0.00 34.96 4.57
231 232 9.006839 TCCATTTATCTTCAATCATGATAGCAC 57.993 33.333 9.04 0.00 34.96 4.40
232 233 9.749340 ATCCATTTATCTTCAATCATGATAGCA 57.251 29.630 9.04 0.00 34.96 3.49
235 236 9.387257 CCGATCCATTTATCTTCAATCATGATA 57.613 33.333 9.04 0.00 34.96 2.15
236 237 8.105197 TCCGATCCATTTATCTTCAATCATGAT 58.895 33.333 1.18 1.18 34.96 2.45
237 238 7.452562 TCCGATCCATTTATCTTCAATCATGA 58.547 34.615 0.00 0.00 0.00 3.07
238 239 7.677454 TCCGATCCATTTATCTTCAATCATG 57.323 36.000 0.00 0.00 0.00 3.07
239 240 7.094463 GCTTCCGATCCATTTATCTTCAATCAT 60.094 37.037 0.00 0.00 0.00 2.45
240 241 6.205464 GCTTCCGATCCATTTATCTTCAATCA 59.795 38.462 0.00 0.00 0.00 2.57
241 242 6.429385 AGCTTCCGATCCATTTATCTTCAATC 59.571 38.462 0.00 0.00 0.00 2.67
242 243 6.302269 AGCTTCCGATCCATTTATCTTCAAT 58.698 36.000 0.00 0.00 0.00 2.57
243 244 5.684704 AGCTTCCGATCCATTTATCTTCAA 58.315 37.500 0.00 0.00 0.00 2.69
244 245 5.296151 AGCTTCCGATCCATTTATCTTCA 57.704 39.130 0.00 0.00 0.00 3.02
245 246 6.484977 AGAAAGCTTCCGATCCATTTATCTTC 59.515 38.462 0.00 0.00 0.00 2.87
246 247 6.360618 AGAAAGCTTCCGATCCATTTATCTT 58.639 36.000 0.00 0.00 0.00 2.40
247 248 5.934781 AGAAAGCTTCCGATCCATTTATCT 58.065 37.500 0.00 0.00 0.00 1.98
248 249 5.107298 CGAGAAAGCTTCCGATCCATTTATC 60.107 44.000 0.00 0.00 0.00 1.75
249 250 4.752101 CGAGAAAGCTTCCGATCCATTTAT 59.248 41.667 0.00 0.00 0.00 1.40
250 251 4.119862 CGAGAAAGCTTCCGATCCATTTA 58.880 43.478 0.00 0.00 0.00 1.40
251 252 2.939103 CGAGAAAGCTTCCGATCCATTT 59.061 45.455 0.00 0.00 0.00 2.32
252 253 2.555199 CGAGAAAGCTTCCGATCCATT 58.445 47.619 0.00 0.00 0.00 3.16
253 254 1.808133 GCGAGAAAGCTTCCGATCCAT 60.808 52.381 16.59 0.00 0.00 3.41
254 255 0.460284 GCGAGAAAGCTTCCGATCCA 60.460 55.000 16.59 0.00 0.00 3.41
255 256 1.154814 GGCGAGAAAGCTTCCGATCC 61.155 60.000 16.59 5.84 37.29 3.36
256 257 0.460284 TGGCGAGAAAGCTTCCGATC 60.460 55.000 16.59 4.21 37.29 3.69
257 258 0.036388 TTGGCGAGAAAGCTTCCGAT 60.036 50.000 16.59 0.00 37.29 4.18
258 259 0.250124 TTTGGCGAGAAAGCTTCCGA 60.250 50.000 16.59 3.92 37.29 4.55
259 260 0.591170 TTTTGGCGAGAAAGCTTCCG 59.409 50.000 0.00 5.44 37.29 4.30
260 261 2.793278 TTTTTGGCGAGAAAGCTTCC 57.207 45.000 0.00 0.00 37.29 3.46
276 277 9.665719 AGACAATAGAAACAAACAACCATTTTT 57.334 25.926 0.00 0.00 0.00 1.94
278 279 9.744468 GTAGACAATAGAAACAAACAACCATTT 57.256 29.630 0.00 0.00 0.00 2.32
