Multiple sequence alignment - TraesCS7B01G060500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G060500 chr7B 100.000 2216 0 0 1 2216 63175187 63172972 0.000000e+00 4093
1 TraesCS7B01G060500 chr7B 89.724 652 45 9 1581 2216 63539987 63539342 0.000000e+00 813
2 TraesCS7B01G060500 chr7B 88.326 651 58 5 1581 2216 63491182 63490535 0.000000e+00 765
3 TraesCS7B01G060500 chr2B 87.050 973 94 18 1 954 544052371 544051412 0.000000e+00 1070
4 TraesCS7B01G060500 chr2B 86.934 972 96 17 1 954 544497318 544496360 0.000000e+00 1062
5 TraesCS7B01G060500 chr2B 88.583 254 28 1 1331 1584 544496165 544495913 7.690000e-80 307
6 TraesCS7B01G060500 chr2B 87.795 254 30 1 1331 1584 544051217 544050965 1.660000e-76 296
7 TraesCS7B01G060500 chr7D 88.598 649 56 5 1582 2216 104742385 104743029 0.000000e+00 773
8 TraesCS7B01G060500 chr7D 84.380 653 66 24 1581 2216 104744493 104745126 1.880000e-170 608
9 TraesCS7B01G060500 chr4B 99.471 378 2 0 955 1332 381290809 381290432 0.000000e+00 688
10 TraesCS7B01G060500 chrUn 99.206 378 3 0 955 1332 386523232 386522855 0.000000e+00 682
11 TraesCS7B01G060500 chrUn 99.206 378 3 0 955 1332 407031903 407032280 0.000000e+00 682
12 TraesCS7B01G060500 chrUn 99.465 374 2 0 955 1328 432823858 432823485 0.000000e+00 680
13 TraesCS7B01G060500 chr5D 99.206 378 3 0 955 1332 483805269 483804892 0.000000e+00 682
14 TraesCS7B01G060500 chr5D 98.942 378 4 0 955 1332 6233741 6233364 0.000000e+00 676
15 TraesCS7B01G060500 chr3B 99.206 378 3 0 955 1332 201495510 201495887 0.000000e+00 682
16 TraesCS7B01G060500 chr2D 99.206 378 3 0 955 1332 643855850 643856227 0.000000e+00 682
17 TraesCS7B01G060500 chr1D 99.206 378 3 0 955 1332 254479485 254479862 0.000000e+00 682
18 TraesCS7B01G060500 chr1D 83.553 152 21 4 805 954 364228746 364228895 2.970000e-29 139
19 TraesCS7B01G060500 chr6A 86.184 152 17 4 805 954 466166663 466166514 6.330000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G060500 chr7B 63172972 63175187 2215 True 4093.0 4093 100.0000 1 2216 1 chr7B.!!$R1 2215
1 TraesCS7B01G060500 chr7B 63539342 63539987 645 True 813.0 813 89.7240 1581 2216 1 chr7B.!!$R3 635
2 TraesCS7B01G060500 chr7B 63490535 63491182 647 True 765.0 765 88.3260 1581 2216 1 chr7B.!!$R2 635
3 TraesCS7B01G060500 chr2B 544495913 544497318 1405 True 684.5 1062 87.7585 1 1584 2 chr2B.!!$R2 1583
4 TraesCS7B01G060500 chr2B 544050965 544052371 1406 True 683.0 1070 87.4225 1 1584 2 chr2B.!!$R1 1583
5 TraesCS7B01G060500 chr7D 104742385 104745126 2741 False 690.5 773 86.4890 1581 2216 2 chr7D.!!$F1 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1009 0.24912 CACTACCCAGTTCCGCATCA 59.751 55.0 0.0 0.0 30.46 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 1995 0.320771 AATCTCTGCCGCGTTTCAGT 60.321 50.0 4.92 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 6.767524 ACCTTGTTGTCTTGTTGTATTTCA 57.232 33.333 0.00 0.00 0.00 2.69
130 131 7.164230 ACCTTGTTGTCTTGTTGTATTTCAA 57.836 32.000 0.00 0.00 0.00 2.69
154 155 5.071250 ACACTGTAACAACATACTTCCTGGA 59.929 40.000 0.00 0.00 0.00 3.86
162 163 7.645058 ACAACATACTTCCTGGAAAATATGG 57.355 36.000 27.58 19.43 30.96 2.74
166 167 6.828785 ACATACTTCCTGGAAAATATGGTGTC 59.171 38.462 27.58 0.00 30.96 3.67
173 174 6.069088 TCCTGGAAAATATGGTGTCCTTGTAT 60.069 38.462 0.00 0.00 0.00 2.29
241 242 8.201464 TGAATTTATTTCTCGTAGATGCACCTA 58.799 33.333 0.00 0.00 35.23 3.08
245 246 8.780846 TTATTTCTCGTAGATGCACCTAAAAA 57.219 30.769 0.00 0.00 33.89 1.94
246 247 7.865706 ATTTCTCGTAGATGCACCTAAAAAT 57.134 32.000 0.00 0.00 33.89 1.82
255 256 7.414222 AGATGCACCTAAAAATGAACATGAT 57.586 32.000 0.00 0.00 0.00 2.45
270 271 6.545508 TGAACATGATCAAGCATACTTTTCG 58.454 36.000 2.74 0.00 32.29 3.46
290 291 6.984740 TTCGTAATGCAGTTCATTCAAAAC 57.015 33.333 0.00 0.00 43.90 2.43
299 300 4.730042 CAGTTCATTCAAAACGGATATGCG 59.270 41.667 15.63 15.63 0.00 4.73
350 351 0.539438 TGGGGGTGTTCTGCATTGAC 60.539 55.000 0.00 0.00 0.00 3.18
372 373 8.263940 TGACTGTAGAATAATAACTTGTTGCC 57.736 34.615 0.00 0.00 0.00 4.52
378 379 9.946165 GTAGAATAATAACTTGTTGCCATAACC 57.054 33.333 0.00 0.00 0.00 2.85
403 404 4.217118 GCATAGCTGCTATGGCTTAATTGT 59.783 41.667 37.01 8.22 45.32 2.71
451 452 4.610333 TCTACTCAGGATGTCCAAGCTAA 58.390 43.478 1.30 0.00 38.89 3.09
461 462 7.987458 CAGGATGTCCAAGCTAATAGTAGAAAA 59.013 37.037 0.38 0.00 38.89 2.29
488 489 9.577110 AAATTATCACAACTACATTCAATGCAG 57.423 29.630 0.00 0.00 0.00 4.41
491 492 4.083164 TCACAACTACATTCAATGCAGCAG 60.083 41.667 0.00 0.00 0.00 4.24
513 514 3.753272 GCATTTCTCAGGACAAGCAACTA 59.247 43.478 0.00 0.00 0.00 2.24
514 515 4.378874 GCATTTCTCAGGACAAGCAACTAC 60.379 45.833 0.00 0.00 0.00 2.73
516 517 4.623932 TTCTCAGGACAAGCAACTACAT 57.376 40.909 0.00 0.00 0.00 2.29
518 519 4.569943 TCTCAGGACAAGCAACTACATTC 58.430 43.478 0.00 0.00 0.00 2.67
521 522 6.048732 TCAGGACAAGCAACTACATTCATA 57.951 37.500 0.00 0.00 0.00 2.15
522 523 6.472016 TCAGGACAAGCAACTACATTCATAA 58.528 36.000 0.00 0.00 0.00 1.90
523 524 6.939730 TCAGGACAAGCAACTACATTCATAAA 59.060 34.615 0.00 0.00 0.00 1.40
524 525 7.023575 CAGGACAAGCAACTACATTCATAAAC 58.976 38.462 0.00 0.00 0.00 2.01
525 526 6.151144 AGGACAAGCAACTACATTCATAAACC 59.849 38.462 0.00 0.00 0.00 3.27
528 529 7.145323 ACAAGCAACTACATTCATAAACCAAC 58.855 34.615 0.00 0.00 0.00 3.77
529 530 6.892658 AGCAACTACATTCATAAACCAACA 57.107 33.333 0.00 0.00 0.00 3.33
530 531 7.283625 AGCAACTACATTCATAAACCAACAA 57.716 32.000 0.00 0.00 0.00 2.83
543 562 8.410141 TCATAAACCAACAAACTAACTTTCTGG 58.590 33.333 0.00 0.00 31.73 3.86
551 570 7.054491 ACAAACTAACTTTCTGGAAATGCAT 57.946 32.000 0.00 0.00 0.00 3.96
552 571 8.177119 ACAAACTAACTTTCTGGAAATGCATA 57.823 30.769 0.00 0.00 0.00 3.14
562 581 7.701539 TTCTGGAAATGCATATTTGTACACT 57.298 32.000 0.00 0.00 36.66 3.55
569 588 7.389803 AATGCATATTTGTACACTAGCACAA 57.610 32.000 0.00 0.00 33.18 3.33
582 601 7.795482 ACACTAGCACAATAACTTTGTACAA 57.205 32.000 3.59 3.59 0.00 2.41
585 604 7.586300 CACTAGCACAATAACTTTGTACAACAC 59.414 37.037 8.07 0.00 0.00 3.32
596 615 6.970484 ACTTTGTACAACACCATTTCTCATC 58.030 36.000 8.07 0.00 0.00 2.92
598 617 6.558771 TTGTACAACACCATTTCTCATCTG 57.441 37.500 3.59 0.00 0.00 2.90
601 620 5.695851 ACAACACCATTTCTCATCTGTTC 57.304 39.130 0.00 0.00 0.00 3.18
645 664 3.196469 CACATCCTCTAGTTCCTGAGCAA 59.804 47.826 0.00 0.00 0.00 3.91
654 673 6.299141 TCTAGTTCCTGAGCAAATGAGTTTT 58.701 36.000 0.00 0.00 0.00 2.43
657 676 4.589216 TCCTGAGCAAATGAGTTTTTGG 57.411 40.909 0.00 0.00 37.13 3.28
663 682 4.119136 AGCAAATGAGTTTTTGGAAACCG 58.881 39.130 0.00 0.00 44.97 4.44
669 688 1.136110 AGTTTTTGGAAACCGGCACAG 59.864 47.619 0.00 0.00 44.97 3.66
686 705 4.222114 GCACAGCAGCAAACTAACTTTAG 58.778 43.478 0.00 0.00 36.82 1.85
724 743 8.893219 TTTTATGGATCTGTCATATGTGTCTC 57.107 34.615 1.90 0.00 0.00 3.36
725 744 7.601705 TTATGGATCTGTCATATGTGTCTCA 57.398 36.000 1.90 0.00 0.00 3.27
726 745 6.683312 ATGGATCTGTCATATGTGTCTCAT 57.317 37.500 1.90 0.00 40.25 2.90
727 746 6.094193 TGGATCTGTCATATGTGTCTCATC 57.906 41.667 1.90 0.00 37.91 2.92
728 747 5.837438 TGGATCTGTCATATGTGTCTCATCT 59.163 40.000 1.90 0.00 37.91 2.90
