Multiple sequence alignment - TraesCS7B01G061500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G061500 chr7B 100.000 6220 0 0 945 7164 64036866 64030647 0.000000e+00 11487.0
1 TraesCS7B01G061500 chr7B 100.000 558 0 0 1 558 64037810 64037253 0.000000e+00 1031.0
2 TraesCS7B01G061500 chr7B 92.353 170 12 1 1 169 64040362 64040531 2.580000e-59 241.0
3 TraesCS7B01G061500 chr7B 76.200 479 47 36 2757 3170 218820252 218819776 2.640000e-44 191.0
4 TraesCS7B01G061500 chr7B 100.000 29 0 0 3778 3806 249675036 249675064 4.000000e-03 54.7
5 TraesCS7B01G061500 chr7D 92.345 3736 166 48 965 4626 105434444 105430755 0.000000e+00 5204.0
6 TraesCS7B01G061500 chr7D 87.660 2585 151 72 4658 7164 105430757 105428263 0.000000e+00 2852.0
7 TraesCS7B01G061500 chr7D 92.413 1173 46 10 6030 7164 105418214 105417047 0.000000e+00 1633.0
8 TraesCS7B01G061500 chr7D 76.531 490 48 37 2765 3189 243335249 243334762 9.420000e-49 206.0
9 TraesCS7B01G061500 chr7D 87.861 173 5 3 386 558 105434931 105434775 9.490000e-44 189.0
10 TraesCS7B01G061500 chr7D 85.795 176 18 4 5749 5917 105419012 105418837 5.710000e-41 180.0
11 TraesCS7B01G061500 chr7D 90.226 133 11 2 257 388 105435115 105434984 9.550000e-39 172.0
12 TraesCS7B01G061500 chr7D 96.000 75 3 0 170 244 194280860 194280786 9.760000e-24 122.0
13 TraesCS7B01G061500 chr7A 93.792 2674 97 24 4191 6833 110254664 110252029 0.000000e+00 3954.0
14 TraesCS7B01G061500 chr7A 94.766 2006 79 16 2196 4182 110256949 110254951 0.000000e+00 3099.0
15 TraesCS7B01G061500 chr7A 89.332 1153 75 21 965 2111 110258066 110256956 0.000000e+00 1404.0
16 TraesCS7B01G061500 chr7A 94.895 333 15 2 5997 6328 110243201 110242870 2.960000e-143 520.0
17 TraesCS7B01G061500 chr7A 80.371 377 29 13 6827 7163 110222544 110222173 2.000000e-60 244.0
18 TraesCS7B01G061500 chr7A 91.813 171 13 1 1 170 635498078 635497908 3.340000e-58 237.0
19 TraesCS7B01G061500 chr7A 87.845 181 9 5 386 558 110258382 110258207 4.380000e-47 200.0
20 TraesCS7B01G061500 chr7A 92.806 139 7 3 7027 7164 110252023 110251887 1.580000e-46 198.0
21 TraesCS7B01G061500 chr7A 75.941 478 50 31 2757 3170 258415203 258414727 1.230000e-42 185.0
22 TraesCS7B01G061500 chr7A 90.580 138 6 4 257 388 110258572 110258436 7.390000e-40 176.0
23 TraesCS7B01G061500 chr7A 86.310 168 12 2 6340 6507 110238155 110237999 9.550000e-39 172.0
24 TraesCS7B01G061500 chr7A 85.714 168 13 2 6340 6507 110226383 110226227 4.450000e-37 167.0
25 TraesCS7B01G061500 chr7A 85.827 127 12 2 6590 6710 110236711 110236585 5.830000e-26 130.0
26 TraesCS7B01G061500 chr7A 85.039 127 13 2 6590 6710 110224799 110224673 2.710000e-24 124.0
27 TraesCS7B01G061500 chr7A 84.553 123 13 3 5316 5435 10208716 10208835 4.540000e-22 117.0
28 TraesCS7B01G061500 chr7A 92.000 75 6 0 170 244 708099762 708099836 9.830000e-19 106.0
29 TraesCS7B01G061500 chr7A 89.706 68 7 0 6762 6829 110223799 110223732 3.560000e-13 87.9
30 TraesCS7B01G061500 chr5A 78.897 834 129 25 4668 5467 684633936 684633116 8.240000e-144 521.0
31 TraesCS7B01G061500 chr3A 78.511 833 133 27 4668 5467 210328311 210327492 8.290000e-139 505.0
32 TraesCS7B01G061500 chr3A 93.220 59 2 2 2961 3019 441006568 441006512 1.280000e-12 86.1
33 TraesCS7B01G061500 chr1A 78.537 834 132 25 4668 5467 285417231 285416411 8.290000e-139 505.0
34 TraesCS7B01G061500 chr1A 78.058 834 135 26 4668 5467 404506581 404505762 3.890000e-132 483.0
35 TraesCS7B01G061500 chr1A 78.626 131 24 4 2800 2928 134960959 134961087 4.610000e-12 84.2
36 TraesCS7B01G061500 chr1A 81.176 85 12 2 2917 2997 288511951 288511867 1.670000e-06 65.8
37 TraesCS7B01G061500 chr6D 73.964 772 136 47 4252 4992 94771121 94770384 1.190000e-62 252.0
38 TraesCS7B01G061500 chr6D 82.270 141 23 2 5313 5452 387647181 387647320 3.510000e-23 121.0
39 TraesCS7B01G061500 chr6B 93.529 170 10 1 1 169 507371847 507371678 1.190000e-62 252.0
40 TraesCS7B01G061500 chr6B 91.954 174 11 3 1 172 507373667 507373839 2.580000e-59 241.0
41 TraesCS7B01G061500 chr6B 94.667 75 4 0 170 244 68678018 68677944 4.540000e-22 117.0
42 TraesCS7B01G061500 chr4D 92.941 170 11 1 1 169 455257965 455257796 5.550000e-61 246.0
43 TraesCS7B01G061500 chr4D 90.789 76 7 0 2776 2851 385739937 385740012 1.270000e-17 102.0
44 TraesCS7B01G061500 chr4D 82.203 118 14 7 2579 2691 69251468 69251353 2.130000e-15 95.3
45 TraesCS7B01G061500 chr2D 92.941 170 11 1 1 169 81514957 81514788 5.550000e-61 246.0
46 TraesCS7B01G061500 chr2D 91.908 173 13 1 1 172 81516790 81516962 2.580000e-59 241.0
47 TraesCS7B01G061500 chr2D 92.353 170 12 1 1 169 634585705 634585536 2.580000e-59 241.0
48 TraesCS7B01G061500 chr2D 83.099 142 22 2 5316 5456 47718757 47718617 2.100000e-25 128.0
49 TraesCS7B01G061500 chr2D 92.727 55 1 3 4952 5005 648385490 648385542 7.710000e-10 76.8
50 TraesCS7B01G061500 chr2B 91.860 172 13 1 1 171 267902568 267902739 9.290000e-59 239.0
51 TraesCS7B01G061500 chr2B 87.640 89 8 3 2606 2691 364848578 364848490 4.570000e-17 100.0
52 TraesCS7B01G061500 chr2B 82.540 126 7 11 2768 2885 423907120 423907002 5.920000e-16 97.1
53 TraesCS7B01G061500 chr2B 96.078 51 2 0 1896 1946 500735506 500735456 4.610000e-12 84.2
54 TraesCS7B01G061500 chr6A 82.099 162 26 3 5313 5472 532655546 532655706 1.250000e-27 135.0
55 TraesCS7B01G061500 chr6A 87.640 89 8 3 2606 2691 32531658 32531570 4.570000e-17 100.0
56 TraesCS7B01G061500 chr6A 93.220 59 2 2 2961 3019 25759246 25759302 1.280000e-12 86.1
57 TraesCS7B01G061500 chr3D 86.777 121 11 3 3986 4101 288685234 288685114 5.830000e-26 130.0
58 TraesCS7B01G061500 chr3D 79.710 138 25 3 2597 2733 509054900 509055035 5.920000e-16 97.1
59 TraesCS7B01G061500 chr3D 96.154 52 2 0 2970 3021 254111789 254111840 1.280000e-12 86.1
60 TraesCS7B01G061500 chr5D 94.667 75 4 0 170 244 58519171 58519097 4.540000e-22 117.0
61 TraesCS7B01G061500 chr5D 83.036 112 15 3 2578 2685 457674174 457674285 1.640000e-16 99.0
62 TraesCS7B01G061500 chr5B 94.667 75 4 0 170 244 704094684 704094610 4.540000e-22 117.0
63 TraesCS7B01G061500 chr4A 92.105 76 6 0 2776 2851 67175514 67175589 2.730000e-19 108.0
64 TraesCS7B01G061500 chr3B 86.735 98 10 3 2591 2685 570443603 570443700 9.830000e-19 106.0
65 TraesCS7B01G061500 chr3B 83.673 98 16 0 5350 5447 778368818 778368721 7.650000e-15 93.5
66 TraesCS7B01G061500 chr4B 91.892 74 6 0 2778 2851 472393168 472393241 3.540000e-18 104.0
67 TraesCS7B01G061500 chr4B 80.282 142 16 7 2555 2685 188184062 188184202 5.920000e-16 97.1
68 TraesCS7B01G061500 chr1B 82.178 101 18 0 5347 5447 37835105 37835205 3.560000e-13 87.9
69 TraesCS7B01G061500 chr1B 77.273 132 24 5 2800 2928 187206137 187206009 9.970000e-09 73.1
70 TraesCS7B01G061500 chr1B 100.000 28 0 0 2851 2878 321876804 321876777 1.300000e-02 52.8
71 TraesCS7B01G061500 chr2A 93.220 59 3 1 2961 3019 467026613 467026556 1.280000e-12 86.1
72 TraesCS7B01G061500 chr1D 100.000 28 0 0 2851 2878 222338323 222338296 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G061500 chr7B 64030647 64037810 7163 True 6259.000000 11487 100.000000 1 7164 2 chr7B.!!$R2 7163
1 TraesCS7B01G061500 chr7D 105428263 105435115 6852 True 2104.250000 5204 89.523000 257 7164 4 chr7D.!!$R4 6907
2 TraesCS7B01G061500 chr7D 105417047 105419012 1965 True 906.500000 1633 89.104000 5749 7164 2 chr7D.!!$R3 1415
3 TraesCS7B01G061500 chr7A 110251887 110258572 6685 True 1505.166667 3954 91.520167 257 7164 6 chr7A.!!$R6 6907
4 TraesCS7B01G061500 chr5A 684633116 684633936 820 True 521.000000 521 78.897000 4668 5467 1 chr5A.!!$R1 799