279 280 8.908903 TGTAGACAATAGAAACAAACAACCATT 58.091 29.630 0.00 0.00 0.00 3.16
280 281 8.458573 TGTAGACAATAGAAACAAACAACCAT 57.541 30.769 0.00 0.00 0.00 3.55
281 282 7.867305 TGTAGACAATAGAAACAAACAACCA 57.133 32.000 0.00 0.00 0.00 3.67
293 294 9.990360 TGAACACAGTTTTATGTAGACAATAGA 57.010 29.630 0.00 0.00 0.00 1.98
297 298 9.337396 AGATTGAACACAGTTTTATGTAGACAA 57.663 29.630 0.00 0.00 0.00 3.18
298 299 8.902540 AGATTGAACACAGTTTTATGTAGACA 57.097 30.769 0.00 0.00 0.00 3.41
306 307 9.944663 GTTGACATTAGATTGAACACAGTTTTA 57.055 29.630 0.00 0.00 0.00 1.52
307 308 8.465999 TGTTGACATTAGATTGAACACAGTTTT 58.534 29.630 0.00 0.00 0.00 2.43
308 309 7.995289 TGTTGACATTAGATTGAACACAGTTT 58.005 30.769 0.00 0.00 0.00 2.66
309 310 7.283127 ACTGTTGACATTAGATTGAACACAGTT 59.717 33.333 0.00 0.00 0.00 3.16
310 311 6.767902 ACTGTTGACATTAGATTGAACACAGT 59.232 34.615 0.00 0.00 0.00 3.55
311 312 7.194607 ACTGTTGACATTAGATTGAACACAG 57.805 36.000 0.00 0.00 0.00 3.66
312 313 7.566760 AACTGTTGACATTAGATTGAACACA 57.433 32.000 0.00 0.00 0.00 3.72
313 314 7.746475 GCTAACTGTTGACATTAGATTGAACAC 59.254 37.037 2.69 0.00 0.00 3.32
314 315 7.443879 TGCTAACTGTTGACATTAGATTGAACA 59.556 33.333 2.69 0.00 0.00 3.18
315 316 7.806690 TGCTAACTGTTGACATTAGATTGAAC 58.193 34.615 2.69 0.00 0.00 3.18
316 317 7.661437 ACTGCTAACTGTTGACATTAGATTGAA 59.339 33.333 2.69 0.00 0.00 2.69
317 318 7.161404 ACTGCTAACTGTTGACATTAGATTGA 58.839 34.615 2.69 0.00 0.00 2.57
318 319 7.369803 ACTGCTAACTGTTGACATTAGATTG 57.630 36.000 2.69 0.00 0.00 2.67
319 320 8.936864 GTTACTGCTAACTGTTGACATTAGATT 58.063 33.333 2.69 0.00 31.04 2.40
320 321 8.094548 TGTTACTGCTAACTGTTGACATTAGAT 58.905 33.333 2.69 5.15 34.38 1.98
321 322 7.438564 TGTTACTGCTAACTGTTGACATTAGA 58.561 34.615 2.69 0.00 34.38 2.10
322 323 7.652300 TGTTACTGCTAACTGTTGACATTAG 57.348 36.000 2.69 0.00 34.38 1.73
323 324 8.339714 GTTTGTTACTGCTAACTGTTGACATTA 58.660 33.333 2.69 0.00 34.38 1.90
324 325 6.935741 TTGTTACTGCTAACTGTTGACATT 57.064 33.333 2.69 0.00 34.38 2.71
325 326 6.317642 TGTTTGTTACTGCTAACTGTTGACAT 59.682 34.615 2.69 0.00 34.38 3.06
326 327 5.644206 TGTTTGTTACTGCTAACTGTTGACA 59.356 36.000 2.69 0.38 34.38 3.58
327 328 6.114221 TGTTTGTTACTGCTAACTGTTGAC 57.886 37.500 2.69 0.00 34.38 3.18
328 329 6.403855 GGTTGTTTGTTACTGCTAACTGTTGA 60.404 38.462 2.69 0.00 34.38 3.18
329 330 5.741982 GGTTGTTTGTTACTGCTAACTGTTG 59.258 40.000 2.69 0.00 34.38 3.33
