Multiple sequence alignment - TraesCS7B01G062100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G062100 chr7B 100.000 5050 0 0 1 5050 64730459 64725410 0.000000e+00 9326.0
1 TraesCS7B01G062100 chr7B 88.817 465 50 2 55 519 452233067 452233529 2.040000e-158 569.0
2 TraesCS7B01G062100 chr7B 93.220 59 4 0 2 60 452232992 452233050 2.500000e-13 87.9
3 TraesCS7B01G062100 chr7B 97.368 38 1 0 4354 4391 64726072 64726035 1.170000e-06 65.8
4 TraesCS7B01G062100 chr7B 97.368 38 1 0 4388 4425 64726106 64726069 1.170000e-06 65.8
5 TraesCS7B01G062100 chr7D 95.225 3267 117 22 519 3753 106077453 106074194 0.000000e+00 5132.0
6 TraesCS7B01G062100 chr7D 96.894 644 20 0 3748 4391 106074167 106073524 0.000000e+00 1079.0
7 TraesCS7B01G062100 chr7D 81.350 563 80 18 3832 4382 106000416 105999867 7.760000e-118 435.0
8 TraesCS7B01G062100 chr7D 90.847 295 15 2 4388 4680 106073561 106073277 7.930000e-103 385.0
9 TraesCS7B01G062100 chr7A 95.049 3191 122 20 595 3753 110855084 110851898 0.000000e+00 4985.0
10 TraesCS7B01G062100 chr7A 95.153 619 25 3 3748 4363 110851871 110851255 0.000000e+00 972.0
11 TraesCS7B01G062100 chr7A 82.390 477 69 11 3832 4301 110762169 110761701 7.880000e-108 401.0
12 TraesCS7B01G062100 chr7A 91.781 73 6 0 4608 4680 110851261 110851189 8.940000e-18 102.0
13 TraesCS7B01G062100 chr5A 98.459 519 8 0 2 520 666926044 666925526 0.000000e+00 915.0
14 TraesCS7B01G062100 chr5B 97.679 517 12 0 4 520 616760293 616759777 0.000000e+00 889.0
15 TraesCS7B01G062100 chr5B 96.139 518 20 0 2 519 676723616 676723099 0.000000e+00 846.0
16 TraesCS7B01G062100 chr5B 82.749 371 56 7 4682 5050 626191224 626190860 1.750000e-84 324.0
17 TraesCS7B01G062100 chr3A 96.705 516 16 1 2 517 250149240 250148726 0.000000e+00 857.0
18 TraesCS7B01G062100 chr3A 80.381 367 57 14 4682 5043 32237538 32237182 1.080000e-66 265.0
19 TraesCS7B01G062100 chr3B 96.339 519 19 0 2 520 177170102 177169584 0.000000e+00 854.0
20 TraesCS7B01G062100 chr3B 85.135 370 48 6 4682 5050 241670648 241670285 6.170000e-99 372.0
21 TraesCS7B01G062100 chr2A 95.946 518 21 0 3 520 753241590 753242107 0.000000e+00 841.0
22 TraesCS7B01G062100 chr2A 93.023 43 3 0 2783 2825 341928076 341928118 4.220000e-06 63.9
23 TraesCS7B01G062100 chr2A 93.023 43 3 0 2783 2825 341928176 341928218 4.220000e-06 63.9
24 TraesCS7B01G062100 chr5D 92.857 518 37 0 2 519 179915491 179916008 0.000000e+00 752.0
25 TraesCS7B01G062100 chr3D 92.233 412 31 1 110 520 406177821 406177410 2.620000e-162 582.0
26 TraesCS7B01G062100 chr3D 81.989 372 55 11 4682 5050 42768119 42767757 6.350000e-79 305.0
27 TraesCS7B01G062100 chr2B 81.717 361 55 6 4684 5042 784669056 784669407 1.780000e-74 291.0
28 TraesCS7B01G062100 chr2B 81.587 315 40 14 4732 5043 121645840 121645541 1.400000e-60 244.0
29 TraesCS7B01G062100 chr2B 75.140 358 58 17 4682 5031 642949912 642949578 6.820000e-29 139.0
30 TraesCS7B01G062100 chr2B 93.023 43 3 0 2783 2825 314776829 314776787 4.220000e-06 63.9
31 TraesCS7B01G062100 chr1B 80.874 366 56 12 4682 5043 363663242 363663597 4.980000e-70 276.0
32 TraesCS7B01G062100 chr6A 81.902 326 48 9 4723 5043 140207323 140207642 1.080000e-66 265.0
33 TraesCS7B01G062100 chr4A 77.049 366 70 12 4682 5043 310812779 310812424 1.110000e-46 198.0
34 TraesCS7B01G062100 chrUn 93.023 43 3 0 2783 2825 277316285 277316327 4.220000e-06 63.9
35 TraesCS7B01G062100 chr2D 93.023 43 3 0 2783 2825 282927575 282927533 4.220000e-06 63.9
36 TraesCS7B01G062100 chr2D 93.023 43 3 0 2783 2825 282927675 282927633 4.220000e-06 63.9
37 TraesCS7B01G062100 chr1A 93.023 43 3 0 2783 2825 36563525 36563567 4.220000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G062100 chr7B 64725410 64730459 5049 True 9326.000000 9326 100.000000 1 5050 1 chr7B.!!$R1 5049
1 TraesCS7B01G062100 chr7B 452232992 452233529 537 False 328.450000 569 91.018500 2 519 2 chr7B.!!$F1 517
2 TraesCS7B01G062100 chr7D 106073277 106077453 4176 True 2198.666667 5132 94.322000 519 4680 3 chr7D.!!$R2 4161
3 TraesCS7B01G062100 chr7D 105999867 106000416 549 True 435.000000 435 81.350000 3832 4382 1 chr7D.!!$R1 550
4 TraesCS7B01G062100 chr7A 110851189 110855084 3895 True 2019.666667 4985 93.994333 595 4680 3 chr7A.!!$R2 4085
5 TraesCS7B01G062100 chr5A 666925526 666926044 518 True 915.000000 915 98.459000 2 520 1 chr5A.!!$R1 518
6 TraesCS7B01G062100 chr5B 616759777 616760293 516 True 889.000000 889 97.679000 4 520 1 chr5B.!!$R1 516
7 TraesCS7B01G062100 chr5B 676723099 676723616 517 True 846.000000 846 96.139000 2 519 1 chr5B.!!$R3 517
8 TraesCS7B01G062100 chr3A 250148726 250149240 514 True 857.000000 857 96.705000 2 517 1 chr3A.!!$R2 515
9 TraesCS7B01G062100 chr3B 177169584 177170102 518 True 854.000000 854 96.339000 2 520 1 chr3B.!!$R1 518
10 TraesCS7B01G062100 chr2A 753241590 753242107 517 False 841.000000 841 95.946000 3 520 1 chr2A.!!$F1 517
11 TraesCS7B01G062100 chr5D 179915491 179916008 517 False 752.000000 752 92.857000 2 519 1 chr5D.!!$F1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 482 0.387622 CGCACCCAAACAGCTGAATG 60.388 55.000 23.35 17.66 0.00 2.67 F
986 1021 0.696501 GAGGTTGGGGAGGCAAGTTA 59.303 55.000 0.00 0.00 0.00 2.24 F
1058 1093 1.432270 GGCAATTCCGCTTCCGAGAG 61.432 60.000 0.00 0.00 36.29 3.20 F
2018 2053 0.823356 GAAGCACAAGGGGCACTGAA 60.823 55.000 0.00 0.00 0.00 3.02 F
3338 3382 1.961277 GGTGAAGGTGCGTCCACAG 60.961 63.158 0.00 0.00 43.88 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1370 1405 1.153168 CCAGGGGTATCCAACTGCG 60.153 63.158 0.00 0.0 38.24 5.18 R
1932 1967 1.200716 CACATCGCATTTTGCTCCTGT 59.799 47.619 0.00 0.0 42.25 4.00 R
3046 3090 0.384601 GCAAATTTTGGCTTGTGCGC 60.385 50.000 10.96 0.0 40.82 6.09 R
3551 3595 0.458370 GAAACATGCCATTGTCGCCC 60.458 55.000 0.00 0.0 0.00 6.13 R
4699 4808 0.036164 CATCGTCTGTTTGGGGGTCA 59.964 55.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
458 482 0.387622 CGCACCCAAACAGCTGAATG 60.388 55.000 23.35 17.66 0.00 2.67
460 484 1.619654 CACCCAAACAGCTGAATGGA 58.380 50.000 31.00 0.00 34.82 3.41
597 621 7.228706 GGGCACAATAAGCACAATAAGTAGTAT 59.771 37.037 0.00 0.00 34.91 2.12
645 669 4.002316 ACATTTGTGCAAAATATGGTGCC 58.998 39.130 13.11 1.98 40.14 5.01
669 693 7.931948 GCCTCAAGATAGCTTTATAACACCTTA 59.068 37.037 0.00 0.00 30.14 2.69
670 694 9.832445 CCTCAAGATAGCTTTATAACACCTTAA 57.168 33.333 0.00 0.00 30.14 1.85
979 1014 1.908340 CTGAGCAGAGGTTGGGGAGG 61.908 65.000 0.00 0.00 0.00 4.30
986 1021 0.696501 GAGGTTGGGGAGGCAAGTTA 59.303 55.000 0.00 0.00 0.00 2.24
