Multiple sequence alignment - TraesCS7B01G060900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G060900 chr7B 100.000 4950 0 0 1 4950 63566024 63570973 0.000000e+00 9142.0
1 TraesCS7B01G060900 chr7B 87.257 565 59 8 351 905 635314618 635315179 2.510000e-177 632.0
2 TraesCS7B01G060900 chr7B 88.591 149 13 3 755 903 743704428 743704284 1.420000e-40 178.0
3 TraesCS7B01G060900 chr7B 93.939 99 5 1 4342 4439 533547751 533547849 1.110000e-31 148.0
4 TraesCS7B01G060900 chr7B 85.000 60 6 3 4411 4467 29876784 29876725 1.920000e-04 58.4
5 TraesCS7B01G060900 chr7B 85.000 60 6 3 4411 4467 408623318 408623259 1.920000e-04 58.4
6 TraesCS7B01G060900 chr7D 92.994 1613 81 20 2349 3953 104901633 104903221 0.000000e+00 2324.0
7 TraesCS7B01G060900 chr7D 90.652 920 61 15 1 905 615885104 615886013 0.000000e+00 1199.0
8 TraesCS7B01G060900 chr7D 90.639 908 52 12 1 905 605536812 605537689 0.000000e+00 1175.0
9 TraesCS7B01G060900 chr7D 92.996 671 35 7 1639 2301 104900946 104901612 0.000000e+00 968.0
10 TraesCS7B01G060900 chr7D 89.842 758 37 15 899 1638 104900180 104900915 0.000000e+00 937.0
11 TraesCS7B01G060900 chr7D 86.139 404 39 7 4536 4937 104904398 104904786 2.130000e-113 420.0
12 TraesCS7B01G060900 chr7D 95.266 169 6 1 4174 4340 104903399 104903567 2.940000e-67 267.0
13 TraesCS7B01G060900 chr7D 91.429 105 8 1 4353 4457 84803957 84803854 5.170000e-30 143.0
14 TraesCS7B01G060900 chr7A 92.089 1441 73 18 2623 4048 109357068 109358482 0.000000e+00 1991.0
15 TraesCS7B01G060900 chr7A 93.165 673 43 2 1639 2311 109356194 109356863 0.000000e+00 985.0
16 TraesCS7B01G060900 chr7A 89.777 763 52 15 899 1637 109355402 109356162 0.000000e+00 953.0
17 TraesCS7B01G060900 chr7A 87.310 197 11 5 2327 2512 109356847 109357040 3.880000e-51 213.0
18 TraesCS7B01G060900 chr7A 79.798 198 21 10 4168 4350 109358539 109358732 5.200000e-25 126.0
19 TraesCS7B01G060900 chr3B 92.044 905 58 6 1 905 821156240 821157130 0.000000e+00 1260.0
20 TraesCS7B01G060900 chr3B 89.849 926 58 8 1 905 55005826 55006736 0.000000e+00 1157.0
21 TraesCS7B01G060900 chr3B 90.121 911 60 9 1 905 738128394 738127508 0.000000e+00 1157.0
22 TraesCS7B01G060900 chr6D 91.803 915 54 4 1 905 144604210 144603307 0.000000e+00 1254.0
23 TraesCS7B01G060900 chr6D 94.954 753 34 2 1 753 462315853 462316601 0.000000e+00 1177.0
24 TraesCS7B01G060900 chr6D 87.826 460 25 7 455 905 433911082 433910645 1.230000e-140 510.0
25 TraesCS7B01G060900 chr6D 93.939 99 4 2 4346 4443 470724167 470724264 1.110000e-31 148.0
26 TraesCS7B01G060900 chr6D 93.069 101 5 2 4346 4445 459173507 459173408 3.990000e-31 147.0
27 TraesCS7B01G060900 chr6D 87.037 108 12 2 1065 1171 431460185 431460291 2.420000e-23 121.0
28 TraesCS7B01G060900 chr4D 91.531 921 51 8 1 905 69136191 69135282 0.000000e+00 1243.0
29 TraesCS7B01G060900 chr4D 89.834 905 64 14 1 903 55060605 55059727 0.000000e+00 1136.0
30 TraesCS7B01G060900 chr4D 87.166 374 30 7 532 905 143610325 143610680 4.610000e-110 409.0
31 TraesCS7B01G060900 chr5B 90.608 905 59 5 1 905 166545529 166546407 0.000000e+00 1177.0
32 TraesCS7B01G060900 chr5B 85.879 347 42 3 1689 2033 98282064 98282405 3.640000e-96 363.0
33 TraesCS7B01G060900 chr5B 91.743 109 3 6 4352 4456 544620254 544620360 3.990000e-31 147.0
34 TraesCS7B01G060900 chr5B 90.000 80 6 2 2525 2603 98283021 98283099 8.770000e-18 102.0
35 TraesCS7B01G060900 chr6B 90.241 912 63 5 1 903 184716360 184717254 0.000000e+00 1168.0
36 TraesCS7B01G060900 chr5D 90.276 905 56 8 1 905 415245410 415244538 0.000000e+00 1155.0
37 TraesCS7B01G060900 chr5D 93.069 101 7 0 4338 4438 253048761 253048861 1.110000e-31 148.0
38 TraesCS7B01G060900 chr1D 89.834 905 70 12 1 905 450063824 450062942 0.000000e+00 1142.0
39 TraesCS7B01G060900 chr4B 90.818 501 33 3 405 905 40871412 40870925 0.000000e+00 658.0
40 TraesCS7B01G060900 chr4B 89.474 114 7 5 4346 4455 159918614 159918502 6.680000e-29 139.0
41 TraesCS7B01G060900 chr6A 92.233 103 6 2 4337 4438 224620602 224620501 1.440000e-30 145.0
42 TraesCS7B01G060900 chr3D 91.667 108 4 4 4341 4444 465372213 465372319 1.440000e-30 145.0
43 TraesCS7B01G060900 chrUn 89.423 104 10 1 1065 1167 74549326 74549429 4.020000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G060900 chr7B 63566024 63570973 4949 False 9142.0 9142 100.0000 1 4950 1 chr7B.!!$F1 4949
1 TraesCS7B01G060900 chr7B 635314618 635315179 561 False 632.0 632 87.2570 351 905 1 chr7B.!!$F3 554
2 TraesCS7B01G060900 chr7D 615885104 615886013 909 False 1199.0 1199 90.6520 1 905 1 chr7D.!!$F2 904
3 TraesCS7B01G060900 chr7D 605536812 605537689 877 False 1175.0 1175 90.6390 1 905 1 chr7D.!!$F1 904
4 TraesCS7B01G060900 chr7D 104900180 104904786 4606 False 983.2 2324 91.4474 899 4937 5 chr7D.!!$F3 4038
5 TraesCS7B01G060900 chr7A 109355402 109358732 3330 False 853.6 1991 88.4278 899 4350 5 chr7A.!!$F1 3451
6 TraesCS7B01G060900 chr3B 821156240 821157130 890 False 1260.0 1260 92.0440 1 905 1 chr3B.!!$F2 904
7 TraesCS7B01G060900 chr3B 55005826 55006736 910 False 1157.0 1157 89.8490 1 905 1 chr3B.!!$F1 904
8 TraesCS7B01G060900 chr3B 738127508 738128394 886 True 1157.0 1157 90.1210 1 905 1 chr3B.!!$R1 904
9 TraesCS7B01G060900 chr6D 144603307 144604210 903 True 1254.0 1254 91.8030 1 905 1 chr6D.!!$R1 904
10 TraesCS7B01G060900 chr6D 462315853 462316601 748 False 1177.0 1177 94.9540 1 753 1 chr6D.!!$F2 752
11 TraesCS7B01G060900 chr4D 69135282 69136191 909 True 1243.0 1243 91.5310 1 905 1 chr4D.!!$R2 904
12 TraesCS7B01G060900 chr4D 55059727 55060605 878 True 1136.0 1136 89.8340 1 903 1 chr4D.!!$R1 902
13 TraesCS7B01G060900 chr5B 166545529 166546407 878 False 1177.0 1177 90.6080 1 905 1 chr5B.!!$F1 904