330 331 5.650703 AGGTTGTTTGTTACTGCTAACTGTT 59.349 36.000 0.00 0.00 34.38 3.16
331 332 5.065988 CAGGTTGTTTGTTACTGCTAACTGT 59.934 40.000 0.00 0.00 34.38 3.55
332 333 5.295787 TCAGGTTGTTTGTTACTGCTAACTG 59.704 40.000 0.00 0.00 34.38 3.16
333 334 5.433526 TCAGGTTGTTTGTTACTGCTAACT 58.566 37.500 0.00 0.00 34.38 2.24
334 335 5.744666 TCAGGTTGTTTGTTACTGCTAAC 57.255 39.130 0.00 0.00 33.92 2.34
343 344 6.378280 ACAGAGAGAATTTCAGGTTGTTTGTT 59.622 34.615 0.00 0.00 0.00 2.83
352 353 6.874288 AAAACTGACAGAGAGAATTTCAGG 57.126 37.500 10.08 0.00 38.42 3.86
377 378 2.814919 TCGTCAAAGTGAGAGAGGAGAC 59.185 50.000 0.00 0.00 0.00 3.36
612 617 1.160329 CGTTCCAGATCCGGGAATGC 61.160 60.000 18.09 8.07 45.55 3.56
615 620 3.305314 CCGTTCCAGATCCGGGAA 58.695 61.111 11.41 11.41 41.98 3.97
670 675 1.226717 CGAACCGACTAGAGGCAGC 60.227 63.158 0.00 0.00 0.00 5.25
712 717 3.842925 TTCCCTGCGCTGGTCAACC 62.843 63.158 28.74 0.00 0.00 3.77
725 730 1.420532 TACCAACCGCCAACTTCCCT 61.421 55.000 0.00 0.00 0.00 4.20
777 818 6.599638 CCTCCCTTTTCTAACAAGAGTAATGG 59.400 42.308 0.00 0.00 0.00 3.16
779 820 7.569599 TCCTCCCTTTTCTAACAAGAGTAAT 57.430 36.000 0.00 0.00 0.00 1.89
781 822 6.013639 CCTTCCTCCCTTTTCTAACAAGAGTA 60.014 42.308 0.00 0.00 0.00 2.59
782 823 5.221945 CCTTCCTCCCTTTTCTAACAAGAGT 60.222 44.000 0.00 0.00 0.00 3.24
783 824 5.249420 CCTTCCTCCCTTTTCTAACAAGAG 58.751 45.833 0.00 0.00 0.00 2.85
784 825 4.506802 GCCTTCCTCCCTTTTCTAACAAGA 60.507 45.833 0.00 0.00 0.00 3.02
785 826 3.759086 GCCTTCCTCCCTTTTCTAACAAG 59.241 47.826 0.00 0.00 0.00 3.16
786 827 3.763057 GCCTTCCTCCCTTTTCTAACAA 58.237 45.455 0.00 0.00 0.00 2.83
787 828 2.290071 CGCCTTCCTCCCTTTTCTAACA 60.290 50.000 0.00 0.00 0.00 2.41
788 829 2.357075 CGCCTTCCTCCCTTTTCTAAC 58.643 52.381 0.00 0.00 0.00 2.34
807 848 0.931005 GCTATTTCTGCCTCGTTCCG 59.069 55.000 0.00 0.00 0.00 4.30
857 898 6.034591 CAGATTTCTCTCATTGTTTCCATGC 58.965 40.000 0.00 0.00 0.00 4.06
867 908 5.950883 CACATGTTGCAGATTTCTCTCATT 58.049 37.500 0.00 0.00 0.00 2.57
892 933 3.451178 ACATGGTGTAGTAAGGTAGGCAG 59.549 47.826 0.00 0.00 0.00 4.85
909 950 4.110036 TCTTCACATAGTGACGACATGG 57.890 45.455 0.00 0.00 42.60 3.66
952 995 1.375396 TCTGAACCGGCGAACATGG 60.375 57.895 9.30 0.00 0.00 3.66
1034 1077 3.181502 GCTTGCTAATGAAGGCTGAAGTC 60.182 47.826 0.00 0.00 0.00 3.01
1037 1080 2.094675 GGCTTGCTAATGAAGGCTGAA 58.905 47.619 0.00 0.00 41.56 3.02