729 748 6.015603 TGGATCTGTCATATGTGTCTCATCTC 60.016 42.308 1.90 0.00 37.91 2.75
730 749 6.209192 GGATCTGTCATATGTGTCTCATCTCT 59.791 42.308 1.90 0.00 37.91 3.10
731 750 6.631971 TCTGTCATATGTGTCTCATCTCTC 57.368 41.667 1.90 0.00 37.91 3.20
732 751 6.125029 TCTGTCATATGTGTCTCATCTCTCA 58.875 40.000 1.90 0.00 37.91 3.27
741 760 3.450096 TGTCTCATCTCTCATGGACAAGG 59.550 47.826 0.00 0.00 31.34 3.61
747 766 3.510459 TCTCTCATGGACAAGGTCAAGA 58.490 45.455 0.00 0.00 33.68 3.02
749 768 3.510459 TCTCATGGACAAGGTCAAGAGA 58.490 45.455 9.21 9.21 35.02 3.10
751 770 4.347876 TCTCATGGACAAGGTCAAGAGAAA 59.652 41.667 10.26 0.00 34.73 2.52
762 781 7.288621 ACAAGGTCAAGAGAAATTTTCCTGATT 59.711 33.333 5.52 0.00 0.00 2.57
767 786 9.617975 GTCAAGAGAAATTTTCCTGATTTACTG 57.382 33.333 5.52 0.00 0.00 2.74
771 790 9.018582 AGAGAAATTTTCCTGATTTACTGAAGG 57.981 33.333 5.52 0.00 0.00 3.46
772 791 8.940397 AGAAATTTTCCTGATTTACTGAAGGA 57.060 30.769 5.52 0.00 37.04 3.36
776 795 6.935240 TTTCCTGATTTACTGAAGGAGAGA 57.065 37.500 0.00 0.00 39.90 3.10
784 803 3.584406 ACTGAAGGAGAGAACGTGATG 57.416 47.619 0.00 0.00 0.00 3.07
785 804 2.232452 ACTGAAGGAGAGAACGTGATGG 59.768 50.000 0.00 0.00 0.00 3.51
796 815 5.525378 AGAGAACGTGATGGCAATTATCTTC 59.475 40.000 0.00 0.00 0.00 2.87
797 816 5.431765 AGAACGTGATGGCAATTATCTTCT 58.568 37.500 0.00 0.00 0.00 2.85
798 817 5.525378 AGAACGTGATGGCAATTATCTTCTC 59.475 40.000 0.00 0.00 0.00 2.87
799 818 5.028549 ACGTGATGGCAATTATCTTCTCT 57.971 39.130 0.00 0.00 0.00 3.10
800 819 4.813161 ACGTGATGGCAATTATCTTCTCTG 59.187 41.667 0.00 0.00 0.00 3.35
815 834 5.389520 TCTTCTCTGAAGTCTTCCTGAAGA 58.610 41.667 23.42 23.42 44.47 2.87
858 877 6.923199 AGAAATGCTGGGGGATTATAATTG 57.077 37.500 0.00 0.00 33.20 2.32
883 902 5.978934 ACCTTTGAACTTTGTGTACTACG 57.021 39.130 0.00 0.00 0.00 3.51
884 903 5.663456 ACCTTTGAACTTTGTGTACTACGA 58.337 37.500 0.00 0.00 0.00 3.43
904 923 3.131933 CGATCATCTCCAGGTTTGTCTCT 59.868 47.826 0.00 0.00 0.00 3.10
916 935 3.548214 GGTTTGTCTCTTCTCGGTTTTGC 60.548 47.826 0.00 0.00 0.00 3.68
922 941 4.273724 GTCTCTTCTCGGTTTTGCTCTTTT 59.726 41.667 0.00 0.00 0.00 2.27
938 957 5.468072 TGCTCTTTTTCTTGACAGATCTGAC 59.532 40.000 29.27 22.77 0.00 3.51
961 980 9.481340 TGACATCTCAGAATTATATTTCTTCCG 57.519 33.333 7.07 0.00 33.69 4.30
962 981 8.839310 ACATCTCAGAATTATATTTCTTCCGG 57.161 34.615 7.07 0.00 33.69 5.14
963 982 8.651389 ACATCTCAGAATTATATTTCTTCCGGA 58.349 33.333 0.00 0.00 33.69 5.14
964 983 9.664332 CATCTCAGAATTATATTTCTTCCGGAT 57.336 33.333 4.15 0.00 33.69 4.18
965 984 9.883142 ATCTCAGAATTATATTTCTTCCGGATC 57.117 33.333 4.15 0.00 33.69 3.36
966 985 8.870116 TCTCAGAATTATATTTCTTCCGGATCA 58.130 33.333 4.15 0.00 33.69 2.92
967 986 9.494271 CTCAGAATTATATTTCTTCCGGATCAA 57.506 33.333 4.15 0.00 33.69 2.57
976 995 9.877178 ATATTTCTTCCGGATCAATATCACTAC 57.123 33.333 4.15 0.00 33.41 2.73
977 996 5.723672 TCTTCCGGATCAATATCACTACC 57.276 43.478 4.15 0.00 33.41 3.18
978 997 4.527038 TCTTCCGGATCAATATCACTACCC 59.473 45.833 4.15 0.00 33.41 3.69
979 998 3.851979 TCCGGATCAATATCACTACCCA 58.148 45.455 0.00 0.00 33.41 4.51
980 999 3.832490 TCCGGATCAATATCACTACCCAG 59.168 47.826 0.00 0.00 33.41 4.45
981 1000 3.578716 CCGGATCAATATCACTACCCAGT 59.421 47.826 0.00 0.00 33.41 4.00
982 1001 4.040461 CCGGATCAATATCACTACCCAGTT 59.960 45.833 0.00 0.00 33.41 3.16
983 1002 5.230942 CGGATCAATATCACTACCCAGTTC 58.769 45.833 0.00 0.00 33.41 3.01
984 1003 5.552178 GGATCAATATCACTACCCAGTTCC 58.448 45.833 0.00 0.00 33.41 3.62
985 1004 4.665833 TCAATATCACTACCCAGTTCCG 57.334 45.455 0.00 0.00 30.46 4.30
986 1005 3.131396 CAATATCACTACCCAGTTCCGC 58.869 50.000 0.00 0.00 30.46 5.54
987 1006 1.855295 TATCACTACCCAGTTCCGCA 58.145 50.000 0.00 0.00 30.46 5.69
988 1007 1.204146 ATCACTACCCAGTTCCGCAT 58.796 50.000 0.00 0.00 30.46 4.73
989 1008 0.535335 TCACTACCCAGTTCCGCATC 59.465 55.000 0.00 0.00 30.46 3.91
990 1009 0.249120 CACTACCCAGTTCCGCATCA 59.751 55.000 0.00 0.00 30.46 3.07
991 1010 1.134401 CACTACCCAGTTCCGCATCAT 60.134 52.381 0.00 0.00 30.46 2.45
992 1011 1.559682 ACTACCCAGTTCCGCATCATT 59.440 47.619 0.00 0.00 0.00 2.57
993 1012 2.026262 ACTACCCAGTTCCGCATCATTT 60.026 45.455 0.00 0.00 0.00 2.32
994 1013 1.463674 ACCCAGTTCCGCATCATTTC 58.536 50.000 0.00 0.00 0.00 2.17
995 1014 0.740737 CCCAGTTCCGCATCATTTCC 59.259 55.000 0.00 0.00 0.00 3.13
996 1015 1.683011 CCCAGTTCCGCATCATTTCCT 60.683 52.381 0.00 0.00 0.00 3.36
997 1016 2.421388 CCCAGTTCCGCATCATTTCCTA 60.421 50.000 0.00 0.00 0.00 2.94
998 1017 3.278574 CCAGTTCCGCATCATTTCCTAA 58.721 45.455 0.00 0.00 0.00 2.69
999 1018 3.694072 CCAGTTCCGCATCATTTCCTAAA 59.306 43.478 0.00 0.00 0.00 1.85
1000 1019 4.157656 CCAGTTCCGCATCATTTCCTAAAA 59.842 41.667 0.00 0.00 0.00 1.52
1001 1020 5.163519 CCAGTTCCGCATCATTTCCTAAAAT 60.164 40.000 0.00 0.00 35.43 1.82
1030 1049 9.981114 TGATCTCATTATTAACTATTCTCGCAA 57.019 29.630 0.00 0.00 0.00 4.85
1034 1053 9.651718 CTCATTATTAACTATTCTCGCAAAACC 57.348 33.333 0.00 0.00 0.00 3.27
1035 1054 8.332464 TCATTATTAACTATTCTCGCAAAACCG 58.668 33.333 0.00 0.00 0.00 4.44
1036 1055 2.894307 AACTATTCTCGCAAAACCGC 57.106 45.000 0.00 0.00 0.00 5.68
1037 1056 2.094762 ACTATTCTCGCAAAACCGCT 57.905 45.000 0.00 0.00 0.00 5.52
1038 1057 2.000447 ACTATTCTCGCAAAACCGCTC 59.000 47.619 0.00 0.00 0.00 5.03
1039 1058 1.327764 CTATTCTCGCAAAACCGCTCC 59.672 52.381 0.00 0.00 0.00 4.70
1040 1059 0.605319 ATTCTCGCAAAACCGCTCCA 60.605 50.000 0.00 0.00 0.00 3.86
1041 1060 1.503818 TTCTCGCAAAACCGCTCCAC 61.504 55.000 0.00 0.00 0.00 4.02
1042 1061 2.203084 TCGCAAAACCGCTCCACA 60.203 55.556 0.00 0.00 0.00 4.17
1043 1062 2.175184 CTCGCAAAACCGCTCCACAG 62.175 60.000 0.00 0.00 0.00 3.66
1044 1063 2.250939 CGCAAAACCGCTCCACAGA 61.251 57.895 0.00 0.00 0.00 3.41
1045 1064 1.781025 CGCAAAACCGCTCCACAGAA 61.781 55.000 0.00 0.00 0.00 3.02
1046 1065 0.317854 GCAAAACCGCTCCACAGAAC 60.318 55.000 0.00 0.00 0.00 3.01
1047 1066 0.310854 CAAAACCGCTCCACAGAACC 59.689 55.000 0.00 0.00 0.00 3.62
1048 1067 1.164041 AAAACCGCTCCACAGAACCG 61.164 55.000 0.00 0.00 0.00 4.44
1049 1068 4.681978 ACCGCTCCACAGAACCGC 62.682 66.667 0.00 0.00 0.00 5.68
1050 1069 4.379243 CCGCTCCACAGAACCGCT 62.379 66.667 0.00 0.00 0.00 5.52
1061 1080 3.201726 CAGAACCGCTGTTAACCATTG 57.798 47.619 2.48 0.00 39.85 2.82
1062 1081 2.095263 CAGAACCGCTGTTAACCATTGG 60.095 50.000 2.48 0.00 39.85 3.16
1063 1082 1.883926 GAACCGCTGTTAACCATTGGT 59.116 47.619 1.37 1.37 33.60 3.67
1064 1083 1.530323 ACCGCTGTTAACCATTGGTC 58.470 50.000 9.22 0.00 33.12 4.02
1065 1084 0.446222 CCGCTGTTAACCATTGGTCG 59.554 55.000 9.22 7.07 33.12 4.79
1066 1085 1.153353 CGCTGTTAACCATTGGTCGT 58.847 50.000 9.22 0.00 33.12 4.34
1067 1086 1.533731 CGCTGTTAACCATTGGTCGTT 59.466 47.619 9.22 0.00 33.12 3.85
1068 1087 2.664424 CGCTGTTAACCATTGGTCGTTG 60.664 50.000 9.22 0.57 33.12 4.10
1069 1088 2.550606 GCTGTTAACCATTGGTCGTTGA 59.449 45.455 9.22 0.00 33.12 3.18
1070 1089 3.364964 GCTGTTAACCATTGGTCGTTGAG 60.365 47.826 9.22 3.47 33.12 3.02
1071 1090 3.142951 TGTTAACCATTGGTCGTTGAGG 58.857 45.455 9.22 0.00 33.12 3.86
1072 1091 3.181453 TGTTAACCATTGGTCGTTGAGGA 60.181 43.478 9.22 0.00 33.12 3.71
