Multiple sequence alignment - TraesCS7B01G061700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G061700 chr7B 100.000 2710 0 0 1 2710 64073739 64071030 0.000000e+00 5005
1 TraesCS7B01G061700 chr7A 89.982 2755 165 51 1 2710 110427878 110425190 0.000000e+00 3456
2 TraesCS7B01G061700 chr7D 93.248 1096 59 10 599 1681 105461149 105460056 0.000000e+00 1600
3 TraesCS7B01G061700 chr7D 93.678 522 29 4 4 525 105463322 105462805 0.000000e+00 778
4 TraesCS7B01G061700 chr7D 86.378 624 30 19 2109 2704 105457774 105457178 4.920000e-177 630
5 TraesCS7B01G061700 chr7D 86.943 314 22 11 1805 2118 105459664 105459370 4.320000e-88 335


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G061700 chr7B 64071030 64073739 2709 True 5005.00 5005 100.00000 1 2710 1 chr7B.!!$R1 2709
1 TraesCS7B01G061700 chr7A 110425190 110427878 2688 True 3456.00 3456 89.98200 1 2710 1 chr7A.!!$R1 2709
2 TraesCS7B01G061700 chr7D 105457178 105463322 6144 True 835.75 1600 90.06175 4 2704 4 chr7D.!!$R1 2700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 2587 0.332972 GCTGAACCCCATCCTCCTTT 59.667 55.0 0.0 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2312 5835 0.389166 GCTTCACACCCACGAGAGAG 60.389 60.0 0.0 0.0 0.0 3.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.860941 TTGAACCTGGCAAAATTAGAACA 57.139 34.783 0.00 0.00 0.00 3.18
153 154 1.275421 CCACCCCTCCCCTCTTTCTC 61.275 65.000 0.00 0.00 0.00 2.87
249 250 1.354040 CGCATCATCGGATAAGGCTC 58.646 55.000 0.00 0.00 30.87 4.70
264 265 2.246739 GCTCGCTGTTGCTGTCACA 61.247 57.895 0.00 0.00 36.97 3.58
268 269 0.800631 CGCTGTTGCTGTCACATCAT 59.199 50.000 0.00 0.00 36.97 2.45
390 391 1.014352 AAAACCATCAGCCGCGTATC 58.986 50.000 4.92 0.00 0.00 2.24
464 465 1.318158 GCAGTGGCCATCCCTTTCTG 61.318 60.000 9.72 11.07 33.79 3.02
466 467 0.622665 AGTGGCCATCCCTTTCTGAG 59.377 55.000 9.72 0.00 0.00 3.35
468 469 1.213926 GTGGCCATCCCTTTCTGAGAT 59.786 52.381 9.72 0.00 0.00 2.75
511 512 4.095036 GCAAGCTAAGGACAGTTATGGTTC 59.905 45.833 0.00 0.00 0.00 3.62
579 2177 3.610821 CGGCGACAATTACTATGGATCGA 60.611 47.826 0.00 0.00 0.00 3.59
580 2178 3.921021 GGCGACAATTACTATGGATCGAG 59.079 47.826 0.00 0.00 0.00 4.04
636 2234 9.965824 CATAAGGTTTACACAGTTTTGAGAATT 57.034 29.630 0.00 0.00 0.00 2.17
664 2262 9.755804 ATAATGTATCTATAGCGACATGGATTG 57.244 33.333 15.87 0.00 32.92 2.67
701 2299 6.606768 TGAAATGCAAAAAGTCCAACAAAAC 58.393 32.000 0.00 0.00 0.00 2.43
706 2306 6.974965 TGCAAAAAGTCCAACAAAACAAATT 58.025 28.000 0.00 0.00 0.00 1.82