1060 1153 0.608130 ATCGCAGATATGCCGGCTAA 59.392 50.000 29.70 16.29 45.12 3.09
1066 1159 2.215907 ATAGCGATCGCAGATATGCC 57.784 50.000 38.60 9.13 45.12 4.40
1082 1175 2.156098 GTCGGCCCTCTCTCAGTATAG 58.844 57.143 0.00 0.00 0.00 1.31
1088 1181 0.324738 AAGATGTCGGCCCTCTCTCA 60.325 55.000 0.00 0.00 0.00 3.27
1092 1185 0.253327 GGAAAAGATGTCGGCCCTCT 59.747 55.000 0.00 0.00 0.00 3.69
1094 1187 1.303282 GGGAAAAGATGTCGGCCCT 59.697 57.895 0.00 0.00 32.78 5.19
1095 1188 1.753078 GGGGAAAAGATGTCGGCCC 60.753 63.158 0.00 0.00 34.79 5.80
1096 1189 0.395724 ATGGGGAAAAGATGTCGGCC 60.396 55.000 0.00 0.00 0.00 6.13
1097 1190 0.740737 CATGGGGAAAAGATGTCGGC 59.259 55.000 0.00 0.00 0.00 5.54
1098 1191 1.064758 TCCATGGGGAAAAGATGTCGG 60.065 52.381 13.02 0.00 41.32 4.79
1099 1192 2.292267 CTCCATGGGGAAAAGATGTCG 58.708 52.381 5.34 0.00 44.38 4.35
1182 1281 4.500116 GTCCTGAGAGCGACGGCC 62.500 72.222 0.00 0.00 41.24 6.13
1204 1303 1.216710 GGAGCTCGTCAGAGTTGGG 59.783 63.158 7.83 0.00 46.03 4.12
1229 1328 0.842030 TCTGCCATGAAGGAGTGGGT 60.842 55.000 0.00 0.00 41.22 4.51
1232 1331 1.815003 GGTTTCTGCCATGAAGGAGTG 59.185 52.381 0.00 0.00 41.22 3.51
1238 1337 3.517296 TTACCAGGTTTCTGCCATGAA 57.483 42.857 0.00 0.00 39.61 2.57
1266 1365 6.096282 ACAGTAAAAGCCAAAAGTGTATGTGT 59.904 34.615 0.00 0.00 0.00 3.72
1269 1368 9.691362 ATTAACAGTAAAAGCCAAAAGTGTATG 57.309 29.630 0.00 0.00 0.00 2.39
1299 1398 9.809096 ATTATTAGTGTGAGTTGAGTGATACAG 57.191 33.333 0.00 0.00 0.00 2.74
1393 1492 4.338682 GGAAGAAATGAGCTTCAGCATCAT 59.661 41.667 0.75 4.99 42.68 2.45
1394 1493 3.693085 GGAAGAAATGAGCTTCAGCATCA 59.307 43.478 0.75 2.84 42.68 3.07
1395 1494 3.946558 AGGAAGAAATGAGCTTCAGCATC 59.053 43.478 0.75 0.00 42.68 3.91
1396 1495 3.965694 AGGAAGAAATGAGCTTCAGCAT 58.034 40.909 0.75 0.00 42.68 3.79
1409 1511 2.692709 TGGCATTGGGAAGGAAGAAA 57.307 45.000 0.00 0.00 0.00 2.52
1441 1543 6.917477 GTGTACATTGACATTTTTCTCAGCAA 59.083 34.615 0.00 0.00 0.00 3.91
1453 1555 2.832129 AGAGGTCGGTGTACATTGACAT 59.168 45.455 23.54 19.51 33.04 3.06
1454 1556 2.244695 AGAGGTCGGTGTACATTGACA 58.755 47.619 23.54 0.00 33.04 3.58
1463 1565 2.530701 AGATCAGAAAGAGGTCGGTGT 58.469 47.619 0.00 0.00 0.00 4.16
1467 1569 3.056536 TGGTGAAGATCAGAAAGAGGTCG 60.057 47.826 0.00 0.00 0.00 4.79
1513 1615 1.930908 GCTGGGCATCACAGAGCAAC 61.931 60.000 0.00 0.00 38.20 4.17