1073 1092 2.185004 AACCATTGGTCGTTGAGGAG 57.815 50.000 9.22 0.00 33.12 3.69
1074 1093 0.324943 ACCATTGGTCGTTGAGGAGG 59.675 55.000 1.37 0.00 0.00 4.30
1075 1094 1.026718 CCATTGGTCGTTGAGGAGGC 61.027 60.000 0.00 0.00 0.00 4.70
1076 1095 1.079127 ATTGGTCGTTGAGGAGGCG 60.079 57.895 0.00 0.00 0.00 5.52
1077 1096 1.827399 ATTGGTCGTTGAGGAGGCGT 61.827 55.000 0.00 0.00 0.00 5.68
1078 1097 1.180456 TTGGTCGTTGAGGAGGCGTA 61.180 55.000 0.00 0.00 0.00 4.42
1079 1098 0.968901 TGGTCGTTGAGGAGGCGTAT 60.969 55.000 0.00 0.00 0.00 3.06
1080 1099 0.175073 GGTCGTTGAGGAGGCGTATT 59.825 55.000 0.00 0.00 0.00 1.89
1081 1100 1.557651 GTCGTTGAGGAGGCGTATTC 58.442 55.000 0.00 0.00 0.00 1.75
1082 1101 1.134560 GTCGTTGAGGAGGCGTATTCT 59.865 52.381 0.00 0.00 0.00 2.40
1083 1102 1.404391 TCGTTGAGGAGGCGTATTCTC 59.596 52.381 0.00 0.00 0.00 2.87
1084 1103 1.134367 CGTTGAGGAGGCGTATTCTCA 59.866 52.381 0.00 0.00 34.84 3.27
1085 1104 2.416836 CGTTGAGGAGGCGTATTCTCAA 60.417 50.000 8.22 8.22 41.96 3.02
1086 1105 3.596214 GTTGAGGAGGCGTATTCTCAAA 58.404 45.455 12.55 0.00 44.52 2.69
1087 1106 3.526931 TGAGGAGGCGTATTCTCAAAG 57.473 47.619 0.00 0.00 33.87 2.77
1088 1107 2.168521 TGAGGAGGCGTATTCTCAAAGG 59.831 50.000 0.00 0.00 33.87 3.11
1089 1108 2.431057 GAGGAGGCGTATTCTCAAAGGA 59.569 50.000 0.00 0.00 33.18 3.36
1090 1109 2.168728 AGGAGGCGTATTCTCAAAGGAC 59.831 50.000 0.00 0.00 33.18 3.85
1091 1110 2.552031 GAGGCGTATTCTCAAAGGACC 58.448 52.381 0.00 0.00 0.00 4.46
1092 1111 1.209747 AGGCGTATTCTCAAAGGACCC 59.790 52.381 0.00 0.00 0.00 4.46
1093 1112 1.065709 GGCGTATTCTCAAAGGACCCA 60.066 52.381 0.00 0.00 0.00 4.51
1094 1113 2.421529 GGCGTATTCTCAAAGGACCCAT 60.422 50.000 0.00 0.00 0.00 4.00
1095 1114 3.181458 GGCGTATTCTCAAAGGACCCATA 60.181 47.826 0.00 0.00 0.00 2.74
1096 1115 4.505039 GGCGTATTCTCAAAGGACCCATAT 60.505 45.833 0.00 0.00 0.00 1.78
1097 1116 4.691216 GCGTATTCTCAAAGGACCCATATC 59.309 45.833 0.00 0.00 0.00 1.63
1098 1117 5.511545 GCGTATTCTCAAAGGACCCATATCT 60.512 44.000 0.00 0.00 0.00 1.98
1099 1118 6.295123 GCGTATTCTCAAAGGACCCATATCTA 60.295 42.308 0.00 0.00 0.00 1.98
1100 1119 7.091443 CGTATTCTCAAAGGACCCATATCTAC 58.909 42.308 0.00 0.00 0.00 2.59
1101 1120 7.039644 CGTATTCTCAAAGGACCCATATCTACT 60.040 40.741 0.00 0.00 0.00 2.57
1102 1121 6.485830 TTCTCAAAGGACCCATATCTACTG 57.514 41.667 0.00 0.00 0.00 2.74
1103 1122 4.345257 TCTCAAAGGACCCATATCTACTGC 59.655 45.833 0.00 0.00 0.00 4.40
1104 1123 4.298626 TCAAAGGACCCATATCTACTGCT 58.701 43.478 0.00 0.00 0.00 4.24
1105 1124 4.101585 TCAAAGGACCCATATCTACTGCTG 59.898 45.833 0.00 0.00 0.00 4.41
1106 1125 3.336509 AGGACCCATATCTACTGCTGT 57.663 47.619 0.66 0.66 0.00 4.40
1107 1126 2.968574 AGGACCCATATCTACTGCTGTG 59.031 50.000 6.48 0.00 0.00 3.66
1108 1127 2.700897 GGACCCATATCTACTGCTGTGT 59.299 50.000 6.48 0.00 0.00 3.72
1109 1128 3.134804 GGACCCATATCTACTGCTGTGTT 59.865 47.826 6.48 0.00 0.00 3.32
1110 1129 4.344102 GGACCCATATCTACTGCTGTGTTA 59.656 45.833 6.48 0.00 0.00 2.41
1111 1130 5.163343 GGACCCATATCTACTGCTGTGTTAA 60.163 44.000 6.48 0.00 0.00 2.01
1112 1131 6.464465 GGACCCATATCTACTGCTGTGTTAAT 60.464 42.308 6.48 0.00 0.00 1.40
1113 1132 6.291377 ACCCATATCTACTGCTGTGTTAATG 58.709 40.000 6.48 5.47 0.00 1.90
1114 1133 5.702670 CCCATATCTACTGCTGTGTTAATGG 59.297 44.000 6.48 12.92 0.00 3.16
1115 1134 5.702670 CCATATCTACTGCTGTGTTAATGGG 59.297 44.000 6.48 0.00 0.00 4.00
1116 1135 3.627395 TCTACTGCTGTGTTAATGGGG 57.373 47.619 6.48 0.00 0.00 4.96
1117 1136 2.238646 TCTACTGCTGTGTTAATGGGGG 59.761 50.000 6.48 0.00 0.00 5.40
1118 1137 0.611896 ACTGCTGTGTTAATGGGGGC 60.612 55.000 0.00 0.00 0.00 5.80
1119 1138 1.656818 CTGCTGTGTTAATGGGGGCG 61.657 60.000 0.00 0.00 0.00 6.13
1120 1139 1.677633 GCTGTGTTAATGGGGGCGT 60.678 57.895 0.00 0.00 0.00 5.68
1121 1140 1.933115 GCTGTGTTAATGGGGGCGTG 61.933 60.000 0.00 0.00 0.00 5.34
1122 1141 1.303724 TGTGTTAATGGGGGCGTGG 60.304 57.895 0.00 0.00 0.00 4.94
1123 1142 1.303806 GTGTTAATGGGGGCGTGGT 60.304 57.895 0.00 0.00 0.00 4.16
1124 1143 0.896479 GTGTTAATGGGGGCGTGGTT 60.896 55.000 0.00 0.00 0.00 3.67
1125 1144 0.178958 TGTTAATGGGGGCGTGGTTT 60.179 50.000 0.00 0.00 0.00 3.27
1126 1145 0.245266 GTTAATGGGGGCGTGGTTTG 59.755 55.000 0.00 0.00 0.00 2.93
1127 1146 0.900647 TTAATGGGGGCGTGGTTTGG 60.901 55.000 0.00 0.00 0.00 3.28
1128 1147 2.082836 TAATGGGGGCGTGGTTTGGT 62.083 55.000 0.00 0.00 0.00 3.67
1129 1148 2.082836 AATGGGGGCGTGGTTTGGTA 62.083 55.000 0.00 0.00 0.00 3.25
1130 1149 2.082836 ATGGGGGCGTGGTTTGGTAA 62.083 55.000 0.00 0.00 0.00 2.85
1131 1150 1.304630 GGGGGCGTGGTTTGGTAAT 60.305 57.895 0.00 0.00 0.00 1.89
1132 1151 0.034283 GGGGGCGTGGTTTGGTAATA 60.034 55.000 0.00 0.00 0.00 0.98
1133 1152 1.097232 GGGGCGTGGTTTGGTAATAC 58.903 55.000 0.00 0.00 0.00 1.89
1134 1153 0.728542 GGGCGTGGTTTGGTAATACG 59.271 55.000 0.00 0.00 37.77 3.06
1137 1156 1.440708 CGTGGTTTGGTAATACGCCA 58.559 50.000 0.00 0.00 0.00 5.69
1138 1157 1.805345 CGTGGTTTGGTAATACGCCAA 59.195 47.619 0.00 0.00 43.51 4.52
1139 1158 2.420722 CGTGGTTTGGTAATACGCCAAT 59.579 45.455 0.00 0.00 44.44 3.16
1140 1159 3.119779 CGTGGTTTGGTAATACGCCAATT 60.120 43.478 0.00 0.00 44.44 2.32
1141 1160 4.616373 CGTGGTTTGGTAATACGCCAATTT 60.616 41.667 0.00 0.00 44.44 1.82
1142 1161 4.623595 GTGGTTTGGTAATACGCCAATTTG 59.376 41.667 0.00 0.00 44.44 2.32
1143 1162 4.177783 GGTTTGGTAATACGCCAATTTGG 58.822 43.478 11.27 11.27 44.44 3.28
1177 1196 8.655935 AGTGGATAAAATGATTTCTTTCACCT 57.344 30.769 7.47 0.00 0.00 4.00
1178 1197 8.743714 AGTGGATAAAATGATTTCTTTCACCTC 58.256 33.333 7.47 0.00 0.00 3.85
1179 1198 8.522830 GTGGATAAAATGATTTCTTTCACCTCA 58.477 33.333 0.00 0.00 0.00 3.86
1180 1199 8.522830 TGGATAAAATGATTTCTTTCACCTCAC 58.477 33.333 0.00 0.00 0.00 3.51
1181 1200 8.522830 GGATAAAATGATTTCTTTCACCTCACA 58.477 33.333 0.00 0.00 0.00 3.58
1182 1201 9.912634 GATAAAATGATTTCTTTCACCTCACAA 57.087 29.630 0.00 0.00 0.00 3.33
1184 1203 8.822652 AAAATGATTTCTTTCACCTCACAATC 57.177 30.769 0.00 0.00 0.00 2.67
1185 1204 5.964958 TGATTTCTTTCACCTCACAATCC 57.035 39.130 0.00 0.00 0.00 3.01
1186 1205 4.766891 TGATTTCTTTCACCTCACAATCCC 59.233 41.667 0.00 0.00 0.00 3.85
1187 1206 3.874383 TTCTTTCACCTCACAATCCCA 57.126 42.857 0.00 0.00 0.00 4.37
1188 1207 3.874383 TCTTTCACCTCACAATCCCAA 57.126 42.857 0.00 0.00 0.00 4.12
1189 1208 4.177537 TCTTTCACCTCACAATCCCAAA 57.822 40.909 0.00 0.00 0.00 3.28
1190 1209 4.739793 TCTTTCACCTCACAATCCCAAAT 58.260 39.130 0.00 0.00 0.00 2.32
1191 1210 5.886609 TCTTTCACCTCACAATCCCAAATA 58.113 37.500 0.00 0.00 0.00 1.40
1192 1211 6.310941 TCTTTCACCTCACAATCCCAAATAA 58.689 36.000 0.00 0.00 0.00 1.40
1193 1212 6.953520 TCTTTCACCTCACAATCCCAAATAAT 59.046 34.615 0.00 0.00 0.00 1.28
1194 1213 7.454380 TCTTTCACCTCACAATCCCAAATAATT 59.546 33.333 0.00 0.00 0.00 1.40
1195 1214 6.773976 TCACCTCACAATCCCAAATAATTC 57.226 37.500 0.00 0.00 0.00 2.17
1196 1215 5.356751 TCACCTCACAATCCCAAATAATTCG 59.643 40.000 0.00 0.00 0.00 3.34
1197 1216 4.097892 ACCTCACAATCCCAAATAATTCGC 59.902 41.667 0.00 0.00 0.00 4.70
1198 1217 4.339247 CCTCACAATCCCAAATAATTCGCT 59.661 41.667 0.00 0.00 0.00 4.93
