Multiple sequence alignment - TraesCS7B01G060400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G060400 chr7B 100.000 4471 0 0 1 4471 63169066 63173536 0.000000e+00 8257
1 TraesCS7B01G060400 chr7B 88.480 842 68 13 3652 4471 63539082 63539916 0.000000e+00 990
2 TraesCS7B01G060400 chr7B 86.920 841 85 10 3652 4471 63490275 63491111 0.000000e+00 920
3 TraesCS7B01G060400 chr7B 80.745 805 133 18 1704 2503 388954612 388953825 3.820000e-170 608
4 TraesCS7B01G060400 chr7B 81.266 395 64 8 1706 2095 388597632 388597243 1.210000e-80 311
5 TraesCS7B01G060400 chr7B 90.580 138 13 0 1184 1321 388954853 388954716 2.750000e-42 183
6 TraesCS7B01G060400 chr7D 90.858 2308 102 52 887 3158 104749906 104747672 0.000000e+00 2992
7 TraesCS7B01G060400 chr7D 88.214 840 75 8 3652 4471 104743289 104742454 0.000000e+00 981
8 TraesCS7B01G060400 chr7D 85.679 803 76 23 3691 4471 104745347 104744562 0.000000e+00 809
9 TraesCS7B01G060400 chr7D 80.994 805 131 18 1704 2503 392746508 392745721 1.770000e-173 619
10 TraesCS7B01G060400 chr7D 93.915 378 16 3 3254 3624 104747575 104747198 8.400000e-157 564
11 TraesCS7B01G060400 chr7D 87.538 329 33 6 60 387 104750871 104750550 1.520000e-99 374
12 TraesCS7B01G060400 chr7D 90.580 138 13 0 1184 1321 392746727 392746590 2.750000e-42 183
13 TraesCS7B01G060400 chr7D 80.072 276 23 19 414 660 104750376 104750104 4.600000e-40 176
14 TraesCS7B01G060400 chr7D 86.567 134 18 0 1189 1322 392264935 392264802 1.000000e-31 148
15 TraesCS7B01G060400 chr7A 92.385 1602 69 23 936 2504 109265211 109263630 0.000000e+00 2233
16 TraesCS7B01G060400 chr7A 85.956 1004 82 35 2590 3553 109263582 109262598 0.000000e+00 1018
17 TraesCS7B01G060400 chr7A 81.615 805 126 18 1704 2503 444793325 444792538 0.000000e+00 647
18 TraesCS7B01G060400 chr7A 92.113 355 19 7 2810 3158 109239772 109239421 4.020000e-135 492
19 TraesCS7B01G060400 chr7A 90.580 138 13 0 1184 1321 444793541 444793404 2.750000e-42 183
20 TraesCS7B01G060400 chr7A 87.313 134 17 0 1189 1322 443965174 443965041 2.150000e-33 154
21 TraesCS7B01G060400 chr1B 80.516 775 119 24 1745 2503 59634636 59635394 2.330000e-157 566
22 TraesCS7B01G060400 chr1D 79.974 774 122 26 1745 2503 40000467 39999712 1.410000e-149 540
23 TraesCS7B01G060400 chr1A 79.793 772 127 23 1745 2503 39636876 39636121 6.580000e-148 534
24 TraesCS7B01G060400 chr2D 87.879 132 16 0 1189 1320 648636970 648636839 5.990000e-34 156
25 TraesCS7B01G060400 chr2A 87.407 135 17 0 1186 1320 775747347 775747481 5.990000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G060400 chr7B 63169066 63173536 4470 False 8257.000000 8257 100.000000 1 4471 1 chr7B.!!$F1 4470
1 TraesCS7B01G060400 chr7B 63539082 63539916 834 False 990.000000 990 88.480000 3652 4471 1 chr7B.!!$F3 819
2 TraesCS7B01G060400 chr7B 63490275 63491111 836 False 920.000000 920 86.920000 3652 4471 1 chr7B.!!$F2 819
3 TraesCS7B01G060400 chr7B 388953825 388954853 1028 True 395.500000 608 85.662500 1184 2503 2 chr7B.!!$R2 1319
4 TraesCS7B01G060400 chr7D 104742454 104750871 8417 True 982.666667 2992 87.712667 60 4471 6 chr7D.!!$R2 4411
5 TraesCS7B01G060400 chr7D 392745721 392746727 1006 True 401.000000 619 85.787000 1184 2503 2 chr7D.!!$R3 1319
6 TraesCS7B01G060400 chr7A 109262598 109265211 2613 True 1625.500000 2233 89.170500 936 3553 2 chr7A.!!$R3 2617