713 2313 9.533253 AAAGTCCAACAAAACAAATTATCAGAG 57.467 29.630 0.00 0.00 0.00 3.35
722 2322 9.612620 CAAAACAAATTATCAGAGACCTACAAC 57.387 33.333 0.00 0.00 0.00 3.32
822 2426 0.940126 CTTCCTTCCGATGATTGCCG 59.060 55.000 0.00 0.00 0.00 5.69
894 2498 2.938956 GGCTCTGTAACTGGCCATAT 57.061 50.000 5.51 0.00 43.59 1.78
908 2512 2.304470 GGCCATATCCTTCCTTCCTCTC 59.696 54.545 0.00 0.00 0.00 3.20
973 2579 1.203441 TCTGCTCTGCTGAACCCCAT 61.203 55.000 0.00 0.00 33.82 4.00
974 2580 0.747283 CTGCTCTGCTGAACCCCATC 60.747 60.000 0.00 0.00 0.00 3.51
980 2586 0.846427 TGCTGAACCCCATCCTCCTT 60.846 55.000 0.00 0.00 0.00 3.36
981 2587 0.332972 GCTGAACCCCATCCTCCTTT 59.667 55.000 0.00 0.00 0.00 3.11
1176 2782 1.608590 CCAACCAGCAACAAGGTACTG 59.391 52.381 0.00 0.00 40.86 2.74
1189 2795 8.512138 GCAACAAGGTACTGTAAATTATCTTGT 58.488 33.333 3.63 3.63 46.85 3.16
1243 2849 3.726557 ATGCTTGATCCAAGGAGACAA 57.273 42.857 8.55 9.82 44.28 3.18
1276 2889 6.638468 CCTCTCTGAATTGTTTTTCTTTTCGG 59.362 38.462 0.00 0.00 0.00 4.30
1309 2922 3.452264 TCTGAATTGGTGATCTGATCGGT 59.548 43.478 12.65 0.00 0.00 4.69
1362 2975 1.255667 GCTACAGGGACGACAAGGGA 61.256 60.000 0.00 0.00 0.00 4.20
1445 3058 1.966451 GCTTCCCGTGGTGAGTTGG 60.966 63.158 0.00 0.00 0.00 3.77
1570 3187 5.485620 TCTTGTCTGATGATCAACCTGAAG 58.514 41.667 0.00 0.00 0.00 3.02
1573 3190 3.870419 GTCTGATGATCAACCTGAAGCTC 59.130 47.826 0.00 0.00 0.00 4.09
1594 3211 3.811497 TCACTCATTTTGTGCTGTGAGAG 59.189 43.478 8.09 0.92 40.30 3.20
1681 3298 2.870161 CGACGACGGTCTTCTGCG 60.870 66.667 12.10 0.00 41.16 5.18
1712 3329 1.055040 AGAAGTGGCAGCTCTGAAGT 58.945 50.000 0.29 0.00 0.00 3.01
1713 3330 1.001860 AGAAGTGGCAGCTCTGAAGTC 59.998 52.381 0.29 0.00 0.00 3.01
1714 3331 1.001860 GAAGTGGCAGCTCTGAAGTCT 59.998 52.381 0.29 0.00 0.00 3.24
1715 3332 0.321021 AGTGGCAGCTCTGAAGTCTG 59.679 55.000 0.29 0.00 32.87 3.51
1716 3333 0.319728 GTGGCAGCTCTGAAGTCTGA 59.680 55.000 0.29 0.00 31.98 3.27
1717 3334 1.051008 TGGCAGCTCTGAAGTCTGAA 58.949 50.000 0.29 0.00 31.98 3.02
1718 3335 1.270518 TGGCAGCTCTGAAGTCTGAAC 60.271 52.381 0.29 0.22 31.98 3.18
1722 3339 3.617045 GCAGCTCTGAAGTCTGAACTGAT 60.617 47.826 17.69 0.00 39.09 2.90
1760 3377 5.237344 GCACCGATCAAGTAAGAGCAATAAT 59.763 40.000 0.00 0.00 0.00 1.28
1774 3391 6.126409 AGAGCAATAATTGGAATAACCGGAA 58.874 36.000 9.46 0.00 42.61 4.30
1776 3393 4.982295 GCAATAATTGGAATAACCGGAAGC 59.018 41.667 9.46 0.00 42.61 3.86
1777 3394 5.451242 GCAATAATTGGAATAACCGGAAGCA 60.451 40.000 9.46 0.00 42.61 3.91