1199 1218 5.163519 CCTCACAATCCCAAATAATTCGCTT 60.164 40.000 0.00 0.00 0.00 4.68
1200 1219 6.039270 CCTCACAATCCCAAATAATTCGCTTA 59.961 38.462 0.00 0.00 0.00 3.09
1201 1220 7.026631 TCACAATCCCAAATAATTCGCTTAG 57.973 36.000 0.00 0.00 0.00 2.18
1202 1221 6.039270 TCACAATCCCAAATAATTCGCTTAGG 59.961 38.462 0.00 0.00 0.00 2.69
1203 1222 6.039270 CACAATCCCAAATAATTCGCTTAGGA 59.961 38.462 0.00 0.00 0.00 2.94
1204 1223 6.263168 ACAATCCCAAATAATTCGCTTAGGAG 59.737 38.462 0.00 0.00 0.00 3.69
1205 1224 5.367945 TCCCAAATAATTCGCTTAGGAGT 57.632 39.130 0.00 0.00 0.00 3.85
1206 1225 5.365619 TCCCAAATAATTCGCTTAGGAGTC 58.634 41.667 0.00 0.00 0.00 3.36
1207 1226 5.104693 TCCCAAATAATTCGCTTAGGAGTCA 60.105 40.000 0.00 0.00 0.00 3.41
1208 1227 5.237344 CCCAAATAATTCGCTTAGGAGTCAG 59.763 44.000 0.00 0.00 0.00 3.51
1209 1228 5.817816 CCAAATAATTCGCTTAGGAGTCAGT 59.182 40.000 0.00 0.00 0.00 3.41
1210 1229 6.984474 CCAAATAATTCGCTTAGGAGTCAGTA 59.016 38.462 0.00 0.00 0.00 2.74
1211 1230 7.042658 CCAAATAATTCGCTTAGGAGTCAGTAC 60.043 40.741 0.00 0.00 0.00 2.73
1212 1231 6.710597 ATAATTCGCTTAGGAGTCAGTACA 57.289 37.500 0.00 0.00 0.00 2.90
1213 1232 5.599999 AATTCGCTTAGGAGTCAGTACAT 57.400 39.130 0.00 0.00 0.00 2.29
1214 1233 6.710597 AATTCGCTTAGGAGTCAGTACATA 57.289 37.500 0.00 0.00 0.00 2.29
1215 1234 6.710597 ATTCGCTTAGGAGTCAGTACATAA 57.289 37.500 0.00 0.00 0.00 1.90
1216 1235 6.519679 TTCGCTTAGGAGTCAGTACATAAA 57.480 37.500 0.00 0.00 0.00 1.40
1217 1236 6.132791 TCGCTTAGGAGTCAGTACATAAAG 57.867 41.667 0.00 0.00 0.00 1.85
1218 1237 5.884232 TCGCTTAGGAGTCAGTACATAAAGA 59.116 40.000 0.00 0.00 0.00 2.52
1219 1238 6.546403 TCGCTTAGGAGTCAGTACATAAAGAT 59.454 38.462 0.00 0.00 0.00 2.40
1220 1239 7.068348 TCGCTTAGGAGTCAGTACATAAAGATT 59.932 37.037 0.00 0.00 0.00 2.40
1221 1240 7.707035 CGCTTAGGAGTCAGTACATAAAGATTT 59.293 37.037 0.00 0.00 0.00 2.17
1245 1264 9.474920 TTTAATTTCATTTCTGCGATTTGTTCT 57.525 25.926 0.00 0.00 0.00 3.01
1247 1266 4.685169 TCATTTCTGCGATTTGTTCTCC 57.315 40.909 0.00 0.00 0.00 3.71
1256 1275 5.171476 TGCGATTTGTTCTCCTCTTCTAAG 58.829 41.667 0.00 0.00 0.00 2.18
1257 1276 4.568760 GCGATTTGTTCTCCTCTTCTAAGG 59.431 45.833 0.00 0.00 37.81 2.69
1258 1277 5.725362 CGATTTGTTCTCCTCTTCTAAGGT 58.275 41.667 0.00 0.00 37.69 3.50
1259 1278 6.166982 CGATTTGTTCTCCTCTTCTAAGGTT 58.833 40.000 0.00 0.00 37.69 3.50
1260 1279 7.321153 CGATTTGTTCTCCTCTTCTAAGGTTA 58.679 38.462 0.00 0.00 37.69 2.85
1261 1280 7.982354 CGATTTGTTCTCCTCTTCTAAGGTTAT 59.018 37.037 0.00 0.00 37.69 1.89
1264 1283 7.349412 TGTTCTCCTCTTCTAAGGTTATAGC 57.651 40.000 0.00 0.00 37.69 2.97
1265 1284 7.126733 TGTTCTCCTCTTCTAAGGTTATAGCT 58.873 38.462 0.00 0.00 37.69 3.32
1268 1287 8.240267 TCTCCTCTTCTAAGGTTATAGCTTTC 57.760 38.462 0.00 0.00 37.16 2.62
1269 1288 7.013464 TCTCCTCTTCTAAGGTTATAGCTTTCG 59.987 40.741 0.00 0.00 37.16 3.46
1270 1289 6.606395 TCCTCTTCTAAGGTTATAGCTTTCGT 59.394 38.462 0.00 0.00 37.16 3.85
1272 1291 6.040878 TCTTCTAAGGTTATAGCTTTCGTGC 58.959 40.000 0.00 0.00 37.16 5.34
1276 1295 3.718815 AGGTTATAGCTTTCGTGCTAGC 58.281 45.455 8.10 8.10 46.89 3.42
1277 1296 3.385111 AGGTTATAGCTTTCGTGCTAGCT 59.615 43.478 17.23 0.00 46.89 3.32
1278 1297 4.120589 GGTTATAGCTTTCGTGCTAGCTT 58.879 43.478 17.23 0.00 45.03 3.74
1279 1298 4.209495 GGTTATAGCTTTCGTGCTAGCTTC 59.791 45.833 17.23 8.26 45.03 3.86
1281 1300 2.393271 AGCTTTCGTGCTAGCTTCAT 57.607 45.000 17.23 0.00 45.03 2.57
1282 1301 2.275318 AGCTTTCGTGCTAGCTTCATC 58.725 47.619 17.23 0.78 45.03 2.92
1283 1302 1.005557 GCTTTCGTGCTAGCTTCATCG 60.006 52.381 17.23 12.29 34.57 3.84
1284 1303 2.530177 CTTTCGTGCTAGCTTCATCGA 58.470 47.619 17.23 14.22 0.00 3.59
1285 1304 2.871182 TTCGTGCTAGCTTCATCGAT 57.129 45.000 17.23 0.00 0.00 3.59
1287 1306 1.405463 TCGTGCTAGCTTCATCGATGT 59.595 47.619 24.09 8.32 0.00 3.06
1289 1308 3.066203 TCGTGCTAGCTTCATCGATGTTA 59.934 43.478 24.09 12.96 0.00 2.41
1291 1310 3.491267 GTGCTAGCTTCATCGATGTTACC 59.509 47.826 24.09 11.58 0.00 2.85
1292 1311 3.060602 GCTAGCTTCATCGATGTTACCC 58.939 50.000 24.09 9.99 0.00 3.69
1293 1312 3.492656 GCTAGCTTCATCGATGTTACCCA 60.493 47.826 24.09 1.50 0.00 4.51
1294 1313 2.906354 AGCTTCATCGATGTTACCCAC 58.094 47.619 24.09 8.78 0.00 4.61
1295 1314 1.940613 GCTTCATCGATGTTACCCACC 59.059 52.381 24.09 3.21 0.00 4.61
1296 1315 2.679639 GCTTCATCGATGTTACCCACCA 60.680 50.000 24.09 0.00 0.00 4.17
1299 1318 4.229304 TCATCGATGTTACCCACCAAAT 57.771 40.909 24.09 0.00 0.00 2.32
1303 1322 6.659668 TCATCGATGTTACCCACCAAATAAAA 59.340 34.615 24.09 0.00 0.00 1.52
1304 1323 6.896021 TCGATGTTACCCACCAAATAAAAA 57.104 33.333 0.00 0.00 0.00 1.94
1305 1324 6.915349 TCGATGTTACCCACCAAATAAAAAG 58.085 36.000 0.00 0.00 0.00 2.27
1306 1325 5.575218 CGATGTTACCCACCAAATAAAAAGC 59.425 40.000 0.00 0.00 0.00 3.51
1307 1326 5.216614 TGTTACCCACCAAATAAAAAGCC 57.783 39.130 0.00 0.00 0.00 4.35
1308 1327 4.902448 TGTTACCCACCAAATAAAAAGCCT 59.098 37.500 0.00 0.00 0.00 4.58
1309 1328 5.221541 TGTTACCCACCAAATAAAAAGCCTG 60.222 40.000 0.00 0.00 0.00 4.85
1310 1329 3.313791 ACCCACCAAATAAAAAGCCTGT 58.686 40.909 0.00 0.00 0.00 4.00
1311 1330 3.714280 ACCCACCAAATAAAAAGCCTGTT 59.286 39.130 0.00 0.00 0.00 3.16
1312 1331 4.202315 ACCCACCAAATAAAAAGCCTGTTC 60.202 41.667 0.00 0.00 0.00 3.18
1315 1334 4.990426 CACCAAATAAAAAGCCTGTTCAGG 59.010 41.667 13.88 13.88 0.00 3.86
1316 1335 4.653801 ACCAAATAAAAAGCCTGTTCAGGT 59.346 37.500 18.42 4.79 0.00 4.00
1317 1336 5.836358 ACCAAATAAAAAGCCTGTTCAGGTA 59.164 36.000 18.42 4.97 0.00 3.08
1318 1337 6.015434 ACCAAATAAAAAGCCTGTTCAGGTAG 60.015 38.462 18.42 0.00 0.00 3.18
1319 1338 6.389906 CAAATAAAAAGCCTGTTCAGGTAGG 58.610 40.000 18.42 0.00 37.14 3.18
1323 1342 3.388841 CCTGTTCAGGTAGGCCGT 58.611 61.111 10.40 0.00 40.50 5.68
1325 1344 1.258445 CCTGTTCAGGTAGGCCGTCT 61.258 60.000 10.40 0.00 40.50 4.18
1327 1346 1.822990 CTGTTCAGGTAGGCCGTCTAA 59.177 52.381 0.00 0.00 40.50 2.10
1329 1348 2.835764 TGTTCAGGTAGGCCGTCTAATT 59.164 45.455 0.00 0.00 40.50 1.40
1337 1445 3.821421 AGGCCGTCTAATTCTAGTTGG 57.179 47.619 0.00 0.00 0.00 3.77
1352 1460 1.302192 TTGGCTGCGTTAGGTGGAC 60.302 57.895 0.00 0.00 0.00 4.02
1353 1461 2.436115 GGCTGCGTTAGGTGGACC 60.436 66.667 0.00 0.00 0.00 4.46
1354 1462 2.436115 GCTGCGTTAGGTGGACCC 60.436 66.667 0.00 0.00 36.42 4.46
1365 1473 2.132686 AGGTGGACCCTGTTTTAGTGT 58.867 47.619 0.00 0.00 44.08 3.55
1378 1486 8.340443 CCCTGTTTTAGTGTGTTAGTTTCTTAC 58.660 37.037 0.00 0.00 0.00 2.34
1447 1555 3.518634 AAACGCAGAAAGAAAGGCAAA 57.481 38.095 0.00 0.00 0.00 3.68
1449 1557 2.809446 ACGCAGAAAGAAAGGCAAAAC 58.191 42.857 0.00 0.00 0.00 2.43
1477 1585 0.824759 GGGCTAATCGACTGACCACT 59.175 55.000 1.59 0.00 0.00 4.00
1484 1592 2.433868 TCGACTGACCACTACTTTGC 57.566 50.000 0.00 0.00 0.00 3.68
1496 1604 3.555956 CACTACTTTGCGTCAGTCAGTTT 59.444 43.478 0.00 0.00 0.00 2.66
1500 1608 3.190535 ACTTTGCGTCAGTCAGTTTGTTT 59.809 39.130 0.00 0.00 0.00 2.83
1536 1644 6.618287 TGTCTTTTGTTTCTGTCAATCGAT 57.382 33.333 0.00 0.00 0.00 3.59
1561 1669 1.676014 CCATTTCTGGGGTCAGTCGAC 60.676 57.143 7.70 7.70 41.59 4.20