5 TraesCS7B01G061500 chr3A 210327492 210328311 819 True 505.000000 505 78.511000 4668 5467 1 chr3A.!!$R1 799
6 TraesCS7B01G061500 chr1A 285416411 285417231 820 True 505.000000 505 78.537000 4668 5467 1 chr1A.!!$R1 799
7 TraesCS7B01G061500 chr1A 404505762 404506581 819 True 483.000000 483 78.058000 4668 5467 1 chr1A.!!$R3 799
8 TraesCS7B01G061500 chr6D 94770384 94771121 737 True 252.000000 252 73.964000 4252 4992 1 chr6D.!!$R1 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 186 0.030638 CTCTTTTGCGTTGGGTGGTG 59.969 55.000 0.00 0.00 0.00 4.17 F
195 196 0.180642 TTGGGTGGTGCGTAGTTGAA 59.819 50.000 0.00 0.00 0.00 2.69 F
196 197 0.250124 TGGGTGGTGCGTAGTTGAAG 60.250 55.000 0.00 0.00 0.00 3.02 F
2032 2143 0.033504 GTGTCACACGAGTGGTCCAT 59.966 55.000 13.14 0.00 45.91 3.41 F
2641 2765 0.179056 AACAGCCATTCGGGGATACG 60.179 55.000 0.00 0.00 37.04 3.06 F
3492 3616 0.037303 TCTTTCCCAGCTTGCCTCTG 59.963 55.000 0.00 0.00 0.00 3.35 F
3597 3729 0.249868 TAGCGCCTCATGCATGGTAC 60.250 55.000 25.97 14.06 41.33 3.34 F
3640 3772 0.538057 TGTTTTCTCCCAGCCTGCAG 60.538 55.000 6.78 6.78 0.00 4.41 F
4157 4290 2.753452 TGGTTGTGCCTTTTTAACGACA 59.247 40.909 0.00 0.00 38.35 4.35 F
4844 5322 3.329386 ACAAGTGATCCGTCATTGTCAG 58.671 45.455 0.00 0.00 34.20 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1619 1712 0.036388 AACAGGTGGCCATAGACACG 60.036 55.000 9.72 0.00 38.46 4.49 R
2007 2118 0.389391 CACTCGTGTGACACTTCCCT 59.611 55.000 14.42 0.00 46.55 4.20 R
2118 2229 0.682209 GATGGGCCATGAAGCAGTGT 60.682 55.000 26.77 0.00 0.00 3.55 R
3451 3575 0.036164 TTTCTGGCGCTAGCTTTCCA 59.964 50.000 17.00 15.27 44.37 3.53 R
3509 3633 0.187117 TTCCATGGTGGGCAAAGACA 59.813 50.000 12.58 0.00 38.32 3.41 R
4729 5176 3.375782 AGCAAACCAGAAAAGCATCAC 57.624 42.857 0.00 0.00 0.00 3.06 R
5322 5822 5.359292 AGAAGGCAAGAAGCTGGAAATAATC 59.641 40.000 0.00 0.00 44.79 1.75 R
5567 6080 5.491070 AGCATATTTACTGAACAGTGAGCA 58.509 37.500 16.37 2.22 42.52 4.26 R
5650 6163 2.097036 CTGAGCTCATTGCATTTGGGA 58.903 47.619 18.63 0.00 45.94 4.37 R
6493 7557 1.000827 CCATTGTTTAGCGCCAACACA 60.001 47.619 19.51 8.50 33.81 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.916358 AGCTTTGCTGACTTGGCT 57.084 50.000 0.00 0.00 37.57 4.75
30 31 2.638744 AGCTTTGCTGACTTGGCTC 58.361 52.632 0.00 0.00 37.57 4.70
31 32 0.892814 AGCTTTGCTGACTTGGCTCC 60.893 55.000 0.00 0.00 37.57 4.70
32 33 1.174712 GCTTTGCTGACTTGGCTCCA 61.175 55.000 0.00 0.00 0.00 3.86
33 34 0.595095 CTTTGCTGACTTGGCTCCAC 59.405 55.000 0.00 0.00 0.00 4.02
34 35 0.183492 TTTGCTGACTTGGCTCCACT 59.817 50.000 0.00 0.00 0.00 4.00
35 36 0.183492 TTGCTGACTTGGCTCCACTT 59.817 50.000 0.00 0.00 0.00 3.16
36 37 0.535780 TGCTGACTTGGCTCCACTTG 60.536 55.000 0.00 0.00 0.00 3.16
37 38 0.536006 GCTGACTTGGCTCCACTTGT 60.536 55.000 0.00 0.00 0.00 3.16
38 39 1.517242 CTGACTTGGCTCCACTTGTC 58.483 55.000 8.16 8.16 0.00 3.18
39 40 0.249868 TGACTTGGCTCCACTTGTCG 60.250 55.000 9.63 0.00 0.00 4.35
40 41 0.249911 GACTTGGCTCCACTTGTCGT 60.250 55.000 0.00 0.00 0.00 4.34
41 42 0.249911 ACTTGGCTCCACTTGTCGTC 60.250 55.000 0.00 0.00 0.00 4.20
42 43 0.951040 CTTGGCTCCACTTGTCGTCC 60.951 60.000 0.00 0.00 0.00 4.79
43 44 1.407656 TTGGCTCCACTTGTCGTCCT 61.408 55.000 0.00 0.00 0.00 3.85
44 45 1.079750 GGCTCCACTTGTCGTCCTC 60.080 63.158 0.00 0.00 0.00 3.71
45 46 1.536943 GGCTCCACTTGTCGTCCTCT 61.537 60.000 0.00 0.00 0.00 3.69
46 47 0.389166 GCTCCACTTGTCGTCCTCTG 60.389 60.000 0.00 0.00 0.00 3.35
47 48 1.248486 CTCCACTTGTCGTCCTCTGA 58.752 55.000 0.00 0.00 0.00 3.27
48 49 1.821753 CTCCACTTGTCGTCCTCTGAT 59.178 52.381 0.00 0.00 0.00 2.90
49 50 2.232452 CTCCACTTGTCGTCCTCTGATT 59.768 50.000 0.00 0.00 0.00 2.57
50 51 2.029020 TCCACTTGTCGTCCTCTGATTG 60.029 50.000 0.00 0.00 0.00 2.67
51 52 1.728971 CACTTGTCGTCCTCTGATTGC 59.271 52.381 0.00 0.00 0.00 3.56
52 53 1.620819 ACTTGTCGTCCTCTGATTGCT 59.379 47.619 0.00 0.00 0.00 3.91
53 54 2.826128 ACTTGTCGTCCTCTGATTGCTA 59.174 45.455 0.00 0.00 0.00 3.49
54 55 3.119316 ACTTGTCGTCCTCTGATTGCTAG 60.119 47.826 0.00 0.00 0.00 3.42
55 56 1.751351 TGTCGTCCTCTGATTGCTAGG 59.249 52.381 0.00 0.00 0.00 3.02
56 57 2.025155 GTCGTCCTCTGATTGCTAGGA 58.975 52.381 0.00 0.00 37.07 2.94
63 64 6.412362 TCCTCTGATTGCTAGGACTAAATC 57.588 41.667 0.00 0.00 34.46 2.17
64 65 6.139671 TCCTCTGATTGCTAGGACTAAATCT 58.860 40.000 0.00 0.00 34.46 2.40
65 66 6.041409 TCCTCTGATTGCTAGGACTAAATCTG 59.959 42.308 0.00 0.00 34.46 2.90
66 67 5.605534 TCTGATTGCTAGGACTAAATCTGC 58.394 41.667 0.00 0.00 31.67 4.26
67 68 5.129320 TCTGATTGCTAGGACTAAATCTGCA 59.871 40.000 0.00 0.00 31.67 4.41
68 69 5.118990 TGATTGCTAGGACTAAATCTGCAC 58.881 41.667 0.00 0.00 31.44 4.57
69 70 4.551702 TTGCTAGGACTAAATCTGCACA 57.448 40.909 0.00 0.00 31.44 4.57
70 71 4.760530 TGCTAGGACTAAATCTGCACAT 57.239 40.909 0.00 0.00 0.00 3.21
71 72 5.102953 TGCTAGGACTAAATCTGCACATT 57.897 39.130 0.00 0.00 0.00 2.71
72 73 4.877823 TGCTAGGACTAAATCTGCACATTG 59.122 41.667 0.00 0.00 0.00 2.82
73 74 4.274459 GCTAGGACTAAATCTGCACATTGG 59.726 45.833 0.00 0.00 0.00 3.16
74 75 3.624777 AGGACTAAATCTGCACATTGGG 58.375 45.455 0.00 0.00 0.00 4.12
75 76 3.010584 AGGACTAAATCTGCACATTGGGT 59.989 43.478 0.00 0.00 0.00 4.51
85 86 1.855513 CACATTGGGTGCAAGTTGTG 58.144 50.000 4.48 0.00 41.36 3.33
86 87 0.752054 ACATTGGGTGCAAGTTGTGG 59.248 50.000 4.48 0.00 0.00 4.17
87 88 0.033781 CATTGGGTGCAAGTTGTGGG 59.966 55.000 4.48 0.00 0.00 4.61
88 89 0.105760 ATTGGGTGCAAGTTGTGGGA 60.106 50.000 4.48 0.00 0.00 4.37
89 90 0.105760 TTGGGTGCAAGTTGTGGGAT 60.106 50.000 4.48 0.00 0.00 3.85
90 91 0.827089 TGGGTGCAAGTTGTGGGATG 60.827 55.000 4.48 0.00 0.00 3.51
91 92 1.290009 GGTGCAAGTTGTGGGATGC 59.710 57.895 4.48 0.00 39.22 3.91
92 93 1.462731 GGTGCAAGTTGTGGGATGCA 61.463 55.000 4.48 0.00 45.75 3.96
93 94 2.818111 TGCAAGTTGTGGGATGCAA 58.182 47.368 4.48 0.00 45.04 4.08
94 95 1.340088 TGCAAGTTGTGGGATGCAAT 58.660 45.000 4.48 0.00 45.04 3.56
95 96 2.523245 TGCAAGTTGTGGGATGCAATA 58.477 42.857 4.48 0.00 45.04 1.90
96 97 2.492881 TGCAAGTTGTGGGATGCAATAG 59.507 45.455 4.48 0.00 45.04 1.73
97 98 2.493278 GCAAGTTGTGGGATGCAATAGT 59.507 45.455 4.48 0.00 38.63 2.12
98 99 3.056607 GCAAGTTGTGGGATGCAATAGTT 60.057 43.478 4.48 0.00 38.63 2.24
99 100 4.561326 GCAAGTTGTGGGATGCAATAGTTT 60.561 41.667 4.48 0.00 38.63 2.66
100 101 4.789012 AGTTGTGGGATGCAATAGTTTG 57.211 40.909 0.00 0.00 35.85 2.93
101 102 4.151883 AGTTGTGGGATGCAATAGTTTGT 58.848 39.130 0.00 0.00 35.17 2.83
102 103 4.588528 AGTTGTGGGATGCAATAGTTTGTT 59.411 37.500 0.00 0.00 35.17 2.83
103 104 5.070313 AGTTGTGGGATGCAATAGTTTGTTT 59.930 36.000 0.00 0.00 35.17 2.83
104 105 5.543507 TGTGGGATGCAATAGTTTGTTTT 57.456 34.783 0.00 0.00 35.17 2.43
105 106 5.923204 TGTGGGATGCAATAGTTTGTTTTT 58.077 33.333 0.00 0.00 35.17 1.94
106 107 5.757320 TGTGGGATGCAATAGTTTGTTTTTG 59.243 36.000 0.00 0.00 35.17 2.44
107 108 4.754114 TGGGATGCAATAGTTTGTTTTTGC 59.246 37.500 0.00 0.00 43.60 3.68
115 116 7.873586 GCAATAGTTTGTTTTTGCAAGTTTTG 58.126 30.769 0.00 0.00 43.00 2.44
116 117 7.008176 GCAATAGTTTGTTTTTGCAAGTTTTGG 59.992 33.333 0.00 0.00 43.00 3.28
117 118 7.913674 ATAGTTTGTTTTTGCAAGTTTTGGA 57.086 28.000 0.00 0.00 0.00 3.53
118 119 5.996219 AGTTTGTTTTTGCAAGTTTTGGAC 58.004 33.333 0.00 0.00 0.00 4.02
119 120 5.762711 AGTTTGTTTTTGCAAGTTTTGGACT 59.237 32.000 0.00 0.00 41.47 3.85
120 121 6.931840 AGTTTGTTTTTGCAAGTTTTGGACTA 59.068 30.769 0.00 0.00 37.72 2.59
121 122 6.959671 TTGTTTTTGCAAGTTTTGGACTAG 57.040 33.333 0.00 0.00 37.72 2.57
122 123 6.274157 TGTTTTTGCAAGTTTTGGACTAGA 57.726 33.333 0.00 0.00 37.72 2.43