1950 3843 5.828328 CAGTTAGAAAGGTTTCTGAAAGGGT 59.172 40.000 14.08 0.00 46.34 4.34
2002 3898 4.286813 AGATAGGTGGGGAGATCTGAAA 57.713 45.455 0.00 0.00 0.00 2.69
2003 3899 4.230455 AGATAGGTGGGGAGATCTGAAAG 58.770 47.826 0.00 0.00 0.00 2.62
2004 3900 1.589414 AGGTGGGGAGATCTGAAAGG 58.411 55.000 0.00 0.00 0.00 3.11
2005 3901 0.548510 GGTGGGGAGATCTGAAAGGG 59.451 60.000 0.00 0.00 0.00 3.95
2007 3903 1.065126 GTGGGGAGATCTGAAAGGGTG 60.065 57.143 0.00 0.00 0.00 4.61
2008 3904 1.203428 TGGGGAGATCTGAAAGGGTGA 60.203 52.381 0.00 0.00 0.00 4.02
2044 3940 1.342174 CCCATTGCAATATGTGGCCTC 59.658 52.381 12.53 0.00 0.00 4.70
2051 3947 2.420547 GCAATATGTGGCCTCTGACTGA 60.421 50.000 3.32 0.00 0.00 3.41
2081 3977 5.359292 CAGTATCATCCTCTGTTCTCACTGA 59.641 44.000 0.00 0.00 33.24 3.41
2083 3979 4.797800 TCATCCTCTGTTCTCACTGAAG 57.202 45.455 0.00 0.00 35.01 3.02
2084 3980 4.155709 TCATCCTCTGTTCTCACTGAAGT 58.844 43.478 0.00 0.00 35.01 3.01
2100 3996 5.237344 CACTGAAGTGGGAGTTAAAGAACTG 59.763 44.000 2.35 0.00 42.79 3.16
2108 4004 5.995897 TGGGAGTTAAAGAACTGTAGAAAGC 59.004 40.000 0.00 0.00 46.23 3.51
2134 5637 7.575894 CGATTTTCGTTAAAACAAAATCGCAAA 59.424 29.630 27.97 7.33 46.54 3.68
2135 5638 7.918497 TTTTCGTTAAAACAAAATCGCAAAC 57.082 28.000 0.00 0.00 29.59 2.93
2137 5640 6.627690 TCGTTAAAACAAAATCGCAAACAA 57.372 29.167 0.00 0.00 0.00 2.83
2186 5707 5.729510 TGGAAACAAACAGAAAAGGAAAGG 58.270 37.500 0.00 0.00 37.44 3.11
2187 5708 5.482175 TGGAAACAAACAGAAAAGGAAAGGA 59.518 36.000 0.00 0.00 37.44 3.36
2188 5709 6.014156 TGGAAACAAACAGAAAAGGAAAGGAA 60.014 34.615 0.00 0.00 37.44 3.36
2189 5710 6.876789 GGAAACAAACAGAAAAGGAAAGGAAA 59.123 34.615 0.00 0.00 0.00 3.13
2190 5711 7.389330 GGAAACAAACAGAAAAGGAAAGGAAAA 59.611 33.333 0.00 0.00 0.00 2.29
2191 5712 8.684386 AAACAAACAGAAAAGGAAAGGAAAAA 57.316 26.923 0.00 0.00 0.00 1.94
2192 5713 7.905604 ACAAACAGAAAAGGAAAGGAAAAAG 57.094 32.000 0.00 0.00 0.00 2.27
2217 5738 8.055181 AGAAACTATGTTCATCTCTCTCTCTCT 58.945 37.037 0.00 0.00 0.00 3.10
2305 5828 4.258543 CAAGTCGGTAGAACTCTCTCTCT 58.741 47.826 0.00 0.00 32.70 3.10
2306 5829 4.133013 AGTCGGTAGAACTCTCTCTCTC 57.867 50.000 0.00 0.00 32.70 3.20
2307 5830 3.773119 AGTCGGTAGAACTCTCTCTCTCT 59.227 47.826 0.00 0.00 32.70 3.10
2308 5831 4.117685 GTCGGTAGAACTCTCTCTCTCTC 58.882 52.174 0.00 0.00 32.70 3.20
2309 5832 4.028131 TCGGTAGAACTCTCTCTCTCTCT 58.972 47.826 0.00 0.00 32.70 3.10
2310 5833 4.098960 TCGGTAGAACTCTCTCTCTCTCTC 59.901 50.000 0.00 0.00 32.70 3.20
2311 5834 4.099573 CGGTAGAACTCTCTCTCTCTCTCT 59.900 50.000 0.00 0.00 32.70 3.10