7 TraesCS7B01G060400 chr7A 444792538 444793541 1003 True 415.000000 647 86.097500 1184 2503 2 chr7A.!!$R4 1319
8 TraesCS7B01G060400 chr1B 59634636 59635394 758 False 566.000000 566 80.516000 1745 2503 1 chr1B.!!$F1 758
9 TraesCS7B01G060400 chr1D 39999712 40000467 755 True 540.000000 540 79.974000 1745 2503 1 chr1D.!!$R1 758
10 TraesCS7B01G060400 chr1A 39636121 39636876 755 True 534.000000 534 79.793000 1745 2503 1 chr1A.!!$R1 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 891 0.101399 CTCTGTGGATTCCTCGGTCG 59.899 60.0 12.22 3.37 0.00 4.79 F
1653 1989 0.676782 CCGCGGATCCTGTTCCTTTT 60.677 55.0 24.07 0.00 33.30 2.27 F
2724 3064 0.097150 CTCTTCGTCTCATCGCACGA 59.903 55.0 0.00 0.00 43.12 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2700 3040 0.248825 CGATGAGACGAAGAGGCCAG 60.249 60.0 5.01 0.0 35.09 4.85 R
3128 3487 0.248843 TGATGCACCACGACATGCTA 59.751 50.0 10.06 0.0 42.55 3.49 R
4065 8360 0.243095 GGACTAAGACGAACCGCACT 59.757 55.0 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.822707 AGCGAGGGGTTCTACTCTAA 57.177 50.000 0.00 0.00 0.00 2.10
20 21 3.315880 AGCGAGGGGTTCTACTCTAAT 57.684 47.619 0.00 0.00 0.00 1.73
21 22 3.224269 AGCGAGGGGTTCTACTCTAATC 58.776 50.000 0.00 0.00 0.00 1.75
22 23 3.117436 AGCGAGGGGTTCTACTCTAATCT 60.117 47.826 0.00 0.00 0.00 2.40
23 24 3.637694 GCGAGGGGTTCTACTCTAATCTT 59.362 47.826 0.00 0.00 0.00 2.40
24 25 4.099727 GCGAGGGGTTCTACTCTAATCTTT 59.900 45.833 0.00 0.00 0.00 2.52
25 26 5.736777 GCGAGGGGTTCTACTCTAATCTTTC 60.737 48.000 0.00 0.00 0.00 2.62
26 27 5.595133 CGAGGGGTTCTACTCTAATCTTTCT 59.405 44.000 0.00 0.00 0.00 2.52
27 28 6.771749 CGAGGGGTTCTACTCTAATCTTTCTA 59.228 42.308 0.00 0.00 0.00 2.10
28 29 7.040961 CGAGGGGTTCTACTCTAATCTTTCTAG 60.041 44.444 0.00 0.00 0.00 2.43
29 30 6.551975 AGGGGTTCTACTCTAATCTTTCTAGC 59.448 42.308 0.00 0.00 0.00 3.42
30 31 6.324254 GGGGTTCTACTCTAATCTTTCTAGCA 59.676 42.308 0.00 0.00 0.00 3.49
31 32 7.147707 GGGGTTCTACTCTAATCTTTCTAGCAA 60.148 40.741 0.00 0.00 0.00 3.91
32 33 8.425703 GGGTTCTACTCTAATCTTTCTAGCAAT 58.574 37.037 0.00 0.00 0.00 3.56
92 93 9.871299 TTTTTGTTTGTTTTCAGCTTTTTAGTC 57.129 25.926 0.00 0.00 0.00 2.59
130 131 6.257994 ACTCCCCATATAGCATGGATATTG 57.742 41.667 4.83 0.00 41.64 1.90
287 288 9.841295 AGGTGAACACATTCTAAGTTACTTAAA 57.159 29.630 6.29 4.69 35.69 1.52
461 608 3.216800 AGAAACCAAAAGAACCGGTACC 58.783 45.455 8.00 0.16 31.12 3.34
463 610 2.265589 ACCAAAAGAACCGGTACCAG 57.734 50.000 8.00 2.40 0.00 4.00
468 615 4.098196 CCAAAAGAACCGGTACCAGAAAAA 59.902 41.667 8.00 0.00 0.00 1.94
469 616 5.221362 CCAAAAGAACCGGTACCAGAAAAAT 60.221 40.000 8.00 0.00 0.00 1.82
470 617 5.700722 AAAGAACCGGTACCAGAAAAATC 57.299 39.130 8.00 0.00 0.00 2.17
471 618 4.360951 AGAACCGGTACCAGAAAAATCA 57.639 40.909 8.00 0.00 0.00 2.57
472 619 4.070009 AGAACCGGTACCAGAAAAATCAC 58.930 43.478 8.00 0.00 0.00 3.06
503 650 4.832608 GAGTTGGGCCGGCCTACG 62.833 72.222 42.70 0.00 43.80 3.51
515 662 1.757340 GCCTACGGTGTCTAGCCCT 60.757 63.158 0.00 0.00 0.00 5.19
516 663 2.017559 GCCTACGGTGTCTAGCCCTG 62.018 65.000 0.00 0.00 0.00 4.45
521 668 1.296715 GGTGTCTAGCCCTGTGTGG 59.703 63.158 0.00 0.00 0.00 4.17
533 680 0.461339 CTGTGTGGGGCGTGGTATAC 60.461 60.000 0.00 0.00 0.00 1.47