123 124 6.872920 TGTTTTTGCAAGTTTTGGACTAGAT 58.127 32.000 0.00 0.00 37.72 1.98
124 125 6.978080 TGTTTTTGCAAGTTTTGGACTAGATC 59.022 34.615 0.00 0.00 37.72 2.75
125 126 6.707440 TTTTGCAAGTTTTGGACTAGATCA 57.293 33.333 0.00 0.00 37.72 2.92
126 127 6.899393 TTTGCAAGTTTTGGACTAGATCAT 57.101 33.333 0.00 0.00 37.72 2.45
127 128 6.500684 TTGCAAGTTTTGGACTAGATCATC 57.499 37.500 0.00 0.00 37.72 2.92
128 129 5.559770 TGCAAGTTTTGGACTAGATCATCA 58.440 37.500 0.00 0.00 37.72 3.07
129 130 5.412594 TGCAAGTTTTGGACTAGATCATCAC 59.587 40.000 0.00 0.00 37.72 3.06
130 131 5.412594 GCAAGTTTTGGACTAGATCATCACA 59.587 40.000 0.00 0.00 37.72 3.58
131 132 6.094603 GCAAGTTTTGGACTAGATCATCACAT 59.905 38.462 0.00 0.00 37.72 3.21
132 133 7.362401 GCAAGTTTTGGACTAGATCATCACATT 60.362 37.037 0.00 0.00 37.72 2.71
133 134 7.856145 AGTTTTGGACTAGATCATCACATTC 57.144 36.000 0.00 0.00 36.65 2.67
134 135 6.825721 AGTTTTGGACTAGATCATCACATTCC 59.174 38.462 0.00 0.00 36.65 3.01
135 136 4.590850 TGGACTAGATCATCACATTCCG 57.409 45.455 0.00 0.00 0.00 4.30
136 137 3.321968 TGGACTAGATCATCACATTCCGG 59.678 47.826 0.00 0.00 0.00 5.14
137 138 3.574396 GGACTAGATCATCACATTCCGGA 59.426 47.826 0.00 0.00 0.00 5.14
138 139 4.551388 GACTAGATCATCACATTCCGGAC 58.449 47.826 1.83 0.00 0.00 4.79
139 140 3.960755 ACTAGATCATCACATTCCGGACA 59.039 43.478 1.83 0.00 0.00 4.02
140 141 3.912496 AGATCATCACATTCCGGACAA 57.088 42.857 1.83 0.00 0.00 3.18
141 142 3.801698 AGATCATCACATTCCGGACAAG 58.198 45.455 1.83 0.00 0.00 3.16
142 143 3.198635 AGATCATCACATTCCGGACAAGT 59.801 43.478 1.83 0.00 0.00 3.16
143 144 3.417069 TCATCACATTCCGGACAAGTT 57.583 42.857 1.83 0.00 0.00 2.66
144 145 3.334691 TCATCACATTCCGGACAAGTTC 58.665 45.455 1.83 0.00 0.00 3.01
145 146 2.920724 TCACATTCCGGACAAGTTCA 57.079 45.000 1.83 0.00 0.00 3.18
146 147 3.201353 TCACATTCCGGACAAGTTCAA 57.799 42.857 1.83 0.00 0.00 2.69
147 148 3.546724 TCACATTCCGGACAAGTTCAAA 58.453 40.909 1.83 0.00 0.00 2.69
148 149 3.563808 TCACATTCCGGACAAGTTCAAAG 59.436 43.478 1.83 0.00 0.00 2.77
149 150 3.563808 CACATTCCGGACAAGTTCAAAGA 59.436 43.478 1.83 0.00 0.00 2.52
150 151 3.564225 ACATTCCGGACAAGTTCAAAGAC 59.436 43.478 1.83 0.00 0.00 3.01
151 152 3.553828 TTCCGGACAAGTTCAAAGACT 57.446 42.857 1.83 0.00 0.00 3.24
152 153 2.833794 TCCGGACAAGTTCAAAGACTG 58.166 47.619 0.00 0.00 0.00 3.51
153 154 1.264288 CCGGACAAGTTCAAAGACTGC 59.736 52.381 0.00 0.00 0.00 4.40
154 155 2.213499 CGGACAAGTTCAAAGACTGCT 58.787 47.619 0.00 0.00 0.00 4.24
155 156 2.032549 CGGACAAGTTCAAAGACTGCTG 60.033 50.000 0.00 0.00 0.00 4.41
156 157 2.291741 GGACAAGTTCAAAGACTGCTGG 59.708 50.000 0.00 0.00 0.00 4.85
157 158 2.945668 GACAAGTTCAAAGACTGCTGGT 59.054 45.455 0.00 0.00 0.00 4.00
158 159 2.684881 ACAAGTTCAAAGACTGCTGGTG 59.315 45.455 0.00 0.00 0.00 4.17
159 160 1.312815 AGTTCAAAGACTGCTGGTGC 58.687 50.000 0.00 0.00 40.20 5.01
160 161 1.133976 AGTTCAAAGACTGCTGGTGCT 60.134 47.619 0.00 0.00 40.48 4.40
161 162 2.104792 AGTTCAAAGACTGCTGGTGCTA 59.895 45.455 0.00 0.00 40.48 3.49
162 163 3.077359 GTTCAAAGACTGCTGGTGCTAT 58.923 45.455 0.00 0.00 40.48 2.97
163 164 3.423539 TCAAAGACTGCTGGTGCTATT 57.576 42.857 0.00 0.00 40.48 1.73
164 165 4.551702 TCAAAGACTGCTGGTGCTATTA 57.448 40.909 0.00 0.00 40.48 0.98
165 166 4.253685 TCAAAGACTGCTGGTGCTATTAC 58.746 43.478 0.00 0.00 40.48 1.89
166 167 2.990066 AGACTGCTGGTGCTATTACC 57.010 50.000 0.00 0.00 41.24 2.85
167 168 2.472029 AGACTGCTGGTGCTATTACCT 58.528 47.619 0.00 0.00 41.43 3.08
168 169 2.432510 AGACTGCTGGTGCTATTACCTC 59.567 50.000 0.00 0.00 41.43 3.85
169 170 2.432510 GACTGCTGGTGCTATTACCTCT 59.567 50.000 0.00 0.00 41.43 3.69
170 171 2.840651 ACTGCTGGTGCTATTACCTCTT 59.159 45.455 0.00 0.00 41.43 2.85
171 172 3.264450 ACTGCTGGTGCTATTACCTCTTT 59.736 43.478 0.00 0.00 41.43 2.52
172 173 4.263506 ACTGCTGGTGCTATTACCTCTTTT 60.264 41.667 0.00 0.00 41.43 2.27
173 174 4.009675 TGCTGGTGCTATTACCTCTTTTG 58.990 43.478 0.00 0.00 41.43 2.44
174 175 3.181496 GCTGGTGCTATTACCTCTTTTGC 60.181 47.826 0.00 0.00 41.43 3.68
175 176 3.006940 TGGTGCTATTACCTCTTTTGCG 58.993 45.455 0.00 0.00 41.43 4.85
176 177 3.007635 GGTGCTATTACCTCTTTTGCGT 58.992 45.455 0.00 0.00 37.74 5.24
177 178 3.439129 GGTGCTATTACCTCTTTTGCGTT 59.561 43.478 0.00 0.00 37.74 4.84
178 179 4.403453 GTGCTATTACCTCTTTTGCGTTG 58.597 43.478 0.00 0.00 0.00 4.10
179 180 3.438781 TGCTATTACCTCTTTTGCGTTGG 59.561 43.478 0.00 0.00 0.00 3.77
180 181 3.181500 GCTATTACCTCTTTTGCGTTGGG 60.181 47.826 0.00 0.00 0.00 4.12
181 182 2.351706 TTACCTCTTTTGCGTTGGGT 57.648 45.000 0.00 0.00 0.00 4.51
182 183 1.600023 TACCTCTTTTGCGTTGGGTG 58.400 50.000 0.00 0.00 0.00 4.61
183 184 1.106944 ACCTCTTTTGCGTTGGGTGG 61.107 55.000 0.00 0.00 0.00 4.61
184 185 1.106944 CCTCTTTTGCGTTGGGTGGT 61.107 55.000 0.00 0.00 0.00 4.16
185 186 0.030638 CTCTTTTGCGTTGGGTGGTG 59.969 55.000 0.00 0.00 0.00 4.17
186 187 1.591327 CTTTTGCGTTGGGTGGTGC 60.591 57.895 0.00 0.00 0.00 5.01
187 188 3.417275 TTTTGCGTTGGGTGGTGCG 62.417 57.895 0.00 0.00 0.00 5.34
189 190 3.752088 TTGCGTTGGGTGGTGCGTA 62.752 57.895 0.00 0.00 0.00 4.42
190 191 3.419759 GCGTTGGGTGGTGCGTAG 61.420 66.667 0.00 0.00 0.00 3.51
191 192 2.029964 CGTTGGGTGGTGCGTAGT 59.970 61.111 0.00 0.00 0.00 2.73
192 193 1.595929 CGTTGGGTGGTGCGTAGTT 60.596 57.895 0.00 0.00 0.00 2.24
193 194 1.837538 CGTTGGGTGGTGCGTAGTTG 61.838 60.000 0.00 0.00 0.00 3.16
194 195 0.533308 GTTGGGTGGTGCGTAGTTGA 60.533 55.000 0.00 0.00 0.00 3.18
195 196 0.180642 TTGGGTGGTGCGTAGTTGAA 59.819 50.000 0.00 0.00 0.00 2.69
196 197 0.250124 TGGGTGGTGCGTAGTTGAAG 60.250 55.000 0.00 0.00 0.00 3.02
197 198 1.574702 GGGTGGTGCGTAGTTGAAGC 61.575 60.000 0.00 0.00 0.00 3.86
198 199 1.491563 GTGGTGCGTAGTTGAAGCG 59.508 57.895 0.00 0.00 34.91 4.68
199 200 1.666553 TGGTGCGTAGTTGAAGCGG 60.667 57.895 0.00 0.00 34.91 5.52
200 201 1.666872 GGTGCGTAGTTGAAGCGGT 60.667 57.895 0.00 0.00 34.91 5.68
201 202 1.491563 GTGCGTAGTTGAAGCGGTG 59.508 57.895 0.00 0.00 34.91 4.94
202 203 1.666553 TGCGTAGTTGAAGCGGTGG 60.667 57.895 0.00 0.00 34.91 4.61
203 204 1.666872 GCGTAGTTGAAGCGGTGGT 60.667 57.895 0.00 0.00 0.00 4.16
204 205 1.226030 GCGTAGTTGAAGCGGTGGTT 61.226 55.000 0.00 0.00 0.00 3.67
205 206 1.223187 CGTAGTTGAAGCGGTGGTTT 58.777 50.000 0.00 0.00 0.00 3.27
206 207 1.070175 CGTAGTTGAAGCGGTGGTTTG 60.070 52.381 0.00 0.00 0.00 2.93
207 208 2.215196 GTAGTTGAAGCGGTGGTTTGA 58.785 47.619 0.00 0.00 0.00 2.69
208 209 1.757682 AGTTGAAGCGGTGGTTTGAA 58.242 45.000 0.00 0.00 0.00 2.69
209 210 1.404035 AGTTGAAGCGGTGGTTTGAAC 59.596 47.619 0.00 0.00 0.00 3.18
210 211 1.133407 GTTGAAGCGGTGGTTTGAACA 59.867 47.619 0.00 0.00 0.00 3.18
211 212 0.736053 TGAAGCGGTGGTTTGAACAC 59.264 50.000 0.00 0.00 38.10 3.32
220 221 3.902881 TGGTTTGAACACCATTTGCTT 57.097 38.095 0.00 0.00 42.27 3.91
222 223 4.688021 TGGTTTGAACACCATTTGCTTAC 58.312 39.130 0.00 0.00 42.27 2.34
223 224 4.160439 TGGTTTGAACACCATTTGCTTACA 59.840 37.500 0.00 0.00 42.27 2.41
224 225 5.163364 TGGTTTGAACACCATTTGCTTACAT 60.163 36.000 0.00 0.00 42.27 2.29
225 226 5.177327 GGTTTGAACACCATTTGCTTACATG 59.823 40.000 0.00 0.00 36.73 3.21
226 227 5.781210 TTGAACACCATTTGCTTACATGA 57.219 34.783 0.00 0.00 0.00 3.07
227 228 5.781210 TGAACACCATTTGCTTACATGAA 57.219 34.783 0.00 0.00 0.00 2.57
228 229 6.343716 TGAACACCATTTGCTTACATGAAT 57.656 33.333 0.00 0.00 0.00 2.57
229 230 6.757237 TGAACACCATTTGCTTACATGAATT 58.243 32.000 0.00 0.00 0.00 2.17
230 231 6.645827 TGAACACCATTTGCTTACATGAATTG 59.354 34.615 0.00 0.00 0.00 2.32
231 232 4.931002 ACACCATTTGCTTACATGAATTGC 59.069 37.500 0.00 0.00 0.00 3.56