1577 1685 1.003928 TCGACTGACAGGTAGCCACTA 59.996 52.381 7.51 0.00 0.00 2.74
1610 1718 3.565307 TCTGAAGAACAACCCTTGCAAT 58.435 40.909 0.00 0.00 0.00 3.56
1640 1748 8.161699 TGGACTTAAATCCAAGAAAGTGTTAC 57.838 34.615 2.45 0.00 46.08 2.50
1668 1776 1.837538 TTTTCCGTTGCTTCCGCTCG 61.838 55.000 0.00 0.00 36.97 5.03
1680 1788 3.716006 CGCTCGGCCACACAGTTG 61.716 66.667 2.24 0.00 0.00 3.16
1697 1805 4.512914 GATGCACTGGCCCTCCCC 62.513 72.222 0.00 0.00 40.13 4.81
1707 1815 3.049080 GCCCTCCCCATCACTGTCC 62.049 68.421 0.00 0.00 0.00 4.02
1716 1824 0.457851 CATCACTGTCCGAGTCCCTC 59.542 60.000 0.00 0.00 29.75 4.30
1732 1840 1.594293 CTCTGTGGTTTGCCGTCGT 60.594 57.895 0.00 0.00 37.67 4.34
1740 1848 0.584396 GTTTGCCGTCGTCATTGTCA 59.416 50.000 0.00 0.00 0.00 3.58
1749 1857 2.673368 GTCGTCATTGTCATCAGGGTTC 59.327 50.000 0.00 0.00 0.00 3.62
1755 1863 1.444933 TGTCATCAGGGTTCCCTTGT 58.555 50.000 7.79 0.00 33.50 3.16
1796 1904 2.677228 CAAATCCACCGGCCTCCT 59.323 61.111 0.00 0.00 0.00 3.69
1847 1956 2.792947 CGCCGTATACTGCCACCCT 61.793 63.158 12.94 0.00 0.00 4.34
1873 1995 2.224378 CCATCGTACCGTCCTCCTACTA 60.224 54.545 0.00 0.00 0.00 1.82
1888 2010 0.883153 TACTACTGAAACGCGGCAGA 59.117 50.000 25.52 12.54 36.07 4.26
2056 2179 0.243095 GGACTAAGACGAACCGCACT 59.757 55.000 0.00 0.00 0.00 4.40
2197 2323 3.982576 ACGGTGTGGTTTTCATCTTTC 57.017 42.857 0.00 0.00 0.00 2.62
2200 2326 4.340950 ACGGTGTGGTTTTCATCTTTCAAT 59.659 37.500 0.00 0.00 0.00 2.57
2203 2329 6.515832 GGTGTGGTTTTCATCTTTCAATCTT 58.484 36.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 5.763204 CCAGGAAGTATGTTGTTACAGTGTT 59.237 40.000 0.00 0.00 37.77 3.32
130 131 5.071250 TCCAGGAAGTATGTTGTTACAGTGT 59.929 40.000 0.00 0.00 37.77 3.55
145 146 4.292306 AGGACACCATATTTTCCAGGAAGT 59.708 41.667 1.07 0.00 0.00 3.01
154 155 8.745590 GGTAAACATACAAGGACACCATATTTT 58.254 33.333 0.00 0.00 0.00 1.82
161 162 4.901868 TCAGGTAAACATACAAGGACACC 58.098 43.478 0.00 0.00 0.00 4.16
162 163 6.485648 ACTTTCAGGTAAACATACAAGGACAC 59.514 38.462 0.00 0.00 0.00 3.67
166 167 7.504924 TTCACTTTCAGGTAAACATACAAGG 57.495 36.000 0.00 0.00 0.00 3.61
173 174 9.883142 AATTGATTTTTCACTTTCAGGTAAACA 57.117 25.926 0.00 0.00 0.00 2.83
228 229 6.176975 TGTTCATTTTTAGGTGCATCTACG 57.823 37.500 6.09 0.00 0.00 3.51
241 242 9.715121 AAAGTATGCTTGATCATGTTCATTTTT 57.285 25.926 7.29 7.53 34.71 1.94
245 246 7.148188 ACGAAAAGTATGCTTGATCATGTTCAT 60.148 33.333 7.29 8.23 34.71 2.57
246 247 6.149308 ACGAAAAGTATGCTTGATCATGTTCA 59.851 34.615 10.05 2.22 34.71 3.18
255 256 5.411361 ACTGCATTACGAAAAGTATGCTTGA 59.589 36.000 0.00 0.00 38.95 3.02
270 271 5.457140 TCCGTTTTGAATGAACTGCATTAC 58.543 37.500 0.00 0.00 46.90 1.89
325 326 1.133199 TGCAGAACACCCCCAGAAAAT 60.133 47.619 0.00 0.00 0.00 1.82
389 390 9.793252 GGATATGCAATTACAATTAAGCCATAG 57.207 33.333 0.00 0.00 0.00 2.23
427 428 3.450457 AGCTTGGACATCCTGAGTAGAAG 59.550 47.826 0.00 0.00 36.82 2.85
429 430 3.107402 AGCTTGGACATCCTGAGTAGA 57.893 47.619 0.00 0.00 36.82 2.59
461 462 9.926158 TGCATTGAATGTAGTTGTGATAATTTT 57.074 25.926 7.05 0.00 0.00 1.82
467 468 4.460034 TGCTGCATTGAATGTAGTTGTGAT 59.540 37.500 21.34 0.00 43.73 3.06
468 469 3.819902 TGCTGCATTGAATGTAGTTGTGA 59.180 39.130 21.34 2.24 43.73 3.58
488 489 1.135460 GCTTGTCCTGAGAAATGCTGC 60.135 52.381 0.00 0.00 29.64 5.25
491 492 2.555757 AGTTGCTTGTCCTGAGAAATGC 59.444 45.455 0.00 0.00 32.26 3.56
516 517 9.796120 CAGAAAGTTAGTTTGTTGGTTTATGAA 57.204 29.630 0.00 0.00 0.00 2.57
518 519 8.410141 TCCAGAAAGTTAGTTTGTTGGTTTATG 58.590 33.333 10.52 0.00 33.77 1.90
521 522 6.844097 TCCAGAAAGTTAGTTTGTTGGTTT 57.156 33.333 10.52 0.00 33.77 3.27
522 523 6.844097 TTCCAGAAAGTTAGTTTGTTGGTT 57.156 33.333 10.52 0.00 33.77 3.67
523 524 6.844097 TTTCCAGAAAGTTAGTTTGTTGGT 57.156 33.333 10.52 0.00 33.77 3.67
524 525 6.200854 GCATTTCCAGAAAGTTAGTTTGTTGG 59.799 38.462 0.00 6.41 33.51 3.77
525 526 6.756074 TGCATTTCCAGAAAGTTAGTTTGTTG 59.244 34.615 0.00 0.00 33.32 3.33
528 529 9.643693 AATATGCATTTCCAGAAAGTTAGTTTG 57.356 29.630 3.54 0.00 33.32 2.93
530 531 9.643693 CAAATATGCATTTCCAGAAAGTTAGTT 57.356 29.630 3.54 0.00 31.82 2.24
543 562 7.471721 TGTGCTAGTGTACAAATATGCATTTC 58.528 34.615 3.54 0.00 35.92 2.17
562 581 6.542735 TGGTGTTGTACAAAGTTATTGTGCTA 59.457 34.615 10.51 1.25 36.26 3.49
569 588 8.458573 TGAGAAATGGTGTTGTACAAAGTTAT 57.541 30.769 10.51 0.00 0.00 1.89
582 601 6.713762 TTTTGAACAGATGAGAAATGGTGT 57.286 33.333 0.00 0.00 0.00 4.16
598 617 3.735746 GGTGTGCTATGCTGTTTTTGAAC 59.264 43.478 0.00 0.00 0.00 3.18
601 620 3.311106 CTGGTGTGCTATGCTGTTTTTG 58.689 45.455 0.00 0.00 0.00 2.44
609 628 0.379669 GATGTGCTGGTGTGCTATGC 59.620 55.000 0.00 0.00 0.00 3.14
612 631 0.250234 GAGGATGTGCTGGTGTGCTA 59.750 55.000 0.00 0.00 0.00 3.49
614 633 0.250234 TAGAGGATGTGCTGGTGTGC 59.750 55.000 0.00 0.00 0.00 4.57
645 664 2.432510 TGCCGGTTTCCAAAAACTCATT 59.567 40.909 1.90 0.00 43.55 2.57
654 673 2.124109 TGCTGTGCCGGTTTCCAA 60.124 55.556 1.90 0.00 0.00 3.53
657 676 2.348605 TTTGCTGCTGTGCCGGTTTC 62.349 55.000 1.90 0.00 0.00 2.78
663 682 0.954452 AGTTAGTTTGCTGCTGTGCC 59.046 50.000 0.00 0.00 0.00 5.01
711 730 6.015603 TCCATGAGAGATGAGACACATATGAC 60.016 42.308 10.38 0.64 39.56 3.06
715 734 5.203528 TGTCCATGAGAGATGAGACACATA 58.796 41.667 0.00 0.00 39.56 2.29
720 739 3.450457 ACCTTGTCCATGAGAGATGAGAC 59.550 47.826 0.00 0.00 0.00 3.36
724 743 3.900966 TGACCTTGTCCATGAGAGATG 57.099 47.619 0.00 0.00 0.00 2.90
725 744 4.099633 TCTTGACCTTGTCCATGAGAGAT 58.900 43.478 0.00 0.00 0.00 2.75
726 745 3.510459 TCTTGACCTTGTCCATGAGAGA 58.490 45.455 0.00 0.00 0.00 3.10
727 746 3.513119 TCTCTTGACCTTGTCCATGAGAG 59.487 47.826 0.00 0.00 31.79 3.20
728 747 3.510459 TCTCTTGACCTTGTCCATGAGA 58.490 45.455 0.00 0.00 30.34 3.27
729 748 3.969287 TCTCTTGACCTTGTCCATGAG 57.031 47.619 0.00 0.00 0.00 2.90
730 749 4.705110 TTTCTCTTGACCTTGTCCATGA 57.295 40.909 0.00 0.00 0.00 3.07
731 750 5.972107 AATTTCTCTTGACCTTGTCCATG 57.028 39.130 0.00 0.00 0.00 3.66
732 751 6.015095 GGAAAATTTCTCTTGACCTTGTCCAT 60.015 38.462 5.65 0.00 0.00 3.41
741 760 9.617975 CAGTAAATCAGGAAAATTTCTCTTGAC 57.382 33.333 5.65 0.00 0.00 3.18
747 766 8.940397 TCCTTCAGTAAATCAGGAAAATTTCT 57.060 30.769 5.65 0.00 32.19 2.52
749 768 8.940397 TCTCCTTCAGTAAATCAGGAAAATTT 57.060 30.769 0.00 0.00 34.93 1.82
751 770 7.922382 TCTCTCCTTCAGTAAATCAGGAAAAT 58.078 34.615 0.00 0.00 34.93 1.82
762 781 4.082190 CCATCACGTTCTCTCCTTCAGTAA 60.082 45.833 0.00 0.00 0.00 2.24
767 786 1.066858 TGCCATCACGTTCTCTCCTTC 60.067 52.381 0.00 0.00 0.00 3.46
771 790 5.053145 AGATAATTGCCATCACGTTCTCTC 58.947 41.667 0.00 0.00 0.00 3.20
772 791 5.028549 AGATAATTGCCATCACGTTCTCT 57.971 39.130 0.00 0.00 0.00 3.10
776 795 5.295292 CAGAGAAGATAATTGCCATCACGTT 59.705 40.000 0.00 0.00 0.00 3.99
784 803 6.259829 GGAAGACTTCAGAGAAGATAATTGCC 59.740 42.308 16.85 2.59 0.00 4.52
785 804 7.011295 CAGGAAGACTTCAGAGAAGATAATTGC 59.989 40.741 16.85 7.32 0.00 3.56
842 861 7.782644 TCAAAGGTAACAATTATAATCCCCCAG 59.217 37.037 0.00 0.00 41.41 4.45
858 877 7.222611 TCGTAGTACACAAAGTTCAAAGGTAAC 59.777 37.037 0.38 0.00 0.00 2.50
883 902 4.751767 AGAGACAAACCTGGAGATGATC 57.248 45.455 0.00 0.00 0.00 2.92