580 759 6.015180 TGGAAAATGAAAAGGATGAAGAGTGG 60.015 38.462 0.00 0.00 0.00 4.00
583 762 7.693969 AAATGAAAAGGATGAAGAGTGGTAG 57.306 36.000 0.00 0.00 0.00 3.18
585 764 4.844085 TGAAAAGGATGAAGAGTGGTAGGA 59.156 41.667 0.00 0.00 0.00 2.94
586 765 5.046304 TGAAAAGGATGAAGAGTGGTAGGAG 60.046 44.000 0.00 0.00 0.00 3.69
590 769 6.532119 AGGATGAAGAGTGGTAGGAGTATA 57.468 41.667 0.00 0.00 0.00 1.47
591 770 7.109901 AGGATGAAGAGTGGTAGGAGTATAT 57.890 40.000 0.00 0.00 0.00 0.86
593 772 8.679725 AGGATGAAGAGTGGTAGGAGTATATTA 58.320 37.037 0.00 0.00 0.00 0.98
594 773 9.482175 GGATGAAGAGTGGTAGGAGTATATTAT 57.518 37.037 0.00 0.00 0.00 1.28
634 813 9.664332 GAGATAATGTTGCTTGATCTGGTATAT 57.336 33.333 0.00 0.00 0.00 0.86
636 815 5.954296 ATGTTGCTTGATCTGGTATATGC 57.046 39.130 0.00 0.00 0.00 3.14
638 817 6.173427 TGTTGCTTGATCTGGTATATGCTA 57.827 37.500 0.00 0.00 0.00 3.49
665 844 7.615582 CATGATTAATGTTATCCTATGGCGT 57.384 36.000 0.00 0.00 0.00 5.68
666 845 7.688372 CATGATTAATGTTATCCTATGGCGTC 58.312 38.462 0.00 0.00 0.00 5.19
667 846 6.764379 TGATTAATGTTATCCTATGGCGTCA 58.236 36.000 0.00 0.00 0.00 4.35
669 848 4.689612 AATGTTATCCTATGGCGTCAGT 57.310 40.909 0.00 0.00 0.00 3.41
671 850 5.801531 ATGTTATCCTATGGCGTCAGTTA 57.198 39.130 0.00 0.00 0.00 2.24
675 854 6.717997 TGTTATCCTATGGCGTCAGTTAGATA 59.282 38.462 0.00 0.00 0.00 1.98
676 855 5.906113 ATCCTATGGCGTCAGTTAGATAG 57.094 43.478 0.00 0.00 0.00 2.08
677 856 4.079970 TCCTATGGCGTCAGTTAGATAGG 58.920 47.826 5.88 5.88 35.64 2.57
678 857 3.193691 CCTATGGCGTCAGTTAGATAGGG 59.806 52.174 0.00 0.00 32.19 3.53
679 858 2.154567 TGGCGTCAGTTAGATAGGGT 57.845 50.000 0.00 0.00 0.00 4.34
680 859 2.463752 TGGCGTCAGTTAGATAGGGTT 58.536 47.619 0.00 0.00 0.00 4.11
681 860 2.835764 TGGCGTCAGTTAGATAGGGTTT 59.164 45.455 0.00 0.00 0.00 3.27
682 861 3.195661 GGCGTCAGTTAGATAGGGTTTG 58.804 50.000 0.00 0.00 0.00 2.93
683 862 2.608090 GCGTCAGTTAGATAGGGTTTGC 59.392 50.000 0.00 0.00 0.00 3.68
684 863 3.195661 CGTCAGTTAGATAGGGTTTGCC 58.804 50.000 0.00 0.00 0.00 4.52
694 873 2.941583 GGTTTGCCCTCCCTCCCT 60.942 66.667 0.00 0.00 0.00 4.20
695 874 2.677848 GTTTGCCCTCCCTCCCTC 59.322 66.667 0.00 0.00 0.00 4.30
696 875 1.925972 GTTTGCCCTCCCTCCCTCT 60.926 63.158 0.00 0.00 0.00 3.69
697 876 1.925455 TTTGCCCTCCCTCCCTCTG 60.925 63.158 0.00 0.00 0.00 3.35
698 877 2.713111 TTTGCCCTCCCTCCCTCTGT 62.713 60.000 0.00 0.00 0.00 3.41
699 878 3.086600 GCCCTCCCTCCCTCTGTG 61.087 72.222 0.00 0.00 0.00 3.66
700 879 2.366167 CCCTCCCTCCCTCTGTGG 60.366 72.222 0.00 0.00 0.00 4.17
701 880 2.780693 CCTCCCTCCCTCTGTGGA 59.219 66.667 0.00 0.00 38.35 4.02
702 881 1.316266 CCTCCCTCCCTCTGTGGAT 59.684 63.158 0.00 0.00 38.35 3.41
703 882 0.327000 CCTCCCTCCCTCTGTGGATT 60.327 60.000 0.00 0.00 38.35 3.01
704 883 1.127343 CTCCCTCCCTCTGTGGATTC 58.873 60.000 0.00 0.00 38.35 2.52
705 884 0.326618 TCCCTCCCTCTGTGGATTCC 60.327 60.000 0.00 0.00 38.35 3.01
706 885 0.327000 CCCTCCCTCTGTGGATTCCT 60.327 60.000 3.95 0.00 38.35 3.36
707 886 1.127343 CCTCCCTCTGTGGATTCCTC 58.873 60.000 3.95 0.59 38.35 3.71
708 887 0.749649 CTCCCTCTGTGGATTCCTCG 59.250 60.000 3.95 0.00 38.35 4.63
709 888 0.687757 TCCCTCTGTGGATTCCTCGG 60.688 60.000 3.95 5.76 38.35 4.63
710 889 0.978146 CCCTCTGTGGATTCCTCGGT 60.978 60.000 12.22 0.00 38.35 4.69