14 TraesCS7B01G060900 chr5B 98282064 98283099 1035 False 232.5 363 87.9395 1689 2603 2 chr5B.!!$F3 914
15 TraesCS7B01G060900 chr6B 184716360 184717254 894 False 1168.0 1168 90.2410 1 903 1 chr6B.!!$F1 902
16 TraesCS7B01G060900 chr5D 415244538 415245410 872 True 1155.0 1155 90.2760 1 905 1 chr5D.!!$R1 904
17 TraesCS7B01G060900 chr1D 450062942 450063824 882 True 1142.0 1142 89.8340 1 905 1 chr1D.!!$R1 904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1072 0.037326 TACAGGAGCAGGCACGAAAG 60.037 55.0 0.0 0.0 0.00 2.62 F
1297 1398 0.317854 GGGTTTTCAGCTTGTGTCGC 60.318 55.0 0.0 0.0 0.00 5.19 F
1298 1399 0.380378 GGTTTTCAGCTTGTGTCGCA 59.620 50.0 0.0 0.0 0.00 5.10 F
2259 2406 0.731417 CTTCCATTTGGCTGCTCTCG 59.269 55.0 0.0 0.0 34.44 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2423 2712 0.305922 GTCCGCTATTGCACATCAGC 59.694 55.000 0.0 0.0 39.64 4.26 R
2805 3214 0.331278 TTGGATCAATCTTGGGCGGT 59.669 50.000 0.0 0.0 0.00 5.68 R
3108 3517 1.519455 GAGCTCACGAACCATCCGG 60.519 63.158 9.4 0.0 38.77 5.14 R
4099 4521 0.107945 CAGCACCAAGACTAGCTCCC 60.108 60.000 0.0 0.0 34.61 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.160047 CTCGAGGAGGCCCTGCAT 61.160 66.667 4.63 0.00 44.53 3.96
109 113 3.889044 ATCGACGAGGACGCGCAT 61.889 61.111 5.73 0.00 43.96 4.73
117 121 2.513666 GGACGCGCATTGGGATGA 60.514 61.111 5.73 0.00 35.16 2.92
307 341 1.896122 GCCAGTACCGCTAGTGGGTT 61.896 60.000 25.80 8.92 42.09 4.11
317 351 2.573609 CTAGTGGGTTAGCGCGCCTT 62.574 60.000 30.33 13.66 38.61 4.35
650 691 1.376424 AAGGCCGACGACGTCTAGA 60.376 57.895 24.36 0.00 37.88 2.43
651 692 0.957395 AAGGCCGACGACGTCTAGAA 60.957 55.000 24.36 0.00 37.88 2.10
687 728 1.963338 GCAGGCAGACGCAGACTTT 60.963 57.895 0.00 0.00 41.24 2.66
822 898 2.869101 TTCCATCCCGACACATTTGA 57.131 45.000 0.00 0.00 0.00 2.69
942 1023 2.255770 AAGAGGAAAGGGACTCGGAT 57.744 50.000 0.00 0.00 38.49 4.18
943 1024 1.783071 AGAGGAAAGGGACTCGGATC 58.217 55.000 0.00 0.00 38.49 3.36
944 1025 0.386113 GAGGAAAGGGACTCGGATCG 59.614 60.000 0.00 0.00 38.49 3.69
945 1026 1.043673 AGGAAAGGGACTCGGATCGG 61.044 60.000 0.00 0.00 38.49 4.18
946 1027 1.041447 GGAAAGGGACTCGGATCGGA 61.041 60.000 2.69 2.69 38.49 4.55
987 1068 3.193479 TCATATATACAGGAGCAGGCACG 59.807 47.826 0.00 0.00 0.00 5.34
991 1072 0.037326 TACAGGAGCAGGCACGAAAG 60.037 55.000 0.00 0.00 0.00 2.62
1245 1344 4.554036 GGGCTTGCTCGGGGCTAG 62.554 72.222 6.96 6.96 44.44 3.42
1246 1345 3.787001 GGCTTGCTCGGGGCTAGT 61.787 66.667 12.73 0.00 43.73 2.57
1291 1392 2.424956 GCCATCTAGGGTTTTCAGCTTG 59.575 50.000 0.00 0.00 38.09 4.01
1295 1396 3.740115 TCTAGGGTTTTCAGCTTGTGTC 58.260 45.455 0.00 0.00 0.00 3.67
1297 1398 0.317854 GGGTTTTCAGCTTGTGTCGC 60.318 55.000 0.00 0.00 0.00 5.19
1298 1399 0.380378 GGTTTTCAGCTTGTGTCGCA 59.620 50.000 0.00 0.00 0.00 5.10
1299 1400 1.001378 GGTTTTCAGCTTGTGTCGCAT 60.001 47.619 0.00 0.00 0.00 4.73
1302 1403 2.162319 TTCAGCTTGTGTCGCATGTA 57.838 45.000 0.00 0.00 0.00 2.29
1320 1421 5.830991 GCATGTATGTATTTGGGGGAAACTA 59.169 40.000 0.00 0.00 0.00 2.24
1321 1422 6.493458 GCATGTATGTATTTGGGGGAAACTAT 59.507 38.462 0.00 0.00 0.00 2.12
1357 1458 3.651321 CGTGTCGTTACGATTTTTGTGTG 59.349 43.478 11.52 0.00 46.46 3.82
1379 1480 2.094390 GGGAATTAGGGTTTTTGACGCC 60.094 50.000 0.00 0.00 41.84 5.68
1391 1492 1.019278 TTGACGCCGGAGAAGAATGC 61.019 55.000 13.83 0.00 0.00 3.56
1399 1500 2.095059 CCGGAGAAGAATGCTTGGTTTG 60.095 50.000 0.00 0.00 33.61 2.93
1413 1514 2.139917 TGGTTTGGATTCTCGTGTTCG 58.860 47.619 0.00 0.00 38.55 3.95
1486 1591 7.416777 GGTGGAATTTTCTAATTCTGGATGGAC 60.417 40.741 9.66 0.00 45.81 4.02
1492 1597 2.514458 AATTCTGGATGGACGGCTTT 57.486 45.000 0.00 0.00 0.00 3.51
1498 1603 0.804989 GGATGGACGGCTTTCTGTTG 59.195 55.000 0.00 0.00 30.45 3.33
1499 1605 1.610624 GGATGGACGGCTTTCTGTTGA 60.611 52.381 0.00 0.00 30.45 3.18
1621 1729 1.080498 TGTCCTCTGACCACCCCTTAT 59.920 52.381 0.00 0.00 41.01 1.73
1629 1737 1.920351 GACCACCCCTTATTTCTGGGA 59.080 52.381 0.00 0.00 46.15 4.37
1644 1782 4.826274 TCTGGGACTAGGATTCAAGTTG 57.174 45.455 0.00 0.00 0.00 3.16
1683 1821 0.902984 TGATCGGTGGCTGTACTGGT 60.903 55.000 1.65 0.00 0.00 4.00
1693 1836 4.760204 GTGGCTGTACTGGTTTATCAGTTT 59.240 41.667 0.29 0.00 44.74 2.66
1694 1837 4.759693 TGGCTGTACTGGTTTATCAGTTTG 59.240 41.667 0.29 0.00 44.74 2.93
1707 1850 1.027357 CAGTTTGAAGTGCCTGTGCT 58.973 50.000 0.00 0.00 38.71 4.40
1813 1956 3.007940 CACCAAGTCAGTGGGATCTTGTA 59.992 47.826 13.01 0.00 43.56 2.41
1843 1987 2.214347 CAGATGATGCAAGAGGAGCAG 58.786 52.381 0.00 0.00 46.36 4.24
1884 2028 1.065709 TGATGTCCGCCTTAACCTTCC 60.066 52.381 0.00 0.00 0.00 3.46
1937 2081 7.701539 TGTGACCTTTGTGCTTTATCATATT 57.298 32.000 0.00 0.00 0.00 1.28
1943 2087 7.781693 ACCTTTGTGCTTTATCATATTCTCCAT 59.218 33.333 0.00 0.00 0.00 3.41
2120 2264 7.140522 TCTGGAGGTTGAATATTGATGATGA 57.859 36.000 0.00 0.00 0.00 2.92
2121 2265 6.994496 TCTGGAGGTTGAATATTGATGATGAC 59.006 38.462 0.00 0.00 0.00 3.06
2232 2379 8.588290 AGTTGTCTGTTCTCTCTAATGAGTAT 57.412 34.615 0.00 0.00 40.98 2.12
2259 2406 0.731417 CTTCCATTTGGCTGCTCTCG 59.269 55.000 0.00 0.00 34.44 4.04
2279 2426 5.763204 TCTCGAAAAGCTTTTTGTACCTGAT 59.237 36.000 29.77 5.82 34.04 2.90
2288 2435 7.315890 AGCTTTTTGTACCTGATTTATGCTTC 58.684 34.615 0.00 0.00 0.00 3.86
2311 2466 5.041287 CGTGTCAACACTTTCAGTTAGAGA 58.959 41.667 11.23 0.00 44.34 3.10
2313 2468 5.050490 TGTCAACACTTTCAGTTAGAGAGC 58.950 41.667 0.00 0.00 31.83 4.09
2314 2469 5.163405 TGTCAACACTTTCAGTTAGAGAGCT 60.163 40.000 0.00 0.00 31.83 4.09
2315 2470 5.404066 GTCAACACTTTCAGTTAGAGAGCTC 59.596 44.000 5.27 5.27 31.83 4.09
2316 2471 4.167554 ACACTTTCAGTTAGAGAGCTCG 57.832 45.455 8.37 0.00 31.83 5.03