1517 1619 1.451567 CTGGCTGGGCATCACAGAG 60.452 63.158 0.00 0.00 38.20 3.35
1640 1987 7.044798 GCATTACAGAACTGGAAGAATAGAGT 58.955 38.462 5.70 0.00 36.75 3.24
1661 2008 3.272574 ACATTCAGACTCATCGGCATT 57.727 42.857 0.00 0.00 0.00 3.56
1697 2044 5.989777 TGAAACTGACAAACCTAGCTTCTAC 59.010 40.000 0.00 0.00 0.00 2.59
1757 2104 1.878734 TGACATTGTGATTCTGCGCAA 59.121 42.857 13.05 0.00 41.85 4.85
1800 2147 3.254166 CGGAGGGATTAGCATTTGATTGG 59.746 47.826 0.00 0.00 0.00 3.16
1948 2296 1.761198 TGTCATGATCAGCAGAGGGAG 59.239 52.381 0.00 0.00 0.00 4.30
2031 2388 5.152623 TCACGTTGATCTTCCTTTCATCT 57.847 39.130 0.00 0.00 0.00 2.90
2120 2477 3.418675 TCGGAAGAGCGATTGTCAC 57.581 52.632 0.00 0.00 34.84 3.67
2144 2501 0.322456 CTGAACTTTGGATGCGGGGA 60.322 55.000 0.00 0.00 0.00 4.81
2223 2580 2.011122 TGGACGGGAGAAGAACTCTT 57.989 50.000 0.00 0.00 44.37 2.85
2412 2769 1.726791 ACGCAGCGAAGTATGTCTTTG 59.273 47.619 24.65 0.00 39.78 2.77
2418 2775 3.735746 TCAATATGACGCAGCGAAGTATG 59.264 43.478 24.65 12.73 0.00 2.39
2698 3055 3.731089 CAGCCAAACCATGACAAAACAT 58.269 40.909 0.00 0.00 0.00 2.71
2707 3064 1.822990 AGAATCAGCAGCCAAACCATG 59.177 47.619 0.00 0.00 0.00 3.66
2862 3219 9.186837 ACAAATATAAGAGACGAGAACTAGGAA 57.813 33.333 0.00 0.00 0.00 3.36
2919 3280 5.163774 GGAAAGAATAGCTGCAACAGAGAAG 60.164 44.000 1.02 0.00 32.44 2.85
2922 3283 4.260170 AGGAAAGAATAGCTGCAACAGAG 58.740 43.478 1.02 0.00 32.44 3.35
2956 3317 6.507771 CGACAACAAATAAAAACCAGTGCTTG 60.508 38.462 0.00 0.00 0.00 4.01
3102 3463 9.364653 AGATAGTCAATTAATTAGGGAGTACGT 57.635 33.333 0.00 0.00 0.00 3.57
3116 3477 8.531982 CCTCCATCCGAATTAGATAGTCAATTA 58.468 37.037 0.00 0.00 0.00 1.40
3118 3479 6.070538 CCCTCCATCCGAATTAGATAGTCAAT 60.071 42.308 0.00 0.00 0.00 2.57
3120 3481 4.772624 CCCTCCATCCGAATTAGATAGTCA 59.227 45.833 0.00 0.00 0.00 3.41
3122 3483 5.011982 TCCCTCCATCCGAATTAGATAGT 57.988 43.478 0.00 0.00 0.00 2.12
3123 3484 5.020132 ACTCCCTCCATCCGAATTAGATAG 58.980 45.833 0.00 0.00 0.00 2.08
3124 3485 5.011982 ACTCCCTCCATCCGAATTAGATA 57.988 43.478 0.00 0.00 0.00 1.98
3125 3486 3.863086 ACTCCCTCCATCCGAATTAGAT 58.137 45.455 0.00 0.00 0.00 1.98
3126 3487 3.330126 ACTCCCTCCATCCGAATTAGA 57.670 47.619 0.00 0.00 0.00 2.10
3127 3488 3.511934 CCTACTCCCTCCATCCGAATTAG 59.488 52.174 0.00 0.00 0.00 1.73
3128 3489 3.116862 ACCTACTCCCTCCATCCGAATTA 60.117 47.826 0.00 0.00 0.00 1.40