2312 5835 5.602628 GGTAGAACTCTCTCTCTCTCTCTC 58.397 50.000 0.00 0.00 32.70 3.20
2313 5836 5.364157 GGTAGAACTCTCTCTCTCTCTCTCT 59.636 48.000 0.00 0.00 32.70 3.10
2314 5837 5.606348 AGAACTCTCTCTCTCTCTCTCTC 57.394 47.826 0.00 0.00 0.00 3.20
2315 5838 5.276440 AGAACTCTCTCTCTCTCTCTCTCT 58.724 45.833 0.00 0.00 0.00 3.10
2316 5839 5.362430 AGAACTCTCTCTCTCTCTCTCTCTC 59.638 48.000 0.00 0.00 0.00 3.20
2317 5840 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
2318 5841 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
2325 5848 1.065782 TCTCTCTCTCTCTCGTGGGTG 60.066 57.143 0.00 0.00 0.00 4.61
2394 5918 4.548669 ACAGTAGGATCTCCTTAACCTCC 58.451 47.826 3.64 0.00 46.09 4.30
2500 6030 2.482721 ACGAACCACTTAGAAAATGGCG 59.517 45.455 0.00 0.00 36.96 5.69
2501 6031 2.739913 CGAACCACTTAGAAAATGGCGA 59.260 45.455 0.00 0.00 36.96 5.54
2507 6037 7.062749 ACCACTTAGAAAATGGCGATATCTA 57.937 36.000 0.34 1.54 36.96 1.98
2522 6055 1.428869 ATCTAGCCCCACCAGATCAC 58.571 55.000 0.00 0.00 0.00 3.06
2540 6076 8.758715 CCAGATCACAAATTCAAAGAAAAGTTC 58.241 33.333 0.00 0.00 0.00 3.01
2595 6138 7.062255 GCATTCCAAATAGTAAAAACTGCTGAC 59.938 37.037 0.00 0.00 0.00 3.51
2598 6141 6.995686 TCCAAATAGTAAAAACTGCTGACTGA 59.004 34.615 0.00 0.00 0.00 3.41
2607 6150 4.342862 AACTGCTGACTGATTGTACACT 57.657 40.909 0.00 0.00 0.00 3.55
2609 6152 4.060900 ACTGCTGACTGATTGTACACTTG 58.939 43.478 0.00 0.00 0.00 3.16
2704 6247 3.413558 CCGAAATTAACGCAGTAACAGC 58.586 45.455 0.00 0.00 45.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.028561 AACATTGGGTGGGAATTGCT 57.971 45.000 0.00 0.00 0.00 3.91
121 122 1.352352 AGGGGTGGTCATCTTGTCTTG 59.648 52.381 0.00 0.00 0.00 3.02
153 154 2.436646 AACGGGGCAGCGATCTTG 60.437 61.111 0.00 0.00 0.00 3.02
180 181 1.180456 TGCTTTGCCATGTGACCCAG 61.180 55.000 0.00 0.00 0.00 4.45
182 183 0.609662 ATTGCTTTGCCATGTGACCC 59.390 50.000 0.00 0.00 0.00 4.46
249 250 0.800631 ATGATGTGACAGCAACAGCG 59.199 50.000 7.89 0.00 32.21 5.18
264 265 9.772605 TTCAGCATAAATAATCCCCAATATGAT 57.227 29.630 0.00 0.00 0.00 2.45
268 269 7.339212 CGGATTCAGCATAAATAATCCCCAATA 59.661 37.037 0.00 0.00 42.89 1.90
413 414 6.458751 CCAGCTTTGGTATAATTAGCAGTGTG 60.459 42.308 0.00 0.00 37.16 3.82
464 465 6.901357 GCATCACACAAAAACACAAAAATCTC 59.099 34.615 0.00 0.00 0.00 2.75
466 467 6.541086 TGCATCACACAAAAACACAAAAATC 58.459 32.000 0.00 0.00 0.00 2.17
468 469 5.929697 TGCATCACACAAAAACACAAAAA 57.070 30.435 0.00 0.00 0.00 1.94
539 541 6.199531 TGTCGCCGCTTTAGTATATAACTTTG 59.800 38.462 0.00 0.00 39.80 2.77