2317 2472 2.920490 CACTTTCAGTTAGAGAGCTCGC 59.080 50.000 9.76 9.76 31.83 5.03
2318 2473 2.558795 ACTTTCAGTTAGAGAGCTCGCA 59.441 45.455 20.08 2.95 31.83 5.10
2319 2474 3.005897 ACTTTCAGTTAGAGAGCTCGCAA 59.994 43.478 20.08 8.95 31.83 4.85
2320 2475 3.660501 TTCAGTTAGAGAGCTCGCAAA 57.339 42.857 20.08 6.89 34.09 3.68
2321 2476 3.660501 TCAGTTAGAGAGCTCGCAAAA 57.339 42.857 20.08 10.36 34.09 2.44
2322 2477 3.990092 TCAGTTAGAGAGCTCGCAAAAA 58.010 40.909 20.08 7.90 34.09 1.94
2368 2523 4.663334 AGAAGGGCGAACTCCTTTTTAAT 58.337 39.130 0.00 0.00 43.98 1.40
2369 2524 5.812286 AGAAGGGCGAACTCCTTTTTAATA 58.188 37.500 0.00 0.00 43.98 0.98
2400 2555 9.371136 TCTAGAGTTAAGTTGTCAATAGCAATG 57.629 33.333 0.00 0.00 0.00 2.82
2411 2700 5.163513 GTCAATAGCAATGGTTTTGAGTGG 58.836 41.667 16.26 0.00 33.38 4.00
2452 2741 2.288273 GCAATAGCGGACTGGGTACTAG 60.288 54.545 0.00 0.00 44.86 2.57
2563 2969 5.242615 TGGCACAATGTAAATAAGCAACAGA 59.757 36.000 0.00 0.00 31.92 3.41
2604 3010 6.256321 GCTGCAAGGGTTCATATTATGTTTTG 59.744 38.462 3.67 4.59 0.00 2.44
2605 3011 7.238486 TGCAAGGGTTCATATTATGTTTTGT 57.762 32.000 3.67 0.00 0.00 2.83
2606 3012 7.675062 TGCAAGGGTTCATATTATGTTTTGTT 58.325 30.769 3.67 0.00 0.00 2.83
2608 3014 9.646427 GCAAGGGTTCATATTATGTTTTGTTTA 57.354 29.630 3.67 0.00 0.00 2.01
2613 3019 9.632807 GGTTCATATTATGTTTTGTTTACAGCA 57.367 29.630 3.67 0.00 0.00 4.41
2616 3022 9.853555 TCATATTATGTTTTGTTTACAGCAAGG 57.146 29.630 3.67 0.00 0.00 3.61
2617 3023 9.086336 CATATTATGTTTTGTTTACAGCAAGGG 57.914 33.333 0.00 0.00 0.00 3.95
2620 3026 4.749976 TGTTTTGTTTACAGCAAGGGTTC 58.250 39.130 0.00 0.00 0.00 3.62
2621 3027 4.220821 TGTTTTGTTTACAGCAAGGGTTCA 59.779 37.500 0.00 0.00 0.00 3.18
2624 3030 6.909550 TTTGTTTACAGCAAGGGTTCATAT 57.090 33.333 0.00 0.00 0.00 1.78
2639 3045 8.588290 AGGGTTCATATTATTGTTGTGCTTTA 57.412 30.769 0.00 0.00 0.00 1.85
2640 3046 9.200817 AGGGTTCATATTATTGTTGTGCTTTAT 57.799 29.630 0.00 0.00 0.00 1.40
2644 3050 9.734620 TTCATATTATTGTTGTGCTTTATGCTC 57.265 29.630 0.00 0.00 43.37 4.26
2673 3079 9.809395 TCTATTCCTATCGGTTCATATATAGGG 57.191 37.037 0.00 0.00 40.85 3.53
2682 3088 6.099990 TCGGTTCATATATAGGGTCACCAAAA 59.900 38.462 0.00 0.00 40.13 2.44
2696 3102 6.038714 GGGTCACCAAAATTTGTTGCATAAAA 59.961 34.615 4.92 0.00 36.50 1.52
2752 3161 7.229306 TGAGTTGCATTATATGTTGATTCTCCC 59.771 37.037 0.00 0.00 0.00 4.30
2754 3163 6.204852 TGCATTATATGTTGATTCTCCCCT 57.795 37.500 0.00 0.00 0.00 4.79
2756 3165 7.754624 TGCATTATATGTTGATTCTCCCCTTA 58.245 34.615 0.00 0.00 0.00 2.69
3051 3460 2.203070 GCCAATCGGACCGATGCT 60.203 61.111 29.32 12.72 46.30 3.79
3108 3517 0.331616 AGTATGTTGGTGAAGGGGCC 59.668 55.000 0.00 0.00 0.00 5.80
3330 3739 3.559069 CAACAGGCCTGATACATTGGAT 58.441 45.455 39.19 9.77 0.00 3.41
3507 3916 7.183460 ACTCCACTGGTAAGAGTCTAGTATTT 58.817 38.462 0.00 0.00 36.06 1.40
3520 3929 4.034048 GTCTAGTATTTTGGCATGACACGG 59.966 45.833 0.00 0.00 0.00 4.94
3535 3946 1.284657 CACGGCTCACATGATCTGAC 58.715 55.000 0.00 0.00 0.00 3.51
3537 3948 0.176449 CGGCTCACATGATCTGACCA 59.824 55.000 0.00 0.00 0.00 4.02
3541 3952 2.612672 GCTCACATGATCTGACCACATG 59.387 50.000 0.00 14.99 44.42 3.21
3543 3954 1.674441 CACATGATCTGACCACATGCC 59.326 52.381 15.91 0.00 43.21 4.40
3606 4023 1.135141 TCTTTGTGTGTTGCAACAGGC 60.135 47.619 31.81 25.08 40.05 4.85
3779 4196 1.224075 TAGATAGCGCGACGTTAGCT 58.776 50.000 12.10 15.59 41.48 3.32
3790 4207 0.033504 ACGTTAGCTCCCTGTGTGTG 59.966 55.000 0.00 0.00 0.00 3.82
3834 4255 1.866601 GGATTGTTGTTTGTTGCTGCC 59.133 47.619 0.00 0.00 0.00 4.85
3871 4292 5.983118 CCAATAGAAACTTTTGAGGCGTTTT 59.017 36.000 0.00 0.00 31.60 2.43
3872 4293 6.143919 CCAATAGAAACTTTTGAGGCGTTTTC 59.856 38.462 0.00 0.00 31.60 2.29
3953 4374 6.215636 AGGAAGGATGATGATGATGATGATGA 59.784 38.462 0.00 0.00 0.00 2.92
3954 4375 7.057264 GGAAGGATGATGATGATGATGATGAT 58.943 38.462 0.00 0.00 0.00 2.45
3955 4376 7.012799 GGAAGGATGATGATGATGATGATGATG 59.987 40.741 0.00 0.00 0.00 3.07
3956 4377 7.200434 AGGATGATGATGATGATGATGATGA 57.800 36.000 0.00 0.00 0.00 2.92
3957 4378 7.810260 AGGATGATGATGATGATGATGATGAT 58.190 34.615 0.00 0.00 0.00 2.45
3958 4379 7.718753 AGGATGATGATGATGATGATGATGATG 59.281 37.037 0.00 0.00 0.00 3.07
3959 4380 7.716998 GGATGATGATGATGATGATGATGATGA 59.283 37.037 0.00 0.00 0.00 2.92
3960 4381 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
3961 4382 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
3985 4406 4.329489 CATTTTCTTCTCTCGCATGAACG 58.671 43.478 0.00 0.00 0.00 3.95
3998 4419 3.177643 CGCATGAACGTTTGAGTTGTTTC 59.822 43.478 0.46 0.00 34.00 2.78
3999 4420 3.485743 GCATGAACGTTTGAGTTGTTTCC 59.514 43.478 0.46 0.00 34.00 3.13
4011 4432 1.396996 GTTGTTTCCTGCATCGCGTAT 59.603 47.619 5.77 0.00 0.00 3.06
4012 4433 2.588027 TGTTTCCTGCATCGCGTATA 57.412 45.000 5.77 0.00 0.00 1.47
4020 4441 6.016213 TCCTGCATCGCGTATATTACTTTA 57.984 37.500 5.77 0.00 0.00 1.85
4024 4445 8.227791 CCTGCATCGCGTATATTACTTTAATTT 58.772 33.333 5.77 0.00 0.00 1.82
4048 4470 5.998454 ATGTTATGTTGCTCTCATGCTAC 57.002 39.130 0.00 0.00 38.72 3.58
4053 4475 4.690184 TGTTGCTCTCATGCTACATTTG 57.310 40.909 0.00 0.00 41.93 2.32
4054 4476 4.074259 TGTTGCTCTCATGCTACATTTGT 58.926 39.130 0.00 0.00 41.93 2.83
4055 4477 4.083164 TGTTGCTCTCATGCTACATTTGTG 60.083 41.667 0.00 0.00 41.93 3.33
4056 4478 3.941573 TGCTCTCATGCTACATTTGTGA 58.058 40.909 0.00 0.00 0.00 3.58
4057 4479 3.686241 TGCTCTCATGCTACATTTGTGAC 59.314 43.478 0.00 0.00 0.00 3.67
4058 4480 3.064545 GCTCTCATGCTACATTTGTGACC 59.935 47.826 0.00 0.00 0.00 4.02
4060 4482 4.910195 TCTCATGCTACATTTGTGACCTT 58.090 39.130 0.00 0.00 0.00 3.50
4061 4483 5.316167 TCTCATGCTACATTTGTGACCTTT 58.684 37.500 0.00 0.00 0.00 3.11