232 233 5.172934 CACCATTTGCTTACATGAATTGCT 58.827 37.500 0.00 0.00 0.00 3.91
233 234 5.062934 CACCATTTGCTTACATGAATTGCTG 59.937 40.000 0.00 0.00 0.00 4.41
234 235 4.569162 CCATTTGCTTACATGAATTGCTGG 59.431 41.667 0.00 0.00 0.00 4.85
235 236 3.872511 TTGCTTACATGAATTGCTGGG 57.127 42.857 0.00 0.00 0.00 4.45
236 237 2.101783 TGCTTACATGAATTGCTGGGG 58.898 47.619 0.00 0.00 0.00 4.96
237 238 1.202452 GCTTACATGAATTGCTGGGGC 60.202 52.381 0.00 0.00 39.26 5.80
319 320 1.134521 AGCAAAGTCTGTGACGACCAA 60.135 47.619 0.00 0.00 37.67 3.67
320 321 1.261619 GCAAAGTCTGTGACGACCAAG 59.738 52.381 0.00 0.00 37.67 3.61
331 332 2.280797 GACCAAGGTGACGCAGCA 60.281 61.111 0.00 0.00 33.95 4.41
345 351 1.300963 CAGCAGCACAGGGGTACAT 59.699 57.895 0.00 0.00 0.00 2.29
417 479 3.923017 AATTCCGAAAAAGCTGACAGG 57.077 42.857 4.26 0.00 0.00 4.00
1207 1299 2.435586 CTCTGCAAGGTGAGCCCG 60.436 66.667 0.00 0.00 38.74 6.13
1237 1329 0.657840 GCCTCGATTGGGTTCGATTG 59.342 55.000 0.00 0.00 46.16 2.67
1238 1330 1.299541 CCTCGATTGGGTTCGATTGG 58.700 55.000 0.00 0.00 46.16 3.16
1239 1331 1.299541 CTCGATTGGGTTCGATTGGG 58.700 55.000 0.00 0.00 46.16 4.12
1381 1473 1.204941 AGTGGCGTAAGTAGCTTCCAG 59.795 52.381 0.00 0.00 41.68 3.86
1383 1475 1.067142 TGGCGTAAGTAGCTTCCAGTG 60.067 52.381 0.00 0.00 41.68 3.66
1394 1486 0.524816 CTTCCAGTGATTGCGCATGC 60.525 55.000 12.75 7.91 43.20 4.06
1406 1498 2.497107 GCGCATGCATATTCACCTTT 57.503 45.000 19.57 0.00 42.15 3.11
1407 1499 2.121786 GCGCATGCATATTCACCTTTG 58.878 47.619 19.57 0.00 42.15 2.77
1411 1503 5.339177 CGCATGCATATTCACCTTTGTTTA 58.661 37.500 19.57 0.00 0.00 2.01
1424 1516 9.844257 TTCACCTTTGTTTAATTTGATGGAAAT 57.156 25.926 0.00 0.00 35.65 2.17
1425 1517 9.844257 TCACCTTTGTTTAATTTGATGGAAATT 57.156 25.926 0.00 0.00 44.77 1.82
1438 1530 5.192927 TGATGGAAATTATTTGGAGCTCGT 58.807 37.500 7.83 0.00 0.00 4.18
1442 1534 5.652014 TGGAAATTATTTGGAGCTCGTGAAT 59.348 36.000 7.83 9.91 0.00 2.57
1451 1543 3.201290 GGAGCTCGTGAATGATGATTGT 58.799 45.455 7.83 0.00 0.00 2.71
1458 1550 4.943093 TCGTGAATGATGATTGTGATTGGT 59.057 37.500 0.00 0.00 0.00 3.67
1460 1552 5.163733 CGTGAATGATGATTGTGATTGGTGA 60.164 40.000 0.00 0.00 0.00 4.02
1470 1562 4.319139 TGTGATTGGTGATTTGGTGTTG 57.681 40.909 0.00 0.00 0.00 3.33
1471 1563 3.059166 GTGATTGGTGATTTGGTGTTGC 58.941 45.455 0.00 0.00 0.00 4.17
1472 1564 2.288091 TGATTGGTGATTTGGTGTTGCG 60.288 45.455 0.00 0.00 0.00 4.85
1533 1626 3.063052 GCTTTTGCATCGCGCTTGC 62.063 57.895 22.02 22.02 46.58 4.01
1571 1664 1.205417 GCATGCTTATGTTTGCCCACT 59.795 47.619 11.37 0.00 0.00 4.00
1619 1712 3.241067 TGTCGGGCTAATCTGTGTAAC 57.759 47.619 0.00 0.00 37.35 2.50
1666 1773 6.291377 TCTGTTGTCTACAAATTCTTCTGCT 58.709 36.000 0.00 0.00 37.63 4.24
1719 1826 3.907894 TGTGATTTTGGTAAGTTCGGC 57.092 42.857 0.00 0.00 0.00 5.54
1720 1827 3.482436 TGTGATTTTGGTAAGTTCGGCT 58.518 40.909 0.00 0.00 0.00 5.52
1746 1855 3.306088 CGTAGCCCTTGAAGAAGTTCAGA 60.306 47.826 5.50 0.00 43.66 3.27
1751 1860 3.812053 CCCTTGAAGAAGTTCAGACACAG 59.188 47.826 5.50 3.52 43.66 3.66
1763 1872 3.435275 TCAGACACAGGCTGTAGAGATT 58.565 45.455 21.59 0.18 34.98 2.40
1818 1928 0.878523 CAAAGTCGGGTGTTCTCGCA 60.879 55.000 0.00 0.00 0.00 5.10
1829 1939 3.589654 TTCTCGCAGGAAGTGGCCG 62.590 63.158 0.00 0.00 0.00 6.13
1834 1944 3.322466 CAGGAAGTGGCCGGGAGT 61.322 66.667 2.18 0.00 0.00 3.85
1837 1947 2.430367 GAAGTGGCCGGGAGTGTT 59.570 61.111 2.18 0.00 0.00 3.32
1838 1948 1.966451 GAAGTGGCCGGGAGTGTTG 60.966 63.158 2.18 0.00 0.00 3.33
1840 1950 4.265056 GTGGCCGGGAGTGTTGGT 62.265 66.667 2.18 0.00 0.00 3.67
1841 1951 3.494254 TGGCCGGGAGTGTTGGTT 61.494 61.111 2.18 0.00 0.00 3.67
1842 1952 2.148052 TGGCCGGGAGTGTTGGTTA 61.148 57.895 2.18 0.00 0.00 2.85
1902 2013 7.573710 TGCATATAGAAGTTGGATTTGTAGGT 58.426 34.615 0.00 0.00 0.00 3.08
1909 2020 8.306313 AGAAGTTGGATTTGTAGGTTTCTTTT 57.694 30.769 0.00 0.00 0.00 2.27
1917 2028 9.193133 GGATTTGTAGGTTTCTTTTCTAAAAGC 57.807 33.333 9.80 0.00 43.85 3.51
1928 2039 2.074547 TCTAAAAGCGGTGGTTCTCG 57.925 50.000 0.00 0.00 0.00 4.04
1946 2057 2.846532 CCTCCCTGTGCCCAAAGT 59.153 61.111 0.00 0.00 0.00 2.66
2007 2118 0.994247 ATGGCATGGACTTGGAGACA 59.006 50.000 0.00 0.00 39.83 3.41
2022 2133 2.900528 GACAGGGAAGTGTCACACG 58.099 57.895 1.22 0.00 45.34 4.49
2032 2143 0.033504 GTGTCACACGAGTGGTCCAT 59.966 55.000 13.14 0.00 45.91 3.41
2103 2214 1.514678 GCGGTTGTGGCATTGTCTCA 61.515 55.000 0.00 0.00 0.00 3.27
2117 2228 5.438117 CATTGTCTCACATCATTATGTCGC 58.562 41.667 0.00 0.00 44.70 5.19
2118 2229 4.122143 TGTCTCACATCATTATGTCGCA 57.878 40.909 0.00 0.00 44.70 5.10
2198 2309 7.811282 TGTTCACTATACATATTGTTCCCCAT 58.189 34.615 0.00 0.00 0.00 4.00
2247 2358 4.263727 ACTTGTACAATGATGGCCAAGGTA 60.264 41.667 10.96 5.35 40.15 3.08
2288 2399 5.663795 AAGCTGCATGATAGTTTGATACG 57.336 39.130 1.02 0.00 0.00 3.06
2307 2418 2.277084 CGTATTGCAGGGTCTTGGTAC 58.723 52.381 0.00 0.00 0.00 3.34
2313 2424 4.650972 TGCAGGGTCTTGGTACTTTTAT 57.349 40.909 0.00 0.00 0.00 1.40
2317 2428 7.179269 TGCAGGGTCTTGGTACTTTTATATTT 58.821 34.615 0.00 0.00 0.00 1.40
2348 2459 1.997669 TGGAACGTTGTGTTTTTGGC 58.002 45.000 5.00 0.00 42.09 4.52
2354 2465 4.640789 ACGTTGTGTTTTTGGCTTATGA 57.359 36.364 0.00 0.00 0.00 2.15
2376 2487 3.502211 ACCCAAATTGTCGAGTTGCTTAG 59.498 43.478 0.00 0.00 32.17 2.18
2380 2491 3.678056 ATTGTCGAGTTGCTTAGTCCA 57.322 42.857 0.00 0.00 0.00 4.02
2385 2496 1.443802 GAGTTGCTTAGTCCACTGCC 58.556 55.000 0.00 0.00 0.00 4.85
2391 2502 1.927895 CTTAGTCCACTGCCGATGTC 58.072 55.000 0.00 0.00 0.00 3.06
2533 2644 9.623000 ACTTGTCTACTGGTGTAAATTTACTTT 57.377 29.630 24.81 10.13 34.77 2.66
2572 2683 2.073816 ACACCTAAAAAGCACGGATCG 58.926 47.619 0.00 0.00 0.00 3.69
2576 2700 1.363145 TAAAAAGCACGGATCGCGGG 61.363 55.000 6.13 5.23 0.00 6.13
2641 2765 0.179056 AACAGCCATTCGGGGATACG 60.179 55.000 0.00 0.00 37.04 3.06
2716 2840 1.805943 GCCACATTTCCATTTGTTGCC 59.194 47.619 0.00 0.00 30.54 4.52
2770 2894 4.684703 GGATATTTCGGATCTACAACACCG 59.315 45.833 0.00 0.00 45.61 4.94
2997 3121 1.744741 GTTGAGGAGAGGCTGCTGC 60.745 63.158 7.10 7.10 30.82 5.25
3320 3444 2.169561 TGCTTTGTAGAGTGACACACCA 59.830 45.455 8.59 0.00 34.49 4.17
3451 3575 4.436113 AATTTCTGTTTGCAAACCCCAT 57.564 36.364 33.33 19.53 38.11 4.00
3492 3616 0.037303 TCTTTCCCAGCTTGCCTCTG 59.963 55.000 0.00 0.00 0.00 3.35
3494 3618 0.250901 TTTCCCAGCTTGCCTCTGAC 60.251 55.000 0.00 0.00 33.54 3.51
3509 3633 3.452627 CCTCTGACTAATTACTGCCTGGT 59.547 47.826 0.00 0.00 0.00 4.00
3526 3650 1.966762 GTGTCTTTGCCCACCATGG 59.033 57.895 11.19 11.19 37.25 3.66
3595 3727 0.686789 TATAGCGCCTCATGCATGGT 59.313 50.000 25.97 8.80 41.33 3.55
3597 3729 0.249868 TAGCGCCTCATGCATGGTAC 60.250 55.000 25.97 14.06 41.33 3.34
3640 3772 0.538057 TGTTTTCTCCCAGCCTGCAG 60.538 55.000 6.78 6.78 0.00 4.41
3671 3803 3.172575 CACACGTACAGCGCGAGG 61.173 66.667 12.10 2.26 46.11 4.63
3726 3858 3.683365 AAAGCATTTGAATCACACCCC 57.317 42.857 0.00 0.00 36.60 4.95
3824 3957 3.685756 GCATTGTTGGCATGCTTGTTATT 59.314 39.130 18.92 0.00 38.22 1.40
4024 4157 6.034577 GTCTTTTTGCACTTGTTTAACAGTCC 59.965 38.462 0.00 0.00 0.00 3.85
4151 4284 3.133721 ACAGCATTGGTTGTGCCTTTTTA 59.866 39.130 0.00 0.00 43.50 1.52
4153 4286 4.024977 CAGCATTGGTTGTGCCTTTTTAAC 60.025 41.667 0.00 0.00 43.50 2.01
4154 4287 3.059935 GCATTGGTTGTGCCTTTTTAACG 60.060 43.478 0.00 0.00 36.61 3.18
4155 4288 4.363999 CATTGGTTGTGCCTTTTTAACGA 58.636 39.130 0.00 0.00 38.35 3.85
4156 4289 3.423996 TGGTTGTGCCTTTTTAACGAC 57.576 42.857 0.00 0.00 38.35 4.34
4157 4290 2.753452 TGGTTGTGCCTTTTTAACGACA 59.247 40.909 0.00 0.00 38.35 4.35