884 903 4.782156 AGAAGAGACAAACCTGGAGATGAT 59.218 41.667 0.00 0.00 0.00 2.45
904 923 5.124776 TCAAGAAAAAGAGCAAAACCGAGAA 59.875 36.000 0.00 0.00 0.00 2.87
916 935 7.603404 AGATGTCAGATCTGTCAAGAAAAAGAG 59.397 37.037 23.35 0.00 35.59 2.85
922 941 5.990120 TGAGATGTCAGATCTGTCAAGAA 57.010 39.130 23.35 9.48 35.59 2.52
938 957 9.664332 ATCCGGAAGAAATATAATTCTGAGATG 57.336 33.333 9.01 0.00 39.54 2.90
954 973 5.011738 GGGTAGTGATATTGATCCGGAAGAA 59.988 44.000 9.01 4.30 0.00 2.52
955 974 4.527038 GGGTAGTGATATTGATCCGGAAGA 59.473 45.833 9.01 0.00 0.00 2.87
956 975 4.283467 TGGGTAGTGATATTGATCCGGAAG 59.717 45.833 9.01 0.00 0.00 3.46
957 976 4.228010 TGGGTAGTGATATTGATCCGGAA 58.772 43.478 9.01 0.00 0.00 4.30
958 977 3.832490 CTGGGTAGTGATATTGATCCGGA 59.168 47.826 6.61 6.61 0.00 5.14
960 979 4.873746 ACTGGGTAGTGATATTGATCCG 57.126 45.455 0.00 0.00 35.34 4.18
961 980 5.552178 GGAACTGGGTAGTGATATTGATCC 58.448 45.833 0.00 0.00 37.19 3.36
962 981 5.230942 CGGAACTGGGTAGTGATATTGATC 58.769 45.833 0.00 0.00 37.19 2.92
963 982 4.503296 GCGGAACTGGGTAGTGATATTGAT 60.503 45.833 0.00 0.00 37.19 2.57
964 983 3.181469 GCGGAACTGGGTAGTGATATTGA 60.181 47.826 0.00 0.00 37.19 2.57
965 984 3.131396 GCGGAACTGGGTAGTGATATTG 58.869 50.000 0.00 0.00 37.19 1.90
966 985 2.769663 TGCGGAACTGGGTAGTGATATT 59.230 45.455 0.00 0.00 37.19 1.28
967 986 2.394632 TGCGGAACTGGGTAGTGATAT 58.605 47.619 0.00 0.00 37.19 1.63
968 987 1.855295 TGCGGAACTGGGTAGTGATA 58.145 50.000 0.00 0.00 37.19 2.15
969 988 1.139058 GATGCGGAACTGGGTAGTGAT 59.861 52.381 0.00 0.00 37.19 3.06
970 989 0.535335 GATGCGGAACTGGGTAGTGA 59.465 55.000 0.00 0.00 37.19 3.41
971 990 0.249120 TGATGCGGAACTGGGTAGTG 59.751 55.000 0.00 0.00 37.19 2.74
972 991 1.204146 ATGATGCGGAACTGGGTAGT 58.796 50.000 0.00 0.00 39.32 2.73
973 992 2.332063 AATGATGCGGAACTGGGTAG 57.668 50.000 0.00 0.00 0.00 3.18
974 993 2.639065 GAAATGATGCGGAACTGGGTA 58.361 47.619 0.00 0.00 0.00 3.69
975 994 1.463674 GAAATGATGCGGAACTGGGT 58.536 50.000 0.00 0.00 0.00 4.51
976 995 0.740737 GGAAATGATGCGGAACTGGG 59.259 55.000 0.00 0.00 0.00 4.45
977 996 1.755179 AGGAAATGATGCGGAACTGG 58.245 50.000 0.00 0.00 0.00 4.00
978 997 4.963276 TTTAGGAAATGATGCGGAACTG 57.037 40.909 0.00 0.00 0.00 3.16
1004 1023 9.981114 TTGCGAGAATAGTTAATAATGAGATCA 57.019 29.630 0.00 0.00 0.00 2.92
1008 1027 9.651718 GGTTTTGCGAGAATAGTTAATAATGAG 57.348 33.333 0.00 0.00 0.00 2.90
1009 1028 8.332464 CGGTTTTGCGAGAATAGTTAATAATGA 58.668 33.333 0.00 0.00 0.00 2.57
1010 1029 7.111593 GCGGTTTTGCGAGAATAGTTAATAATG 59.888 37.037 0.00 0.00 0.00 1.90
1011 1030 7.012044 AGCGGTTTTGCGAGAATAGTTAATAAT 59.988 33.333 0.00 0.00 40.67 1.28
1012 1031 6.314400 AGCGGTTTTGCGAGAATAGTTAATAA 59.686 34.615 0.00 0.00 40.67 1.40
1013 1032 5.813672 AGCGGTTTTGCGAGAATAGTTAATA 59.186 36.000 0.00 0.00 40.67 0.98
1014 1033 4.634443 AGCGGTTTTGCGAGAATAGTTAAT 59.366 37.500 0.00 0.00 40.67 1.40
1015 1034 3.998341 AGCGGTTTTGCGAGAATAGTTAA 59.002 39.130 0.00 0.00 40.67 2.01
1016 1035 3.592059 AGCGGTTTTGCGAGAATAGTTA 58.408 40.909 0.00 0.00 40.67 2.24
1017 1036 2.415512 GAGCGGTTTTGCGAGAATAGTT 59.584 45.455 0.00 0.00 40.67 2.24
1018 1037 2.000447 GAGCGGTTTTGCGAGAATAGT 59.000 47.619 0.00 0.00 40.67 2.12
1019 1038 1.327764 GGAGCGGTTTTGCGAGAATAG 59.672 52.381 0.00 0.00 40.67 1.73
1020 1039 1.338294 TGGAGCGGTTTTGCGAGAATA 60.338 47.619 0.00 0.00 40.67 1.75
1021 1040 0.605319 TGGAGCGGTTTTGCGAGAAT 60.605 50.000 0.00 0.00 40.67 2.40
1022 1041 1.227704 TGGAGCGGTTTTGCGAGAA 60.228 52.632 0.00 0.00 40.67 2.87
1023 1042 1.959226 GTGGAGCGGTTTTGCGAGA 60.959 57.895 0.00 0.00 40.67 4.04
1024 1043 2.175184 CTGTGGAGCGGTTTTGCGAG 62.175 60.000 0.00 0.00 40.67 5.03
1025 1044 2.203084 TGTGGAGCGGTTTTGCGA 60.203 55.556 0.00 0.00 40.67 5.10
1026 1045 1.781025 TTCTGTGGAGCGGTTTTGCG 61.781 55.000 0.00 0.00 40.67 4.85
1027 1046 0.317854 GTTCTGTGGAGCGGTTTTGC 60.318 55.000 0.00 0.00 0.00 3.68
1028 1047 0.310854 GGTTCTGTGGAGCGGTTTTG 59.689 55.000 0.00 0.00 0.00 2.44
1029 1048 1.164041 CGGTTCTGTGGAGCGGTTTT 61.164 55.000 0.00 0.00 34.64 2.43
1030 1049 1.597027 CGGTTCTGTGGAGCGGTTT 60.597 57.895 0.00 0.00 34.64 3.27
1031 1050 2.030562 CGGTTCTGTGGAGCGGTT 59.969 61.111 0.00 0.00 34.64 4.44
1032 1051 4.681978 GCGGTTCTGTGGAGCGGT 62.682 66.667 0.00 0.00 38.35 5.68
1033 1052 4.379243 AGCGGTTCTGTGGAGCGG 62.379 66.667 0.00 0.00 38.35 5.52
1034 1053 3.114616 CAGCGGTTCTGTGGAGCG 61.115 66.667 0.00 0.00 38.02 5.03
1041 1060 4.612088 ACCAATGGTTAACAGCGGTTCTG 61.612 47.826 5.22 0.00 40.05 3.02
1042 1061 2.159382 CCAATGGTTAACAGCGGTTCT 58.841 47.619 5.22 0.00 38.45 3.01
1043 1062 1.883926 ACCAATGGTTAACAGCGGTTC 59.116 47.619 5.22 0.00 38.45 3.62
1044 1063 1.883926 GACCAATGGTTAACAGCGGTT 59.116 47.619 6.30 7.54 37.60 4.44
1045 1064 1.530323 GACCAATGGTTAACAGCGGT 58.470 50.000 6.30 7.85 39.53 5.68
1046 1065 0.446222 CGACCAATGGTTAACAGCGG 59.554 55.000 6.30 4.63 35.25 5.52
1047 1066 1.153353 ACGACCAATGGTTAACAGCG 58.847 50.000 6.30 6.90 35.25 5.18
1048 1067 2.550606 TCAACGACCAATGGTTAACAGC 59.449 45.455 6.30 0.00 35.25 4.40
1049 1068 3.188460 CCTCAACGACCAATGGTTAACAG 59.812 47.826 6.30 0.00 35.25 3.16
1050 1069 3.142951 CCTCAACGACCAATGGTTAACA 58.857 45.455 6.30 0.00 35.25 2.41
1051 1070 3.404899 TCCTCAACGACCAATGGTTAAC 58.595 45.455 6.30 0.00 35.25 2.01
1052 1071 3.558321 CCTCCTCAACGACCAATGGTTAA 60.558 47.826 6.30 0.00 35.25 2.01
1053 1072 2.027561 CCTCCTCAACGACCAATGGTTA 60.028 50.000 6.30 0.00 35.25 2.85
1054 1073 1.271379 CCTCCTCAACGACCAATGGTT 60.271 52.381 6.30 0.00 35.25 3.67
1055 1074 0.324943 CCTCCTCAACGACCAATGGT 59.675 55.000 3.74 3.74 39.44 3.55
1056 1075 1.026718 GCCTCCTCAACGACCAATGG 61.027 60.000 0.00 0.00 0.00 3.16
1057 1076 1.361668 CGCCTCCTCAACGACCAATG 61.362 60.000 0.00 0.00 0.00 2.82
1058 1077 1.079127 CGCCTCCTCAACGACCAAT 60.079 57.895 0.00 0.00 0.00 3.16
1059 1078 1.180456 TACGCCTCCTCAACGACCAA 61.180 55.000 0.00 0.00 0.00 3.67
1060 1079 0.968901 ATACGCCTCCTCAACGACCA 60.969 55.000 0.00 0.00 0.00 4.02
1061 1080 0.175073 AATACGCCTCCTCAACGACC 59.825 55.000 0.00 0.00 0.00 4.79
1062 1081 1.134560 AGAATACGCCTCCTCAACGAC 59.865 52.381 0.00 0.00 0.00 4.34
1063 1082 1.404391 GAGAATACGCCTCCTCAACGA 59.596 52.381 0.00 0.00 0.00 3.85
1064 1083 1.134367 TGAGAATACGCCTCCTCAACG 59.866 52.381 0.00 0.00 33.26 4.10
1065 1084 2.961526 TGAGAATACGCCTCCTCAAC 57.038 50.000 0.00 0.00 33.26 3.18
1066 1085 3.369471 CCTTTGAGAATACGCCTCCTCAA 60.369 47.826 0.00 0.00 42.00 3.02
1067 1086 2.168521 CCTTTGAGAATACGCCTCCTCA 59.831 50.000 0.00 0.00 34.25 3.86
1068 1087 2.431057 TCCTTTGAGAATACGCCTCCTC 59.569 50.000 0.00 0.00 0.00 3.71
1069 1088 2.168728 GTCCTTTGAGAATACGCCTCCT 59.831 50.000 0.00 0.00 0.00 3.69
1070 1089 2.552031 GTCCTTTGAGAATACGCCTCC 58.448 52.381 0.00 0.00 0.00 4.30
1071 1090 2.552031 GGTCCTTTGAGAATACGCCTC 58.448 52.381 0.00 0.00 0.00 4.70
1072 1091 1.209747 GGGTCCTTTGAGAATACGCCT 59.790 52.381 0.00 0.00 0.00 5.52
1073 1092 1.065709 TGGGTCCTTTGAGAATACGCC 60.066 52.381 0.00 0.00 0.00 5.68
1074 1093 2.396590 TGGGTCCTTTGAGAATACGC 57.603 50.000 0.00 0.00 0.00 4.42