4062 4484 5.769662 TCTCATGCTACATTTGTGACCTTTT 59.230 36.000 0.00 0.00 0.00 2.27
4063 4485 6.012658 TCATGCTACATTTGTGACCTTTTC 57.987 37.500 0.00 0.00 0.00 2.29
4065 4487 6.265196 TCATGCTACATTTGTGACCTTTTCTT 59.735 34.615 0.00 0.00 0.00 2.52
4066 4488 5.830912 TGCTACATTTGTGACCTTTTCTTG 58.169 37.500 0.00 0.00 0.00 3.02
4067 4489 4.681483 GCTACATTTGTGACCTTTTCTTGC 59.319 41.667 0.00 0.00 0.00 4.01
4068 4490 4.734398 ACATTTGTGACCTTTTCTTGCA 57.266 36.364 0.00 0.00 0.00 4.08
4071 4493 3.781079 TTGTGACCTTTTCTTGCACAG 57.219 42.857 0.00 0.00 40.16 3.66
4074 4496 0.661483 GACCTTTTCTTGCACAGCGC 60.661 55.000 0.00 0.00 42.89 5.92
4091 4513 2.202623 CAGCCGTCGCAGGTAGAC 60.203 66.667 0.00 0.00 37.52 2.59
4092 4514 3.450115 AGCCGTCGCAGGTAGACC 61.450 66.667 0.00 0.00 37.52 3.85
4115 4537 3.742433 CTATGGGAGCTAGTCTTGGTG 57.258 52.381 0.00 0.00 0.00 4.17
4116 4538 0.543749 ATGGGAGCTAGTCTTGGTGC 59.456 55.000 0.00 0.00 0.00 5.01
4117 4539 0.545309 TGGGAGCTAGTCTTGGTGCT 60.545 55.000 5.15 0.00 38.59 4.40
4118 4540 0.107945 GGGAGCTAGTCTTGGTGCTG 60.108 60.000 5.15 0.00 35.76 4.41
4119 4541 0.898320 GGAGCTAGTCTTGGTGCTGA 59.102 55.000 0.00 0.00 35.76 4.26
4120 4542 1.484240 GGAGCTAGTCTTGGTGCTGAT 59.516 52.381 0.00 0.00 35.76 2.90
4121 4543 2.548875 GAGCTAGTCTTGGTGCTGATG 58.451 52.381 0.00 0.00 35.76 3.07
4122 4544 1.012841 GCTAGTCTTGGTGCTGATGC 58.987 55.000 0.00 0.00 40.20 3.91
4145 4567 1.005340 CTCTCGAGCTCAAATGCACC 58.995 55.000 15.40 0.00 34.99 5.01
4150 4572 2.016318 CGAGCTCAAATGCACCCATAA 58.984 47.619 15.40 0.00 34.99 1.90
4350 4911 7.083858 GCAGAAAGCTATACAATGTTTGTTGA 58.916 34.615 0.00 0.00 41.79 3.18
4351 4912 7.272084 GCAGAAAGCTATACAATGTTTGTTGAG 59.728 37.037 0.00 0.00 41.79 3.02
4353 4914 9.502091 AGAAAGCTATACAATGTTTGTTGAGTA 57.498 29.630 0.00 0.00 42.22 2.59
4354 4915 9.543018 GAAAGCTATACAATGTTTGTTGAGTAC 57.457 33.333 0.00 0.00 42.22 2.73
4355 4916 8.848474 AAGCTATACAATGTTTGTTGAGTACT 57.152 30.769 0.00 0.00 42.22 2.73
4356 4917 8.480643 AGCTATACAATGTTTGTTGAGTACTC 57.519 34.615 16.32 16.32 42.22 2.59
4359 4920 9.424319 CTATACAATGTTTGTTGAGTACTCTGT 57.576 33.333 23.01 16.66 42.22 3.41
4361 4922 5.527582 ACAATGTTTGTTGAGTACTCTGTCC 59.472 40.000 23.01 9.08 42.22 4.02
4363 4924 3.131577 TGTTTGTTGAGTACTCTGTCCGT 59.868 43.478 23.01 0.00 0.00 4.69
4364 4925 4.117685 GTTTGTTGAGTACTCTGTCCGTT 58.882 43.478 23.01 0.00 0.00 4.44
4365 4926 3.637998 TGTTGAGTACTCTGTCCGTTC 57.362 47.619 23.01 6.01 0.00 3.95
4366 4927 2.295349 TGTTGAGTACTCTGTCCGTTCC 59.705 50.000 23.01 0.00 0.00 3.62
4367 4928 2.281539 TGAGTACTCTGTCCGTTCCA 57.718 50.000 23.01 0.00 0.00 3.53
4368 4929 2.589720 TGAGTACTCTGTCCGTTCCAA 58.410 47.619 23.01 0.00 0.00 3.53
4369 4930 2.960384 TGAGTACTCTGTCCGTTCCAAA 59.040 45.455 23.01 0.00 0.00 3.28
4370 4931 3.385433 TGAGTACTCTGTCCGTTCCAAAA 59.615 43.478 23.01 0.00 0.00 2.44
4372 4933 5.244402 TGAGTACTCTGTCCGTTCCAAAATA 59.756 40.000 23.01 0.00 0.00 1.40
4373 4934 5.721232 AGTACTCTGTCCGTTCCAAAATAG 58.279 41.667 0.00 0.00 0.00 1.73
4374 4935 4.884668 ACTCTGTCCGTTCCAAAATAGA 57.115 40.909 0.00 0.00 0.00 1.98
4375 4936 5.422214 ACTCTGTCCGTTCCAAAATAGAT 57.578 39.130 0.00 0.00 0.00 1.98
4376 4937 5.178797 ACTCTGTCCGTTCCAAAATAGATG 58.821 41.667 0.00 0.00 0.00 2.90
4377 4938 5.046591 ACTCTGTCCGTTCCAAAATAGATGA 60.047 40.000 0.00 0.00 0.00 2.92
4379 4940 5.046591 TCTGTCCGTTCCAAAATAGATGACT 60.047 40.000 0.00 0.00 0.00 3.41
4380 4941 5.175859 TGTCCGTTCCAAAATAGATGACTC 58.824 41.667 0.00 0.00 0.00 3.36
4381 4942 5.175859 GTCCGTTCCAAAATAGATGACTCA 58.824 41.667 0.00 0.00 0.00 3.41
4382 4943 5.642063 GTCCGTTCCAAAATAGATGACTCAA 59.358 40.000 0.00 0.00 0.00 3.02
4384 4945 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4386 4947 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4388 4949 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
4389 4950 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
4390 4951 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
4391 4952 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
4414 4975 7.567458 ACTAAAGTTAGTACAAAGTTGGGTCA 58.433 34.615 1.81 0.00 41.92 4.02
4415 4976 8.215736 ACTAAAGTTAGTACAAAGTTGGGTCAT 58.784 33.333 1.81 0.00 41.92 3.06
4416 4977 7.506328 AAAGTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
4417 4978 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
4418 4979 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
4419 4980 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
4420 4981 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
4421 4982 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
4424 4985 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
4425 4986 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
4427 4988 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
4429 4990 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4430 4991 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
4432 4993 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4434 4995 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4435 4996 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4436 4997 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4438 4999 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
4440 5001 0.540365 TTGGAACGGAGGGAGTACGT 60.540 55.000 0.00 0.00 43.43 3.57
4442 5003 1.064463 TGGAACGGAGGGAGTACGTAT 60.064 52.381 0.00 0.00 40.31 3.06
4443 5004 2.027385 GGAACGGAGGGAGTACGTATT 58.973 52.381 0.00 0.00 40.31 1.89
4444 5005 3.214328 GGAACGGAGGGAGTACGTATTA 58.786 50.000 0.00 0.00 40.31 0.98
4445 5006 3.003793 GGAACGGAGGGAGTACGTATTAC 59.996 52.174 0.00 0.00 40.31 1.89