711 890 0.461961 CCTCTGTGGATTCCTCGGTC 59.538 60.000 12.22 0.00 38.35 4.79
712 891 0.101399 CTCTGTGGATTCCTCGGTCG 59.899 60.000 12.22 3.37 0.00 4.79
713 892 1.519455 CTGTGGATTCCTCGGTCGC 60.519 63.158 3.95 0.00 0.00 5.19
714 893 1.949847 CTGTGGATTCCTCGGTCGCT 61.950 60.000 3.95 0.00 0.00 4.93
715 894 1.218316 GTGGATTCCTCGGTCGCTT 59.782 57.895 3.95 0.00 0.00 4.68
716 895 0.806492 GTGGATTCCTCGGTCGCTTC 60.806 60.000 3.95 0.00 0.00 3.86
717 896 1.227292 GGATTCCTCGGTCGCTTCC 60.227 63.158 0.00 0.00 0.00 3.46
736 915 3.248171 GATGCGCGTCGTCCAGTC 61.248 66.667 14.88 0.00 0.00 3.51
737 916 4.796231 ATGCGCGTCGTCCAGTCC 62.796 66.667 8.43 0.00 0.00 3.85
740 919 3.103911 CGCGTCGTCCAGTCCAAC 61.104 66.667 0.00 0.00 0.00 3.77
741 920 3.103911 GCGTCGTCCAGTCCAACG 61.104 66.667 0.00 0.00 40.17 4.10
742 921 2.430244 CGTCGTCCAGTCCAACGG 60.430 66.667 0.00 0.00 39.31 4.44
743 922 2.732658 GTCGTCCAGTCCAACGGT 59.267 61.111 0.00 0.00 39.31 4.83
744 923 1.372623 GTCGTCCAGTCCAACGGTC 60.373 63.158 0.00 0.00 39.31 4.79
745 924 2.048503 CGTCCAGTCCAACGGTCC 60.049 66.667 0.00 0.00 35.32 4.46
746 925 2.048503 GTCCAGTCCAACGGTCCG 60.049 66.667 10.48 10.48 0.00 4.79
747 926 2.522436 TCCAGTCCAACGGTCCGT 60.522 61.111 12.23 12.23 43.97 4.69
748 927 2.048503 CCAGTCCAACGGTCCGTC 60.049 66.667 19.16 4.91 39.99 4.79
749 928 2.430244 CAGTCCAACGGTCCGTCG 60.430 66.667 19.16 6.33 39.99 5.12
750 929 2.595463 AGTCCAACGGTCCGTCGA 60.595 61.111 19.16 13.53 39.99 4.20
751 930 2.195567 AGTCCAACGGTCCGTCGAA 61.196 57.895 19.16 2.74 39.99 3.71
752 931 2.018324 GTCCAACGGTCCGTCGAAC 61.018 63.158 19.16 11.91 39.99 3.95
753 932 2.027897 CCAACGGTCCGTCGAACA 59.972 61.111 19.16 0.00 39.99 3.18
754 933 1.373748 CCAACGGTCCGTCGAACAT 60.374 57.895 19.16 0.00 39.99 2.71
755 934 1.623081 CCAACGGTCCGTCGAACATG 61.623 60.000 19.16 10.95 39.99 3.21
756 935 1.373748 AACGGTCCGTCGAACATGG 60.374 57.895 19.16 0.00 39.99 3.66
757 936 1.808531 AACGGTCCGTCGAACATGGA 61.809 55.000 19.16 0.00 39.99 3.41
758 937 1.516386 CGGTCCGTCGAACATGGAG 60.516 63.158 2.08 0.00 41.29 3.86
759 938 3.782042 GTCCGTCGAACATGGAGC 58.218 61.111 0.00 0.00 41.29 4.70
760 939 2.158959 GTCCGTCGAACATGGAGCG 61.159 63.158 0.00 0.00 41.29 5.03
761 940 2.885644 CCGTCGAACATGGAGCGG 60.886 66.667 0.00 0.00 31.73 5.52
762 941 3.554692 CGTCGAACATGGAGCGGC 61.555 66.667 0.00 0.00 0.00 6.53
763 942 3.554692 GTCGAACATGGAGCGGCG 61.555 66.667 0.51 0.51 0.00 6.46
790 969 0.963962 GGTTATACGGCGGAGGATCA 59.036 55.000 13.24 0.00 36.25 2.92
824 1033 3.475774 GCACGAAACGCGGTCGAT 61.476 61.111 32.19 18.06 46.49 3.59
825 1034 2.687436 CACGAAACGCGGTCGATC 59.313 61.111 32.19 12.43 46.49 3.69
826 1035 1.800315 CACGAAACGCGGTCGATCT 60.800 57.895 32.19 13.94 46.49 2.75
840 1049 1.509004 GATCTATCGGCCGAGGAGC 59.491 63.158 33.87 28.91 0.00 4.70
851 1060 4.479993 GAGGAGCCGCACCTGCAT 62.480 66.667 14.73 0.00 42.21 3.96
931 1164 2.844348 ACAACAGAATCCCCCGATACTT 59.156 45.455 0.00 0.00 0.00 2.24
1040 1280 2.413837 GAATATACGGCGGCACTTGAT 58.586 47.619 13.24 0.00 0.00 2.57
1059 1299 9.814899 CACTTGATTAGTATCTATCCATCCATC 57.185 37.037 0.00 0.00 34.56 3.51
1060 1300 8.986991 ACTTGATTAGTATCTATCCATCCATCC 58.013 37.037 0.00 0.00 34.56 3.51
1061 1301 9.211410 CTTGATTAGTATCTATCCATCCATCCT 57.789 37.037 0.00 0.00 0.00 3.24