550 2142 2.968675 AGTAATTGTCGCCGCTTTAGT 58.031 42.857 0.00 0.00 0.00 2.24
551 2143 4.084537 CCATAGTAATTGTCGCCGCTTTAG 60.085 45.833 0.00 0.00 0.00 1.85
558 2150 3.909430 TCGATCCATAGTAATTGTCGCC 58.091 45.455 0.00 0.00 0.00 5.54
579 2177 6.886178 TGCTAAATCTTTTACTACTCCCCT 57.114 37.500 0.00 0.00 0.00 4.79
580 2178 8.521170 AAATGCTAAATCTTTTACTACTCCCC 57.479 34.615 0.00 0.00 0.00 4.81
607 2205 9.349713 TCTCAAAACTGTGTAAACCTTATGATT 57.650 29.630 0.00 0.00 0.00 2.57
664 2262 4.212213 TGCATTTCAGTTGCATTTTTGC 57.788 36.364 0.00 0.00 44.73 3.68
686 2284 9.883142 TCTGATAATTTGTTTTGTTGGACTTTT 57.117 25.926 0.00 0.00 0.00 2.27
701 2299 6.338146 TCCGTTGTAGGTCTCTGATAATTTG 58.662 40.000 0.00 0.00 0.00 2.32
706 2306 3.952323 CCTTCCGTTGTAGGTCTCTGATA 59.048 47.826 0.00 0.00 0.00 2.15
713 2313 0.672711 GTGGCCTTCCGTTGTAGGTC 60.673 60.000 3.32 0.00 34.45 3.85
894 2498 0.496382 TTGGGGAGAGGAAGGAAGGA 59.504 55.000 0.00 0.00 0.00 3.36
908 2512 9.374838 CTAAAATTCTGAATGATTTTCTTGGGG 57.625 33.333 3.22 0.00 30.64 4.96
973 2579 2.158519 GGTTGGTTTCTGGAAAGGAGGA 60.159 50.000 0.00 0.00 0.00 3.71
974 2580 2.239400 GGTTGGTTTCTGGAAAGGAGG 58.761 52.381 0.00 0.00 0.00 4.30
980 2586 4.100808 CCATTTTCTGGTTGGTTTCTGGAA 59.899 41.667 0.00 0.00 40.49 3.53
981 2587 3.640967 CCATTTTCTGGTTGGTTTCTGGA 59.359 43.478 0.00 0.00 40.49 3.86
1102 2708 3.432445 ATCCATGGGCTGCAGAGGC 62.432 63.158 20.43 4.03 44.21 4.70
1176 2782 6.238022 GCACCGACCAGTACAAGATAATTTAC 60.238 42.308 0.00 0.00 0.00 2.01
1189 2795 0.249699 CAAGTGTGCACCGACCAGTA 60.250 55.000 15.69 0.00 0.00 2.74
1214 2820 3.497103 TGGATCAAGCATAGACATGGG 57.503 47.619 0.00 0.00 32.36 4.00
1243 2849 4.713792 ACAATTCAGAGAGGAAACCAGT 57.286 40.909 0.00 0.00 0.00 4.00
1276 2889 5.745227 TCACCAATTCAGAGAGGATTTACC 58.255 41.667 0.00 0.00 39.35 2.85
1309 2922 0.113776 ACCTGGTCCTCGAACACCTA 59.886 55.000 12.51 0.95 33.36 3.08
1445 3058 6.981762 ACATTCAGAAACAGATGATCAGTC 57.018 37.500 0.09 0.00 0.00 3.51
1570 3187 2.291465 TCACAGCACAAAATGAGTGAGC 59.709 45.455 0.00 0.00 38.92 4.26
1573 3190 4.143194 CTCTCACAGCACAAAATGAGTG 57.857 45.455 0.00 0.00 39.68 3.51
1594 3211 2.439156 GGACTCCCACATGCCTGC 60.439 66.667 0.00 0.00 0.00 4.85
1600 3217 1.201429 GGTGACCTGGACTCCCACAT 61.201 60.000 0.00 0.00 37.58 3.21
1681 3298 1.129437 GCCACTTCTGATCGTTCTTGC 59.871 52.381 0.00 0.00 0.00 4.01
1712 3329 1.630369 CCACCCCTTGATCAGTTCAGA 59.370 52.381 0.00 0.00 35.27 3.27
1713 3330 1.340405 CCCACCCCTTGATCAGTTCAG 60.340 57.143 0.00 0.00 35.27 3.02