4446 5007 3.281727 ACGGAGGGAGTACGTATTACA 57.718 47.619 0.00 0.00 39.30 2.41
4447 5008 3.825328 ACGGAGGGAGTACGTATTACAT 58.175 45.455 0.00 0.00 39.30 2.29
4448 5009 4.210331 ACGGAGGGAGTACGTATTACATT 58.790 43.478 0.00 0.00 39.30 2.71
4449 5010 4.646492 ACGGAGGGAGTACGTATTACATTT 59.354 41.667 0.00 0.00 39.30 2.32
4452 5013 6.460676 CGGAGGGAGTACGTATTACATTTTCT 60.461 42.308 0.00 0.00 32.41 2.52
4453 5014 6.700520 GGAGGGAGTACGTATTACATTTTCTG 59.299 42.308 0.00 0.00 32.41 3.02
4454 5015 7.414222 AGGGAGTACGTATTACATTTTCTGA 57.586 36.000 0.00 0.00 32.41 3.27
4455 5016 8.019656 AGGGAGTACGTATTACATTTTCTGAT 57.980 34.615 0.00 0.00 32.41 2.90
4457 5018 9.106070 GGGAGTACGTATTACATTTTCTGATTT 57.894 33.333 0.00 0.00 32.41 2.17
4496 5057 4.659115 AGTAACATTTAAAGCTCCGGGTT 58.341 39.130 0.00 0.00 34.34 4.11
4497 5058 5.807909 AGTAACATTTAAAGCTCCGGGTTA 58.192 37.500 0.00 0.00 32.43 2.85
4498 5059 5.878669 AGTAACATTTAAAGCTCCGGGTTAG 59.121 40.000 0.00 0.00 32.43 2.34
4499 5060 4.563140 ACATTTAAAGCTCCGGGTTAGA 57.437 40.909 0.00 0.00 32.43 2.10
4500 5061 4.913784 ACATTTAAAGCTCCGGGTTAGAA 58.086 39.130 0.00 0.00 32.43 2.10
4501 5062 5.318630 ACATTTAAAGCTCCGGGTTAGAAA 58.681 37.500 0.00 0.00 32.43 2.52
4503 5064 7.114095 ACATTTAAAGCTCCGGGTTAGAAATA 58.886 34.615 0.00 0.00 32.43 1.40
4504 5065 6.990341 TTTAAAGCTCCGGGTTAGAAATAC 57.010 37.500 0.00 0.00 32.43 1.89
4505 5066 4.563140 AAAGCTCCGGGTTAGAAATACA 57.437 40.909 0.00 0.00 32.43 2.29
4506 5067 3.538634 AGCTCCGGGTTAGAAATACAC 57.461 47.619 0.00 0.00 0.00 2.90
4507 5068 3.105283 AGCTCCGGGTTAGAAATACACT 58.895 45.455 0.00 0.00 0.00 3.55
4509 5070 4.019591 AGCTCCGGGTTAGAAATACACTTT 60.020 41.667 0.00 0.00 0.00 2.66
4510 5071 4.094442 GCTCCGGGTTAGAAATACACTTTG 59.906 45.833 0.00 0.00 0.00 2.77
4511 5072 4.581868 TCCGGGTTAGAAATACACTTTGG 58.418 43.478 0.00 0.00 0.00 3.28
4513 5074 4.393990 CCGGGTTAGAAATACACTTTGGTC 59.606 45.833 0.00 0.00 0.00 4.02
4515 5076 5.704053 CGGGTTAGAAATACACTTTGGTCTT 59.296 40.000 0.00 0.00 0.00 3.01
4516 5077 6.206048 CGGGTTAGAAATACACTTTGGTCTTT 59.794 38.462 0.00 0.00 0.00 2.52
4517 5078 7.368059 GGGTTAGAAATACACTTTGGTCTTTG 58.632 38.462 0.00 0.00 0.00 2.77
4518 5079 7.368059 GGTTAGAAATACACTTTGGTCTTTGG 58.632 38.462 0.00 0.00 0.00 3.28
4519 5080 5.453567 AGAAATACACTTTGGTCTTTGGC 57.546 39.130 0.00 0.00 0.00 4.52
4520 5081 3.915437 AATACACTTTGGTCTTTGGCG 57.085 42.857 0.00 0.00 0.00 5.69
4521 5082 2.335316 TACACTTTGGTCTTTGGCGT 57.665 45.000 0.00 0.00 0.00 5.68
4522 5083 1.470051 ACACTTTGGTCTTTGGCGTT 58.530 45.000 0.00 0.00 0.00 4.84
4523 5084 1.134175 ACACTTTGGTCTTTGGCGTTG 59.866 47.619 0.00 0.00 0.00 4.10
4524 5085 0.102300 ACTTTGGTCTTTGGCGTTGC 59.898 50.000 0.00 0.00 0.00 4.17
4557 5753 3.419793 TGGCAACCAACCAGAGAAG 57.580 52.632 0.00 0.00 32.06 2.85
4558 5754 0.178992 TGGCAACCAACCAGAGAAGG 60.179 55.000 0.00 0.00 32.06 3.46
4560 5756 0.178990 GCAACCAACCAGAGAAGGGT 60.179 55.000 0.00 0.00 41.41 4.34
4563 5759 1.821088 ACCAACCAGAGAAGGGTTCT 58.179 50.000 0.00 0.00 45.26 3.01
4571 5767 6.173880 AACCAGAGAAGGGTTCTTCCTTAGT 61.174 44.000 2.88 0.00 45.26 2.24
4637 5833 2.586357 TATACGCCGCGCATTGCA 60.586 55.556 13.88 0.00 46.97 4.08
4644 5840 4.541482 CGCGCATTGCAGCCGATT 62.541 61.111 8.75 0.00 46.97 3.34
4666 5862 2.510411 TGCACCACACAGGGACAG 59.490 61.111 0.00 0.00 43.89 3.51
4667 5863 2.281761 GCACCACACAGGGACAGG 60.282 66.667 0.00 0.00 43.89 4.00
4668 5864 2.431683 CACCACACAGGGACAGGG 59.568 66.667 0.00 0.00 43.89 4.45
4669 5865 2.146724 CACCACACAGGGACAGGGA 61.147 63.158 0.00 0.00 43.89 4.20
4670 5866 2.147387 ACCACACAGGGACAGGGAC 61.147 63.158 0.00 0.00 43.89 4.46
4671 5867 2.146724 CCACACAGGGACAGGGACA 61.147 63.158 0.00 0.00 0.00 4.02
4711 5907 1.210870 GTTGTCGCGTGGAAACAGTA 58.789 50.000 5.77 0.00 44.46 2.74
4742 5938 1.334960 CGCTTGTCTTTCGCCAAACAT 60.335 47.619 0.00 0.00 0.00 2.71
4743 5939 2.742774 GCTTGTCTTTCGCCAAACATT 58.257 42.857 0.00 0.00 0.00 2.71
4810 6007 0.591170 GCAGCCACGACAAAGCTAAA 59.409 50.000 0.00 0.00 34.38 1.85
4816 6013 4.048504 GCCACGACAAAGCTAAAACATTT 58.951 39.130 0.00 0.00 0.00 2.32
4818 6015 5.332280 GCCACGACAAAGCTAAAACATTTTC 60.332 40.000 0.00 0.00 0.00 2.29
4930 6128 6.470557 AATTTCAGAAAAATGTCCGCAATG 57.529 33.333 0.00 0.00 0.00 2.82
4932 6130 5.697473 TTCAGAAAAATGTCCGCAATGTA 57.303 34.783 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.764128 GGCCTCCATGTCCTCCGA 60.764 66.667 0.00 0.00 0.00 4.55
31 32 4.208686 GCCTGGTACTCCGCCTCG 62.209 72.222 0.00 0.00 36.30 4.63
109 113 1.134280 GCTTGCTCTAGCTCATCCCAA 60.134 52.381 3.26 0.00 42.66 4.12
299 333 2.567564 GAAGGCGCGCTAACCCACTA 62.568 60.000 32.29 0.00 0.00 2.74
467 501 2.762043 GCGCTCCTCCTCCTCCTT 60.762 66.667 0.00 0.00 0.00 3.36
774 844 5.826586 ACAGATTGCACGAAATAAACACAA 58.173 33.333 0.00 0.00 0.00 3.33
775 845 5.431420 ACAGATTGCACGAAATAAACACA 57.569 34.783 0.00 0.00 0.00 3.72
776 846 6.747659 AAACAGATTGCACGAAATAAACAC 57.252 33.333 0.00 0.00 0.00 3.32
777 847 7.763172 AAAAACAGATTGCACGAAATAAACA 57.237 28.000 0.00 0.00 0.00 2.83
822 898 4.016706 CCAACGGGAAGGCCGACT 62.017 66.667 0.00 0.00 35.59 4.18
845 921 5.276348 CCGCATTTTAAAATGAATCGGCTTC 60.276 40.000 34.51 17.65 46.72 3.86
853 929 2.911723 CGCGTCCGCATTTTAAAATGAA 59.088 40.909 34.51 20.38 46.72 2.57
854 930 2.510874 CGCGTCCGCATTTTAAAATGA 58.489 42.857 34.51 17.69 46.72 2.57
910 986 1.450312 CCTCTTAGGCAAGCCACGG 60.450 63.158 14.40 2.57 38.92 4.94
933 1009 0.465824 TTCTCCTCCGATCCGAGTCC 60.466 60.000 9.75 0.00 0.00 3.85
942 1023 2.366266 TCGTTTTTCCTTTCTCCTCCGA 59.634 45.455 0.00 0.00 0.00 4.55
943 1024 2.737252 CTCGTTTTTCCTTTCTCCTCCG 59.263 50.000 0.00 0.00 0.00 4.63