1062 1302 9.566331 TTGATTAGTATCTATCCATCCATCCTT 57.434 33.333 0.00 0.00 0.00 3.36
1063 1303 9.206690 TGATTAGTATCTATCCATCCATCCTTC 57.793 37.037 0.00 0.00 0.00 3.46
1064 1304 7.979786 TTAGTATCTATCCATCCATCCTTCC 57.020 40.000 0.00 0.00 0.00 3.46
1065 1305 6.177663 AGTATCTATCCATCCATCCTTCCT 57.822 41.667 0.00 0.00 0.00 3.36
1066 1306 6.579214 AGTATCTATCCATCCATCCTTCCTT 58.421 40.000 0.00 0.00 0.00 3.36
1080 1320 3.533907 TCCTTCCTTCTCCTCTGAGGTAT 59.466 47.826 22.50 0.00 39.23 2.73
1185 1436 1.533033 TCGGACAAGGACCTGCAGA 60.533 57.895 17.39 0.00 0.00 4.26
1344 1595 0.810648 CGCTCAGTCTCTCTTCTGCT 59.189 55.000 0.00 0.00 0.00 4.24
1366 1677 1.360194 CTCTCGCTCCTGCTTGCTTG 61.360 60.000 0.00 0.00 36.97 4.01
1471 1798 4.403137 TACGTGGGTCGGCGTTCG 62.403 66.667 6.85 8.41 44.69 3.95
1493 1820 8.332464 GTTCGTGATCCGATTTATTTTGTCATA 58.668 33.333 7.05 0.00 46.75 2.15
1495 1822 8.495148 TCGTGATCCGATTTATTTTGTCATATG 58.505 33.333 0.00 0.00 41.60 1.78
1496 1823 8.495148 CGTGATCCGATTTATTTTGTCATATGA 58.505 33.333 0.00 0.00 39.56 2.15
1519 1849 1.230324 GAAGATCCAACATAGGCGGC 58.770 55.000 0.00 0.00 0.00 6.53
1528 1858 1.320344 ACATAGGCGGCGACTTGAGA 61.320 55.000 25.39 1.61 0.00 3.27
1619 1953 8.803235 CGAATCTGGGATAATATATCGGGAATA 58.197 37.037 0.00 0.00 0.00 1.75
1639 1975 3.032017 AGAGATGAATTATGTCCGCGG 57.968 47.619 22.12 22.12 29.54 6.46
1649 1985 2.202892 GTCCGCGGATCCTGTTCC 60.203 66.667 33.58 12.16 0.00 3.62
1650 1986 2.363795 TCCGCGGATCCTGTTCCT 60.364 61.111 27.28 0.00 33.30 3.36
1651 1987 1.987855 TCCGCGGATCCTGTTCCTT 60.988 57.895 27.28 0.00 33.30 3.36
1652 1988 1.078426 CCGCGGATCCTGTTCCTTT 60.078 57.895 24.07 0.00 33.30 3.11
1653 1989 0.676782 CCGCGGATCCTGTTCCTTTT 60.677 55.000 24.07 0.00 33.30 2.27
1680 2020 3.134021 TGCATTACGTGTGCATTCATG 57.866 42.857 21.67 0.00 46.76 3.07
1693 2033 6.642131 GTGTGCATTCATGTACTGTTTTCATT 59.358 34.615 9.12 0.00 42.76 2.57
1870 2210 2.722201 GGGCCTCTGGATCGTCGTT 61.722 63.158 0.84 0.00 0.00 3.85
2212 2552 1.202940 GGCAGGACCTTCAACTTCCTT 60.203 52.381 0.00 0.00 37.69 3.36
2284 2624 2.287117 ATCCAGGCCACCATCCCA 60.287 61.111 5.01 0.00 0.00 4.37
2342 2682 4.509737 GCGTCGTCCTGGCCTACC 62.510 72.222 3.32 0.00 0.00 3.18
2431 2771 2.430694 CGACAACATCCTCATCACCCTA 59.569 50.000 0.00 0.00 0.00 3.53
2527 2867 3.785499 CTCGTCCTCGTCGTCGCA 61.785 66.667 0.00 0.00 38.33 5.10
2528 2868 3.978867 CTCGTCCTCGTCGTCGCAC 62.979 68.421 0.00 0.00 38.33 5.34
2529 2869 4.379143 CGTCCTCGTCGTCGCACA 62.379 66.667 0.00 0.00 36.96 4.57
2530 2870 2.799916 GTCCTCGTCGTCGCACAC 60.800 66.667 0.00 0.00 36.96 3.82
2531 2871 3.281395 TCCTCGTCGTCGCACACA 61.281 61.111 0.00 0.00 36.96 3.72
2534 2874 1.674611 CCTCGTCGTCGCACACATTC 61.675 60.000 0.00 0.00 36.96 2.67
2546 2886 4.864806 TCGCACACATTCTTCTGAGATTAC 59.135 41.667 0.00 0.00 0.00 1.89
2563 2903 8.589335 TGAGATTACTTTGTGTCTTGTTCTAC 57.411 34.615 0.00 0.00 0.00 2.59
2564 2904 8.421784 TGAGATTACTTTGTGTCTTGTTCTACT 58.578 33.333 0.00 0.00 0.00 2.57
2565 2905 8.819643 AGATTACTTTGTGTCTTGTTCTACTC 57.180 34.615 0.00 0.00 0.00 2.59
2566 2906 8.643324 AGATTACTTTGTGTCTTGTTCTACTCT 58.357 33.333 0.00 0.00 0.00 3.24
2567 2907 9.909644 GATTACTTTGTGTCTTGTTCTACTCTA 57.090 33.333 0.00 0.00 0.00 2.43
2568 2908 9.915629 ATTACTTTGTGTCTTGTTCTACTCTAG 57.084 33.333 0.00 0.00 0.00 2.43