1036 1071 4.803452 TGGTTCTTTCTTTCCTTCATGGT 58.197 39.130 0.00 0.00 37.07 3.55
1058 1093 1.432270 GGCAATTCCGCTTCCGAGAG 61.432 60.000 0.00 0.00 36.29 3.20
1185 1220 3.455910 AGCATGAACAGAACCCTGCTATA 59.544 43.478 0.00 0.00 44.16 1.31
1186 1221 4.080356 AGCATGAACAGAACCCTGCTATAA 60.080 41.667 0.00 0.00 44.16 0.98
1213 1248 2.554272 GGTGCTTGCCGTACAACG 59.446 61.111 0.00 0.00 42.11 4.10
1370 1405 1.995376 ACACCTGGAACATTTGACCC 58.005 50.000 0.00 0.00 38.20 4.46
1494 1529 3.733337 TGTTTCTTCAGCCTCAACTCTC 58.267 45.455 0.00 0.00 0.00 3.20
1576 1611 6.587608 CAGTTTTCAAGGGATACAAAATGCTC 59.412 38.462 0.00 0.00 39.74 4.26
1608 1643 8.175925 TCAACAATACAAGTCATTCAAATGGA 57.824 30.769 3.05 0.00 37.03 3.41
1654 1689 4.712051 ACCATGGCATCACTACATGTAT 57.288 40.909 13.04 0.00 40.16 2.29
1755 1790 6.582636 TGTGGTAATACAGGATAGCAAAGAG 58.417 40.000 0.00 0.00 31.97 2.85
1787 1822 6.058183 GTGGTAGCATCTCATCTTTTGGTAT 58.942 40.000 0.00 0.00 0.00 2.73
1833 1868 2.949447 AGTGGTTTGAAGGCTGAACAT 58.051 42.857 9.81 0.00 0.00 2.71
1850 1885 6.705825 GCTGAACATCAGGTTTTAATTTTGGT 59.294 34.615 9.25 0.00 44.43 3.67
1938 1973 6.164176 ACTTCCTTTGTTCGTATTACAGGAG 58.836 40.000 0.00 0.00 0.00 3.69
2018 2053 0.823356 GAAGCACAAGGGGCACTGAA 60.823 55.000 0.00 0.00 0.00 3.02
2086 2121 9.511144 GTTTCGTTTTATTCTCTTTCTTTGGAA 57.489 29.630 0.00 0.00 0.00 3.53
2130 2165 6.906659 ACTCTGTTTGCAAATGTTCAGATAG 58.093 36.000 22.94 17.07 32.73 2.08
2132 2167 5.183713 TCTGTTTGCAAATGTTCAGATAGGG 59.816 40.000 20.35 2.38 0.00 3.53
2291 2326 4.343526 ACTGACCCTCATAGTATTGCTGAG 59.656 45.833 0.00 0.00 36.89 3.35
2321 2356 9.612620 GTGAGTTATCTTGTTTGGTAAATTCAG 57.387 33.333 0.00 0.00 0.00 3.02
2365 2402 6.989169 TCATAACTTGGGTTGGTTGAATTTTG 59.011 34.615 0.00 0.00 36.92 2.44
2369 2406 4.399004 TGGGTTGGTTGAATTTTGTCTG 57.601 40.909 0.00 0.00 0.00 3.51
2583 2622 9.494271 ACATGCAGTACATTTATATTAGTCCAG 57.506 33.333 0.00 0.00 36.64 3.86
2585 2624 7.735917 TGCAGTACATTTATATTAGTCCAGCT 58.264 34.615 0.00 0.00 0.00 4.24
2684 2723 8.499162 GGATACATATGTGCTGAAGTATTGTTC 58.501 37.037 18.81 0.00 0.00 3.18
2699 2738 6.016555 AGTATTGTTCTAAAATTGGCCCAGT 58.983 36.000 0.00 0.00 0.00 4.00
2702 2741 5.975693 TGTTCTAAAATTGGCCCAGTAAG 57.024 39.130 0.00 0.00 0.00 2.34
2722 2761 2.945668 AGAACTGAAGCAAGTGGTTGTC 59.054 45.455 0.00 0.00 35.69 3.18
2759 2798 7.825627 CTTGAAAAGTGCAAATAACATTTGC 57.174 32.000 23.27 23.27 44.15 3.68
2772 2811 9.612066 CAAATAACATTTGCCCCAAATAGTTAT 57.388 29.630 19.05 19.05 41.40 1.89
2908 2951 5.945784 TCTGCTTAATGTTCTAGGCATGTTT 59.054 36.000 0.00 0.00 33.88 2.83
2911 2954 5.807011 GCTTAATGTTCTAGGCATGTTTTGG 59.193 40.000 0.00 0.00 0.00 3.28
2927 2970 4.021016 TGTTTTGGTTTGTAGCCACACTTT 60.021 37.500 0.00 0.00 35.46 2.66
3020 3063 2.548875 GGCATCACACTTCTCTAGCAG 58.451 52.381 0.00 0.00 0.00 4.24
3025 3068 6.461648 GGCATCACACTTCTCTAGCAGTAATA 60.462 42.308 0.00 0.00 0.00 0.98
3036 3080 8.409358 TCTCTAGCAGTAATACATCATGCTTA 57.591 34.615 9.60 0.55 44.47 3.09
3046 3090 2.411748 ACATCATGCTTAACGTGTCGTG 59.588 45.455 0.00 0.00 39.99 4.35
3158 3202 4.693566 CCTGGTTTAGAACATTGCGAAGTA 59.306 41.667 0.00 0.00 0.00 2.24
3206 3250 6.780706 TTCTTGGTCACTCTCGAATAAAAC 57.219 37.500 0.00 0.00 0.00 2.43
3209 3253 5.462530 TGGTCACTCTCGAATAAAACAGA 57.537 39.130 0.00 0.00 0.00 3.41
3338 3382 1.961277 GGTGAAGGTGCGTCCACAG 60.961 63.158 0.00 0.00 43.88 3.66
3520 3564 5.337554 AGGTACGAAAACTTTTCTGTTTGC 58.662 37.500 11.59 0.00 39.71 3.68
3550 3594 5.348997 GTGAATAGCTCCTTGTTGTGACTAC 59.651 44.000 0.00 0.00 0.00 2.73
3551 3595 2.440539 AGCTCCTTGTTGTGACTACG 57.559 50.000 0.00 0.00 0.00 3.51
3562 3622 1.082117 GTGACTACGGGCGACAATGG 61.082 60.000 0.00 0.00 0.00 3.16
3570 3631 0.458370 GGGCGACAATGGCATGTTTC 60.458 55.000 0.00 0.00 32.57 2.78
3571 3632 0.798009 GGCGACAATGGCATGTTTCG 60.798 55.000 16.90 16.90 32.57 3.46
3573 3634 1.665735 GCGACAATGGCATGTTTCGTT 60.666 47.619 20.21 0.00 32.57 3.85
3800 3893 7.860373 GTGTACTCAATTTTTATTGCACTGTCA 59.140 33.333 0.00 0.00 0.00 3.58
3805 3898 9.462174 CTCAATTTTTATTGCACTGTCAAACTA 57.538 29.630 0.00 0.00 0.00 2.24
3845 3938 6.590068 CAATTCACCTCTATCATCTCCAACT 58.410 40.000 0.00 0.00 0.00 3.16
3860 3953 0.313043 CAACTGCTTCACAAGGGCTG 59.687 55.000 0.00 0.00 0.00 4.85
4031 4124 2.672307 GGCACTTCTGCAGCTGCT 60.672 61.111 36.61 16.02 46.28 4.24
4132 4226 8.625651 TGCTAGAGTTCATAGAAGTTATGAGAC 58.374 37.037 0.00 1.29 35.62 3.36
4173 4271 4.592485 AGGATAGGAAGTTATGCGACTG 57.408 45.455 0.00 0.00 0.00 3.51
4301 4405 3.512724 GGCACTCTAACTGGGTACAAGTA 59.487 47.826 0.00 0.00 0.00 2.24
4364 4471 2.412870 CGACTGTTCATGCAGGTTACA 58.587 47.619 0.00 3.66 40.59 2.41
4365 4472 2.413112 CGACTGTTCATGCAGGTTACAG 59.587 50.000 24.21 24.21 40.59 2.74
4366 4473 2.154462 ACTGTTCATGCAGGTTACAGC 58.846 47.619 25.11 1.48 39.77 4.40
4367 4474 2.224621 ACTGTTCATGCAGGTTACAGCT 60.225 45.455 25.11 15.29 39.77 4.24
4368 4475 2.816087 CTGTTCATGCAGGTTACAGCTT 59.184 45.455 18.14 0.00 33.11 3.74
4369 4476 3.221771 TGTTCATGCAGGTTACAGCTTT 58.778 40.909 0.00 0.00 0.00 3.51
4370 4477 4.393834 TGTTCATGCAGGTTACAGCTTTA 58.606 39.130 0.00 0.00 0.00 1.85
4371 4478 4.215399 TGTTCATGCAGGTTACAGCTTTAC 59.785 41.667 0.00 0.00 0.00 2.01
4372 4479 4.286297 TCATGCAGGTTACAGCTTTACT 57.714 40.909 0.00 0.00 0.00 2.24
4373 4480 4.651778 TCATGCAGGTTACAGCTTTACTT 58.348 39.130 0.00 0.00 0.00 2.24
4374 4481 5.800296 TCATGCAGGTTACAGCTTTACTTA 58.200 37.500 0.00 0.00 0.00 2.24
4375 4482 6.234920 TCATGCAGGTTACAGCTTTACTTAA 58.765 36.000 0.00 0.00 0.00 1.85
4376 4483 6.884295 TCATGCAGGTTACAGCTTTACTTAAT 59.116 34.615 0.00 0.00 0.00 1.40
4377 4484 6.737254 TGCAGGTTACAGCTTTACTTAATC 57.263 37.500 0.00 0.00 0.00 1.75
4378 4485 6.234920 TGCAGGTTACAGCTTTACTTAATCA 58.765 36.000 0.00 0.00 0.00 2.57
4379 4486 6.371548 TGCAGGTTACAGCTTTACTTAATCAG 59.628 38.462 0.00 0.00 0.00 2.90
4380 4487 6.371825 GCAGGTTACAGCTTTACTTAATCAGT 59.628 38.462 0.00 0.00 39.87 3.41
4381 4488 7.094762 GCAGGTTACAGCTTTACTTAATCAGTT 60.095 37.037 0.00 0.00 36.88 3.16
4382 4489 8.443937 CAGGTTACAGCTTTACTTAATCAGTTC 58.556 37.037 0.00 0.00 36.88 3.01
4383 4490 8.376270 AGGTTACAGCTTTACTTAATCAGTTCT 58.624 33.333 0.00 0.00 36.88 3.01
4384 4491 9.000486 GGTTACAGCTTTACTTAATCAGTTCTT 58.000 33.333 0.00 0.00 36.88 2.52
4391 4498 9.840427 GCTTTACTTAATCAGTTCTTTTATGCA 57.160 29.630 0.00 0.00 36.88 3.96
4394 4501 9.515226 TTACTTAATCAGTTCTTTTATGCAGGT 57.485 29.630 0.00 0.00 36.88 4.00
4395 4502 8.409358 ACTTAATCAGTTCTTTTATGCAGGTT 57.591 30.769 0.00 0.00 27.32 3.50
4396 4503 9.515226 ACTTAATCAGTTCTTTTATGCAGGTTA 57.485 29.630 0.00 0.00 27.32 2.85