4346 4761 4.517285 AGTGATTGTAAGCACCATACTGG 58.483 43.478 9.16 0.00 45.91 4.00
4386 4805 4.265073 ACCTTTCTCCAATCGGATTGAAG 58.735 43.478 27.77 19.65 41.79 3.02
4583 5029 4.035208 CGGGTAACTAAACCAATCATGCTC 59.965 45.833 0.00 0.00 41.67 4.26
4604 5050 4.642429 TCTTCAGCTCCTAAGTTTGAACC 58.358 43.478 0.00 0.00 30.37 3.62
4729 5176 9.551734 TTCTTATTCTGTATGAACATCCATGAG 57.448 33.333 0.00 0.00 37.52 2.90
4844 5322 3.329386 ACAAGTGATCCGTCATTGTCAG 58.671 45.455 0.00 0.00 34.20 3.51
4856 5334 5.006068 CCGTCATTGTCAGTCTGTGAATATG 59.994 44.000 0.00 0.00 36.74 1.78
4998 5485 6.430451 ACGAGTTAGCAAAAGAACTTCAATG 58.570 36.000 0.00 0.00 36.04 2.82
5056 5546 6.801539 TGAACTGTTATTCAAACCTAGCAG 57.198 37.500 0.00 0.00 35.65 4.24
5255 5754 9.127277 AGTATTCTGGTGCTTAAAGTACAAAAA 57.873 29.630 0.00 0.00 32.12 1.94
5322 5822 4.321452 CCATCTGGTTGACCAAAGAACATG 60.321 45.833 4.18 0.00 46.97 3.21
5458 5970 4.855596 GCAAAGGCTTCTCTTGCG 57.144 55.556 0.00 0.00 36.96 4.85
5480 5992 5.227908 CGTACAACTGTGAGAGGTAAATGT 58.772 41.667 0.00 0.00 0.00 2.71
5516 6028 3.595190 AGGCTTAGTTCTTTTGGGTGT 57.405 42.857 0.00 0.00 0.00 4.16
5649 6162 7.519004 AGGGGATCCTATCTCATTCAGTATTTT 59.481 37.037 12.58 0.00 42.75 1.82
5650 6163 8.166726 GGGGATCCTATCTCATTCAGTATTTTT 58.833 37.037 12.58 0.00 0.00 1.94
5665 6178 7.098477 TCAGTATTTTTCCCAAATGCAATGAG 58.902 34.615 4.54 0.00 0.00 2.90
5670 6183 2.097036 TCCCAAATGCAATGAGCTCAG 58.903 47.619 22.96 10.62 45.94 3.35
5672 6185 3.018856 CCCAAATGCAATGAGCTCAGTA 58.981 45.455 22.96 9.40 45.94 2.74
6159 7213 4.992381 AAGTCGAATAAAGTGTGACAGC 57.008 40.909 0.00 0.00 32.08 4.40
6204 7259 2.822561 TCTGTTGGTTTGTGCAACTCAA 59.177 40.909 0.00 0.00 38.04 3.02
6288 7352 2.108970 AGAACCGTATTCTCACTCCCC 58.891 52.381 0.00 0.00 0.00 4.81
6364 7428 1.880675 TCTCGTCTTCTGTTTCGAGCT 59.119 47.619 8.27 0.00 45.89 4.09
6380 7444 1.445238 GCTGCTCGAGTGTCCAGTC 60.445 63.158 15.13 5.57 0.00 3.51
6444 7508 8.012957 AGGTGTAGAAATGTATCAGAAGTAGG 57.987 38.462 0.00 0.00 0.00 3.18
6452 7516 5.854010 TGTATCAGAAGTAGGACACCATC 57.146 43.478 0.00 0.00 0.00 3.51
6493 7557 1.355720 AGGGCTTGCTAATTGTGACCT 59.644 47.619 0.00 0.00 0.00 3.85
6498 7562 3.004734 GCTTGCTAATTGTGACCTGTGTT 59.995 43.478 0.00 0.00 0.00 3.32
6513 7577 1.000827 TGTGTTGGCGCTAAACAATGG 60.001 47.619 24.09 0.00 39.14 3.16
6530 7595 4.227300 ACAATGGTCTTTCTGCTGGGTATA 59.773 41.667 0.00 0.00 0.00 1.47
6543 7608 3.520696 CTGGGTATATCTGGGTGATCCA 58.479 50.000 0.00 0.00 44.79 3.41
6601 7694 7.416101 CCAAATTTGGTTGCCTTGTTTTATTGT 60.416 33.333 26.34 0.00 43.43 2.71
6617 7710 8.792633 TGTTTTATTGTCTAGCTGCTTATTTGT 58.207 29.630 7.79 0.00 0.00 2.83
6647 7740 1.937223 TGTTTGTGTTCACCTACAGCG 59.063 47.619 0.37 0.00 0.00 5.18
6750 7866 0.965866 TACGGTGACCTGAGAGCCAG 60.966 60.000 0.00 0.00 42.55 4.85
6756 7872 1.306825 ACCTGAGAGCCAGCCTCAT 60.307 57.895 10.08 0.00 43.31 2.90
6774 7913 5.932303 GCCTCATAACTGTTGAAGTGAACTA 59.068 40.000 2.69 0.00 39.81 2.24
6844 7985 1.725641 TCAATCCATGCTGACACGAC 58.274 50.000 0.00 0.00 0.00 4.34
6847 7988 1.945387 ATCCATGCTGACACGACATC 58.055 50.000 0.00 0.00 0.00 3.06
6849 7990 0.723414 CCATGCTGACACGACATCAC 59.277 55.000 0.00 0.00 0.00 3.06
7055 8217 2.409948 AGTGCTATCAAGGCAACCTC 57.590 50.000 0.00 0.00 41.54 3.85
7130 8292 0.666374 TTGTCTCTTCGCGACACAGA 59.334 50.000 9.15 8.80 40.78 3.41
7131 8293 0.238553 TGTCTCTTCGCGACACAGAG 59.761 55.000 24.04 24.04 36.54 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.892814 GGAGCCAAGTCAGCAAAGCT 60.893 55.000 0.00 0.00 40.77 3.74
13 14 1.174712 TGGAGCCAAGTCAGCAAAGC 61.175 55.000 0.00 0.00 0.00 3.51
14 15 0.595095 GTGGAGCCAAGTCAGCAAAG 59.405 55.000 0.00 0.00 0.00 2.77
15 16 0.183492 AGTGGAGCCAAGTCAGCAAA 59.817 50.000 0.00 0.00 0.00 3.68
16 17 0.183492 AAGTGGAGCCAAGTCAGCAA 59.817 50.000 0.00 0.00 0.00 3.91
17 18 0.535780 CAAGTGGAGCCAAGTCAGCA 60.536 55.000 0.00 0.00 0.00 4.41
18 19 0.536006 ACAAGTGGAGCCAAGTCAGC 60.536 55.000 0.00 0.00 0.00 4.26
19 20 1.517242 GACAAGTGGAGCCAAGTCAG 58.483 55.000 11.04 0.00 0.00 3.51
20 21 0.249868 CGACAAGTGGAGCCAAGTCA 60.250 55.000 14.37 0.00 0.00 3.41
21 22 0.249911 ACGACAAGTGGAGCCAAGTC 60.250 55.000 0.00 0.00 0.00 3.01
22 23 0.249911 GACGACAAGTGGAGCCAAGT 60.250 55.000 0.00 0.00 0.00 3.16
23 24 0.951040 GGACGACAAGTGGAGCCAAG 60.951 60.000 0.00 0.00 0.00 3.61
24 25 1.070786 GGACGACAAGTGGAGCCAA 59.929 57.895 0.00 0.00 0.00 4.52
25 26 1.816863 GAGGACGACAAGTGGAGCCA 61.817 60.000 0.00 0.00 0.00 4.75
26 27 1.079750 GAGGACGACAAGTGGAGCC 60.080 63.158 0.00 0.00 0.00 4.70
27 28 0.389166 CAGAGGACGACAAGTGGAGC 60.389 60.000 0.00 0.00 0.00 4.70
28 29 1.248486 TCAGAGGACGACAAGTGGAG 58.752 55.000 0.00 0.00 0.00 3.86
29 30 1.924731 ATCAGAGGACGACAAGTGGA 58.075 50.000 0.00 0.00 0.00 4.02
30 31 2.341257 CAATCAGAGGACGACAAGTGG 58.659 52.381 0.00 0.00 0.00 4.00
31 32 1.728971 GCAATCAGAGGACGACAAGTG 59.271 52.381 0.00 0.00 0.00 3.16
32 33 1.620819 AGCAATCAGAGGACGACAAGT 59.379 47.619 0.00 0.00 0.00 3.16
33 34 2.376808 AGCAATCAGAGGACGACAAG 57.623 50.000 0.00 0.00 0.00 3.16
34 35 2.166459 CCTAGCAATCAGAGGACGACAA 59.834 50.000 0.00 0.00 31.45 3.18
35 36 1.751351 CCTAGCAATCAGAGGACGACA 59.249 52.381 0.00 0.00 31.45 4.35
36 37 2.025155 TCCTAGCAATCAGAGGACGAC 58.975 52.381 0.00 0.00 34.36 4.34
37 38 2.437085 TCCTAGCAATCAGAGGACGA 57.563 50.000 0.00 0.00 34.36 4.20
40 41 6.041409 CAGATTTAGTCCTAGCAATCAGAGGA 59.959 42.308 0.00 0.00 37.02 3.71
41 42 6.222389 CAGATTTAGTCCTAGCAATCAGAGG 58.778 44.000 0.00 0.00 0.00 3.69
42 43 5.695816 GCAGATTTAGTCCTAGCAATCAGAG 59.304 44.000 0.00 0.00 0.00 3.35
43 44 5.129320 TGCAGATTTAGTCCTAGCAATCAGA 59.871 40.000 0.00 0.00 30.02 3.27
44 45 5.236047 GTGCAGATTTAGTCCTAGCAATCAG 59.764 44.000 0.00 0.00 33.35 2.90
45 46 5.118990 GTGCAGATTTAGTCCTAGCAATCA 58.881 41.667 0.00 0.00 33.35 2.57
46 47 5.118990 TGTGCAGATTTAGTCCTAGCAATC 58.881 41.667 0.00 0.00 33.35 2.67
47 48 5.102953 TGTGCAGATTTAGTCCTAGCAAT 57.897 39.130 0.00 0.00 33.35 3.56
48 49 4.551702 TGTGCAGATTTAGTCCTAGCAA 57.448 40.909 0.00 0.00 33.35 3.91
49 50 4.760530 ATGTGCAGATTTAGTCCTAGCA 57.239 40.909 0.00 0.00 0.00 3.49
50 51 4.274459 CCAATGTGCAGATTTAGTCCTAGC 59.726 45.833 6.30 0.00 0.00 3.42
51 52 4.818546 CCCAATGTGCAGATTTAGTCCTAG 59.181 45.833 6.30 0.00 0.00 3.02
52 53 4.227300 ACCCAATGTGCAGATTTAGTCCTA 59.773 41.667 6.30 0.00 0.00 2.94
53 54 3.010584 ACCCAATGTGCAGATTTAGTCCT 59.989 43.478 6.30 0.00 0.00 3.85
54 55 3.129287 CACCCAATGTGCAGATTTAGTCC 59.871 47.826 6.30 0.00 38.34 3.85
55 56 4.361451 CACCCAATGTGCAGATTTAGTC 57.639 45.455 6.30 0.00 38.34 2.59
67 68 0.752054 CCACAACTTGCACCCAATGT 59.248 50.000 0.00 0.00 0.00 2.71
68 69 0.033781 CCCACAACTTGCACCCAATG 59.966 55.000 0.00 0.00 0.00 2.82
69 70 0.105760 TCCCACAACTTGCACCCAAT 60.106 50.000 0.00 0.00 0.00 3.16
70 71 0.105760 ATCCCACAACTTGCACCCAA 60.106 50.000 0.00 0.00 0.00 4.12
71 72 0.827089 CATCCCACAACTTGCACCCA 60.827 55.000 0.00 0.00 0.00 4.51
72 73 1.966762 CATCCCACAACTTGCACCC 59.033 57.895 0.00 0.00 0.00 4.61
73 74 1.290009 GCATCCCACAACTTGCACC 59.710 57.895 0.00 0.00 35.22 5.01
74 75 0.388659 TTGCATCCCACAACTTGCAC 59.611 50.000 0.00 0.00 44.16 4.57
75 76 1.340088 ATTGCATCCCACAACTTGCA 58.660 45.000 0.00 0.00 42.90 4.08
76 77 2.493278 ACTATTGCATCCCACAACTTGC 59.507 45.455 0.00 0.00 35.67 4.01
77 78 4.789012 AACTATTGCATCCCACAACTTG 57.211 40.909 0.00 0.00 0.00 3.16
78 79 4.588528 ACAAACTATTGCATCCCACAACTT 59.411 37.500 0.00 0.00 40.34 2.66
79 80 4.151883 ACAAACTATTGCATCCCACAACT 58.848 39.130 0.00 0.00 40.34 3.16