944 1025 3.741249 ACTCGTTTTTCCTTTCTCCTCC 58.259 45.455 0.00 0.00 0.00 4.30
945 1026 4.377897 TGACTCGTTTTTCCTTTCTCCTC 58.622 43.478 0.00 0.00 0.00 3.71
946 1027 4.417426 TGACTCGTTTTTCCTTTCTCCT 57.583 40.909 0.00 0.00 0.00 3.69
987 1068 3.434637 GAGCGAGATGTGTCTCTCTTTC 58.565 50.000 4.18 0.00 44.41 2.62
1235 1334 0.249073 CACGAATCACTAGCCCCGAG 60.249 60.000 0.00 0.00 0.00 4.63
1238 1337 0.530870 GAGCACGAATCACTAGCCCC 60.531 60.000 0.00 0.00 0.00 5.80
1291 1392 3.003275 CCCCAAATACATACATGCGACAC 59.997 47.826 0.00 0.00 0.00 3.67
1295 1396 2.857483 TCCCCCAAATACATACATGCG 58.143 47.619 0.00 0.00 0.00 4.73
1297 1398 8.359642 CAATAGTTTCCCCCAAATACATACATG 58.640 37.037 0.00 0.00 0.00 3.21
1298 1399 7.508977 CCAATAGTTTCCCCCAAATACATACAT 59.491 37.037 0.00 0.00 0.00 2.29
1299 1400 6.836527 CCAATAGTTTCCCCCAAATACATACA 59.163 38.462 0.00 0.00 0.00 2.29
1302 1403 4.653801 GCCAATAGTTTCCCCCAAATACAT 59.346 41.667 0.00 0.00 0.00 2.29
1320 1421 0.392461 ACACGAACTATGCGGCCAAT 60.392 50.000 2.24 0.00 0.00 3.16
1321 1422 1.004320 ACACGAACTATGCGGCCAA 60.004 52.632 2.24 0.00 0.00 4.52
1351 1452 3.621682 AAACCCTAATTCCCCACACAA 57.378 42.857 0.00 0.00 0.00 3.33
1354 1455 3.898741 GTCAAAAACCCTAATTCCCCACA 59.101 43.478 0.00 0.00 0.00 4.17
1357 1458 2.094390 GCGTCAAAAACCCTAATTCCCC 60.094 50.000 0.00 0.00 0.00 4.81
1379 1480 2.095059 CCAAACCAAGCATTCTTCTCCG 60.095 50.000 0.00 0.00 0.00 4.63
1391 1492 3.363970 CGAACACGAGAATCCAAACCAAG 60.364 47.826 0.00 0.00 0.00 3.61
1399 1500 0.992802 GCTGTCGAACACGAGAATCC 59.007 55.000 0.00 0.00 36.72 3.01
1449 1554 5.264395 AGAAAATTCCACCCAAATCGAGAT 58.736 37.500 0.00 0.00 0.00 2.75
1598 1704 0.909610 GGGGTGGTCAGAGGACATCA 60.910 60.000 0.00 0.00 46.17 3.07
1621 1729 5.073144 ACAACTTGAATCCTAGTCCCAGAAA 59.927 40.000 0.00 0.00 0.00 2.52
1629 1737 4.348168 ACTGGTGACAACTTGAATCCTAGT 59.652 41.667 0.00 0.00 42.06 2.57
1644 1782 2.808543 CAGACTAGCCAAAACTGGTGAC 59.191 50.000 0.00 0.00 30.63 3.67
1668 1806 2.277084 GATAAACCAGTACAGCCACCG 58.723 52.381 0.00 0.00 0.00 4.94
1683 1821 4.261572 GCACAGGCACTTCAAACTGATAAA 60.262 41.667 0.00 0.00 40.72 1.40
1693 1836 1.350684 TGGAATAGCACAGGCACTTCA 59.649 47.619 0.00 0.00 44.61 3.02
1694 1837 1.740025 GTGGAATAGCACAGGCACTTC 59.260 52.381 0.00 0.00 44.61 3.01
1707 1850 4.171878 TGGAACACAACAAGGTGGAATA 57.828 40.909 0.00 0.00 43.08 1.75
1798 1941 7.125659 TGTTTATCTGATACAAGATCCCACTGA 59.874 37.037 0.00 0.00 37.98 3.41
1813 1956 6.711194 CCTCTTGCATCATCTGTTTATCTGAT 59.289 38.462 0.00 0.00 35.58 2.90
1973 2117 4.427394 GCATCGAGCGACCTTCAT 57.573 55.556 0.00 0.00 0.00 2.57
2120 2264 5.142806 ACTGCAATATCCCCCAAAATAGT 57.857 39.130 0.00 0.00 0.00 2.12
2121 2265 6.127083 ACAAACTGCAATATCCCCCAAAATAG 60.127 38.462 0.00 0.00 0.00 1.73
2232 2379 5.448654 AGCAGCCAAATGGAAGATGTTATA 58.551 37.500 2.98 0.00 37.39 0.98
2259 2406 8.435430 GCATAAATCAGGTACAAAAAGCTTTTC 58.565 33.333 24.04 11.77 0.00 2.29
2330 2485 5.172205 GCCCTTCTACACTCTAACTGAAAG 58.828 45.833 0.00 0.00 42.29 2.62
2331 2486 4.321750 CGCCCTTCTACACTCTAACTGAAA 60.322 45.833 0.00 0.00 0.00 2.69
2332 2487 3.192844 CGCCCTTCTACACTCTAACTGAA 59.807 47.826 0.00 0.00 0.00 3.02
2333 2488 2.753452 CGCCCTTCTACACTCTAACTGA 59.247 50.000 0.00 0.00 0.00 3.41
2334 2489 2.753452 TCGCCCTTCTACACTCTAACTG 59.247 50.000 0.00 0.00 0.00 3.16
2335 2490 3.083122 TCGCCCTTCTACACTCTAACT 57.917 47.619 0.00 0.00 0.00 2.24
2336 2491 3.193056 AGTTCGCCCTTCTACACTCTAAC 59.807 47.826 0.00 0.00 0.00 2.34
2337 2492 3.428532 AGTTCGCCCTTCTACACTCTAA 58.571 45.455 0.00 0.00 0.00 2.10
2338 2493 3.015327 GAGTTCGCCCTTCTACACTCTA 58.985 50.000 0.00 0.00 0.00 2.43
2339 2494 1.819903 GAGTTCGCCCTTCTACACTCT 59.180 52.381 0.00 0.00 0.00 3.24
2340 2495 1.135053 GGAGTTCGCCCTTCTACACTC 60.135 57.143 0.00 0.00 0.00 3.51
2341 2496 0.896226 GGAGTTCGCCCTTCTACACT 59.104 55.000 0.00 0.00 0.00 3.55
2342 2497 0.896226 AGGAGTTCGCCCTTCTACAC 59.104 55.000 0.00 0.00 0.00 2.90
2343 2498 1.640917 AAGGAGTTCGCCCTTCTACA 58.359 50.000 0.00 0.00 39.72 2.74
2344 2499 2.764439 AAAGGAGTTCGCCCTTCTAC 57.236 50.000 0.00 0.00 42.82 2.59
2345 2500 3.782656 AAAAAGGAGTTCGCCCTTCTA 57.217 42.857 0.00 0.00 42.82 2.10
2346 2501 2.658807 AAAAAGGAGTTCGCCCTTCT 57.341 45.000 0.00 0.00 42.82 2.85
2347 2502 5.878669 TCTATTAAAAAGGAGTTCGCCCTTC 59.121 40.000 0.00 0.00 42.82 3.46
2390 2545 5.138125 ACCACTCAAAACCATTGCTATTG 57.862 39.130 0.00 0.00 0.00 1.90
2395 2550 3.317150 GCTTACCACTCAAAACCATTGC 58.683 45.455 0.00 0.00 0.00 3.56
2423 2712 0.305922 GTCCGCTATTGCACATCAGC 59.694 55.000 0.00 0.00 39.64 4.26
2457 2746 8.282256 AGGGTTATATTAAGATGCTTCTTTGGT 58.718 33.333 18.84 8.93 42.29 3.67
2604 3010 8.466798 ACAATAATATGAACCCTTGCTGTAAAC 58.533 33.333 0.00 0.00 0.00 2.01
2605 3011 8.588290 ACAATAATATGAACCCTTGCTGTAAA 57.412 30.769 0.00 0.00 0.00 2.01
2606 3012 8.465999 CAACAATAATATGAACCCTTGCTGTAA 58.534 33.333 0.00 0.00 0.00 2.41
2608 3014 6.437162 ACAACAATAATATGAACCCTTGCTGT 59.563 34.615 0.00 0.00 0.00 4.40
2609 3015 6.753279 CACAACAATAATATGAACCCTTGCTG 59.247 38.462 0.00 0.00 0.00 4.41
2611 3017 5.519927 GCACAACAATAATATGAACCCTTGC 59.480 40.000 0.00 0.00 0.00 4.01
2613 3019 7.480760 AAGCACAACAATAATATGAACCCTT 57.519 32.000 0.00 0.00 0.00 3.95
2614 3020 7.480760 AAAGCACAACAATAATATGAACCCT 57.519 32.000 0.00 0.00 0.00 4.34
2616 3022 8.755018 GCATAAAGCACAACAATAATATGAACC 58.245 33.333 0.00 0.00 44.79 3.62
2696 3102 8.396272 AGAACAAGTAAAGCACAATAAGATGT 57.604 30.769 0.00 0.00 0.00 3.06
2752 3161 6.092670 CGATCAACCCTGCATAATACATAAGG 59.907 42.308 0.00 0.00 0.00 2.69
2754 3163 6.764379 TCGATCAACCCTGCATAATACATAA 58.236 36.000 0.00 0.00 0.00 1.90
2756 3165 5.227569 TCGATCAACCCTGCATAATACAT 57.772 39.130 0.00 0.00 0.00 2.29