4397 4504 9.774742 CTTAATCAGTTCTTTTATGCAGGTTAC 57.225 33.333 0.00 0.00 0.00 2.50
4443 4550 6.856135 TTTGCTATCTGAGATATGTGCTTG 57.144 37.500 2.11 0.00 0.00 4.01
4474 4581 5.028549 GACATGTCCAGATATCCACTGTT 57.971 43.478 15.31 0.00 34.04 3.16
4475 4582 4.774124 ACATGTCCAGATATCCACTGTTG 58.226 43.478 0.00 0.00 34.04 3.33
4476 4583 3.912496 TGTCCAGATATCCACTGTTGG 57.088 47.619 0.00 0.00 45.56 3.77
4477 4584 3.181329 TGTCCAGATATCCACTGTTGGT 58.819 45.455 0.00 0.00 44.35 3.67
4478 4585 4.358214 TGTCCAGATATCCACTGTTGGTA 58.642 43.478 0.00 0.00 44.35 3.25
4521 4630 2.127271 TGTACCAACATCAGCATGGG 57.873 50.000 0.00 0.00 38.58 4.00
4551 4660 1.679153 GAAAAAGGTGAGGCGGACAAA 59.321 47.619 0.00 0.00 0.00 2.83
4557 4666 0.586802 GTGAGGCGGACAAAAGACAC 59.413 55.000 0.00 0.00 0.00 3.67
4576 4685 2.282958 ATGTGCTGCTGCTGGCTT 60.283 55.556 17.00 3.15 42.39 4.35
4579 4688 1.068585 GTGCTGCTGCTGGCTTTTT 59.931 52.632 17.00 0.00 42.39 1.94
4629 4738 6.604171 TGGATGTTATATGGTGATCAAAGCT 58.396 36.000 0.00 0.00 0.00 3.74
4635 4744 2.189594 TGGTGATCAAAGCTGACCTG 57.810 50.000 0.00 0.00 33.30 4.00
4642 4751 3.025322 TCAAAGCTGACCTGGGAAAAA 57.975 42.857 0.00 0.00 0.00 1.94
4680 4789 2.441750 TCACTTGGTTAGGGCAACTCTT 59.558 45.455 0.00 0.00 37.30 2.85
4681 4790 3.649023 TCACTTGGTTAGGGCAACTCTTA 59.351 43.478 0.00 0.00 37.30 2.10
4682 4791 4.003648 CACTTGGTTAGGGCAACTCTTAG 58.996 47.826 0.00 0.00 37.30 2.18
4683 4792 3.908103 ACTTGGTTAGGGCAACTCTTAGA 59.092 43.478 0.00 0.00 37.30 2.10
4684 4793 4.020128 ACTTGGTTAGGGCAACTCTTAGAG 60.020 45.833 7.82 7.82 37.30 2.43
4685 4794 2.236395 TGGTTAGGGCAACTCTTAGAGC 59.764 50.000 9.44 0.00 37.30 4.09
4686 4795 2.236395 GGTTAGGGCAACTCTTAGAGCA 59.764 50.000 9.44 0.00 37.30 4.26
4687 4796 3.307480 GGTTAGGGCAACTCTTAGAGCAA 60.307 47.826 9.44 0.00 37.30 3.91
4688 4797 2.481289 AGGGCAACTCTTAGAGCAAC 57.519 50.000 9.44 0.00 32.04 4.17
4689 4798 1.079503 GGGCAACTCTTAGAGCAACG 58.920 55.000 9.44 0.00 32.04 4.10
4690 4799 0.444260 GGCAACTCTTAGAGCAACGC 59.556 55.000 9.44 6.69 32.04 4.84
4691 4800 0.444260 GCAACTCTTAGAGCAACGCC 59.556 55.000 9.44 0.00 32.04 5.68
4692 4801 1.795768 CAACTCTTAGAGCAACGCCA 58.204 50.000 9.44 0.00 32.04 5.69
4693 4802 2.143122 CAACTCTTAGAGCAACGCCAA 58.857 47.619 9.44 0.00 32.04 4.52
4694 4803 1.797025 ACTCTTAGAGCAACGCCAAC 58.203 50.000 9.44 0.00 32.04 3.77
4695 4804 1.935300 ACTCTTAGAGCAACGCCAACG 60.935 52.381 9.44 0.00 38.12 4.10
4696 4805 0.669318 TCTTAGAGCAACGCCAACGG 60.669 55.000 0.00 0.00 46.04 4.44
4697 4806 1.635663 CTTAGAGCAACGCCAACGGG 61.636 60.000 0.00 0.00 46.04 5.28
4713 4822 2.843545 GGCTGACCCCCAAACAGA 59.156 61.111 0.00 0.00 34.07 3.41
4714 4823 1.603739 GGCTGACCCCCAAACAGAC 60.604 63.158 0.00 0.00 34.07 3.51
4715 4824 1.966451 GCTGACCCCCAAACAGACG 60.966 63.158 0.00 0.00 34.07 4.18
4716 4825 1.752198 CTGACCCCCAAACAGACGA 59.248 57.895 0.00 0.00 34.07 4.20
4717 4826 0.324943 CTGACCCCCAAACAGACGAT 59.675 55.000 0.00 0.00 34.07 3.73
4718 4827 0.036164 TGACCCCCAAACAGACGATG 59.964 55.000 0.00 0.00 0.00 3.84
4719 4828 0.323629 GACCCCCAAACAGACGATGA 59.676 55.000 0.00 0.00 0.00 2.92
4720 4829 0.991920 ACCCCCAAACAGACGATGAT 59.008 50.000 0.00 0.00 0.00 2.45
4721 4830 1.354368 ACCCCCAAACAGACGATGATT 59.646 47.619 0.00 0.00 0.00 2.57
4722 4831 2.225017 ACCCCCAAACAGACGATGATTT 60.225 45.455 0.00 0.00 0.00 2.17
4723 4832 2.825532 CCCCCAAACAGACGATGATTTT 59.174 45.455 0.00 0.00 0.00 1.82
4724 4833 3.367292 CCCCCAAACAGACGATGATTTTG 60.367 47.826 0.00 0.00 0.00 2.44
4725 4834 3.255642 CCCCAAACAGACGATGATTTTGT 59.744 43.478 0.00 0.00 0.00 2.83
4726 4835 4.475944 CCCAAACAGACGATGATTTTGTC 58.524 43.478 0.00 0.00 38.83 3.18
4727 4836 4.475944 CCAAACAGACGATGATTTTGTCC 58.524 43.478 0.00 0.00 39.29 4.02
4728 4837 4.151070 CAAACAGACGATGATTTTGTCCG 58.849 43.478 0.00 0.00 39.29 4.79
4729 4838 3.040147 ACAGACGATGATTTTGTCCGT 57.960 42.857 0.00 0.00 39.29 4.69
4730 4839 3.399330 ACAGACGATGATTTTGTCCGTT 58.601 40.909 0.00 0.00 39.29 4.44
4731 4840 3.813166 ACAGACGATGATTTTGTCCGTTT 59.187 39.130 0.00 0.00 39.29 3.60
4732 4841 4.274950 ACAGACGATGATTTTGTCCGTTTT 59.725 37.500 0.00 0.00 39.29 2.43
4733 4842 5.212194 CAGACGATGATTTTGTCCGTTTTT 58.788 37.500 0.00 0.00 39.29 1.94
4750 4859 0.741915 TTTTGTCTGTTTGGGTCGGC 59.258 50.000 0.00 0.00 0.00 5.54
4751 4860 1.104577 TTTGTCTGTTTGGGTCGGCC 61.105 55.000 0.00 0.00 0.00 6.13
4752 4861 3.047877 GTCTGTTTGGGTCGGCCG 61.048 66.667 22.12 22.12 34.97 6.13
4776 4885 4.449391 CGGTGTCCGTCCAGTTTT 57.551 55.556 0.00 0.00 42.73 2.43
4777 4886 2.231820 CGGTGTCCGTCCAGTTTTC 58.768 57.895 0.00 0.00 42.73 2.29
4778 4887 0.249741 CGGTGTCCGTCCAGTTTTCT 60.250 55.000 0.00 0.00 42.73 2.52
4779 4888 1.808891 CGGTGTCCGTCCAGTTTTCTT 60.809 52.381 0.00 0.00 42.73 2.52
4780 4889 2.294979 GGTGTCCGTCCAGTTTTCTTT 58.705 47.619 0.00 0.00 0.00 2.52
4781 4890 2.686405 GGTGTCCGTCCAGTTTTCTTTT 59.314 45.455 0.00 0.00 0.00 2.27
4782 4891 3.129813 GGTGTCCGTCCAGTTTTCTTTTT 59.870 43.478 0.00 0.00 0.00 1.94
4783 4892 4.102649 GTGTCCGTCCAGTTTTCTTTTTG 58.897 43.478 0.00 0.00 0.00 2.44
4784 4893 4.011023 TGTCCGTCCAGTTTTCTTTTTGA 58.989 39.130 0.00 0.00 0.00 2.69
4785 4894 4.095782 TGTCCGTCCAGTTTTCTTTTTGAG 59.904 41.667 0.00 0.00 0.00 3.02
4786 4895 4.095932 GTCCGTCCAGTTTTCTTTTTGAGT 59.904 41.667 0.00 0.00 0.00 3.41
4787 4896 4.334481 TCCGTCCAGTTTTCTTTTTGAGTC 59.666 41.667 0.00 0.00 0.00 3.36
4788 4897 4.095782 CCGTCCAGTTTTCTTTTTGAGTCA 59.904 41.667 0.00 0.00 0.00 3.41
4789 4898 5.028375 CGTCCAGTTTTCTTTTTGAGTCAC 58.972 41.667 0.00 0.00 0.00 3.67
4790 4899 5.340803 GTCCAGTTTTCTTTTTGAGTCACC 58.659 41.667 0.00 0.00 0.00 4.02
4791 4900 5.125578 GTCCAGTTTTCTTTTTGAGTCACCT 59.874 40.000 0.00 0.00 0.00 4.00
4792 4901 5.125417 TCCAGTTTTCTTTTTGAGTCACCTG 59.875 40.000 0.00 0.00 0.00 4.00
4793 4902 5.105756 CCAGTTTTCTTTTTGAGTCACCTGT 60.106 40.000 0.00 0.00 0.00 4.00
4794 4903 5.801947 CAGTTTTCTTTTTGAGTCACCTGTG 59.198 40.000 0.00 0.00 0.00 3.66
4795 4904 4.370364 TTTCTTTTTGAGTCACCTGTGC 57.630 40.909 0.00 0.00 0.00 4.57
4796 4905 1.939934 TCTTTTTGAGTCACCTGTGCG 59.060 47.619 0.00 0.00 0.00 5.34
4797 4906 0.380378 TTTTTGAGTCACCTGTGCGC 59.620 50.000 0.00 0.00 0.00 6.09
4798 4907 1.444119 TTTTGAGTCACCTGTGCGCC 61.444 55.000 4.18 0.00 0.00 6.53
4799 4908 3.825160 TTGAGTCACCTGTGCGCCC 62.825 63.158 4.18 0.00 0.00 6.13
4800 4909 4.314440 GAGTCACCTGTGCGCCCA 62.314 66.667 4.18 0.00 0.00 5.36
4801 4910 3.825160 GAGTCACCTGTGCGCCCAA 62.825 63.158 4.18 0.00 0.00 4.12