80 81 4.519540 ACAAACTATTGCATCCCACAAC 57.480 40.909 0.00 0.00 40.34 3.32
81 82 5.543507 AAACAAACTATTGCATCCCACAA 57.456 34.783 0.00 0.00 40.34 3.33
82 83 5.543507 AAAACAAACTATTGCATCCCACA 57.456 34.783 0.00 0.00 40.34 4.17
83 84 5.334028 GCAAAAACAAACTATTGCATCCCAC 60.334 40.000 4.60 0.00 45.61 4.61
84 85 4.754114 GCAAAAACAAACTATTGCATCCCA 59.246 37.500 4.60 0.00 45.61 4.37
85 86 5.281693 GCAAAAACAAACTATTGCATCCC 57.718 39.130 4.60 0.00 45.61 3.85
90 91 7.008176 CCAAAACTTGCAAAAACAAACTATTGC 59.992 33.333 0.00 2.58 46.29 3.56
91 92 8.233190 TCCAAAACTTGCAAAAACAAACTATTG 58.767 29.630 0.00 0.00 42.46 1.90
92 93 8.233868 GTCCAAAACTTGCAAAAACAAACTATT 58.766 29.630 0.00 0.00 0.00 1.73
93 94 7.606073 AGTCCAAAACTTGCAAAAACAAACTAT 59.394 29.630 0.00 0.00 33.03 2.12
94 95 6.931840 AGTCCAAAACTTGCAAAAACAAACTA 59.068 30.769 0.00 0.00 33.03 2.24
95 96 5.762711 AGTCCAAAACTTGCAAAAACAAACT 59.237 32.000 0.00 0.00 33.03 2.66
96 97 5.996219 AGTCCAAAACTTGCAAAAACAAAC 58.004 33.333 0.00 0.00 33.03 2.93
97 98 7.155328 TCTAGTCCAAAACTTGCAAAAACAAA 58.845 30.769 0.00 0.00 39.55 2.83
98 99 6.692486 TCTAGTCCAAAACTTGCAAAAACAA 58.308 32.000 0.00 0.00 39.55 2.83
99 100 6.274157 TCTAGTCCAAAACTTGCAAAAACA 57.726 33.333 0.00 0.00 39.55 2.83
100 101 6.978080 TGATCTAGTCCAAAACTTGCAAAAAC 59.022 34.615 0.00 0.00 39.55 2.43
101 102 7.106439 TGATCTAGTCCAAAACTTGCAAAAA 57.894 32.000 0.00 0.00 39.55 1.94
102 103 6.707440 TGATCTAGTCCAAAACTTGCAAAA 57.293 33.333 0.00 0.00 39.55 2.44
103 104 6.489700 TGATGATCTAGTCCAAAACTTGCAAA 59.510 34.615 0.00 0.00 39.55 3.68
104 105 6.003326 TGATGATCTAGTCCAAAACTTGCAA 58.997 36.000 0.00 0.00 39.55 4.08
105 106 5.412594 GTGATGATCTAGTCCAAAACTTGCA 59.587 40.000 0.00 0.00 39.55 4.08
106 107 5.412594 TGTGATGATCTAGTCCAAAACTTGC 59.587 40.000 0.00 0.00 39.55 4.01
107 108 7.621428 ATGTGATGATCTAGTCCAAAACTTG 57.379 36.000 0.00 0.00 39.55 3.16
108 109 7.337942 GGAATGTGATGATCTAGTCCAAAACTT 59.662 37.037 10.35 0.00 39.55 2.66
109 110 6.825721 GGAATGTGATGATCTAGTCCAAAACT 59.174 38.462 10.35 0.00 42.33 2.66
110 111 6.238211 CGGAATGTGATGATCTAGTCCAAAAC 60.238 42.308 13.87 0.00 0.00 2.43
111 112 5.817296 CGGAATGTGATGATCTAGTCCAAAA 59.183 40.000 13.87 0.00 0.00 2.44
112 113 5.359756 CGGAATGTGATGATCTAGTCCAAA 58.640 41.667 13.87 0.00 0.00 3.28
113 114 4.202253 CCGGAATGTGATGATCTAGTCCAA 60.202 45.833 13.87 0.00 0.00 3.53
114 115 3.321968 CCGGAATGTGATGATCTAGTCCA 59.678 47.826 13.87 0.00 0.00 4.02
115 116 3.574396 TCCGGAATGTGATGATCTAGTCC 59.426 47.826 0.00 6.67 0.00 3.85
116 117 4.038042 TGTCCGGAATGTGATGATCTAGTC 59.962 45.833 5.23 0.00 0.00 2.59
117 118 3.960755 TGTCCGGAATGTGATGATCTAGT 59.039 43.478 5.23 0.00 0.00 2.57
118 119 4.590850 TGTCCGGAATGTGATGATCTAG 57.409 45.455 5.23 0.00 0.00 2.43
119 120 4.405680 ACTTGTCCGGAATGTGATGATCTA 59.594 41.667 5.23 0.00 0.00 1.98
120 121 3.198635 ACTTGTCCGGAATGTGATGATCT 59.801 43.478 5.23 0.00 0.00 2.75
121 122 3.535561 ACTTGTCCGGAATGTGATGATC 58.464 45.455 5.23 0.00 0.00 2.92
122 123 3.634397 ACTTGTCCGGAATGTGATGAT 57.366 42.857 5.23 0.00 0.00 2.45
123 124 3.244387 TGAACTTGTCCGGAATGTGATGA 60.244 43.478 5.23 0.00 0.00 2.92
124 125 3.073678 TGAACTTGTCCGGAATGTGATG 58.926 45.455 5.23 0.00 0.00 3.07
125 126 3.417069 TGAACTTGTCCGGAATGTGAT 57.583 42.857 5.23 0.00 0.00 3.06
126 127 2.920724 TGAACTTGTCCGGAATGTGA 57.079 45.000 5.23 0.00 0.00 3.58
127 128 3.563808 TCTTTGAACTTGTCCGGAATGTG 59.436 43.478 5.23 0.00 0.00 3.21
128 129 3.564225 GTCTTTGAACTTGTCCGGAATGT 59.436 43.478 5.23 1.99 0.00 2.71
129 130 3.815401 AGTCTTTGAACTTGTCCGGAATG 59.185 43.478 5.23 1.23 0.00 2.67
130 131 3.815401 CAGTCTTTGAACTTGTCCGGAAT 59.185 43.478 5.23 0.00 0.00 3.01
131 132 3.202906 CAGTCTTTGAACTTGTCCGGAA 58.797 45.455 5.23 0.00 0.00 4.30
132 133 2.833794 CAGTCTTTGAACTTGTCCGGA 58.166 47.619 0.00 0.00 0.00 5.14
133 134 1.264288 GCAGTCTTTGAACTTGTCCGG 59.736 52.381 0.00 0.00 0.00 5.14
134 135 2.032549 CAGCAGTCTTTGAACTTGTCCG 60.033 50.000 0.00 0.00 0.00 4.79
135 136 2.291741 CCAGCAGTCTTTGAACTTGTCC 59.708 50.000 0.00 0.00 0.00 4.02
136 137 2.945668 ACCAGCAGTCTTTGAACTTGTC 59.054 45.455 0.00 0.00 0.00 3.18
137 138 2.684881 CACCAGCAGTCTTTGAACTTGT 59.315 45.455 0.00 0.00 0.00 3.16
138 139 2.542411 GCACCAGCAGTCTTTGAACTTG 60.542 50.000 0.00 0.00 41.58 3.16
139 140 1.678101 GCACCAGCAGTCTTTGAACTT 59.322 47.619 0.00 0.00 41.58 2.66
140 141 1.133976 AGCACCAGCAGTCTTTGAACT 60.134 47.619 0.00 0.00 45.49 3.01
141 142 1.312815 AGCACCAGCAGTCTTTGAAC 58.687 50.000 0.00 0.00 45.49 3.18
142 143 2.928801 TAGCACCAGCAGTCTTTGAA 57.071 45.000 0.00 0.00 45.49 2.69
143 144 3.423539 AATAGCACCAGCAGTCTTTGA 57.576 42.857 0.00 0.00 45.49 2.69
144 145 3.375299 GGTAATAGCACCAGCAGTCTTTG 59.625 47.826 0.00 0.00 45.49 2.77
145 146 3.264450 AGGTAATAGCACCAGCAGTCTTT 59.736 43.478 0.00 0.00 45.49 2.52
146 147 2.840651 AGGTAATAGCACCAGCAGTCTT 59.159 45.455 0.00 0.00 45.49 3.01
147 148 2.432510 GAGGTAATAGCACCAGCAGTCT 59.567 50.000 0.00 0.00 45.49 3.24
148 149 2.432510 AGAGGTAATAGCACCAGCAGTC 59.567 50.000 0.00 0.00 45.49 3.51
149 150 2.472029 AGAGGTAATAGCACCAGCAGT 58.528 47.619 0.00 0.00 45.49 4.40
150 151 3.550437 AAGAGGTAATAGCACCAGCAG 57.450 47.619 0.00 0.00 45.49 4.24
151 152 4.009675 CAAAAGAGGTAATAGCACCAGCA 58.990 43.478 0.00 0.00 45.49 4.41
152 153 3.181496 GCAAAAGAGGTAATAGCACCAGC 60.181 47.826 0.00 0.00 41.40 4.85
153 154 3.063997 CGCAAAAGAGGTAATAGCACCAG 59.936 47.826 0.00 0.00 41.40 4.00
154 155 3.006940 CGCAAAAGAGGTAATAGCACCA 58.993 45.455 0.00 0.00 41.40 4.17
155 156 3.007635 ACGCAAAAGAGGTAATAGCACC 58.992 45.455 0.00 0.00 39.02 5.01
156 157 4.403453 CAACGCAAAAGAGGTAATAGCAC 58.597 43.478 0.00 0.00 0.00 4.40
157 158 3.438781 CCAACGCAAAAGAGGTAATAGCA 59.561 43.478 0.00 0.00 0.00 3.49
158 159 3.181500 CCCAACGCAAAAGAGGTAATAGC 60.181 47.826 0.00 0.00 0.00 2.97
159 160 4.007659 ACCCAACGCAAAAGAGGTAATAG 58.992 43.478 0.00 0.00 0.00 1.73
160 161 3.754323 CACCCAACGCAAAAGAGGTAATA 59.246 43.478 0.00 0.00 0.00 0.98
161 162 2.556622 CACCCAACGCAAAAGAGGTAAT 59.443 45.455 0.00 0.00 0.00 1.89
162 163 1.950909 CACCCAACGCAAAAGAGGTAA 59.049 47.619 0.00 0.00 0.00 2.85
163 164 1.600023 CACCCAACGCAAAAGAGGTA 58.400 50.000 0.00 0.00 0.00 3.08
164 165 1.106944 CCACCCAACGCAAAAGAGGT 61.107 55.000 0.00 0.00 0.00 3.85
165 166 1.106944 ACCACCCAACGCAAAAGAGG 61.107 55.000 0.00 0.00 0.00 3.69
166 167 0.030638 CACCACCCAACGCAAAAGAG 59.969 55.000 0.00 0.00 0.00 2.85
167 168 2.010582 GCACCACCCAACGCAAAAGA 62.011 55.000 0.00 0.00 0.00 2.52
168 169 1.591327 GCACCACCCAACGCAAAAG 60.591 57.895 0.00 0.00 0.00 2.27
169 170 2.496817 GCACCACCCAACGCAAAA 59.503 55.556 0.00 0.00 0.00 2.44
170 171 3.893763 CGCACCACCCAACGCAAA 61.894 61.111 0.00 0.00 0.00 3.68
171 172 3.752088 TACGCACCACCCAACGCAA 62.752 57.895 0.00 0.00 0.00 4.85
172 173 4.237207 TACGCACCACCCAACGCA 62.237 61.111 0.00 0.00 0.00 5.24
173 174 3.419759 CTACGCACCACCCAACGC 61.420 66.667 0.00 0.00 0.00 4.84
174 175 1.595929 AACTACGCACCACCCAACG 60.596 57.895 0.00 0.00 0.00 4.10
175 176 0.533308 TCAACTACGCACCACCCAAC 60.533 55.000 0.00 0.00 0.00 3.77
176 177 0.180642 TTCAACTACGCACCACCCAA 59.819 50.000 0.00 0.00 0.00 4.12
177 178 0.250124 CTTCAACTACGCACCACCCA 60.250 55.000 0.00 0.00 0.00 4.51
178 179 1.574702 GCTTCAACTACGCACCACCC 61.575 60.000 0.00 0.00 0.00 4.61
179 180 1.866925 GCTTCAACTACGCACCACC 59.133 57.895 0.00 0.00 0.00 4.61
180 181 1.491563 CGCTTCAACTACGCACCAC 59.508 57.895 0.00 0.00 0.00 4.16
181 182 1.666553 CCGCTTCAACTACGCACCA 60.667 57.895 0.00 0.00 0.00 4.17
182 183 1.666872 ACCGCTTCAACTACGCACC 60.667 57.895 0.00 0.00 0.00 5.01