2569 2909 6.217294 ACTTTGTGTCTTGTTCTACTCTAGC 58.783 40.000 0.00 0.00 0.00 3.42
2570 2910 6.041069 ACTTTGTGTCTTGTTCTACTCTAGCT 59.959 38.462 0.00 0.00 0.00 3.32
2571 2911 6.406692 TTGTGTCTTGTTCTACTCTAGCTT 57.593 37.500 0.00 0.00 0.00 3.74
2572 2912 6.406692 TGTGTCTTGTTCTACTCTAGCTTT 57.593 37.500 0.00 0.00 0.00 3.51
2574 2914 7.948357 TGTGTCTTGTTCTACTCTAGCTTTAA 58.052 34.615 0.00 0.00 0.00 1.52
2575 2915 7.866393 TGTGTCTTGTTCTACTCTAGCTTTAAC 59.134 37.037 0.00 0.00 0.00 2.01
2576 2916 7.328982 GTGTCTTGTTCTACTCTAGCTTTAACC 59.671 40.741 0.00 0.00 0.00 2.85
2577 2917 7.014905 TGTCTTGTTCTACTCTAGCTTTAACCA 59.985 37.037 0.00 0.00 0.00 3.67
2578 2918 7.871463 GTCTTGTTCTACTCTAGCTTTAACCAA 59.129 37.037 0.00 0.00 0.00 3.67
2579 2919 8.088981 TCTTGTTCTACTCTAGCTTTAACCAAG 58.911 37.037 0.00 0.00 35.29 3.61
2580 2920 7.299246 TGTTCTACTCTAGCTTTAACCAAGT 57.701 36.000 0.00 0.00 34.56 3.16
2581 2921 8.413309 TGTTCTACTCTAGCTTTAACCAAGTA 57.587 34.615 0.00 0.00 34.56 2.24
2582 2922 9.032624 TGTTCTACTCTAGCTTTAACCAAGTAT 57.967 33.333 0.00 0.00 34.56 2.12
2583 2923 9.303537 GTTCTACTCTAGCTTTAACCAAGTATG 57.696 37.037 0.00 0.00 34.56 2.39
2584 2924 8.591114 TCTACTCTAGCTTTAACCAAGTATGT 57.409 34.615 0.00 0.00 34.56 2.29
2585 2925 9.690913 TCTACTCTAGCTTTAACCAAGTATGTA 57.309 33.333 0.00 0.00 34.56 2.29
2586 2926 9.733219 CTACTCTAGCTTTAACCAAGTATGTAC 57.267 37.037 0.00 0.00 34.56 2.90
2587 2927 8.363761 ACTCTAGCTTTAACCAAGTATGTACT 57.636 34.615 0.00 0.00 38.39 2.73
2588 2928 9.471702 ACTCTAGCTTTAACCAAGTATGTACTA 57.528 33.333 0.00 0.00 34.99 1.82
2601 2941 3.515330 ATGTACTAACTAACCGCGCTT 57.485 42.857 5.56 0.00 0.00 4.68
2602 2942 3.302365 TGTACTAACTAACCGCGCTTT 57.698 42.857 5.56 0.32 0.00 3.51
2603 2943 4.433186 TGTACTAACTAACCGCGCTTTA 57.567 40.909 5.56 1.71 0.00 1.85
2604 2944 4.804108 TGTACTAACTAACCGCGCTTTAA 58.196 39.130 5.56 0.00 0.00 1.52
2700 3040 2.407428 GCTGAGGTTTAAGCCCGGC 61.407 63.158 0.00 0.00 33.12 6.13
2724 3064 0.097150 CTCTTCGTCTCATCGCACGA 59.903 55.000 0.00 0.00 43.12 4.35
2727 3067 0.733150 TTCGTCTCATCGCACGATCT 59.267 50.000 1.86 0.00 44.16 2.75
2762 3105 6.072064 GGTACGTACCTCAAGCATCTATACAT 60.072 42.308 32.93 0.00 43.10 2.29
2792 3135 7.698970 TCGTTTGGTTACAGAAATTTTGAAGAC 59.301 33.333 0.00 0.00 0.00 3.01
2803 3146 9.318041 CAGAAATTTTGAAGACATGTACTTACG 57.682 33.333 0.00 0.00 0.00 3.18
3104 3463 2.381911 CTTCCCTGCATTATGTGGCTT 58.618 47.619 0.00 0.00 0.00 4.35
3128 3487 0.391597 TCAAGAAGCCGTCGAGGTTT 59.608 50.000 4.18 3.72 46.65 3.27
3155 3514 1.855213 CGTGGTGCATCAACTGGGTG 61.855 60.000 0.00 0.00 0.00 4.61
3158 3517 1.589716 GGTGCATCAACTGGGTGAGC 61.590 60.000 0.00 0.00 0.00 4.26
3159 3518 0.890542 GTGCATCAACTGGGTGAGCA 60.891 55.000 0.00 8.06 32.73 4.26
3162 3521 2.290832 TGCATCAACTGGGTGAGCATTA 60.291 45.455 8.06 0.00 31.27 1.90
3164 3557 3.614092 CATCAACTGGGTGAGCATTAGT 58.386 45.455 0.00 0.00 0.00 2.24
3168 3561 5.815581 TCAACTGGGTGAGCATTAGTATTT 58.184 37.500 0.00 0.00 0.00 1.40
3172 3565 6.116126 ACTGGGTGAGCATTAGTATTTTCTC 58.884 40.000 0.00 0.00 0.00 2.87
3173 3566 5.437060 TGGGTGAGCATTAGTATTTTCTCC 58.563 41.667 0.00 0.00 0.00 3.71
3175 3568 5.529060 GGGTGAGCATTAGTATTTTCTCCAG 59.471 44.000 0.00 0.00 0.00 3.86
3176 3569 6.349300 GGTGAGCATTAGTATTTTCTCCAGA 58.651 40.000 0.00 0.00 0.00 3.86