1075 1094 6.102897 AGATATGGGTCCTTTGAGAATACG 57.897 41.667 0.00 0.00 0.00 3.06
1076 1095 8.091449 CAGTAGATATGGGTCCTTTGAGAATAC 58.909 40.741 0.00 0.00 0.00 1.89
1077 1096 7.256332 GCAGTAGATATGGGTCCTTTGAGAATA 60.256 40.741 0.00 0.00 0.00 1.75
1078 1097 6.465035 GCAGTAGATATGGGTCCTTTGAGAAT 60.465 42.308 0.00 0.00 0.00 2.40
1079 1098 5.163301 GCAGTAGATATGGGTCCTTTGAGAA 60.163 44.000 0.00 0.00 0.00 2.87
1080 1099 4.345257 GCAGTAGATATGGGTCCTTTGAGA 59.655 45.833 0.00 0.00 0.00 3.27
1081 1100 4.346418 AGCAGTAGATATGGGTCCTTTGAG 59.654 45.833 0.00 0.00 0.00 3.02
1082 1101 4.101585 CAGCAGTAGATATGGGTCCTTTGA 59.898 45.833 0.00 0.00 0.00 2.69
1083 1102 4.141620 ACAGCAGTAGATATGGGTCCTTTG 60.142 45.833 0.00 0.00 0.00 2.77
1084 1103 4.040755 ACAGCAGTAGATATGGGTCCTTT 58.959 43.478 0.00 0.00 0.00 3.11
1085 1104 3.389329 CACAGCAGTAGATATGGGTCCTT 59.611 47.826 0.00 0.00 0.00 3.36
1086 1105 2.968574 CACAGCAGTAGATATGGGTCCT 59.031 50.000 0.00 0.00 0.00 3.85
1087 1106 2.700897 ACACAGCAGTAGATATGGGTCC 59.299 50.000 0.00 0.00 0.00 4.46
1088 1107 4.408182 AACACAGCAGTAGATATGGGTC 57.592 45.455 0.00 0.00 0.00 4.46
1089 1108 5.950544 TTAACACAGCAGTAGATATGGGT 57.049 39.130 0.00 0.00 0.00 4.51
1090 1109 5.702670 CCATTAACACAGCAGTAGATATGGG 59.297 44.000 0.00 0.00 0.00 4.00
1091 1110 5.702670 CCCATTAACACAGCAGTAGATATGG 59.297 44.000 0.00 0.00 0.00 2.74
1092 1111 5.702670 CCCCATTAACACAGCAGTAGATATG 59.297 44.000 0.00 0.00 0.00 1.78
1093 1112 5.221925 CCCCCATTAACACAGCAGTAGATAT 60.222 44.000 0.00 0.00 0.00 1.63
1094 1113 4.102524 CCCCCATTAACACAGCAGTAGATA 59.897 45.833 0.00 0.00 0.00 1.98
1095 1114 3.117888 CCCCCATTAACACAGCAGTAGAT 60.118 47.826 0.00 0.00 0.00 1.98
1096 1115 2.238646 CCCCCATTAACACAGCAGTAGA 59.761 50.000 0.00 0.00 0.00 2.59
1097 1116 2.643551 CCCCCATTAACACAGCAGTAG 58.356 52.381 0.00 0.00 0.00 2.57
1098 1117 1.340600 GCCCCCATTAACACAGCAGTA 60.341 52.381 0.00 0.00 0.00 2.74
1099 1118 0.611896 GCCCCCATTAACACAGCAGT 60.612 55.000 0.00 0.00 0.00 4.40
1100 1119 1.656818 CGCCCCCATTAACACAGCAG 61.657 60.000 0.00 0.00 0.00 4.24
1101 1120 1.677300 CGCCCCCATTAACACAGCA 60.677 57.895 0.00 0.00 0.00 4.41
1102 1121 1.677633 ACGCCCCCATTAACACAGC 60.678 57.895 0.00 0.00 0.00 4.40
1103 1122 1.312371 CCACGCCCCCATTAACACAG 61.312 60.000 0.00 0.00 0.00 3.66
1104 1123 1.303724 CCACGCCCCCATTAACACA 60.304 57.895 0.00 0.00 0.00 3.72
1105 1124 0.896479 AACCACGCCCCCATTAACAC 60.896 55.000 0.00 0.00 0.00 3.32
1106 1125 0.178958 AAACCACGCCCCCATTAACA 60.179 50.000 0.00 0.00 0.00 2.41
1107 1126 0.245266 CAAACCACGCCCCCATTAAC 59.755 55.000 0.00 0.00 0.00 2.01
1108 1127 0.900647 CCAAACCACGCCCCCATTAA 60.901 55.000 0.00 0.00 0.00 1.40
1109 1128 1.304547 CCAAACCACGCCCCCATTA 60.305 57.895 0.00 0.00 0.00 1.90
1110 1129 2.082836 TACCAAACCACGCCCCCATT 62.083 55.000 0.00 0.00 0.00 3.16
1111 1130 2.082836 TTACCAAACCACGCCCCCAT 62.083 55.000 0.00 0.00 0.00 4.00
1112 1131 2.082836 ATTACCAAACCACGCCCCCA 62.083 55.000 0.00 0.00 0.00 4.96
1113 1132 0.034283 TATTACCAAACCACGCCCCC 60.034 55.000 0.00 0.00 0.00 5.40
1114 1133 1.097232 GTATTACCAAACCACGCCCC 58.903 55.000 0.00 0.00 0.00 5.80
1115 1134 0.728542 CGTATTACCAAACCACGCCC 59.271 55.000 0.00 0.00 0.00 6.13
1118 1137 1.440708 TGGCGTATTACCAAACCACG 58.559 50.000 0.00 0.00 33.12 4.94
1151 1170 9.753674 AGGTGAAAGAAATCATTTTATCCACTA 57.246 29.630 0.00 0.00 0.00 2.74
1152 1171 8.655935 AGGTGAAAGAAATCATTTTATCCACT 57.344 30.769 0.00 0.00 0.00 4.00
1153 1172 8.522830 TGAGGTGAAAGAAATCATTTTATCCAC 58.477 33.333 0.00 0.00 0.00 4.02
1154 1173 8.522830 GTGAGGTGAAAGAAATCATTTTATCCA 58.477 33.333 0.00 0.00 0.00 3.41
1155 1174 8.522830 TGTGAGGTGAAAGAAATCATTTTATCC 58.477 33.333 0.00 0.00 0.00 2.59
1156 1175 9.912634 TTGTGAGGTGAAAGAAATCATTTTATC 57.087 29.630 0.00 0.00 0.00 1.75
1158 1177 9.912634 GATTGTGAGGTGAAAGAAATCATTTTA 57.087 29.630 0.00 0.00 0.00 1.52
1159 1178 7.874528 GGATTGTGAGGTGAAAGAAATCATTTT 59.125 33.333 0.00 0.00 0.00 1.82
1160 1179 7.381323 GGATTGTGAGGTGAAAGAAATCATTT 58.619 34.615 0.00 0.00 0.00 2.32
1161 1180 6.071165 GGGATTGTGAGGTGAAAGAAATCATT 60.071 38.462 0.00 0.00 0.00 2.57
1162 1181 5.420104 GGGATTGTGAGGTGAAAGAAATCAT 59.580 40.000 0.00 0.00 0.00 2.45
1163 1182 4.766891 GGGATTGTGAGGTGAAAGAAATCA 59.233 41.667 0.00 0.00 0.00 2.57
1164 1183 4.766891 TGGGATTGTGAGGTGAAAGAAATC 59.233 41.667 0.00 0.00 0.00 2.17
1165 1184 4.739793 TGGGATTGTGAGGTGAAAGAAAT 58.260 39.130 0.00 0.00 0.00 2.17
1166 1185 4.177537 TGGGATTGTGAGGTGAAAGAAA 57.822 40.909 0.00 0.00 0.00 2.52
1167 1186 3.874383 TGGGATTGTGAGGTGAAAGAA 57.126 42.857 0.00 0.00 0.00 2.52
1168 1187 3.874383 TTGGGATTGTGAGGTGAAAGA 57.126 42.857 0.00 0.00 0.00 2.52
1169 1188 6.588719 TTATTTGGGATTGTGAGGTGAAAG 57.411 37.500 0.00 0.00 0.00 2.62
1170 1189 7.552050 AATTATTTGGGATTGTGAGGTGAAA 57.448 32.000 0.00 0.00 0.00 2.69
1171 1190 6.127758 CGAATTATTTGGGATTGTGAGGTGAA 60.128 38.462 0.00 0.00 0.00 3.18
1172 1191 5.356751 CGAATTATTTGGGATTGTGAGGTGA 59.643 40.000 0.00 0.00 0.00 4.02
1173 1192 5.581605 CGAATTATTTGGGATTGTGAGGTG 58.418 41.667 0.00 0.00 0.00 4.00
1174 1193 4.097892 GCGAATTATTTGGGATTGTGAGGT 59.902 41.667 0.00 0.00 0.00 3.85
1175 1194 4.339247 AGCGAATTATTTGGGATTGTGAGG 59.661 41.667 0.00 0.00 0.00 3.86
1176 1195 5.505173 AGCGAATTATTTGGGATTGTGAG 57.495 39.130 0.00 0.00 0.00 3.51
1177 1196 5.913137 AAGCGAATTATTTGGGATTGTGA 57.087 34.783 0.00 0.00 0.00 3.58
1178 1197 6.039270 TCCTAAGCGAATTATTTGGGATTGTG 59.961 38.462 0.00 0.00 0.00 3.33
1179 1198 6.126409 TCCTAAGCGAATTATTTGGGATTGT 58.874 36.000 0.00 0.00 0.00 2.71
1180 1199 6.263168 ACTCCTAAGCGAATTATTTGGGATTG 59.737 38.462 0.00 0.00 32.10 2.67
1181 1200 6.365520 ACTCCTAAGCGAATTATTTGGGATT 58.634 36.000 0.00 0.00 32.10 3.01
1182 1201 5.941788 ACTCCTAAGCGAATTATTTGGGAT 58.058 37.500 0.00 0.00 32.10 3.85
1183 1202 5.104693 TGACTCCTAAGCGAATTATTTGGGA 60.105 40.000 0.00 2.58 31.70 4.37
1184 1203 5.123227 TGACTCCTAAGCGAATTATTTGGG 58.877 41.667 0.00 0.00 0.00 4.12
1185 1204 5.817816 ACTGACTCCTAAGCGAATTATTTGG 59.182 40.000 0.00 0.00 0.00 3.28
1186 1205 6.910536 ACTGACTCCTAAGCGAATTATTTG 57.089 37.500 0.00 0.00 0.00 2.32
1187 1206 7.553334 TGTACTGACTCCTAAGCGAATTATTT 58.447 34.615 0.00 0.00 0.00 1.40
1188 1207 7.108841 TGTACTGACTCCTAAGCGAATTATT 57.891 36.000 0.00 0.00 0.00 1.40
1189 1208 6.710597 TGTACTGACTCCTAAGCGAATTAT 57.289 37.500 0.00 0.00 0.00 1.28
1190 1209 6.710597 ATGTACTGACTCCTAAGCGAATTA 57.289 37.500 0.00 0.00 0.00 1.40
1191 1210 5.599999 ATGTACTGACTCCTAAGCGAATT 57.400 39.130 0.00 0.00 0.00 2.17
1192 1211 6.710597 TTATGTACTGACTCCTAAGCGAAT 57.289 37.500 0.00 0.00 0.00 3.34
1193 1212 6.376299 TCTTTATGTACTGACTCCTAAGCGAA 59.624 38.462 0.00 0.00 0.00 4.70
1194 1213 5.884232 TCTTTATGTACTGACTCCTAAGCGA 59.116 40.000 0.00 0.00 0.00 4.93
1195 1214 6.132791 TCTTTATGTACTGACTCCTAAGCG 57.867 41.667 0.00 0.00 0.00 4.68
1196 1215 8.950208 AAATCTTTATGTACTGACTCCTAAGC 57.050 34.615 0.00 0.00 0.00 3.09
1216 1235 9.643693 ACAAATCGCAGAAATGAAATTAAATCT 57.356 25.926 0.00 0.00 43.58 2.40
1219 1238 9.474920 AGAACAAATCGCAGAAATGAAATTAAA 57.525 25.926 0.00 0.00 43.58 1.52