183 184 1.491563 CACCGCTTCAACTACGCAC 59.508 57.895 0.00 0.00 0.00 5.34
184 185 1.666553 CCACCGCTTCAACTACGCA 60.667 57.895 0.00 0.00 0.00 5.24
185 186 1.226030 AACCACCGCTTCAACTACGC 61.226 55.000 0.00 0.00 0.00 4.42
186 187 1.070175 CAAACCACCGCTTCAACTACG 60.070 52.381 0.00 0.00 0.00 3.51
187 188 2.215196 TCAAACCACCGCTTCAACTAC 58.785 47.619 0.00 0.00 0.00 2.73
188 189 2.614983 GTTCAAACCACCGCTTCAACTA 59.385 45.455 0.00 0.00 0.00 2.24
189 190 1.404035 GTTCAAACCACCGCTTCAACT 59.596 47.619 0.00 0.00 0.00 3.16
190 191 1.133407 TGTTCAAACCACCGCTTCAAC 59.867 47.619 0.00 0.00 0.00 3.18
191 192 1.133407 GTGTTCAAACCACCGCTTCAA 59.867 47.619 0.00 0.00 0.00 2.69
192 193 0.736053 GTGTTCAAACCACCGCTTCA 59.264 50.000 0.00 0.00 0.00 3.02
193 194 0.030235 GGTGTTCAAACCACCGCTTC 59.970 55.000 0.00 0.00 40.22 3.86
194 195 0.681564 TGGTGTTCAAACCACCGCTT 60.682 50.000 5.22 0.00 45.43 4.68
195 196 1.077357 TGGTGTTCAAACCACCGCT 60.077 52.632 5.22 0.00 45.43 5.52
196 197 3.515611 TGGTGTTCAAACCACCGC 58.484 55.556 5.22 0.00 45.43 5.68
201 202 4.688021 TGTAAGCAAATGGTGTTCAAACC 58.312 39.130 0.00 0.00 40.94 3.27
202 203 5.982516 TCATGTAAGCAAATGGTGTTCAAAC 59.017 36.000 0.00 0.00 0.00 2.93
203 204 6.154203 TCATGTAAGCAAATGGTGTTCAAA 57.846 33.333 0.00 0.00 0.00 2.69
204 205 5.781210 TCATGTAAGCAAATGGTGTTCAA 57.219 34.783 0.00 0.00 0.00 2.69
205 206 5.781210 TTCATGTAAGCAAATGGTGTTCA 57.219 34.783 0.00 0.00 0.00 3.18
206 207 6.401367 GCAATTCATGTAAGCAAATGGTGTTC 60.401 38.462 0.00 0.00 0.00 3.18
207 208 5.409214 GCAATTCATGTAAGCAAATGGTGTT 59.591 36.000 0.00 0.00 0.00 3.32
208 209 4.931002 GCAATTCATGTAAGCAAATGGTGT 59.069 37.500 0.00 0.00 0.00 4.16
209 210 5.062934 CAGCAATTCATGTAAGCAAATGGTG 59.937 40.000 0.00 0.00 0.00 4.17
210 211 5.172934 CAGCAATTCATGTAAGCAAATGGT 58.827 37.500 0.00 0.00 0.00 3.55
211 212 4.569162 CCAGCAATTCATGTAAGCAAATGG 59.431 41.667 0.00 0.00 0.00 3.16
212 213 4.569162 CCCAGCAATTCATGTAAGCAAATG 59.431 41.667 0.00 0.00 0.00 2.32
213 214 4.383335 CCCCAGCAATTCATGTAAGCAAAT 60.383 41.667 0.00 0.00 0.00 2.32
214 215 3.055963 CCCCAGCAATTCATGTAAGCAAA 60.056 43.478 0.00 0.00 0.00 3.68
215 216 2.496871 CCCCAGCAATTCATGTAAGCAA 59.503 45.455 0.00 0.00 0.00 3.91
216 217 2.101783 CCCCAGCAATTCATGTAAGCA 58.898 47.619 0.00 0.00 0.00 3.91
217 218 1.202452 GCCCCAGCAATTCATGTAAGC 60.202 52.381 0.00 0.00 39.53 3.09
218 219 2.877043 GCCCCAGCAATTCATGTAAG 57.123 50.000 0.00 0.00 39.53 2.34
231 232 2.678934 AATGTGCTGCTGCCCCAG 60.679 61.111 13.47 0.00 38.71 4.45
232 233 2.992689 CAATGTGCTGCTGCCCCA 60.993 61.111 13.47 10.04 38.71 4.96
233 234 4.446413 GCAATGTGCTGCTGCCCC 62.446 66.667 13.47 4.34 40.96 5.80
234 235 3.014085 ATGCAATGTGCTGCTGCCC 62.014 57.895 13.47 1.51 45.31 5.36
235 236 1.809619 CATGCAATGTGCTGCTGCC 60.810 57.895 13.47 5.20 45.31 4.85
236 237 3.780693 CATGCAATGTGCTGCTGC 58.219 55.556 8.89 8.89 45.31 5.25
246 247 4.397420 TCGTTTATATGAGGGCATGCAAT 58.603 39.130 21.36 6.83 35.94 3.56
247 248 3.814625 TCGTTTATATGAGGGCATGCAA 58.185 40.909 21.36 1.71 35.94 4.08
248 249 3.483808 TCGTTTATATGAGGGCATGCA 57.516 42.857 21.36 0.00 35.94 3.96
249 250 6.149474 AGTTAATCGTTTATATGAGGGCATGC 59.851 38.462 9.90 9.90 35.94 4.06
250 251 7.387673 TGAGTTAATCGTTTATATGAGGGCATG 59.612 37.037 0.00 0.00 35.94 4.06
251 252 7.450074 TGAGTTAATCGTTTATATGAGGGCAT 58.550 34.615 0.00 0.00 38.54 4.40
252 253 6.822442 TGAGTTAATCGTTTATATGAGGGCA 58.178 36.000 0.00 0.00 0.00 5.36
253 254 6.128526 GCTGAGTTAATCGTTTATATGAGGGC 60.129 42.308 0.00 0.00 0.00 5.19
254 255 6.369065 GGCTGAGTTAATCGTTTATATGAGGG 59.631 42.308 0.00 0.00 0.00 4.30
255 256 6.929049 TGGCTGAGTTAATCGTTTATATGAGG 59.071 38.462 0.00 0.00 0.00 3.86
319 320 4.240103 TGTGCTGCTGCGTCACCT 62.240 61.111 17.38 0.00 43.34 4.00
320 321 3.720193 CTGTGCTGCTGCGTCACC 61.720 66.667 17.38 0.00 43.34 4.02
331 332 0.328258 GGTGAATGTACCCCTGTGCT 59.672 55.000 0.00 0.00 34.56 4.40
345 351 1.522668 CTTTCGCTGTCATGGGTGAA 58.477 50.000 0.00 0.00 35.80 3.18
353 359 1.710103 TTTGCACGCTTTCGCTGTCA 61.710 50.000 0.00 0.00 39.84 3.58
417 479 0.812549 GGTCTCTCTCTCGTGGTTCC 59.187 60.000 0.00 0.00 0.00 3.62
435 505 0.584876 GTTTTCGTTCAGGTCCACGG 59.415 55.000 0.83 0.00 37.02 4.94
525 595 2.202610 TGCCTCGAGATTCGTGCG 60.203 61.111 15.71 0.00 41.35 5.34
1080 1171 0.876342 CTAGCTCGCCCGAATCCAAC 60.876 60.000 0.00 0.00 0.00 3.77
1237 1329 3.792053 ATCGCCACGAATCGAGCCC 62.792 63.158 10.55 0.00 39.99 5.19
1238 1330 1.883084 AATCGCCACGAATCGAGCC 60.883 57.895 10.55 0.00 39.99 4.70
1239 1331 1.273887 CAATCGCCACGAATCGAGC 59.726 57.895 10.55 10.95 39.99 5.03
1270 1362 3.938637 GAGCCCCTCCCAAAACCGG 62.939 68.421 0.00 0.00 0.00 5.28
1411 1503 7.707893 CGAGCTCCAAATAATTTCCATCAAATT 59.292 33.333 8.47 0.00 45.17 1.82
1420 1512 6.785191 TCATTCACGAGCTCCAAATAATTTC 58.215 36.000 8.47 0.00 0.00 2.17
1421 1513 6.757897 TCATTCACGAGCTCCAAATAATTT 57.242 33.333 8.47 0.00 0.00 1.82
1424 1516 5.427378 TCATCATTCACGAGCTCCAAATAA 58.573 37.500 8.47 0.00 0.00 1.40
1425 1517 5.022282 TCATCATTCACGAGCTCCAAATA 57.978 39.130 8.47 0.00 0.00 1.40
1426 1518 3.877559 TCATCATTCACGAGCTCCAAAT 58.122 40.909 8.47 2.65 0.00 2.32
1427 1519 3.333029 TCATCATTCACGAGCTCCAAA 57.667 42.857 8.47 0.05 0.00 3.28
1428 1520 3.548745 ATCATCATTCACGAGCTCCAA 57.451 42.857 8.47 0.00 0.00 3.53
1432 1524 3.865446 TCACAATCATCATTCACGAGCT 58.135 40.909 0.00 0.00 0.00 4.09
1438 1530 7.412853 AATCACCAATCACAATCATCATTCA 57.587 32.000 0.00 0.00 0.00 2.57
1442 1534 5.481122 ACCAAATCACCAATCACAATCATCA 59.519 36.000 0.00 0.00 0.00 3.07
1451 1543 2.288091 CGCAACACCAAATCACCAATCA 60.288 45.455 0.00 0.00 0.00 2.57
1458 1550 2.160615 CGATTACCGCAACACCAAATCA 59.839 45.455 0.00 0.00 0.00 2.57
1460 1552 2.156098 ACGATTACCGCAACACCAAAT 58.844 42.857 0.00 0.00 43.32 2.32
1470 1562 3.098555 CCCAGCAACGATTACCGC 58.901 61.111 0.00 0.00 43.32 5.68
1471 1563 2.808958 CGCCCAGCAACGATTACCG 61.809 63.158 0.00 0.00 45.44 4.02
1472 1564 1.743995 ACGCCCAGCAACGATTACC 60.744 57.895 0.00 0.00 0.00 2.85
1542 1635 4.924305 AACATAAGCATGCCCATAACTG 57.076 40.909 15.66 5.34 35.39 3.16
1567 1660 8.488651 ACCTTAAATTTCGATACTACAAGTGG 57.511 34.615 0.00 0.00 0.00 4.00
1619 1712 0.036388 AACAGGTGGCCATAGACACG 60.036 55.000 9.72 0.00 38.46 4.49
1666 1773 6.768483 TGACATTACAGGATTCTCAAGAACA 58.232 36.000 0.00 0.00 36.80 3.18
1719 1826 2.762535 TCTTCAAGGGCTACGGAAAG 57.237 50.000 0.00 0.00 0.00 2.62
1720 1827 2.370849 ACTTCTTCAAGGGCTACGGAAA 59.629 45.455 0.00 0.00 33.37 3.13
1725 1832 3.997681 GTCTGAACTTCTTCAAGGGCTAC 59.002 47.826 0.00 0.00 35.92 3.58
1726 1833 3.646162 TGTCTGAACTTCTTCAAGGGCTA 59.354 43.478 0.00 0.00 35.92 3.93
1727 1834 2.439507 TGTCTGAACTTCTTCAAGGGCT 59.560 45.455 0.00 0.00 35.92 5.19
1728 1835 2.550180 GTGTCTGAACTTCTTCAAGGGC 59.450 50.000 0.00 0.00 35.92 5.19
1733 1842 2.435805 AGCCTGTGTCTGAACTTCTTCA 59.564 45.455 0.00 0.00 35.04 3.02
1746 1855 3.957497 CCTAGAATCTCTACAGCCTGTGT 59.043 47.826 7.83 0.00 43.86 3.72
1751 1860 5.053811 GCTTTTCCTAGAATCTCTACAGCC 58.946 45.833 0.00 0.00 0.00 4.85
1788 1898 2.026262 ACCCGACTTTGGCTAATGTCAT 60.026 45.455 22.76 9.46 39.60 3.06
1818 1928 3.322466 CACTCCCGGCCACTTCCT 61.322 66.667 2.24 0.00 0.00 3.36
1829 1939 6.262496 GGAAGCTAATAATAACCAACACTCCC 59.738 42.308 0.00 0.00 0.00 4.30
1834 1944 7.925043 TTTCGGAAGCTAATAATAACCAACA 57.075 32.000 0.00 0.00 0.00 3.33
1842 1952 8.739972 ACACTGAATTTTTCGGAAGCTAATAAT 58.260 29.630 3.19 0.00 39.38 1.28
1902 2013 5.358725 AGAACCACCGCTTTTAGAAAAGAAA 59.641 36.000 17.00 0.00 46.39 2.52