3177 3570 6.995091 GGTGAGCATTAGTATTTTCTCCAGAT 59.005 38.462 0.00 0.00 0.00 2.90
3178 3571 7.041508 GGTGAGCATTAGTATTTTCTCCAGATG 60.042 40.741 0.00 0.00 0.00 2.90
3185 3578 9.736414 ATTAGTATTTTCTCCAGATGATCATGG 57.264 33.333 14.30 11.17 37.97 3.66
3209 3602 7.720515 TGGCAATCATGAATACTCATATGTTCA 59.279 33.333 0.00 8.44 40.49 3.18
3210 3603 8.019669 GGCAATCATGAATACTCATATGTTCAC 58.980 37.037 0.00 0.00 40.49 3.18
3211 3604 8.781196 GCAATCATGAATACTCATATGTTCACT 58.219 33.333 0.00 0.00 40.49 3.41
3224 3617 6.972901 TCATATGTTCACTTACTCACATCGTC 59.027 38.462 1.90 0.00 32.15 4.20
3225 3618 3.909430 TGTTCACTTACTCACATCGTCC 58.091 45.455 0.00 0.00 0.00 4.79
3226 3619 3.572682 TGTTCACTTACTCACATCGTCCT 59.427 43.478 0.00 0.00 0.00 3.85
3227 3620 3.850122 TCACTTACTCACATCGTCCTG 57.150 47.619 0.00 0.00 0.00 3.86
3228 3621 3.418047 TCACTTACTCACATCGTCCTGA 58.582 45.455 0.00 0.00 0.00 3.86
3229 3622 3.190744 TCACTTACTCACATCGTCCTGAC 59.809 47.826 0.00 0.00 0.00 3.51
3230 3623 3.191581 CACTTACTCACATCGTCCTGACT 59.808 47.826 0.00 0.00 0.00 3.41
3231 3624 3.191581 ACTTACTCACATCGTCCTGACTG 59.808 47.826 0.00 0.00 0.00 3.51
3232 3625 1.911057 ACTCACATCGTCCTGACTGA 58.089 50.000 0.00 0.00 0.00 3.41
3233 3626 2.451490 ACTCACATCGTCCTGACTGAT 58.549 47.619 0.00 0.00 0.00 2.90
3234 3627 2.165234 ACTCACATCGTCCTGACTGATG 59.835 50.000 20.33 20.33 42.40 3.07
3235 3628 2.165234 CTCACATCGTCCTGACTGATGT 59.835 50.000 21.18 21.18 46.13 3.06
3236 3629 2.562738 TCACATCGTCCTGACTGATGTT 59.437 45.455 22.86 13.06 44.63 2.71
3237 3630 3.006859 TCACATCGTCCTGACTGATGTTT 59.993 43.478 22.86 9.99 44.63 2.83
3238 3631 3.748048 CACATCGTCCTGACTGATGTTTT 59.252 43.478 22.86 9.53 44.63 2.43
3239 3632 3.748048 ACATCGTCCTGACTGATGTTTTG 59.252 43.478 21.18 8.70 44.63 2.44
3240 3633 3.469008 TCGTCCTGACTGATGTTTTGT 57.531 42.857 0.00 0.00 0.00 2.83
3241 3634 3.804036 TCGTCCTGACTGATGTTTTGTT 58.196 40.909 0.00 0.00 0.00 2.83
3242 3635 4.196193 TCGTCCTGACTGATGTTTTGTTT 58.804 39.130 0.00 0.00 0.00 2.83
3243 3636 4.035091 TCGTCCTGACTGATGTTTTGTTTG 59.965 41.667 0.00 0.00 0.00 2.93
3244 3637 4.610945 GTCCTGACTGATGTTTTGTTTGG 58.389 43.478 0.00 0.00 0.00 3.28
3245 3638 4.097892 GTCCTGACTGATGTTTTGTTTGGT 59.902 41.667 0.00 0.00 0.00 3.67
3246 3639 4.709397 TCCTGACTGATGTTTTGTTTGGTT 59.291 37.500 0.00 0.00 0.00 3.67
3247 3640 4.805192 CCTGACTGATGTTTTGTTTGGTTG 59.195 41.667 0.00 0.00 0.00 3.77
3248 3641 4.180057 TGACTGATGTTTTGTTTGGTTGC 58.820 39.130 0.00 0.00 0.00 4.17
3249 3642 3.530535 ACTGATGTTTTGTTTGGTTGCC 58.469 40.909 0.00 0.00 0.00 4.52
3250 3643 2.871633 CTGATGTTTTGTTTGGTTGCCC 59.128 45.455 0.00 0.00 0.00 5.36
3251 3644 2.237143 TGATGTTTTGTTTGGTTGCCCA 59.763 40.909 0.00 0.00 39.65 5.36
3274 3667 5.088680 TCAGATATGCATAATCATCGGCA 57.911 39.130 11.13 0.00 41.00 5.69
3285 3678 0.807275 TCATCGGCATGCTTCTGTCG 60.807 55.000 18.92 11.53 45.28 4.35
3294 3687 1.891919 GCTTCTGTCGGTGTTGGCA 60.892 57.895 0.00 0.00 0.00 4.92
3318 3711 2.998949 GGAGGCCTCCGTTCCATT 59.001 61.111 35.77 0.00 40.36 3.16
3387 3781 0.107993 TCATGCAGCAGTCCAGCTAC 60.108 55.000 0.00 0.00 44.54 3.58
3388 3782 0.107800 CATGCAGCAGTCCAGCTACT 60.108 55.000 0.00 0.00 44.54 2.57
3390 3784 0.397941 TGCAGCAGTCCAGCTACTTT 59.602 50.000 0.00 0.00 44.54 2.66