1714 3331 0.698238 CCCACCCCTTGATCAGTTCA 59.302 55.000 0.00 0.00 0.00 3.18
1715 3332 0.034089 CCCCACCCCTTGATCAGTTC 60.034 60.000 0.00 0.00 0.00 3.01
1716 3333 1.509548 CCCCCACCCCTTGATCAGTT 61.510 60.000 0.00 0.00 0.00 3.16
1717 3334 1.930656 CCCCCACCCCTTGATCAGT 60.931 63.158 0.00 0.00 0.00 3.41
1718 3335 3.010144 CCCCCACCCCTTGATCAG 58.990 66.667 0.00 0.00 0.00 2.90
1737 3354 6.851222 ATTATTGCTCTTACTTGATCGGTG 57.149 37.500 2.01 0.00 0.00 4.94
1760 3377 2.432444 CTGTGCTTCCGGTTATTCCAA 58.568 47.619 0.00 0.00 35.57 3.53
1906 3791 9.915629 CTAACTGTTTCTGTATACAAAGAGTCT 57.084 33.333 16.27 11.11 35.62 3.24
1950 3843 6.598064 TCGACACAAGTAGTATCAAGATCTCA 59.402 38.462 0.00 0.00 0.00 3.27
2005 3901 1.367599 GCTGGCTGCAGTGATCTCAC 61.368 60.000 16.64 2.01 46.77 3.51
2007 3903 1.818785 GGCTGGCTGCAGTGATCTC 60.819 63.158 16.64 0.00 45.15 2.75
2008 3904 2.271497 GGCTGGCTGCAGTGATCT 59.729 61.111 16.64 0.00 45.15 2.75
2051 3947 6.619464 AGAACAGAGGATGATACTGATACCT 58.381 40.000 0.00 0.00 35.85 3.08
2053 3949 7.230510 AGTGAGAACAGAGGATGATACTGATAC 59.769 40.741 0.00 0.00 35.85 2.24
2054 3950 7.230309 CAGTGAGAACAGAGGATGATACTGATA 59.770 40.741 0.00 0.00 35.15 2.15
2055 3951 6.040729 CAGTGAGAACAGAGGATGATACTGAT 59.959 42.308 0.00 0.00 35.15 2.90
2056 3952 5.359292 CAGTGAGAACAGAGGATGATACTGA 59.641 44.000 0.00 0.00 35.15 3.41
2057 3953 5.359292 TCAGTGAGAACAGAGGATGATACTG 59.641 44.000 0.00 0.00 37.62 2.74
2058 3954 5.514169 TCAGTGAGAACAGAGGATGATACT 58.486 41.667 0.00 0.00 0.00 2.12
2081 3977 6.742559 TCTACAGTTCTTTAACTCCCACTT 57.257 37.500 0.00 0.00 44.28 3.16
2083 3979 6.073167 GCTTTCTACAGTTCTTTAACTCCCAC 60.073 42.308 0.00 0.00 44.28 4.61
2084 3980 5.995897 GCTTTCTACAGTTCTTTAACTCCCA 59.004 40.000 0.00 0.00 44.28 4.37
2100 3996 7.825627 TGTTTTAACGAAAATCGCTTTCTAC 57.174 32.000 0.00 0.00 45.12 2.59
2119 5620 6.234723 ACTGTTTGTTTGCGATTTTGTTTT 57.765 29.167 0.00 0.00 0.00 2.43
2134 5637 7.589954 GTCGACATAATTTTGCTAACTGTTTGT 59.410 33.333 11.55 0.00 0.00 2.83
2135 5638 7.060633 GGTCGACATAATTTTGCTAACTGTTTG 59.939 37.037 18.91 0.00 0.00 2.93
2137 5640 6.205853 TGGTCGACATAATTTTGCTAACTGTT 59.794 34.615 18.91 0.00 0.00 3.16
2177 5698 9.817809 GAACATAGTTTCTTTTTCCTTTCCTTT 57.182 29.630 0.00 0.00 0.00 3.11
2183 5704 9.579932 AGAGATGAACATAGTTTCTTTTTCCTT 57.420 29.630 0.00 0.00 0.00 3.36
2184 5705 9.225436 GAGAGATGAACATAGTTTCTTTTTCCT 57.775 33.333 0.00 0.00 0.00 3.36
2185 5706 9.225436 AGAGAGATGAACATAGTTTCTTTTTCC 57.775 33.333 0.00 0.00 0.00 3.13
2188 5709 9.651913 GAGAGAGAGATGAACATAGTTTCTTTT 57.348 33.333 0.00 0.00 0.00 2.27