4802 4911 2.672996 GTCACCTGTGCGCCCAAT 60.673 61.111 4.18 0.00 0.00 3.16
4803 4912 2.672651 TCACCTGTGCGCCCAATG 60.673 61.111 4.18 0.53 0.00 2.82
4804 4913 4.424566 CACCTGTGCGCCCAATGC 62.425 66.667 4.18 0.00 0.00 3.56
4805 4914 4.972733 ACCTGTGCGCCCAATGCA 62.973 61.111 4.18 0.00 41.33 3.96
4806 4915 3.682885 CCTGTGCGCCCAATGCAA 61.683 61.111 4.18 0.00 45.23 4.08
4807 4916 2.126228 CTGTGCGCCCAATGCAAG 60.126 61.111 4.18 0.00 45.23 4.01
4808 4917 4.360964 TGTGCGCCCAATGCAAGC 62.361 61.111 4.18 0.00 45.23 4.01
4809 4918 4.060038 GTGCGCCCAATGCAAGCT 62.060 61.111 4.18 0.00 45.23 3.74
4810 4919 2.360978 TGCGCCCAATGCAAGCTA 60.361 55.556 4.18 0.00 39.87 3.32
4811 4920 2.102946 GCGCCCAATGCAAGCTAC 59.897 61.111 0.00 0.00 41.33 3.58
4812 4921 2.800736 CGCCCAATGCAAGCTACC 59.199 61.111 0.00 0.00 41.33 3.18
4813 4922 2.774799 CGCCCAATGCAAGCTACCC 61.775 63.158 0.00 0.00 41.33 3.69
4814 4923 1.682005 GCCCAATGCAAGCTACCCA 60.682 57.895 0.00 0.00 40.77 4.51
4815 4924 1.044790 GCCCAATGCAAGCTACCCAT 61.045 55.000 0.00 0.00 40.77 4.00
4816 4925 1.488390 CCCAATGCAAGCTACCCATT 58.512 50.000 0.00 0.00 0.00 3.16
4817 4926 1.832998 CCCAATGCAAGCTACCCATTT 59.167 47.619 0.00 0.00 0.00 2.32
4818 4927 2.236893 CCCAATGCAAGCTACCCATTTT 59.763 45.455 0.00 0.00 0.00 1.82
4819 4928 3.524541 CCAATGCAAGCTACCCATTTTC 58.475 45.455 0.00 0.00 0.00 2.29
4820 4929 3.055963 CCAATGCAAGCTACCCATTTTCA 60.056 43.478 0.00 0.00 0.00 2.69
4821 4930 4.383335 CCAATGCAAGCTACCCATTTTCAT 60.383 41.667 0.00 0.00 0.00 2.57
4822 4931 5.163426 CCAATGCAAGCTACCCATTTTCATA 60.163 40.000 0.00 0.00 0.00 2.15
4823 4932 6.463331 CCAATGCAAGCTACCCATTTTCATAT 60.463 38.462 0.00 0.00 0.00 1.78
4824 4933 5.772825 TGCAAGCTACCCATTTTCATATC 57.227 39.130 0.00 0.00 0.00 1.63
4825 4934 4.584325 TGCAAGCTACCCATTTTCATATCC 59.416 41.667 0.00 0.00 0.00 2.59
4826 4935 4.584325 GCAAGCTACCCATTTTCATATCCA 59.416 41.667 0.00 0.00 0.00 3.41
4827 4936 5.507985 GCAAGCTACCCATTTTCATATCCAC 60.508 44.000 0.00 0.00 0.00 4.02
4828 4937 4.729868 AGCTACCCATTTTCATATCCACC 58.270 43.478 0.00 0.00 0.00 4.61
4829 4938 4.416848 AGCTACCCATTTTCATATCCACCT 59.583 41.667 0.00 0.00 0.00 4.00
4830 4939 4.520492 GCTACCCATTTTCATATCCACCTG 59.480 45.833 0.00 0.00 0.00 4.00
4831 4940 3.299503 ACCCATTTTCATATCCACCTGC 58.700 45.455 0.00 0.00 0.00 4.85
4832 4941 3.298619 CCCATTTTCATATCCACCTGCA 58.701 45.455 0.00 0.00 0.00 4.41
4833 4942 3.705579 CCCATTTTCATATCCACCTGCAA 59.294 43.478 0.00 0.00 0.00 4.08
4834 4943 4.161942 CCCATTTTCATATCCACCTGCAAA 59.838 41.667 0.00 0.00 0.00 3.68
4835 4944 5.163280 CCCATTTTCATATCCACCTGCAAAT 60.163 40.000 0.00 0.00 0.00 2.32
4836 4945 6.350906 CCATTTTCATATCCACCTGCAAATT 58.649 36.000 0.00 0.00 0.00 1.82
4837 4946 6.824704 CCATTTTCATATCCACCTGCAAATTT 59.175 34.615 0.00 0.00 0.00 1.82
4838 4947 7.986320 CCATTTTCATATCCACCTGCAAATTTA 59.014 33.333 0.00 0.00 0.00 1.40
4839 4948 9.381033 CATTTTCATATCCACCTGCAAATTTAA 57.619 29.630 0.00 0.00 0.00 1.52
4840 4949 9.956640 ATTTTCATATCCACCTGCAAATTTAAA 57.043 25.926 0.00 0.00 0.00 1.52
4841 4950 9.784531 TTTTCATATCCACCTGCAAATTTAAAA 57.215 25.926 0.00 0.00 0.00 1.52
4842 4951 9.434420 TTTCATATCCACCTGCAAATTTAAAAG 57.566 29.630 0.00 0.00 0.00 2.27
4843 4952 7.555087 TCATATCCACCTGCAAATTTAAAAGG 58.445 34.615 10.11 10.11 0.00 3.11
4844 4953 4.001618 TCCACCTGCAAATTTAAAAGGC 57.998 40.909 11.16 3.16 0.00 4.35
4845 4954 3.073678 CCACCTGCAAATTTAAAAGGCC 58.926 45.455 0.00 0.00 0.00 5.19
4846 4955 3.073678 CACCTGCAAATTTAAAAGGCCC 58.926 45.455 0.00 0.00 0.00 5.80
4847 4956 2.708325 ACCTGCAAATTTAAAAGGCCCA 59.292 40.909 0.00 0.00 0.00 5.36
4848 4957 3.073678 CCTGCAAATTTAAAAGGCCCAC 58.926 45.455 0.00 0.00 0.00 4.61
4849 4958 2.736192 CTGCAAATTTAAAAGGCCCACG 59.264 45.455 0.00 0.00 0.00 4.94
4850 4959 2.073056 GCAAATTTAAAAGGCCCACGG 58.927 47.619 0.00 0.00 0.00 4.94
4860 4969 2.828868 GCCCACGGCCATAGATCA 59.171 61.111 2.24 0.00 44.06 2.92
4861 4970 1.376466 GCCCACGGCCATAGATCAT 59.624 57.895 2.24 0.00 44.06 2.45
4862 4971 0.250901 GCCCACGGCCATAGATCATT 60.251 55.000 2.24 0.00 44.06 2.57
4863 4972 1.527034 CCCACGGCCATAGATCATTG 58.473 55.000 2.24 0.00 0.00 2.82
4864 4973 0.877071 CCACGGCCATAGATCATTGC 59.123 55.000 2.24 0.00 0.00 3.56
4865 4974 0.877071 CACGGCCATAGATCATTGCC 59.123 55.000 2.24 3.10 41.19 4.52
4866 4975 0.473755 ACGGCCATAGATCATTGCCA 59.526 50.000 2.24 0.00 44.15 4.92
4867 4976 1.162698 CGGCCATAGATCATTGCCAG 58.837 55.000 2.24 8.27 44.15 4.85
4868 4977 0.886563 GGCCATAGATCATTGCCAGC 59.113 55.000 0.00 2.43 43.54 4.85
4869 4978 1.612676 GCCATAGATCATTGCCAGCA 58.387 50.000 0.00 0.00 0.00 4.41
4870 4979 1.958579 GCCATAGATCATTGCCAGCAA 59.041 47.619 7.64 7.64 40.47 3.91
4871 4980 2.561419 GCCATAGATCATTGCCAGCAAT 59.439 45.455 12.02 12.02 46.35 3.56
4872 4981 3.367087 GCCATAGATCATTGCCAGCAATC 60.367 47.826 14.77 5.69 43.92 2.67
4873 4982 3.824443 CCATAGATCATTGCCAGCAATCA 59.176 43.478 14.77 2.78 43.92 2.57
4874 4983 4.462834 CCATAGATCATTGCCAGCAATCAT 59.537 41.667 14.77 8.21 43.92 2.45
4875 4984 5.402398 CATAGATCATTGCCAGCAATCATG 58.598 41.667 14.77 6.51 43.92 3.07
4893 5002 3.061848 CCGCCGCCCAAAGTTCAT 61.062 61.111 0.00 0.00 0.00 2.57
4894 5003 2.179018 CGCCGCCCAAAGTTCATG 59.821 61.111 0.00 0.00 0.00 3.07
4895 5004 2.125952 GCCGCCCAAAGTTCATGC 60.126 61.111 0.00 0.00 0.00 4.06
4896 5005 2.573340 CCGCCCAAAGTTCATGCC 59.427 61.111 0.00 0.00 0.00 4.40
4897 5006 2.179018 CGCCCAAAGTTCATGCCG 59.821 61.111 0.00 0.00 0.00 5.69
4898 5007 2.573340 GCCCAAAGTTCATGCCGG 59.427 61.111 0.00 0.00 0.00 6.13
4899 5008 2.573340 CCCAAAGTTCATGCCGGC 59.427 61.111 22.73 22.73 0.00 6.13
4900 5009 2.274645 CCCAAAGTTCATGCCGGCA 61.275 57.895 34.80 34.80 0.00 5.69
4901 5010 1.080569 CCAAAGTTCATGCCGGCAC 60.081 57.895 35.50 19.95 0.00 5.01
4902 5011 1.080569 CAAAGTTCATGCCGGCACC 60.081 57.895 35.50 19.83 0.00 5.01
4903 5012 1.530419 AAAGTTCATGCCGGCACCA 60.530 52.632 35.50 19.29 0.00 4.17
4904 5013 0.899717 AAAGTTCATGCCGGCACCAT 60.900 50.000 35.50 14.65 0.00 3.55
4905 5014 1.597797 AAGTTCATGCCGGCACCATG 61.598 55.000 35.50 26.75 41.03 3.66
4906 5015 3.451004 TTCATGCCGGCACCATGC 61.451 61.111 35.50 0.00 44.08 4.06
4907 5016 3.942377 TTCATGCCGGCACCATGCT 62.942 57.895 35.50 12.76 44.28 3.79
4908 5017 2.516695 CATGCCGGCACCATGCTA 60.517 61.111 35.50 6.20 44.28 3.49
4909 5018 2.203252 ATGCCGGCACCATGCTAG 60.203 61.111 35.50 0.00 44.28 3.42
4939 5048 5.534207 CATATAATGCCAGCCTCCAAAAA 57.466 39.130 0.00 0.00 0.00 1.94
4940 5049 5.535333 CATATAATGCCAGCCTCCAAAAAG 58.465 41.667 0.00 0.00 0.00 2.27