2805 3214 0.331278 TTGGATCAATCTTGGGCGGT 59.669 50.000 0.00 0.00 0.00 5.68
3051 3460 2.610374 GCCTATCACGCGGATAAAACAA 59.390 45.455 12.47 0.00 38.01 2.83
3108 3517 1.519455 GAGCTCACGAACCATCCGG 60.519 63.158 9.40 0.00 38.77 5.14
3225 3634 4.457496 ATGGTGCGCTGGACCTCG 62.457 66.667 15.57 0.00 34.26 4.63
3507 3916 1.965930 GTGAGCCGTGTCATGCCAA 60.966 57.895 0.00 0.00 0.00 4.52
3520 3929 2.391616 TGTGGTCAGATCATGTGAGC 57.608 50.000 7.04 7.04 41.79 4.26
3537 3948 1.171308 GCTCATGACACAAGGCATGT 58.829 50.000 10.78 0.00 45.34 3.21
3541 3952 0.953727 TGTTGCTCATGACACAAGGC 59.046 50.000 6.65 1.56 0.00 4.35
3543 3954 3.136763 AGACTGTTGCTCATGACACAAG 58.863 45.455 6.65 6.01 0.00 3.16
3769 4186 0.732880 CACACAGGGAGCTAACGTCG 60.733 60.000 0.00 0.00 0.00 5.12
3834 4255 7.751768 AGTTTCTATTGGACAAGGAAAGAAG 57.248 36.000 12.74 0.00 31.66 2.85
3953 4374 5.238868 CGAGAGAAGAAAATGGCATCATCAT 59.761 40.000 0.00 0.00 32.24 2.45
3954 4375 4.573607 CGAGAGAAGAAAATGGCATCATCA 59.426 41.667 0.00 0.00 32.24 3.07
3955 4376 4.554330 GCGAGAGAAGAAAATGGCATCATC 60.554 45.833 0.00 2.16 32.24 2.92
3956 4377 3.314635 GCGAGAGAAGAAAATGGCATCAT 59.685 43.478 0.00 0.00 34.56 2.45
3957 4378 2.679837 GCGAGAGAAGAAAATGGCATCA 59.320 45.455 0.00 0.00 0.00 3.07
3958 4379 2.679837 TGCGAGAGAAGAAAATGGCATC 59.320 45.455 0.00 0.00 0.00 3.91
3959 4380 2.715046 TGCGAGAGAAGAAAATGGCAT 58.285 42.857 0.00 0.00 0.00 4.40
3960 4381 2.183478 TGCGAGAGAAGAAAATGGCA 57.817 45.000 0.00 0.00 0.00 4.92
3961 4382 2.679837 TCATGCGAGAGAAGAAAATGGC 59.320 45.455 0.00 0.00 0.00 4.40
3985 4406 3.300009 CGATGCAGGAAACAACTCAAAC 58.700 45.455 0.00 0.00 0.00 2.93
3998 4419 6.699895 TTAAAGTAATATACGCGATGCAGG 57.300 37.500 15.93 0.00 0.00 4.85
3999 4420 9.594038 AAAATTAAAGTAATATACGCGATGCAG 57.406 29.630 15.93 0.00 0.00 4.41
4020 4441 8.472413 AGCATGAGAGCAACATAACATAAAATT 58.528 29.630 0.00 0.00 36.85 1.82
4024 4445 7.047271 TGTAGCATGAGAGCAACATAACATAA 58.953 34.615 0.00 0.00 36.85 1.90
4048 4470 4.431809 TGTGCAAGAAAAGGTCACAAATG 58.568 39.130 0.00 0.00 35.08 2.32
4050 4472 3.675775 GCTGTGCAAGAAAAGGTCACAAA 60.676 43.478 0.00 0.00 37.24 2.83
4051 4473 2.159254 GCTGTGCAAGAAAAGGTCACAA 60.159 45.455 0.00 0.00 37.24 3.33
4052 4474 1.405105 GCTGTGCAAGAAAAGGTCACA 59.595 47.619 0.00 0.00 36.40 3.58
4053 4475 1.597937 CGCTGTGCAAGAAAAGGTCAC 60.598 52.381 0.00 0.00 0.00 3.67
4054 4476 0.662619 CGCTGTGCAAGAAAAGGTCA 59.337 50.000 0.00 0.00 0.00 4.02
4055 4477 0.661483 GCGCTGTGCAAGAAAAGGTC 60.661 55.000 8.57 0.00 45.45 3.85
4056 4478 1.360192 GCGCTGTGCAAGAAAAGGT 59.640 52.632 8.57 0.00 45.45 3.50
4057 4479 4.233408 GCGCTGTGCAAGAAAAGG 57.767 55.556 8.57 0.00 45.45 3.11
4074 4496 2.202623 GTCTACCTGCGACGGCTG 60.203 66.667 0.00 0.00 40.82 4.85
4075 4497 3.450115 GGTCTACCTGCGACGGCT 61.450 66.667 0.00 0.00 40.82 5.52
4097 4519 0.543749 GCACCAAGACTAGCTCCCAT 59.456 55.000 0.00 0.00 0.00 4.00
4098 4520 0.545309 AGCACCAAGACTAGCTCCCA 60.545 55.000 0.00 0.00 30.05 4.37
4099 4521 0.107945 CAGCACCAAGACTAGCTCCC 60.108 60.000 0.00 0.00 34.61 4.30
4100 4522 0.898320 TCAGCACCAAGACTAGCTCC 59.102 55.000 0.00 0.00 34.61 4.70
4101 4523 2.548875 CATCAGCACCAAGACTAGCTC 58.451 52.381 0.00 0.00 34.61 4.09
4102 4524 1.406614 GCATCAGCACCAAGACTAGCT 60.407 52.381 0.00 0.00 41.58 3.32
4115 4537 0.373024 GCTCGAGAGTTTGCATCAGC 59.627 55.000 18.75 0.00 42.57 4.26
4116 4538 1.925847 GAGCTCGAGAGTTTGCATCAG 59.074 52.381 18.75 0.00 0.00 2.90
4117 4539 1.273327 TGAGCTCGAGAGTTTGCATCA 59.727 47.619 18.75 3.66 0.00 3.07
4118 4540 2.001812 TGAGCTCGAGAGTTTGCATC 57.998 50.000 18.75 1.08 0.00 3.91
4119 4541 2.462456 TTGAGCTCGAGAGTTTGCAT 57.538 45.000 18.75 0.00 0.00 3.96
4120 4542 2.238942 TTTGAGCTCGAGAGTTTGCA 57.761 45.000 18.75 0.90 0.00 4.08
4121 4543 2.727298 GCATTTGAGCTCGAGAGTTTGC 60.727 50.000 18.75 12.55 0.00 3.68
4122 4544 2.481568 TGCATTTGAGCTCGAGAGTTTG 59.518 45.455 18.75 6.40 34.99 2.93
4123 4545 2.481952 GTGCATTTGAGCTCGAGAGTTT 59.518 45.455 18.75 0.00 34.99 2.66
4124 4546 2.072298 GTGCATTTGAGCTCGAGAGTT 58.928 47.619 18.75 0.00 34.99 3.01
4125 4547 1.674221 GGTGCATTTGAGCTCGAGAGT 60.674 52.381 18.75 1.10 34.99 3.24
4126 4548 1.005340 GGTGCATTTGAGCTCGAGAG 58.995 55.000 18.75 4.85 34.99 3.20
4342 4903 3.714391 ACGGACAGAGTACTCAACAAAC 58.286 45.455 24.44 8.59 0.00 2.93
4350 4911 4.618920 ATTTTGGAACGGACAGAGTACT 57.381 40.909 0.00 0.00 0.00 2.73
4351 4912 5.717119 TCTATTTTGGAACGGACAGAGTAC 58.283 41.667 0.00 0.00 0.00 2.73
4353 4914 4.884668 TCTATTTTGGAACGGACAGAGT 57.115 40.909 0.00 0.00 0.00 3.24
4354 4915 5.292101 GTCATCTATTTTGGAACGGACAGAG 59.708 44.000 0.00 0.00 0.00 3.35
4355 4916 5.046591 AGTCATCTATTTTGGAACGGACAGA 60.047 40.000 0.00 0.00 0.00 3.41
4356 4917 5.178797 AGTCATCTATTTTGGAACGGACAG 58.821 41.667 0.00 0.00 0.00 3.51
4359 4920 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4361 4922 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
4363 4924 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
4364 4925 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
4365 4926 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
4388 4949 8.703743 TGACCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
4389 4950 7.567458 TGACCCAACTTTGTACTAACTTTAGT 58.433 34.615 6.85 6.85 45.39 2.24
4390 4951 8.617290 ATGACCCAACTTTGTACTAACTTTAG 57.383 34.615 0.00 0.00 36.82 1.85
4391 4952 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
4392 4953 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
4393 4954 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
4394 4955 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
4395 4956 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