2189 5710 9.034800 AGAGAGAGAGATGAACATAGTTTCTTT 57.965 33.333 0.00 0.00 0.00 2.52
2190 5711 8.593945 AGAGAGAGAGATGAACATAGTTTCTT 57.406 34.615 0.00 0.00 0.00 2.52
2191 5712 8.055181 AGAGAGAGAGAGATGAACATAGTTTCT 58.945 37.037 0.00 0.00 0.00 2.52
2192 5713 8.225603 AGAGAGAGAGAGATGAACATAGTTTC 57.774 38.462 0.00 0.00 0.00 2.78
2245 5768 6.849811 CAGTGTTGATGATTGATTCGCTAATC 59.150 38.462 4.06 4.06 41.69 1.75
2246 5769 6.539826 TCAGTGTTGATGATTGATTCGCTAAT 59.460 34.615 0.00 0.00 0.00 1.73
2247 5770 5.874261 TCAGTGTTGATGATTGATTCGCTAA 59.126 36.000 0.00 0.00 0.00 3.09
2305 5828 1.065782 CACCCACGAGAGAGAGAGAGA 60.066 57.143 0.00 0.00 0.00 3.10
2306 5829 1.339631 ACACCCACGAGAGAGAGAGAG 60.340 57.143 0.00 0.00 0.00 3.20
2307 5830 0.693622 ACACCCACGAGAGAGAGAGA 59.306 55.000 0.00 0.00 0.00 3.10
2308 5831 0.808125 CACACCCACGAGAGAGAGAG 59.192 60.000 0.00 0.00 0.00 3.20
2309 5832 0.400594 TCACACCCACGAGAGAGAGA 59.599 55.000 0.00 0.00 0.00 3.10
2310 5833 1.201181 CTTCACACCCACGAGAGAGAG 59.799 57.143 0.00 0.00 0.00 3.20
2311 5834 1.248486 CTTCACACCCACGAGAGAGA 58.752 55.000 0.00 0.00 0.00 3.10
2312 5835 0.389166 GCTTCACACCCACGAGAGAG 60.389 60.000 0.00 0.00 0.00 3.20
2313 5836 0.827925 AGCTTCACACCCACGAGAGA 60.828 55.000 0.00 0.00 0.00 3.10
2314 5837 0.668706 CAGCTTCACACCCACGAGAG 60.669 60.000 0.00 0.00 0.00 3.20
2315 5838 1.367471 CAGCTTCACACCCACGAGA 59.633 57.895 0.00 0.00 0.00 4.04
2316 5839 1.669115 CCAGCTTCACACCCACGAG 60.669 63.158 0.00 0.00 0.00 4.18
2317 5840 1.480212 ATCCAGCTTCACACCCACGA 61.480 55.000 0.00 0.00 0.00 4.35
2318 5841 1.003355 ATCCAGCTTCACACCCACG 60.003 57.895 0.00 0.00 0.00 4.94
2325 5848 1.335324 GCACACAACATCCAGCTTCAC 60.335 52.381 0.00 0.00 0.00 3.18
2500 6030 3.196685 GTGATCTGGTGGGGCTAGATATC 59.803 52.174 0.00 0.00 44.09 1.63
2501 6031 3.177228 GTGATCTGGTGGGGCTAGATAT 58.823 50.000 0.00 0.00 44.09 1.63
2507 6037 0.706433 ATTTGTGATCTGGTGGGGCT 59.294 50.000 0.00 0.00 0.00 5.19
2556 6092 9.412460 ACTATTTGGAATGCAGATGATCTTTTA 57.588 29.630 0.00 0.00 0.00 1.52
2560 6098 8.985315 TTTACTATTTGGAATGCAGATGATCT 57.015 30.769 0.00 0.00 0.00 2.75
2595 6138 5.482006 TGGATCTGTCAAGTGTACAATCAG 58.518 41.667 0.00 0.19 0.00 2.90
2598 6141 7.581213 TTTTTGGATCTGTCAAGTGTACAAT 57.419 32.000 0.00 0.00 0.00 2.71
2607 6150 7.949690 ATCAGATGATTTTTGGATCTGTCAA 57.050 32.000 0.00 0.00 42.48 3.18
2609 6152 7.993101 TGAATCAGATGATTTTTGGATCTGTC 58.007 34.615 9.33 0.00 44.14 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.