4941 5050 2.014010 AATGCCAGCCTCCAAAAAGA 57.986 45.000 0.00 0.00 0.00 2.52
4942 5051 1.260544 ATGCCAGCCTCCAAAAAGAC 58.739 50.000 0.00 0.00 0.00 3.01
4943 5052 0.827507 TGCCAGCCTCCAAAAAGACC 60.828 55.000 0.00 0.00 0.00 3.85
4944 5053 0.827507 GCCAGCCTCCAAAAAGACCA 60.828 55.000 0.00 0.00 0.00 4.02
4945 5054 1.928868 CCAGCCTCCAAAAAGACCAT 58.071 50.000 0.00 0.00 0.00 3.55
4946 5055 1.821136 CCAGCCTCCAAAAAGACCATC 59.179 52.381 0.00 0.00 0.00 3.51
4947 5056 2.517959 CAGCCTCCAAAAAGACCATCA 58.482 47.619 0.00 0.00 0.00 3.07
4948 5057 2.229784 CAGCCTCCAAAAAGACCATCAC 59.770 50.000 0.00 0.00 0.00 3.06
4949 5058 2.158475 AGCCTCCAAAAAGACCATCACA 60.158 45.455 0.00 0.00 0.00 3.58
4950 5059 2.827921 GCCTCCAAAAAGACCATCACAT 59.172 45.455 0.00 0.00 0.00 3.21
4951 5060 4.016444 GCCTCCAAAAAGACCATCACATA 58.984 43.478 0.00 0.00 0.00 2.29
4952 5061 4.096984 GCCTCCAAAAAGACCATCACATAG 59.903 45.833 0.00 0.00 0.00 2.23
4953 5062 5.256474 CCTCCAAAAAGACCATCACATAGT 58.744 41.667 0.00 0.00 0.00 2.12
4954 5063 5.355350 CCTCCAAAAAGACCATCACATAGTC 59.645 44.000 0.00 0.00 0.00 2.59
4955 5064 6.126863 TCCAAAAAGACCATCACATAGTCT 57.873 37.500 0.00 0.00 42.58 3.24
4964 5073 4.808077 CATCACATAGTCTTGATGGCAC 57.192 45.455 5.43 0.00 43.65 5.01
4965 5074 2.892374 TCACATAGTCTTGATGGCACG 58.108 47.619 0.00 0.00 0.00 5.34
4966 5075 1.328680 CACATAGTCTTGATGGCACGC 59.671 52.381 0.00 0.00 0.00 5.34
4967 5076 1.208052 ACATAGTCTTGATGGCACGCT 59.792 47.619 0.00 0.00 0.00 5.07
4968 5077 2.283298 CATAGTCTTGATGGCACGCTT 58.717 47.619 0.00 0.00 0.00 4.68
4969 5078 1.725641 TAGTCTTGATGGCACGCTTG 58.274 50.000 0.00 0.00 0.00 4.01
4988 5097 4.201679 CAGTGGCCGGCATGCATG 62.202 66.667 30.85 22.70 0.00 4.06
5000 5109 3.534941 TGCATGCCAGCACACAAA 58.465 50.000 16.68 0.00 40.11 2.83
5001 5110 1.821258 TGCATGCCAGCACACAAAA 59.179 47.368 16.68 0.00 40.11 2.44
5002 5111 0.177373 TGCATGCCAGCACACAAAAA 59.823 45.000 16.68 0.00 40.11 1.94
5019 5128 1.977056 AAAAGGTTGGGAGTTCGACC 58.023 50.000 0.00 0.00 40.67 4.79
5020 5129 0.841289 AAAGGTTGGGAGTTCGACCA 59.159 50.000 4.33 0.00 42.37 4.02
5021 5130 0.108019 AAGGTTGGGAGTTCGACCAC 59.892 55.000 4.33 0.00 42.37 4.16
5022 5131 1.666872 GGTTGGGAGTTCGACCACG 60.667 63.158 0.00 0.00 40.21 4.94
5023 5132 2.029964 TTGGGAGTTCGACCACGC 59.970 61.111 0.00 0.00 36.27 5.34
5024 5133 3.524648 TTGGGAGTTCGACCACGCC 62.525 63.158 1.70 1.70 36.27 5.68
5025 5134 3.998672 GGGAGTTCGACCACGCCA 61.999 66.667 11.46 0.00 38.33 5.69
5026 5135 2.264794 GGAGTTCGACCACGCCAT 59.735 61.111 5.27 0.00 36.66 4.40
5027 5136 1.810030 GGAGTTCGACCACGCCATC 60.810 63.158 5.27 0.00 36.66 3.51
5028 5137 1.215647 GAGTTCGACCACGCCATCT 59.784 57.895 0.00 0.00 39.58 2.90
5029 5138 0.802607 GAGTTCGACCACGCCATCTC 60.803 60.000 0.00 0.00 39.58 2.75
5030 5139 2.158959 GTTCGACCACGCCATCTCG 61.159 63.158 0.00 0.00 39.58 4.04
5031 5140 3.350909 TTCGACCACGCCATCTCGG 62.351 63.158 0.00 0.00 39.58 4.63
5040 5149 3.770040 CCATCTCGGCCGTGGTCA 61.770 66.667 27.15 7.35 0.00 4.02
5041 5150 2.501128 CATCTCGGCCGTGGTCAT 59.499 61.111 27.15 9.62 0.00 3.06
5042 5151 1.884464 CATCTCGGCCGTGGTCATG 60.884 63.158 27.15 17.83 0.00 3.07
5043 5152 2.359169 ATCTCGGCCGTGGTCATGT 61.359 57.895 27.15 2.92 0.00 3.21
5044 5153 1.899437 ATCTCGGCCGTGGTCATGTT 61.899 55.000 27.15 0.00 0.00 2.71
5045 5154 1.216977 CTCGGCCGTGGTCATGTTA 59.783 57.895 27.15 0.00 0.00 2.41
5046 5155 0.806102 CTCGGCCGTGGTCATGTTAG 60.806 60.000 27.15 6.93 0.00 2.34
5047 5156 2.461110 CGGCCGTGGTCATGTTAGC 61.461 63.158 19.50 0.00 0.00 3.09
5048 5157 1.376683 GGCCGTGGTCATGTTAGCA 60.377 57.895 0.00 0.00 0.00 3.49
5049 5158 1.644786 GGCCGTGGTCATGTTAGCAC 61.645 60.000 6.65 6.65 42.93 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
458 482 0.249955 TTGGTATTCCCGAACCGTCC 59.750 55.000 0.00 0.00 38.70 4.79
460 484 2.635714 GATTTGGTATTCCCGAACCGT 58.364 47.619 0.00 0.00 39.53 4.83
920 955 9.372369 AGAGTGACTTGTAGATACTTAAAATGC 57.628 33.333 0.00 0.00 0.00 3.56
979 1014 6.826741 TCCATCTTTACACCCTTATAACTTGC 59.173 38.462 0.00 0.00 0.00 4.01
986 1021 7.133483 AGAGTAGTCCATCTTTACACCCTTAT 58.867 38.462 0.00 0.00 0.00 1.73
1036 1071 1.745115 CGGAAGCGGAATTGCCAGA 60.745 57.895 0.00 0.00 35.94 3.86
1058 1093 5.648092 ACTGAACCATCAACAAAGCTATACC 59.352 40.000 0.00 0.00 34.49 2.73
1059 1094 6.403636 CCACTGAACCATCAACAAAGCTATAC 60.404 42.308 0.00 0.00 34.49 1.47
1185 1220 1.525941 GCAAGCACCCATTTGCAATT 58.474 45.000 0.00 0.00 46.72 2.32
1186 1221 3.236604 GCAAGCACCCATTTGCAAT 57.763 47.368 0.00 0.00 46.72 3.56
1370 1405 1.153168 CCAGGGGTATCCAACTGCG 60.153 63.158 0.00 0.00 38.24 5.18
1576 1611 8.729756 TGAATGACTTGTATTGTTGAACATAGG 58.270 33.333 0.00 0.00 0.00 2.57
1608 1643 4.702131 GCCTCATCAAATACTGACAGGTTT 59.298 41.667 7.51 4.95 38.79 3.27
1755 1790 4.193826 TGAGATGCTACCACTGAGAAAC 57.806 45.455 0.00 0.00 0.00 2.78
1787 1822 1.468506 TAGTTGTGACTGCTCGGCCA 61.469 55.000 2.24 0.00 36.60 5.36
1833 1868 6.015772 GGCAGAGTACCAAAATTAAAACCTGA 60.016 38.462 0.00 0.00 0.00 3.86
1850 1885 3.762407 TTGCTGTTTAGTGGCAGAGTA 57.238 42.857 0.00 0.00 37.28 2.59
1919 1954 5.856126 TTGCTCCTGTAATACGAACAAAG 57.144 39.130 0.00 0.00 0.00 2.77
1932 1967 1.200716 CACATCGCATTTTGCTCCTGT 59.799 47.619 0.00 0.00 42.25 4.00
2130 2165 6.687081 TTTATTGTTATGGATCGTTGACCC 57.313 37.500 0.00 0.00 0.00 4.46
2132 2167 8.447833 TCACTTTTATTGTTATGGATCGTTGAC 58.552 33.333 0.00 0.00 0.00 3.18
2229 2264 2.047274 TGCTCGTGGCTTAGCACC 60.047 61.111 6.53 0.00 43.56 5.01
2291 2326 2.161609 CCAAACAAGATAACTCACCCGC 59.838 50.000 0.00 0.00 0.00 6.13
2336 2373 4.036971 TCAACCAACCCAAGTTATGAAACG 59.963 41.667 0.00 0.00 40.73 3.60
2365 2402 2.472695 TAGGGCATGAACACACAGAC 57.527 50.000 0.00 0.00 0.00 3.51
2369 2406 7.928307 AATATATGATAGGGCATGAACACAC 57.072 36.000 0.00 0.00 0.00 3.82
2402 2439 5.063438 CGAAGCTGCAGTATTAAGCAAGTTA 59.937 40.000 16.64 0.00 40.73 2.24
2543 2581 6.663093 TGTACTGCATGTTGAATAGGGAAAAT 59.337 34.615 0.00 0.00 0.00 1.82
2612 2651 8.219868 ACCATATGTCATCCACTTATGATTTCA 58.780 33.333 1.24 0.00 42.16 2.69
2684 2723 5.954335 CAGTTCTTACTGGGCCAATTTTAG 58.046 41.667 8.04 0.00 46.52 1.85
2699 2738 4.523083 ACAACCACTTGCTTCAGTTCTTA 58.477 39.130 0.00 0.00 0.00 2.10
2702 2741 2.945668 AGACAACCACTTGCTTCAGTTC 59.054 45.455 0.00 0.00 0.00 3.01
2716 2755 6.877611 TCAAGTCTTAAAATCCAGACAACC 57.122 37.500 2.36 0.00 41.77 3.77
2722 2761 7.202526 TGCACTTTTCAAGTCTTAAAATCCAG 58.797 34.615 0.00 0.00 40.46 3.86
2772 2811 3.001514 GGTAGGCTACCCCAACTGA 57.998 57.895 29.75 0.00 43.18 3.41
2848 2891 4.469586 TGAACCTATGACTTGTGATGGCTA 59.530 41.667 0.00 0.00 0.00 3.93