4396 4957 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
4397 4958 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
4398 4959 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
4399 4960 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
4400 4961 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
4402 4963 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
4403 4964 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
4405 4966 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
4407 4968 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4408 4969 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
4409 4970 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
4410 4971 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4412 4973 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4414 4975 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4415 4976 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4416 4977 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4417 4978 3.119029 CGTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
4418 4979 2.354403 CGTACTCCCTCCGTTCCAAAAT 60.354 50.000 0.00 0.00 0.00 1.82
4419 4980 1.001181 CGTACTCCCTCCGTTCCAAAA 59.999 52.381 0.00 0.00 0.00 2.44
4420 4981 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
4421 4982 0.540365 ACGTACTCCCTCCGTTCCAA 60.540 55.000 0.00 0.00 0.00 3.53
4424 4985 3.627577 TGTAATACGTACTCCCTCCGTTC 59.372 47.826 0.00 0.00 36.12 3.95
4425 4986 3.620488 TGTAATACGTACTCCCTCCGTT 58.380 45.455 0.00 0.00 36.12 4.44
4427 4988 4.843220 AATGTAATACGTACTCCCTCCG 57.157 45.455 0.00 0.00 33.46 4.63
4429 4990 7.486647 TCAGAAAATGTAATACGTACTCCCTC 58.513 38.462 0.00 0.00 33.46 4.30
4430 4991 7.414222 TCAGAAAATGTAATACGTACTCCCT 57.586 36.000 0.00 0.00 33.46 4.20
4468 5029 7.228706 CCCGGAGCTTTAAATGTTACTATGAAT 59.771 37.037 0.73 0.00 0.00 2.57
4469 5030 6.540914 CCCGGAGCTTTAAATGTTACTATGAA 59.459 38.462 0.73 0.00 0.00 2.57
4470 5031 6.053005 CCCGGAGCTTTAAATGTTACTATGA 58.947 40.000 0.73 0.00 0.00 2.15
4472 5033 5.997843 ACCCGGAGCTTTAAATGTTACTAT 58.002 37.500 0.73 0.00 0.00 2.12
4474 5035 4.296621 ACCCGGAGCTTTAAATGTTACT 57.703 40.909 0.73 0.00 0.00 2.24
4475 5036 5.876460 TCTAACCCGGAGCTTTAAATGTTAC 59.124 40.000 0.73 0.00 0.00 2.50
4476 5037 6.052405 TCTAACCCGGAGCTTTAAATGTTA 57.948 37.500 0.73 0.00 0.00 2.41
4477 5038 4.913784 TCTAACCCGGAGCTTTAAATGTT 58.086 39.130 0.73 0.00 0.00 2.71
4478 5039 4.563140 TCTAACCCGGAGCTTTAAATGT 57.437 40.909 0.73 0.00 0.00 2.71
4479 5040 5.890424 TTTCTAACCCGGAGCTTTAAATG 57.110 39.130 0.73 0.00 0.00 2.32
4480 5041 7.066645 GTGTATTTCTAACCCGGAGCTTTAAAT 59.933 37.037 0.73 4.53 0.00 1.40
4481 5042 6.372381 GTGTATTTCTAACCCGGAGCTTTAAA 59.628 38.462 0.73 0.00 0.00 1.52
4483 5044 5.188359 AGTGTATTTCTAACCCGGAGCTTTA 59.812 40.000 0.73 0.00 0.00 1.85
4484 5045 4.019591 AGTGTATTTCTAACCCGGAGCTTT 60.020 41.667 0.73 0.00 0.00 3.51
4485 5046 3.518303 AGTGTATTTCTAACCCGGAGCTT 59.482 43.478 0.73 0.00 0.00 3.74
4486 5047 3.105283 AGTGTATTTCTAACCCGGAGCT 58.895 45.455 0.73 0.00 0.00 4.09
4489 5050 4.041938 ACCAAAGTGTATTTCTAACCCGGA 59.958 41.667 0.73 0.00 0.00 5.14
4490 5051 4.329392 ACCAAAGTGTATTTCTAACCCGG 58.671 43.478 0.00 0.00 0.00 5.73
4491 5052 5.243207 AGACCAAAGTGTATTTCTAACCCG 58.757 41.667 0.00 0.00 0.00 5.28
4492 5053 7.368059 CAAAGACCAAAGTGTATTTCTAACCC 58.632 38.462 0.00 0.00 27.76 4.11
4496 5057 5.180492 CGCCAAAGACCAAAGTGTATTTCTA 59.820 40.000 0.00 0.00 27.76 2.10
4497 5058 4.023193 CGCCAAAGACCAAAGTGTATTTCT 60.023 41.667 0.00 0.00 27.76 2.52
4498 5059 4.226761 CGCCAAAGACCAAAGTGTATTTC 58.773 43.478 0.00 0.00 27.76 2.17
4499 5060 3.634910 ACGCCAAAGACCAAAGTGTATTT 59.365 39.130 0.00 0.00 30.23 1.40
4500 5061 3.219281 ACGCCAAAGACCAAAGTGTATT 58.781 40.909 0.00 0.00 0.00 1.89
4501 5062 2.858745 ACGCCAAAGACCAAAGTGTAT 58.141 42.857 0.00 0.00 0.00 2.29
4503 5064 1.134175 CAACGCCAAAGACCAAAGTGT 59.866 47.619 0.00 0.00 0.00 3.55
4504 5065 1.838913 CAACGCCAAAGACCAAAGTG 58.161 50.000 0.00 0.00 0.00 3.16
4505 5066 0.102300 GCAACGCCAAAGACCAAAGT 59.898 50.000 0.00 0.00 0.00 2.66
4506 5067 2.885502 GCAACGCCAAAGACCAAAG 58.114 52.632 0.00 0.00 0.00 2.77
4523 5084 1.734137 CCAGCTTCATGCAGATGGC 59.266 57.895 16.63 0.63 43.26 4.40
4525 5086 0.815095 TTGCCAGCTTCATGCAGATG 59.185 50.000 3.45 3.45 45.94 2.90
4528 5089 1.214589 GGTTGCCAGCTTCATGCAG 59.785 57.895 0.00 0.00 45.94 4.41
4531 5092 0.037975 GGTTGGTTGCCAGCTTCATG 60.038 55.000 2.27 0.00 35.07 3.07
4533 5094 1.076412 TGGTTGGTTGCCAGCTTCA 60.076 52.632 2.27 0.00 35.07 3.02
4534 5095 1.662044 CTGGTTGGTTGCCAGCTTC 59.338 57.895 0.00 0.00 45.72 3.86
4535 5096 3.860681 CTGGTTGGTTGCCAGCTT 58.139 55.556 0.00 0.00 45.72 3.74
4585 5781 1.946267 GGCGCCTTCGTCTCAAAAA 59.054 52.632 22.15 0.00 37.34 1.94
4586 5782 3.650369 GGCGCCTTCGTCTCAAAA 58.350 55.556 22.15 0.00 37.34 2.44
4655 5851 2.520536 GCTGTCCCTGTCCCTGTGT 61.521 63.158 0.00 0.00 0.00 3.72
4667 5863 2.888863 CTCAGTCGGGAGCTGTCC 59.111 66.667 0.00 0.00 43.05 4.02
4692 5888 1.191647 CTACTGTTTCCACGCGACAAC 59.808 52.381 15.93 10.20 0.00 3.32
4699 5895 5.619607 CGTTGAATTTTCTACTGTTTCCACG 59.380 40.000 3.97 0.00 31.96 4.94
4711 5907 4.970003 CGAAAGACAAGCGTTGAATTTTCT 59.030 37.500 5.01 0.00 31.91 2.52
4769 5965 5.008613 TGCTGGTTCTTATAATCCGCATTTC 59.991 40.000 12.11 0.00 0.00 2.17
4816 6013 9.487790 AAGGAAATCGCATTTAAAAATTCAGAA 57.512 25.926 0.00 0.00 31.47 3.02
4903 6101 6.045318 TGCGGACATTTTTCTGAAATTTTGA 58.955 32.000 3.31 0.00 0.00 2.69
4904 6102 6.284475 TGCGGACATTTTTCTGAAATTTTG 57.716 33.333 3.31 5.08 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.