3129 3490 2.330216 CCTACTCCCTCCATCCGAATT 58.670 52.381 0.00 0.00 0.00 2.17
3130 3491 1.220750 ACCTACTCCCTCCATCCGAAT 59.779 52.381 0.00 0.00 0.00 3.34
3131 3492 0.635009 ACCTACTCCCTCCATCCGAA 59.365 55.000 0.00 0.00 0.00 4.30
3132 3493 0.635009 AACCTACTCCCTCCATCCGA 59.365 55.000 0.00 0.00 0.00 4.55
3133 3494 1.497161 AAACCTACTCCCTCCATCCG 58.503 55.000 0.00 0.00 0.00 4.18
3152 3513 7.972832 ATCGTTGAAGGTGAACATACTAAAA 57.027 32.000 0.00 0.00 0.00 1.52
3186 3547 8.574251 ACCTAAATTACAACACATCAGCATTA 57.426 30.769 0.00 0.00 0.00 1.90
3221 3582 8.160765 TCAACTATCTCCTTCCACAAATGTTTA 58.839 33.333 0.00 0.00 0.00 2.01
3402 3780 4.156455 AGACACCGCAATCATTCCTAAT 57.844 40.909 0.00 0.00 0.00 1.73
3621 4004 2.012673 GCCAGACATACTTGGCAAGAG 58.987 52.381 32.50 22.02 40.18 2.85
3624 4007 1.350684 TCAGCCAGACATACTTGGCAA 59.649 47.619 16.84 0.00 41.66 4.52
3628 4011 5.877012 ACTAAACATCAGCCAGACATACTTG 59.123 40.000 0.00 0.00 0.00 3.16
3657 4042 4.070716 CTGCAGAAAAGGACAGAACAGAT 58.929 43.478 8.42 0.00 31.67 2.90
3833 4222 2.350899 TCACAATTTTCTGCGGCATG 57.649 45.000 1.75 0.00 0.00 4.06
3834 4223 3.598019 AATCACAATTTTCTGCGGCAT 57.402 38.095 1.75 0.00 0.00 4.40
3903 4293 3.487376 CGCCAATGTTTACTGCACCATAG 60.487 47.826 0.00 0.00 0.00 2.23
3995 4732 5.413523 CACAGATTCTTCATGTGGTGATTGA 59.586 40.000 0.00 0.00 40.47 2.57
4005 6269 3.615937 CAGACGTCCACAGATTCTTCATG 59.384 47.826 13.01 0.00 0.00 3.07
4052 6698 5.134661 TGATCAGATGCATGCTTAATGGAA 58.865 37.500 20.33 0.00 40.37 3.53
4065 6716 2.411160 CGATGCACGAATGATCAGATGC 60.411 50.000 13.50 13.50 45.77 3.91
4157 7707 4.952335 ACTCCCATTTTCTAGCTTCCATTG 59.048 41.667 0.00 0.00 0.00 2.82
4159 7709 4.870021 ACTCCCATTTTCTAGCTTCCAT 57.130 40.909 0.00 0.00 0.00 3.41
4177 7728 2.548904 GCAGCATCATCTCCATGAACTC 59.451 50.000 0.00 0.00 42.53 3.01
4190 7741 4.074259 ACACTGTCTAAAATGCAGCATCA 58.926 39.130 8.77 0.00 33.87 3.07
4252 7807 0.109723 TTAGAGCCCACAAAACGCCT 59.890 50.000 0.00 0.00 0.00 5.52
4283 7843 6.595716 ACTTAGAGAACATGATTGGTAAGTGC 59.404 38.462 0.00 0.00 30.28 4.40
4508 8098 4.881273 TGATTATGCAACGTAGCCTTCATT 59.119 37.500 0.00 0.00 0.00 2.57
4601 8209 5.237344 CGATCCCTAAATGACCAAATCACTC 59.763 44.000 0.00 0.00 41.24 3.51
4655 8267 2.069273 GCAGCATCTTACGAGTTGTGT 58.931 47.619 0.00 0.00 0.00 3.72
4715 8327 0.837272 TGGTTGATCGGAGGATTCCC 59.163 55.000 0.00 0.00 40.67 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.