2908 2951 2.428890 CCAAAGTGTGGCTACAAACCAA 59.571 45.455 3.74 0.00 41.72 3.67
2927 2970 5.483685 ACTTGTCAAACTCTAGTATGCCA 57.516 39.130 0.00 0.00 0.00 4.92
2932 2975 7.762588 AGCTCTAACTTGTCAAACTCTAGTA 57.237 36.000 0.00 0.00 0.00 1.82
3020 3063 6.020121 ACGACACGTTAAGCATGATGTATTAC 60.020 38.462 0.00 0.00 36.35 1.89
3025 3068 2.411748 CACGACACGTTAAGCATGATGT 59.588 45.455 0.00 0.00 38.32 3.06
3036 3080 3.150410 CTTGTGCGCACGACACGTT 62.150 57.895 33.22 0.00 41.03 3.99
3046 3090 0.384601 GCAAATTTTGGCTTGTGCGC 60.385 50.000 10.96 0.00 40.82 6.09
3057 3101 3.243002 CCGCCACAACAAATGCAAATTTT 60.243 39.130 0.00 0.00 0.00 1.82
3185 3229 5.926542 TCTGTTTTATTCGAGAGTGACCAAG 59.073 40.000 0.00 0.00 0.00 3.61
3338 3382 7.064728 GGGAAAGTTACTACTCATGAACATGTC 59.935 40.741 13.35 0.00 39.72 3.06
3456 3500 4.426313 GGAAGAACTGCCCCGGGG 62.426 72.222 37.09 37.09 38.57 5.73
3520 3564 7.119699 TCACAACAAGGAGCTATTCACTTTATG 59.880 37.037 0.00 0.00 0.00 1.90
3550 3594 2.211619 AAACATGCCATTGTCGCCCG 62.212 55.000 0.00 0.00 0.00 6.13
3551 3595 0.458370 GAAACATGCCATTGTCGCCC 60.458 55.000 0.00 0.00 0.00 6.13
3562 3622 1.923204 TGCAACAACAACGAAACATGC 59.077 42.857 0.00 0.00 0.00 4.06
3570 3631 4.597079 ACAGTAGAAATGCAACAACAACG 58.403 39.130 0.00 0.00 0.00 4.10
3571 3632 5.231991 CCAACAGTAGAAATGCAACAACAAC 59.768 40.000 0.00 0.00 0.00 3.32
3573 3634 4.400884 ACCAACAGTAGAAATGCAACAACA 59.599 37.500 0.00 0.00 0.00 3.33
3627 3688 7.854166 AGCTCTAAGACTCCTGAATAATGAT 57.146 36.000 0.00 0.00 0.00 2.45
3702 3763 6.508777 GGTTACACTGAACCAAATTAAAGCA 58.491 36.000 0.41 0.00 46.97 3.91
3800 3893 1.485066 CTACGGCCCTGTGGATAGTTT 59.515 52.381 0.00 0.00 0.00 2.66
3805 3898 1.635817 ATTGCTACGGCCCTGTGGAT 61.636 55.000 0.00 0.00 37.74 3.41
3845 3938 1.900016 CAGCAGCCCTTGTGAAGCA 60.900 57.895 0.00 0.00 0.00 3.91
4031 4124 4.352595 TGTTTTCACCTTTCAGGAGGGATA 59.647 41.667 0.00 0.00 41.31 2.59
4132 4226 3.375299 CCTTCAGCCTCGGATTTTAGTTG 59.625 47.826 0.00 0.00 0.00 3.16
4283 4386 5.452077 GCCAGATACTTGTACCCAGTTAGAG 60.452 48.000 0.42 0.00 0.00 2.43
4301 4405 1.072266 TACAACCCAAGGTGCCAGAT 58.928 50.000 0.00 0.00 35.34 2.90
4365 4472 9.840427 TGCATAAAAGAACTGATTAAGTAAAGC 57.160 29.630 0.00 0.00 38.56 3.51
4368 4475 9.515226 ACCTGCATAAAAGAACTGATTAAGTAA 57.485 29.630 0.00 0.00 38.56 2.24
4369 4476 9.515226 AACCTGCATAAAAGAACTGATTAAGTA 57.485 29.630 0.00 0.00 38.56 2.24
4370 4477 8.409358 AACCTGCATAAAAGAACTGATTAAGT 57.591 30.769 0.00 0.00 42.60 2.24
4371 4478 9.774742 GTAACCTGCATAAAAGAACTGATTAAG 57.225 33.333 0.00 0.00 0.00 1.85
4372 4479 9.290988 TGTAACCTGCATAAAAGAACTGATTAA 57.709 29.630 0.00 0.00 0.00 1.40
4373 4480 8.856153 TGTAACCTGCATAAAAGAACTGATTA 57.144 30.769 0.00 0.00 0.00 1.75
4374 4481 7.575720 GCTGTAACCTGCATAAAAGAACTGATT 60.576 37.037 0.00 0.00 35.75 2.57
4375 4482 6.127897 GCTGTAACCTGCATAAAAGAACTGAT 60.128 38.462 0.00 0.00 35.75 2.90
4376 4483 5.181245 GCTGTAACCTGCATAAAAGAACTGA 59.819 40.000 0.00 0.00 35.75 3.41
4377 4484 5.182001 AGCTGTAACCTGCATAAAAGAACTG 59.818 40.000 0.00 0.00 37.95 3.16
4378 4485 5.316987 AGCTGTAACCTGCATAAAAGAACT 58.683 37.500 0.00 0.00 37.95 3.01
4379 4486 5.629079 AGCTGTAACCTGCATAAAAGAAC 57.371 39.130 0.00 0.00 37.95 3.01
4380 4487 6.648879 AAAGCTGTAACCTGCATAAAAGAA 57.351 33.333 0.00 0.00 37.95 2.52
4381 4488 6.940298 AGTAAAGCTGTAACCTGCATAAAAGA 59.060 34.615 0.00 0.00 37.95 2.52
4382 4489 7.145932 AGTAAAGCTGTAACCTGCATAAAAG 57.854 36.000 0.00 0.00 37.95 2.27
4383 4490 7.519032 AAGTAAAGCTGTAACCTGCATAAAA 57.481 32.000 0.00 0.00 37.95 1.52
4384 4491 8.624367 TTAAGTAAAGCTGTAACCTGCATAAA 57.376 30.769 0.00 0.00 37.95 1.40
4385 4492 8.801882 ATTAAGTAAAGCTGTAACCTGCATAA 57.198 30.769 0.00 0.00 37.95 1.90
4386 4493 8.044309 TGATTAAGTAAAGCTGTAACCTGCATA 58.956 33.333 0.00 0.00 37.95 3.14
4387 4494 6.884295 TGATTAAGTAAAGCTGTAACCTGCAT 59.116 34.615 0.00 0.00 37.95 3.96
4388 4495 6.234920 TGATTAAGTAAAGCTGTAACCTGCA 58.765 36.000 0.00 0.00 37.95 4.41
4389 4496 6.371825 ACTGATTAAGTAAAGCTGTAACCTGC 59.628 38.462 0.00 0.00 37.36 4.85
4390 4497 7.907214 ACTGATTAAGTAAAGCTGTAACCTG 57.093 36.000 0.00 0.00 37.36 4.00
4391 4498 8.376270 AGAACTGATTAAGTAAAGCTGTAACCT 58.624 33.333 0.00 0.00 38.56 3.50
4392 4499 8.549338 AGAACTGATTAAGTAAAGCTGTAACC 57.451 34.615 0.00 0.00 38.56 2.85
4471 4578 0.692476 ACCTGCATCAGCTACCAACA 59.308 50.000 0.00 0.00 42.74 3.33
4472 4579 1.089920 CACCTGCATCAGCTACCAAC 58.910 55.000 0.00 0.00 42.74 3.77
4474 4581 1.078214 GCACCTGCATCAGCTACCA 60.078 57.895 0.00 0.00 42.74 3.25
4475 4582 1.094073 CAGCACCTGCATCAGCTACC 61.094 60.000 6.60 0.00 45.16 3.18
4476 4583 1.094073 CCAGCACCTGCATCAGCTAC 61.094 60.000 6.60 0.00 45.16 3.58
4477 4584 1.222661 CCAGCACCTGCATCAGCTA 59.777 57.895 6.60 0.00 45.16 3.32
4478 4585 2.045242 CCAGCACCTGCATCAGCT 60.045 61.111 0.00 1.54 45.16 4.24
4521 4630 4.620982 CCTCACCTTTTTCATTGTTGGAC 58.379 43.478 0.00 0.00 0.00 4.02
4557 4666 4.129737 GCCAGCAGCAGCACATGG 62.130 66.667 3.17 3.51 45.49 3.66
4582 4691 9.958180 TCCAAAAAGATAGTCATTGAGATGTAA 57.042 29.630 0.00 0.00 34.77 2.41
4584 4693 8.900781 CATCCAAAAAGATAGTCATTGAGATGT 58.099 33.333 0.00 0.00 34.77 3.06
4585 4694 8.900781 ACATCCAAAAAGATAGTCATTGAGATG 58.099 33.333 0.00 0.00 36.22 2.90
4586 4695 9.471702 AACATCCAAAAAGATAGTCATTGAGAT 57.528 29.630 0.00 0.00 0.00 2.75
4587 4696 8.868522 AACATCCAAAAAGATAGTCATTGAGA 57.131 30.769 0.00 0.00 0.00 3.27
4618 4727 1.003580 TCCCAGGTCAGCTTTGATCAC 59.996 52.381 0.00 0.00 0.00 3.06
4642 4751 0.820871 TGAAACCCAAAGCAAGCGTT 59.179 45.000 0.00 0.00 0.00 4.84
4643 4752 0.102300 GTGAAACCCAAAGCAAGCGT 59.898 50.000 0.00 0.00 0.00 5.07
4646 4755 2.168313 ACCAAGTGAAACCCAAAGCAAG 59.832 45.455 0.00 0.00 37.80 4.01
4680 4789 2.047655 CCCGTTGGCGTTGCTCTA 60.048 61.111 0.00 0.00 36.15 2.43
4696 4805 1.603739 GTCTGTTTGGGGGTCAGCC 60.604 63.158 0.00 0.00 0.00 4.85
4697 4806 1.966451 CGTCTGTTTGGGGGTCAGC 60.966 63.158 0.00 0.00 0.00 4.26
4698 4807 0.324943 ATCGTCTGTTTGGGGGTCAG 59.675 55.000 0.00 0.00 0.00 3.51
4699 4808 0.036164 CATCGTCTGTTTGGGGGTCA 59.964 55.000 0.00 0.00 0.00 4.02
4700 4809 0.323629 TCATCGTCTGTTTGGGGGTC 59.676 55.000 0.00 0.00 0.00 4.46
4701 4810 0.991920 ATCATCGTCTGTTTGGGGGT 59.008 50.000 0.00 0.00 0.00 4.95
4702 4811 2.128771 AATCATCGTCTGTTTGGGGG 57.871 50.000 0.00 0.00 0.00 5.40
4703 4812 3.255642 ACAAAATCATCGTCTGTTTGGGG 59.744 43.478 0.00 0.00 34.28 4.96
4704 4813 4.475944 GACAAAATCATCGTCTGTTTGGG 58.524 43.478 0.00 0.00 34.28 4.12
4705 4814 4.475944 GGACAAAATCATCGTCTGTTTGG 58.524 43.478 0.00 0.00 34.28 3.28