1220 1239 9.128107 GAGAACAAATCGCAGAAATGAAATTAA 57.872 29.630 0.00 0.00 43.58 1.40
1221 1240 7.754924 GGAGAACAAATCGCAGAAATGAAATTA 59.245 33.333 0.00 0.00 43.58 1.40
1222 1241 6.587608 GGAGAACAAATCGCAGAAATGAAATT 59.412 34.615 0.00 0.00 43.58 1.82
1223 1242 6.071728 AGGAGAACAAATCGCAGAAATGAAAT 60.072 34.615 0.00 0.00 43.58 2.17
1224 1243 5.241506 AGGAGAACAAATCGCAGAAATGAAA 59.758 36.000 0.00 0.00 43.58 2.69
1225 1244 4.761739 AGGAGAACAAATCGCAGAAATGAA 59.238 37.500 0.00 0.00 43.58 2.57
1226 1245 4.326826 AGGAGAACAAATCGCAGAAATGA 58.673 39.130 0.00 0.00 43.58 2.57
1227 1246 4.394300 AGAGGAGAACAAATCGCAGAAATG 59.606 41.667 0.00 0.00 43.58 2.32
1228 1247 4.583871 AGAGGAGAACAAATCGCAGAAAT 58.416 39.130 0.00 0.00 43.58 2.17
1229 1248 4.008074 AGAGGAGAACAAATCGCAGAAA 57.992 40.909 0.00 0.00 43.58 2.52
1230 1249 3.685139 AGAGGAGAACAAATCGCAGAA 57.315 42.857 0.00 0.00 43.58 3.02
1233 1252 3.685139 AGAAGAGGAGAACAAATCGCA 57.315 42.857 0.00 0.00 0.00 5.10
1234 1253 4.568760 CCTTAGAAGAGGAGAACAAATCGC 59.431 45.833 0.00 0.00 39.25 4.58
1241 1260 7.591421 AGCTATAACCTTAGAAGAGGAGAAC 57.409 40.000 0.00 0.00 39.25 3.01
1244 1263 7.142680 CGAAAGCTATAACCTTAGAAGAGGAG 58.857 42.308 0.00 0.00 39.25 3.69
1245 1264 6.606395 ACGAAAGCTATAACCTTAGAAGAGGA 59.394 38.462 0.00 0.00 39.25 3.71
1247 1266 6.199342 GCACGAAAGCTATAACCTTAGAAGAG 59.801 42.308 0.00 0.00 0.00 2.85
1263 1282 1.005557 CGATGAAGCTAGCACGAAAGC 60.006 52.381 18.83 0.00 39.08 3.51
1264 1283 2.530177 TCGATGAAGCTAGCACGAAAG 58.470 47.619 18.83 4.21 0.00 2.62
1265 1284 2.647529 TCGATGAAGCTAGCACGAAA 57.352 45.000 18.83 0.00 0.00 3.46
1268 1287 1.845266 ACATCGATGAAGCTAGCACG 58.155 50.000 31.33 13.58 0.00 5.34
1269 1288 3.491267 GGTAACATCGATGAAGCTAGCAC 59.509 47.826 31.33 11.11 0.00 4.40
1270 1289 3.492656 GGGTAACATCGATGAAGCTAGCA 60.493 47.826 31.33 0.00 39.74 3.49
1272 1291 4.051922 GTGGGTAACATCGATGAAGCTAG 58.948 47.826 31.33 3.61 39.74 3.42
1274 1293 2.420129 GGTGGGTAACATCGATGAAGCT 60.420 50.000 31.33 14.36 39.74 3.74
1276 1295 3.260475 TGGTGGGTAACATCGATGAAG 57.740 47.619 31.33 6.01 39.74 3.02
1277 1296 3.704800 TTGGTGGGTAACATCGATGAA 57.295 42.857 31.33 15.86 39.74 2.57
1278 1297 3.704800 TTTGGTGGGTAACATCGATGA 57.295 42.857 31.33 7.62 39.74 2.92
1279 1298 6.443934 TTTATTTGGTGGGTAACATCGATG 57.556 37.500 23.68 23.68 39.74 3.84
1281 1300 6.570764 GCTTTTTATTTGGTGGGTAACATCGA 60.571 38.462 0.00 0.00 39.74 3.59
1282 1301 5.575218 GCTTTTTATTTGGTGGGTAACATCG 59.425 40.000 0.00 0.00 39.74 3.84
1283 1302 5.872617 GGCTTTTTATTTGGTGGGTAACATC 59.127 40.000 0.00 0.00 39.74 3.06
1284 1303 5.546110 AGGCTTTTTATTTGGTGGGTAACAT 59.454 36.000 0.00 0.00 39.74 2.71
1285 1304 4.902448 AGGCTTTTTATTTGGTGGGTAACA 59.098 37.500 0.00 0.00 39.74 2.41
1287 1306 4.902448 ACAGGCTTTTTATTTGGTGGGTAA 59.098 37.500 0.00 0.00 0.00 2.85
1289 1308 3.313791 ACAGGCTTTTTATTTGGTGGGT 58.686 40.909 0.00 0.00 0.00 4.51
1291 1310 4.954875 TGAACAGGCTTTTTATTTGGTGG 58.045 39.130 0.00 0.00 0.00 4.61
1292 1311 4.990426 CCTGAACAGGCTTTTTATTTGGTG 59.010 41.667 7.95 0.00 42.44 4.17
1293 1312 5.213891 CCTGAACAGGCTTTTTATTTGGT 57.786 39.130 7.95 0.00 42.44 3.67
1307 1326 1.471119 TAGACGGCCTACCTGAACAG 58.529 55.000 0.00 0.00 0.00 3.16
1308 1327 1.927487 TTAGACGGCCTACCTGAACA 58.073 50.000 0.00 0.00 0.00 3.18
1309 1328 3.132467 AGAATTAGACGGCCTACCTGAAC 59.868 47.826 0.00 0.00 0.00 3.18
1310 1329 3.371965 AGAATTAGACGGCCTACCTGAA 58.628 45.455 0.00 0.00 0.00 3.02
1311 1330 3.028094 AGAATTAGACGGCCTACCTGA 57.972 47.619 0.00 0.00 0.00 3.86
1312 1331 3.890147 ACTAGAATTAGACGGCCTACCTG 59.110 47.826 0.00 0.00 0.00 4.00
1315 1334 4.618965 CCAACTAGAATTAGACGGCCTAC 58.381 47.826 0.00 0.00 0.00 3.18
1316 1335 3.069158 GCCAACTAGAATTAGACGGCCTA 59.931 47.826 0.00 0.00 39.61 3.93
1317 1336 2.158943 GCCAACTAGAATTAGACGGCCT 60.159 50.000 0.00 0.00 39.61 5.19
1318 1337 2.158943 AGCCAACTAGAATTAGACGGCC 60.159 50.000 0.00 0.00 43.06 6.13
1319 1338 2.866762 CAGCCAACTAGAATTAGACGGC 59.133 50.000 0.00 0.00 42.72 5.68
1320 1339 2.866762 GCAGCCAACTAGAATTAGACGG 59.133 50.000 0.00 0.00 0.00 4.79
1321 1340 2.535984 CGCAGCCAACTAGAATTAGACG 59.464 50.000 0.00 0.00 0.00 4.18
1322 1341 3.522553 ACGCAGCCAACTAGAATTAGAC 58.477 45.455 0.00 0.00 0.00 2.59
1323 1342 3.887621 ACGCAGCCAACTAGAATTAGA 57.112 42.857 0.00 0.00 0.00 2.10
1325 1344 4.081309 ACCTAACGCAGCCAACTAGAATTA 60.081 41.667 0.00 0.00 0.00 1.40
1327 1346 2.236395 ACCTAACGCAGCCAACTAGAAT 59.764 45.455 0.00 0.00 0.00 2.40
1329 1348 1.067142 CACCTAACGCAGCCAACTAGA 60.067 52.381 0.00 0.00 0.00 2.43
1337 1445 2.436115 GGGTCCACCTAACGCAGC 60.436 66.667 0.00 0.00 35.85 5.25
1352 1460 6.937436 AGAAACTAACACACTAAAACAGGG 57.063 37.500 0.00 0.00 0.00 4.45
1353 1461 8.340443 GGTAAGAAACTAACACACTAAAACAGG 58.660 37.037 0.00 0.00 0.00 4.00
1354 1462 8.060090 CGGTAAGAAACTAACACACTAAAACAG 58.940 37.037 0.00 0.00 0.00 3.16
1365 1473 4.503643 CCTGAACCCGGTAAGAAACTAACA 60.504 45.833 0.00 0.00 0.00 2.41
1427 1535 3.518634 TTTGCCTTTCTTTCTGCGTTT 57.481 38.095 0.00 0.00 0.00 3.60
1428 1536 3.186909 GTTTTGCCTTTCTTTCTGCGTT 58.813 40.909 0.00 0.00 0.00 4.84
1430 1538 2.127251 GGTTTTGCCTTTCTTTCTGCG 58.873 47.619 0.00 0.00 0.00 5.18
1431 1539 3.126073 CTGGTTTTGCCTTTCTTTCTGC 58.874 45.455 0.00 0.00 38.35 4.26
1432 1540 4.654091 TCTGGTTTTGCCTTTCTTTCTG 57.346 40.909 0.00 0.00 38.35 3.02
1438 1546 3.457234 CCAGTTTCTGGTTTTGCCTTTC 58.543 45.455 7.55 0.00 45.82 2.62
1463 1571 3.326747 GCAAAGTAGTGGTCAGTCGATT 58.673 45.455 0.00 0.00 0.00 3.34
1464 1572 2.671351 CGCAAAGTAGTGGTCAGTCGAT 60.671 50.000 0.00 0.00 0.00 3.59
1477 1585 3.527533 ACAAACTGACTGACGCAAAGTA 58.472 40.909 0.00 0.00 0.00 2.24
1484 1592 3.129852 TGCAAAACAAACTGACTGACG 57.870 42.857 0.00 0.00 0.00 4.35
1496 1604 6.566197 AAAGACAACCAATTTTGCAAAACA 57.434 29.167 26.05 6.38 0.00 2.83
1500 1608 6.566197 AACAAAAGACAACCAATTTTGCAA 57.434 29.167 0.00 0.00 44.10 4.08
1510 1618 5.455525 CGATTGACAGAAACAAAAGACAACC 59.544 40.000 0.00 0.00 0.00 3.77
1543 1651 1.276421 CAGTCGACTGACCCCAGAAAT 59.724 52.381 36.73 0.00 46.74 2.17
1577 1685 7.433680 GGTTGTTCTTCAGATAACATTTTGGT 58.566 34.615 0.85 0.00 35.64 3.67
1621 1729 7.148474 GCTCGATGTAACACTTTCTTGGATTTA 60.148 37.037 0.00 0.00 0.00 1.40
1640 1748 0.179189 GCAACGGAAAAGGCTCGATG 60.179 55.000 0.00 0.12 0.00 3.84
1668 1776 1.174712 AGTGCATCAACTGTGTGGCC 61.175 55.000 0.00 0.00 0.00 5.36
1674 1782 1.604593 GGGCCAGTGCATCAACTGT 60.605 57.895 4.39 0.00 45.08 3.55
1680 1788 4.512914 GGGGAGGGCCAGTGCATC 62.513 72.222 6.18 0.00 40.13 3.91
1697 1805 2.584673 AGGGACTCGGACAGTGATG 58.415 57.895 0.00 0.00 34.41 3.07
1716 1824 1.227999 ATGACGACGGCAAACCACAG 61.228 55.000 7.85 0.00 34.57 3.66
1859 1968 3.087781 GTTTCAGTAGTAGGAGGACGGT 58.912 50.000 0.00 0.00 0.00 4.83
1873 1995 0.320771 AATCTCTGCCGCGTTTCAGT 60.321 50.000 4.92 0.00 0.00 3.41
1888 2010 4.390297 GCTAGAACAAAGTCTCGCAAATCT 59.610 41.667 0.00 0.00 36.57 2.40
1954 2076 8.696374 TCCAGTATAAAGAGATAACAGACCAAG 58.304 37.037 0.00 0.00 0.00 3.61
2056 2179 8.313292 AGCCATTCTTGAGTTTGCAATAATAAA 58.687 29.630 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.