1909 2020 1.938016 GCGAGAACCACCGCTTTTAGA 60.938 52.381 0.00 0.00 46.96 2.10
1917 2028 4.452733 GGGAGGCGAGAACCACCG 62.453 72.222 0.00 0.00 41.08 4.94
1928 2039 2.677875 CTTTGGGCACAGGGAGGC 60.678 66.667 0.00 0.00 0.00 4.70
1946 2057 7.281549 CACAGATGACAATGATGGATGAGTAAA 59.718 37.037 0.00 0.00 0.00 2.01
2007 2118 0.389391 CACTCGTGTGACACTTCCCT 59.611 55.000 14.42 0.00 46.55 4.20
2022 2133 5.182001 GCACCAAATATATCATGGACCACTC 59.818 44.000 19.32 3.70 37.66 3.51
2103 2214 2.352651 GCAGTGTGCGACATAATGATGT 59.647 45.455 0.00 0.00 40.62 3.06
2117 2228 0.968901 ATGGGCCATGAAGCAGTGTG 60.969 55.000 20.49 0.00 0.00 3.82
2118 2229 0.682209 GATGGGCCATGAAGCAGTGT 60.682 55.000 26.77 0.00 0.00 3.55
2167 2278 8.908786 AACAATATGTATAGTGAACAGATGGG 57.091 34.615 6.36 0.00 33.04 4.00
2169 2280 8.993121 GGGAACAATATGTATAGTGAACAGATG 58.007 37.037 6.36 0.00 33.04 2.90
2198 2309 6.098124 ACAAACCAGACCAATTCAAAATCTGA 59.902 34.615 1.18 0.00 39.33 3.27
2247 2358 4.164988 AGCTTAATACAAGACTGGCAGGAT 59.835 41.667 20.34 3.39 0.00 3.24
2288 2399 3.629142 AGTACCAAGACCCTGCAATAC 57.371 47.619 0.00 0.00 0.00 1.89
2317 2428 8.480643 AACACAACGTTCCATTTCAAAATAAA 57.519 26.923 0.00 0.00 29.27 1.40
2331 2442 5.038033 TCATAAGCCAAAAACACAACGTTC 58.962 37.500 0.00 0.00 36.59 3.95
2348 2459 5.631026 CAACTCGACAATTTGGGTCATAAG 58.369 41.667 0.78 0.00 34.97 1.73
2354 2465 1.981256 AGCAACTCGACAATTTGGGT 58.019 45.000 0.78 0.00 0.00 4.51
2376 2487 1.078759 CTTCGACATCGGCAGTGGAC 61.079 60.000 0.73 0.00 40.29 4.02
2380 2491 0.109086 CACTCTTCGACATCGGCAGT 60.109 55.000 0.73 0.00 40.29 4.40
2385 2496 7.370836 GCAATTAAAATACACTCTTCGACATCG 59.629 37.037 0.00 0.00 41.45 3.84
2391 2502 8.607459 AGATCTGCAATTAAAATACACTCTTCG 58.393 33.333 0.00 0.00 0.00 3.79
2530 2641 8.233190 GGTGTCACTCATTAAAATCAGAGAAAG 58.767 37.037 2.35 0.00 32.59 2.62
2533 2644 7.009179 AGGTGTCACTCATTAAAATCAGAGA 57.991 36.000 2.35 0.00 32.59 3.10
2576 2700 1.665679 CTGGTATTCATGTCACCGTGC 59.334 52.381 0.00 0.00 34.94 5.34
2770 2894 2.270527 GAGAGTGAAGGGCAGCCC 59.729 66.667 24.90 24.90 45.90 5.19
2930 3054 1.945394 AGATGCTAATGCTTGCTTCCG 59.055 47.619 0.00 0.00 40.48 4.30
2942 3066 2.231235 TGACTCGCTGTTGAGATGCTAA 59.769 45.455 6.14 0.00 39.35 3.09
2943 3067 1.818674 TGACTCGCTGTTGAGATGCTA 59.181 47.619 6.14 0.00 39.35 3.49
2997 3121 1.745489 GAGCAGGTAACCCCAAGCG 60.745 63.158 0.00 0.00 40.36 4.68
3075 3199 2.729479 GCTGCTCCAGGCTCTAGCA 61.729 63.158 16.92 16.92 43.66 3.49
3171 3295 1.140852 CTGGGATACGCTGGGAATTGA 59.859 52.381 0.00 0.00 37.60 2.57
3298 3422 3.181455 TGGTGTGTCACTCTACAAAGCAT 60.181 43.478 4.27 0.00 39.54 3.79
3320 3444 1.913778 TGACAGCATTCATGTGGCTT 58.086 45.000 5.92 0.30 35.27 4.35
3451 3575 0.036164 TTTCTGGCGCTAGCTTTCCA 59.964 50.000 17.00 15.27 44.37 3.53
3492 3616 4.473477 AGACACCAGGCAGTAATTAGTC 57.527 45.455 0.00 0.00 0.00 2.59
3494 3618 4.142600 GCAAAGACACCAGGCAGTAATTAG 60.143 45.833 0.00 0.00 0.00 1.73
3509 3633 0.187117 TTCCATGGTGGGCAAAGACA 59.813 50.000 12.58 0.00 38.32 3.41
3525 3649 4.645136 GGATTACTGGGACTTGGAATTTCC 59.355 45.833 8.59 8.59 36.96 3.13
3526 3650 5.358160 CAGGATTACTGGGACTTGGAATTTC 59.642 44.000 0.00 0.00 43.70 2.17
3542 3673 2.892784 ACGAAGCTAGCCAGGATTAC 57.107 50.000 12.13 0.00 0.00 1.89
3595 3727 3.009723 GCATGTCAGGCTGCTTTTAGTA 58.990 45.455 10.34 0.00 35.49 1.82
3597 3729 1.814394 TGCATGTCAGGCTGCTTTTAG 59.186 47.619 10.34 0.00 39.16 1.85
3640 3772 0.318614 CGTGTGAATTGGTTGCCACC 60.319 55.000 0.00 0.00 44.56 4.61
3671 3803 2.112190 CCCTGGTTCTCCTCCTCTAAC 58.888 57.143 0.00 0.00 34.23 2.34
3726 3858 4.209080 GGATTTTTCTGAAAACAAGGTGCG 59.791 41.667 14.70 0.00 37.56 5.34
3760 3893 5.336531 CGTTCCTATGAAGAGGGCGTATATT 60.337 44.000 0.00 0.00 37.20 1.28
3761 3894 4.158025 CGTTCCTATGAAGAGGGCGTATAT 59.842 45.833 0.00 0.00 37.20 0.86
3824 3957 7.331026 AGTGAGCAAAAATATAGACAGCACTA 58.669 34.615 0.00 0.00 30.79 2.74
3842 3975 7.065085 GTCTGATAATAAGCTTGAAAGTGAGCA 59.935 37.037 9.86 0.00 41.31 4.26
3886 4019 3.751479 AAATCTGGCAACCAAAAGACC 57.249 42.857 0.00 0.00 30.80 3.85
4124 4257 1.994779 GCACAACCAATGCTGTAATGC 59.005 47.619 0.00 0.00 40.08 3.56
4157 4290 9.942850 CCTTTTAAACATCCAAATAACAAGGAT 57.057 29.630 0.00 0.00 42.71 3.24
4386 4805 9.745323 GCAAAAACAAAGCAATATGAGAATTAC 57.255 29.630 0.00 0.00 0.00 1.89
4560 5004 3.945285 AGCATGATTGGTTTAGTTACCCG 59.055 43.478 0.00 0.00 37.39 5.28
4583 5029 4.646572 AGGTTCAAACTTAGGAGCTGAAG 58.353 43.478 0.00 0.00 32.03 3.02
4604 5050 8.043710 GGAAACATCTTATGGGGATACATCTAG 58.956 40.741 0.00 0.00 39.74 2.43
4729 5176 3.375782 AGCAAACCAGAAAAGCATCAC 57.624 42.857 0.00 0.00 0.00 3.06
4844 5322 8.840321 ACCATATAGCAAAACATATTCACAGAC 58.160 33.333 0.00 0.00 0.00 3.51
4966 5453 6.020971 TCTTTTGCTAACTCGTAGATGACA 57.979 37.500 0.00 0.00 33.89 3.58
4967 5454 6.586844 AGTTCTTTTGCTAACTCGTAGATGAC 59.413 38.462 0.00 0.00 33.89 3.06
5309 5809 6.753744 GCTGGAAATAATCATGTTCTTTGGTC 59.246 38.462 0.00 0.00 0.00 4.02
5322 5822 5.359292 AGAAGGCAAGAAGCTGGAAATAATC 59.641 40.000 0.00 0.00 44.79 1.75
5458 5970 8.773404 AATACATTTACCTCTCACAGTTGTAC 57.227 34.615 0.00 0.00 0.00 2.90
5567 6080 5.491070 AGCATATTTACTGAACAGTGAGCA 58.509 37.500 16.37 2.22 42.52 4.26
5649 6162 2.494471 CTGAGCTCATTGCATTTGGGAA 59.506 45.455 18.63 0.00 45.94 3.97
5650 6163 2.097036 CTGAGCTCATTGCATTTGGGA 58.903 47.619 18.63 0.00 45.94 4.37
5665 6178 2.691409 TTGGCACTGGTATACTGAGC 57.309 50.000 2.25 6.57 34.70 4.26
5956 6476 2.124983 GCGGCATGAGAAGGAGCA 60.125 61.111 0.00 0.00 0.00 4.26
6159 7213 3.558418 AGCTATACAAAATTACGGCACCG 59.442 43.478 7.71 7.71 46.03 4.94
6204 7259 3.104512 TGGTAGTCCACGGATGAAGAAT 58.895 45.455 0.00 0.00 39.03 2.40
6288 7352 3.917380 CAGCTTGTAGAGTTTCTCGTCAG 59.083 47.826 0.00 0.00 35.36 3.51
6364 7428 2.276116 GGGACTGGACACTCGAGCA 61.276 63.158 13.61 0.84 0.00 4.26
6369 7433 2.154462 CAATGTTGGGACTGGACACTC 58.846 52.381 0.00 0.00 0.00 3.51
6380 7444 2.612721 GGGCAAAGTAAGCAATGTTGGG 60.613 50.000 0.00 0.00 0.00 4.12
6444 7508 6.630444 ATCTAGCATGAAATTGATGGTGTC 57.370 37.500 7.36 0.00 33.66 3.67
6452 7516 7.014038 AGCCCTTCTTAATCTAGCATGAAATTG 59.986 37.037 0.00 0.00 0.00 2.32
6493 7557 1.000827 CCATTGTTTAGCGCCAACACA 60.001 47.619 19.51 8.50 33.81 3.72
6498 7562 1.904287 AAGACCATTGTTTAGCGCCA 58.096 45.000 2.29 0.00 0.00 5.69
6513 7577 4.503991 CCCAGATATACCCAGCAGAAAGAC 60.504 50.000 0.00 0.00 0.00 3.01
6597 7690 5.393461 GCCAACAAATAAGCAGCTAGACAAT 60.393 40.000 0.00 0.00 0.00 2.71
6601 7694 3.941483 GAGCCAACAAATAAGCAGCTAGA 59.059 43.478 0.00 0.00 0.00 2.43
6617 7710 2.685388 TGAACACAAACAATCGAGCCAA 59.315 40.909 0.00 0.00 0.00 4.52
6676 7771 1.581934 CAACACAGTTCGCTCTCCAA 58.418 50.000 0.00 0.00 0.00 3.53
6750 7866 4.757149 AGTTCACTTCAACAGTTATGAGGC 59.243 41.667 0.00 0.00 30.92 4.70
6756 7872 8.780846 TTCAGTTTAGTTCACTTCAACAGTTA 57.219 30.769 0.00 0.00 30.92 2.24
6774 7913 2.622064 AGCAGACCGACTTTCAGTTT 57.378 45.000 0.00 0.00 0.00 2.66
6844 7985 8.781067 TTCAAAAGAAAATAGTTGTCGTGATG 57.219 30.769 0.00 0.00 0.00 3.07
6847 7988 8.781067 TCATTCAAAAGAAAATAGTTGTCGTG 57.219 30.769 0.00 0.00 0.00 4.35
6890 8031 1.512926 GGTCAAGCGAACACTGATGT 58.487 50.000 0.00 0.00 42.46 3.06
6979 8121 4.272504 TCGCAAGCACTATTAAGCCATAAC 59.727 41.667 0.00 0.00 37.18 1.89
7055 8217 6.644347 ACATCTAAGACCATAAACAGGAGTG 58.356 40.000 0.00 0.00 0.00 3.51
7130 8292 1.899142 GTTCTCAACAGGGAGAGCTCT 59.101 52.381 18.28 18.28 44.23 4.09
7131 8293 1.620819 TGTTCTCAACAGGGAGAGCTC 59.379 52.381 5.27 5.27 44.23 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.