4706 4815 4.151070 CGGACAAAATCATCGTCTGTTTG 58.849 43.478 0.00 0.00 35.72 2.93
4707 4816 3.813166 ACGGACAAAATCATCGTCTGTTT 59.187 39.130 0.00 0.00 44.82 2.83
4708 4817 3.399330 ACGGACAAAATCATCGTCTGTT 58.601 40.909 0.00 0.00 44.82 3.16
4709 4818 3.040147 ACGGACAAAATCATCGTCTGT 57.960 42.857 0.00 0.00 42.91 3.41
4710 4819 4.404507 AAACGGACAAAATCATCGTCTG 57.595 40.909 0.00 0.00 41.01 3.51
4711 4820 5.432885 AAAAACGGACAAAATCATCGTCT 57.567 34.783 0.00 0.00 33.34 4.18
4730 4839 1.135333 GCCGACCCAAACAGACAAAAA 59.865 47.619 0.00 0.00 0.00 1.94
4731 4840 0.741915 GCCGACCCAAACAGACAAAA 59.258 50.000 0.00 0.00 0.00 2.44
4732 4841 1.104577 GGCCGACCCAAACAGACAAA 61.105 55.000 0.00 0.00 0.00 2.83
4733 4842 1.527380 GGCCGACCCAAACAGACAA 60.527 57.895 0.00 0.00 0.00 3.18
4734 4843 2.112297 GGCCGACCCAAACAGACA 59.888 61.111 0.00 0.00 0.00 3.41
4735 4844 3.047877 CGGCCGACCCAAACAGAC 61.048 66.667 24.07 0.00 0.00 3.51
4760 4869 1.963172 AAGAAAACTGGACGGACACC 58.037 50.000 0.00 0.00 0.00 4.16
4761 4870 4.102649 CAAAAAGAAAACTGGACGGACAC 58.897 43.478 0.00 0.00 0.00 3.67
4762 4871 4.011023 TCAAAAAGAAAACTGGACGGACA 58.989 39.130 0.00 0.00 0.00 4.02
4763 4872 4.095932 ACTCAAAAAGAAAACTGGACGGAC 59.904 41.667 0.00 0.00 0.00 4.79
4764 4873 4.266714 ACTCAAAAAGAAAACTGGACGGA 58.733 39.130 0.00 0.00 0.00 4.69
4765 4874 4.095782 TGACTCAAAAAGAAAACTGGACGG 59.904 41.667 0.00 0.00 0.00 4.79
4766 4875 5.028375 GTGACTCAAAAAGAAAACTGGACG 58.972 41.667 0.00 0.00 0.00 4.79
4767 4876 5.125578 AGGTGACTCAAAAAGAAAACTGGAC 59.874 40.000 0.00 0.00 32.90 4.02
4768 4877 5.125417 CAGGTGACTCAAAAAGAAAACTGGA 59.875 40.000 0.00 0.00 40.21 3.86
4769 4878 5.105756 ACAGGTGACTCAAAAAGAAAACTGG 60.106 40.000 0.00 0.00 40.21 4.00
4770 4879 5.801947 CACAGGTGACTCAAAAAGAAAACTG 59.198 40.000 0.00 0.00 40.21 3.16
4771 4880 5.622233 GCACAGGTGACTCAAAAAGAAAACT 60.622 40.000 3.10 0.00 40.21 2.66
4772 4881 4.562789 GCACAGGTGACTCAAAAAGAAAAC 59.437 41.667 3.10 0.00 40.21 2.43
4773 4882 4.674101 CGCACAGGTGACTCAAAAAGAAAA 60.674 41.667 3.10 0.00 40.21 2.29
4774 4883 3.181501 CGCACAGGTGACTCAAAAAGAAA 60.182 43.478 3.10 0.00 40.21 2.52
4775 4884 2.354510 CGCACAGGTGACTCAAAAAGAA 59.645 45.455 3.10 0.00 40.21 2.52
4776 4885 1.939934 CGCACAGGTGACTCAAAAAGA 59.060 47.619 3.10 0.00 40.21 2.52
4777 4886 1.597937 GCGCACAGGTGACTCAAAAAG 60.598 52.381 0.30 0.00 40.21 2.27
4778 4887 0.380378 GCGCACAGGTGACTCAAAAA 59.620 50.000 0.30 0.00 40.21 1.94
4779 4888 1.444119 GGCGCACAGGTGACTCAAAA 61.444 55.000 10.83 0.00 40.21 2.44
4780 4889 1.891919 GGCGCACAGGTGACTCAAA 60.892 57.895 10.83 0.00 40.21 2.69
4781 4890 2.280797 GGCGCACAGGTGACTCAA 60.281 61.111 10.83 0.00 40.21 3.02
4782 4891 4.314440 GGGCGCACAGGTGACTCA 62.314 66.667 10.83 0.00 40.21 3.41
4783 4892 3.825160 TTGGGCGCACAGGTGACTC 62.825 63.158 14.28 0.00 40.21 3.36
4784 4893 3.196207 ATTGGGCGCACAGGTGACT 62.196 57.895 14.28 0.00 46.44 3.41
4785 4894 2.672996 ATTGGGCGCACAGGTGAC 60.673 61.111 14.28 0.00 0.00 3.67
4786 4895 2.672651 CATTGGGCGCACAGGTGA 60.673 61.111 14.28 0.00 0.00 4.02
4787 4896 4.424566 GCATTGGGCGCACAGGTG 62.425 66.667 14.28 17.40 0.00 4.00
4796 4905 1.044790 ATGGGTAGCTTGCATTGGGC 61.045 55.000 0.00 0.00 45.13 5.36
4797 4906 1.488390 AATGGGTAGCTTGCATTGGG 58.512 50.000 0.00 0.00 0.00 4.12
4798 4907 3.055963 TGAAAATGGGTAGCTTGCATTGG 60.056 43.478 0.00 0.00 0.00 3.16
4799 4908 4.191033 TGAAAATGGGTAGCTTGCATTG 57.809 40.909 0.00 0.00 0.00 2.82
4800 4909 6.239402 GGATATGAAAATGGGTAGCTTGCATT 60.239 38.462 0.00 0.00 0.00 3.56
4801 4910 5.244626 GGATATGAAAATGGGTAGCTTGCAT 59.755 40.000 0.00 0.00 0.00 3.96
4802 4911 4.584325 GGATATGAAAATGGGTAGCTTGCA 59.416 41.667 0.00 0.00 0.00 4.08
4803 4912 4.584325 TGGATATGAAAATGGGTAGCTTGC 59.416 41.667 0.00 0.00 0.00 4.01
4804 4913 5.010012 GGTGGATATGAAAATGGGTAGCTTG 59.990 44.000 0.00 0.00 0.00 4.01
4805 4914 5.103515 AGGTGGATATGAAAATGGGTAGCTT 60.104 40.000 0.00 0.00 0.00 3.74
4806 4915 4.416848 AGGTGGATATGAAAATGGGTAGCT 59.583 41.667 0.00 0.00 0.00 3.32
4807 4916 4.520492 CAGGTGGATATGAAAATGGGTAGC 59.480 45.833 0.00 0.00 0.00 3.58
4808 4917 4.520492 GCAGGTGGATATGAAAATGGGTAG 59.480 45.833 0.00 0.00 0.00 3.18
4809 4918 4.079500 TGCAGGTGGATATGAAAATGGGTA 60.080 41.667 0.00 0.00 0.00 3.69
4810 4919 3.299503 GCAGGTGGATATGAAAATGGGT 58.700 45.455 0.00 0.00 0.00 4.51
4811 4920 3.298619 TGCAGGTGGATATGAAAATGGG 58.701 45.455 0.00 0.00 0.00 4.00
4812 4921 5.341872 TTTGCAGGTGGATATGAAAATGG 57.658 39.130 0.00 0.00 0.00 3.16
4813 4922 7.852971 AAATTTGCAGGTGGATATGAAAATG 57.147 32.000 0.00 0.00 35.32 2.32
4814 4923 9.956640 TTTAAATTTGCAGGTGGATATGAAAAT 57.043 25.926 0.00 0.00 36.43 1.82
4815 4924 9.784531 TTTTAAATTTGCAGGTGGATATGAAAA 57.215 25.926 0.00 0.00 0.00 2.29
4816 4925 9.434420 CTTTTAAATTTGCAGGTGGATATGAAA 57.566 29.630 0.00 0.00 0.00 2.69
4817 4926 8.040132 CCTTTTAAATTTGCAGGTGGATATGAA 58.960 33.333 0.00 0.00 0.00 2.57
4818 4927 7.555087 CCTTTTAAATTTGCAGGTGGATATGA 58.445 34.615 0.00 0.00 0.00 2.15
4819 4928 6.258507 GCCTTTTAAATTTGCAGGTGGATATG 59.741 38.462 0.00 0.00 0.00 1.78
4820 4929 6.348498 GCCTTTTAAATTTGCAGGTGGATAT 58.652 36.000 0.00 0.00 0.00 1.63
4821 4930 5.337975 GGCCTTTTAAATTTGCAGGTGGATA 60.338 40.000 0.00 0.00 0.00 2.59
4822 4931 4.565444 GGCCTTTTAAATTTGCAGGTGGAT 60.565 41.667 0.00 0.00 0.00 3.41
4823 4932 3.244387 GGCCTTTTAAATTTGCAGGTGGA 60.244 43.478 0.00 0.00 0.00 4.02
4824 4933 3.073678 GGCCTTTTAAATTTGCAGGTGG 58.926 45.455 0.00 0.00 0.00 4.61
4825 4934 3.073678 GGGCCTTTTAAATTTGCAGGTG 58.926 45.455 0.84 0.00 0.00 4.00
4826 4935 2.708325 TGGGCCTTTTAAATTTGCAGGT 59.292 40.909 4.53 0.00 0.00 4.00
4827 4936 3.073678 GTGGGCCTTTTAAATTTGCAGG 58.926 45.455 4.53 4.51 0.00 4.85
4828 4937 2.736192 CGTGGGCCTTTTAAATTTGCAG 59.264 45.455 4.53 0.00 0.00 4.41
4829 4938 2.548920 CCGTGGGCCTTTTAAATTTGCA 60.549 45.455 4.53 0.00 0.00 4.08
4830 4939 2.073056 CCGTGGGCCTTTTAAATTTGC 58.927 47.619 4.53 0.00 0.00 3.68
4831 4940 2.073056 GCCGTGGGCCTTTTAAATTTG 58.927 47.619 4.53 0.00 44.06 2.32
4832 4941 2.465860 GCCGTGGGCCTTTTAAATTT 57.534 45.000 4.53 0.00 44.06 1.82
4844 4953 1.527034 CAATGATCTATGGCCGTGGG 58.473 55.000 8.05 0.08 0.00 4.61
4845 4954 0.877071 GCAATGATCTATGGCCGTGG 59.123 55.000 8.05 4.40 28.69 4.94
4846 4955 0.877071 GGCAATGATCTATGGCCGTG 59.123 55.000 8.05 0.00 45.78 4.94
4847 4956 3.329300 GGCAATGATCTATGGCCGT 57.671 52.632 1.35 1.35 45.78 5.68
4850 4959 1.612676 TGCTGGCAATGATCTATGGC 58.387 50.000 14.92 14.92 42.03 4.40
4851 4960 3.824443 TGATTGCTGGCAATGATCTATGG 59.176 43.478 22.98 0.00 45.50 2.74
4852 4961 5.402398 CATGATTGCTGGCAATGATCTATG 58.598 41.667 22.98 14.68 45.50 2.23
4853 4962 4.082190 GCATGATTGCTGGCAATGATCTAT 60.082 41.667 22.98 8.48 45.50 1.98
4854 4963 3.254903 GCATGATTGCTGGCAATGATCTA 59.745 43.478 22.98 6.83 45.50 1.98
4855 4964 2.035961 GCATGATTGCTGGCAATGATCT 59.964 45.455 22.98 1.99 45.50 2.75
4856 4965 2.404215 GCATGATTGCTGGCAATGATC 58.596 47.619 22.98 11.86 45.50 2.92
4857 4966 2.526304 GCATGATTGCTGGCAATGAT 57.474 45.000 22.98 17.79 45.50 2.45
4876 4985 3.061848 ATGAACTTTGGGCGGCGG 61.062 61.111 9.78 0.00 0.00 6.13
4877 4986 2.179018 CATGAACTTTGGGCGGCG 59.821 61.111 0.51 0.51 0.00 6.46
4878 4987 2.125952 GCATGAACTTTGGGCGGC 60.126 61.111 0.00 0.00 0.00 6.53
4879 4988 2.573340 GGCATGAACTTTGGGCGG 59.427 61.111 0.00 0.00 0.00 6.13
4880 4989 2.179018 CGGCATGAACTTTGGGCG 59.821 61.111 0.00 0.00 42.72 6.13
4881 4990 2.573340 CCGGCATGAACTTTGGGC 59.427 61.111 0.00 0.00 0.00 5.36
4882 4991 2.274645 TGCCGGCATGAACTTTGGG 61.275 57.895 29.03 0.00 0.00 4.12
4883 4992 1.080569 GTGCCGGCATGAACTTTGG 60.081 57.895 35.23 0.00 0.00 3.28
4884 4993 1.080569 GGTGCCGGCATGAACTTTG 60.081 57.895 35.23 0.00 0.00 2.77
4885 4994 0.899717 ATGGTGCCGGCATGAACTTT 60.900 50.000 35.23 10.72 0.00 2.66
4886 4995 1.304381 ATGGTGCCGGCATGAACTT 60.304 52.632 35.23 17.69 0.00 2.66
4887 4996 2.048023 CATGGTGCCGGCATGAACT 61.048 57.895 35.23 13.24 0.00 3.01
4888 4997 2.491152 CATGGTGCCGGCATGAAC 59.509 61.111 35.23 22.70 0.00 3.18
4889 4998 2.549169 TAGCATGGTGCCGGCATGAA 62.549 55.000 35.23 21.48 46.52 2.57
4890 4999 2.946172 CTAGCATGGTGCCGGCATGA 62.946 60.000 35.23 22.66 46.52 3.07
4891 5000 2.516695 TAGCATGGTGCCGGCATG 60.517 61.111 35.23 27.53 46.52 4.06
4892 5001 2.203252 CTAGCATGGTGCCGGCAT 60.203 61.111 35.23 18.54 46.52 4.40
4902 5011 3.760965 TATATGCCGGCCGCTAGCATG 62.761 57.143 35.66 18.26 46.30 4.06
4904 5013 1.822114 TTATATGCCGGCCGCTAGCA 61.822 55.000 26.11 26.11 46.50 3.49
4905 5014 0.462047 ATTATATGCCGGCCGCTAGC 60.462 55.000 26.77 19.31 42.60 3.42
4906 5015 1.290203 CATTATATGCCGGCCGCTAG 58.710 55.000 26.77 7.74 38.78 3.42
4907 5016 3.451793 CATTATATGCCGGCCGCTA 57.548 52.632 26.77 13.54 38.78 4.26
4908 5017 4.301505 CATTATATGCCGGCCGCT 57.698 55.556 26.77 11.49 38.78 5.52
4917 5026 5.302568 TCTTTTTGGAGGCTGGCATTATATG 59.697 40.000 3.38 0.00 0.00 1.78
4918 5027 5.302823 GTCTTTTTGGAGGCTGGCATTATAT 59.697 40.000 3.38 0.00 0.00 0.86
4919 5028 4.644685 GTCTTTTTGGAGGCTGGCATTATA 59.355 41.667 3.38 0.00 0.00 0.98
4920 5029 3.448660 GTCTTTTTGGAGGCTGGCATTAT 59.551 43.478 3.38 0.00 0.00 1.28
4921 5030 2.825532 GTCTTTTTGGAGGCTGGCATTA 59.174 45.455 3.38 0.00 0.00 1.90
4922 5031 1.620323 GTCTTTTTGGAGGCTGGCATT 59.380 47.619 3.38 0.00 0.00 3.56
4923 5032 1.260544 GTCTTTTTGGAGGCTGGCAT 58.739 50.000 3.38 0.00 0.00 4.40
4924 5033 0.827507 GGTCTTTTTGGAGGCTGGCA 60.828 55.000 3.38 0.00 0.00 4.92
4925 5034 0.827507 TGGTCTTTTTGGAGGCTGGC 60.828 55.000 0.00 0.00 0.00 4.85
4926 5035 1.821136 GATGGTCTTTTTGGAGGCTGG 59.179 52.381 0.00 0.00 0.00 4.85
4927 5036 2.229784 GTGATGGTCTTTTTGGAGGCTG 59.770 50.000 0.00 0.00 0.00 4.85
4928 5037 2.158475 TGTGATGGTCTTTTTGGAGGCT 60.158 45.455 0.00 0.00 0.00 4.58
4929 5038 2.238521 TGTGATGGTCTTTTTGGAGGC 58.761 47.619 0.00 0.00 0.00 4.70
4930 5039 5.256474 ACTATGTGATGGTCTTTTTGGAGG 58.744 41.667 0.00 0.00 0.00 4.30
4931 5040 6.428385 GACTATGTGATGGTCTTTTTGGAG 57.572 41.667 0.00 0.00 37.72 3.86
4944 5053 3.461061 CGTGCCATCAAGACTATGTGAT 58.539 45.455 0.00 0.00 34.78 3.06
4945 5054 2.892374 CGTGCCATCAAGACTATGTGA 58.108 47.619 0.00 0.00 0.00 3.58
4946 5055 1.328680 GCGTGCCATCAAGACTATGTG 59.671 52.381 0.00 0.00 0.00 3.21
4947 5056 1.208052 AGCGTGCCATCAAGACTATGT 59.792 47.619 0.00 0.00 0.00 2.29
4948 5057 1.945387 AGCGTGCCATCAAGACTATG 58.055 50.000 0.00 0.00 0.00 2.23
4949 5058 2.283298 CAAGCGTGCCATCAAGACTAT 58.717 47.619 0.00 0.00 0.00 2.12
4950 5059 1.725641 CAAGCGTGCCATCAAGACTA 58.274 50.000 0.00 0.00 0.00 2.59
4951 5060 1.580845 GCAAGCGTGCCATCAAGACT 61.581 55.000 14.16 0.00 45.68 3.24
4952 5061 1.154150 GCAAGCGTGCCATCAAGAC 60.154 57.895 14.16 0.00 45.68 3.01
4953 5062 3.266964 GCAAGCGTGCCATCAAGA 58.733 55.556 14.16 0.00 45.68 3.02
4971 5080 4.201679 CATGCATGCCGGCCACTG 62.202 66.667 26.77 19.53 0.00 3.66
4981 5090 0.319986 TTTGTGTGCTGGCATGCATG 60.320 50.000 22.70 22.70 45.23 4.06
4982 5091 0.393448 TTTTGTGTGCTGGCATGCAT 59.607 45.000 21.36 0.00 45.23 3.96
4983 5092 0.177373 TTTTTGTGTGCTGGCATGCA 59.823 45.000 21.36 4.79 41.05 3.96
4984 5093 2.989196 TTTTTGTGTGCTGGCATGC 58.011 47.368 9.90 9.90 0.00 4.06
4999 5108 2.304092 GGTCGAACTCCCAACCTTTTT 58.696 47.619 0.00 0.00 0.00 1.94
5000 5109 1.213430 TGGTCGAACTCCCAACCTTTT 59.787 47.619 0.33 0.00 32.82 2.27
5001 5110 0.841289 TGGTCGAACTCCCAACCTTT 59.159 50.000 0.33 0.00 32.82 3.11
5002 5111 0.108019 GTGGTCGAACTCCCAACCTT 59.892 55.000 0.33 0.00 32.82 3.50
5003 5112 1.752833 GTGGTCGAACTCCCAACCT 59.247 57.895 0.33 0.00 32.82 3.50
5004 5113 1.666872 CGTGGTCGAACTCCCAACC 60.667 63.158 0.33 0.00 39.71 3.77
5005 5114 2.315386 GCGTGGTCGAACTCCCAAC 61.315 63.158 0.33 0.00 39.71 3.77
5006 5115 2.029964 GCGTGGTCGAACTCCCAA 59.970 61.111 0.33 0.00 39.71 4.12
5007 5116 3.998672 GGCGTGGTCGAACTCCCA 61.999 66.667 0.33 0.00 39.71 4.37
5008 5117 3.310860 ATGGCGTGGTCGAACTCCC 62.311 63.158 0.33 2.56 39.71 4.30
5009 5118 1.810030 GATGGCGTGGTCGAACTCC 60.810 63.158 0.33 0.69 39.71 3.85
5010 5119 0.802607 GAGATGGCGTGGTCGAACTC 60.803 60.000 0.33 0.00 39.71 3.01
5011 5120 1.215647 GAGATGGCGTGGTCGAACT 59.784 57.895 0.33 0.00 39.71 3.01
5012 5121 2.158959 CGAGATGGCGTGGTCGAAC 61.159 63.158 0.00 0.00 39.71 3.95
5013 5122 2.180769 CGAGATGGCGTGGTCGAA 59.819 61.111 2.60 0.00 39.71 3.71
5014 5123 3.822192 CCGAGATGGCGTGGTCGA 61.822 66.667 9.13 0.00 39.71 4.20
5023 5132 3.094062 ATGACCACGGCCGAGATGG 62.094 63.158 35.90 30.56 42.50 3.51
5024 5133 1.884464 CATGACCACGGCCGAGATG 60.884 63.158 35.90 20.38 0.00 2.90
5025 5134 1.899437 AACATGACCACGGCCGAGAT 61.899 55.000 35.90 12.35 0.00 2.75
5026 5135 1.252215 TAACATGACCACGGCCGAGA 61.252 55.000 35.90 8.83 0.00 4.04
5027 5136 0.806102 CTAACATGACCACGGCCGAG 60.806 60.000 35.90 25.83 0.00 4.63
5028 5137 1.216977 CTAACATGACCACGGCCGA 59.783 57.895 35.90 9.64 0.00 5.54
5029 5138 2.461110 GCTAACATGACCACGGCCG 61.461 63.158 26.86 26.86 0.00 6.13
5030 5139 1.376683 TGCTAACATGACCACGGCC 60.377 57.895 0.00 0.00 0.00 6.13
5031 5140 1.794222 GTGCTAACATGACCACGGC 59.206 57.895 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.