3391 3785 0.801251 GCAGCAGTCCAGCTACTTTG 59.199 55.000 0.00 0.00 44.54 2.77
3395 3789 4.065088 CAGCAGTCCAGCTACTTTGTTAA 58.935 43.478 0.00 0.00 44.54 2.01
3403 3797 4.082571 CCAGCTACTTTGTTAAATGCAGCT 60.083 41.667 0.00 0.00 39.53 4.24
3409 3803 9.226345 GCTACTTTGTTAAATGCAGCTTATTAG 57.774 33.333 0.00 0.00 30.66 1.73
3483 3877 2.098934 GTGTGTTTGTGGATGTTGCTCA 59.901 45.455 0.00 0.00 0.00 4.26
3536 3935 3.633065 AGTGGAGGCGTTCTCTTAGATAC 59.367 47.826 7.61 0.00 42.10 2.24
3589 3994 4.082026 ACAATCAGCTTTATTGTTCAGCCC 60.082 41.667 15.39 0.00 43.31 5.19
3636 4067 1.993370 GCACCAGCGTAAGACAAGTAG 59.007 52.381 0.00 0.00 43.02 2.57
3641 4072 4.082895 ACCAGCGTAAGACAAGTAGTACAG 60.083 45.833 2.52 0.00 43.02 2.74
3644 4075 5.002516 AGCGTAAGACAAGTAGTACAGTCT 58.997 41.667 17.72 17.72 42.72 3.24
3646 4077 6.091986 AGCGTAAGACAAGTAGTACAGTCTAC 59.908 42.308 21.51 18.08 40.22 2.59
3647 4078 6.128445 GCGTAAGACAAGTAGTACAGTCTACA 60.128 42.308 21.51 13.52 40.22 2.74
3649 4080 8.115520 CGTAAGACAAGTAGTACAGTCTACATC 58.884 40.741 21.51 13.86 40.22 3.06
3650 4081 9.165035 GTAAGACAAGTAGTACAGTCTACATCT 57.835 37.037 21.51 12.43 40.22 2.90
3659 7945 5.881443 AGTACAGTCTACATCTAGCTTTCGT 59.119 40.000 0.00 0.00 0.00 3.85
3663 7949 8.090250 ACAGTCTACATCTAGCTTTCGTATAG 57.910 38.462 0.00 0.00 0.00 1.31
3742 8028 3.766051 GGGGAAGAACTAGGTTCGTCTAA 59.234 47.826 19.47 0.00 45.41 2.10
3750 8036 4.187694 ACTAGGTTCGTCTAACTACCGAG 58.812 47.826 0.00 0.00 38.75 4.63
3811 8100 1.554617 GCTCTTCTTCTTCCTCTGGCT 59.445 52.381 0.00 0.00 0.00 4.75
3815 8104 1.059098 TCTTCTTCCTCTGGCTGCAA 58.941 50.000 0.50 0.00 0.00 4.08
3850 8140 2.526046 CCCCTCACACCCCGACTTT 61.526 63.158 0.00 0.00 0.00 2.66
3862 8152 3.200483 CCCCGACTTTCCCGTATAAAAG 58.800 50.000 0.00 0.00 38.24 2.27
3863 8153 3.369787 CCCCGACTTTCCCGTATAAAAGT 60.370 47.826 0.43 0.43 45.77 2.66
3874 8164 6.949715 TCCCGTATAAAAGTACAAAGATGGT 58.050 36.000 0.00 0.00 0.00 3.55
3876 8166 8.538701 TCCCGTATAAAAGTACAAAGATGGTAA 58.461 33.333 0.00 0.00 0.00 2.85
3877 8167 9.333724 CCCGTATAAAAGTACAAAGATGGTAAT 57.666 33.333 0.00 0.00 0.00 1.89
3895 8185 8.874744 ATGGTAATATGAAATGGATGAGAAGG 57.125 34.615 0.00 0.00 0.00 3.46
3903 8193 4.494091 AATGGATGAGAAGGTACCACAG 57.506 45.455 15.94 0.00 33.38 3.66
4065 8360 8.313292 AGCCATTCTTGAGTTTGCAATAATAAA 58.687 29.630 0.00 0.00 0.00 1.40
4167 8463 8.696374 TCCAGTATAAAGAGATAACAGACCAAG 58.304 37.037 0.00 0.00 0.00 3.61
4233 8529 4.390297 GCTAGAACAAAGTCTCGCAAATCT 59.610 41.667 0.00 0.00 36.57 2.40
4248 8544 0.320771 AATCTCTGCCGCGTTTCAGT 60.321 50.000 4.92 0.00 0.00 3.41
4262 8571 3.087781 GTTTCAGTAGTAGGAGGACGGT 58.912 50.000 0.00 0.00 0.00 4.83
4405 8715 1.227999 ATGACGACGGCAAACCACAG 61.228 55.000 7.85 0.00 34.57 3.66
4424 8734 2.584673 AGGGACTCGGACAGTGATG 58.415 57.895 0.00 0.00 34.41 3.07
4441 8751 4.512914 GGGGAGGGCCAGTGCATC 62.513 72.222 6.18 0.00 40.13 3.91
4447 8757 1.604593 GGGCCAGTGCATCAACTGT 60.605 57.895 4.39 0.00 45.08 3.55
4453 8763 1.174712 AGTGCATCAACTGTGTGGCC 61.175 55.000 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.595133 AGAAAGATTAGAGTAGAACCCCTCG 59.405 44.000 0.00 0.00 32.88 4.63
3 4 7.255695 GCTAGAAAGATTAGAGTAGAACCCCTC 60.256 44.444 0.00 0.00 0.00 4.30
4 5 6.551975 GCTAGAAAGATTAGAGTAGAACCCCT 59.448 42.308 0.00 0.00 0.00 4.79
5 6 6.324254 TGCTAGAAAGATTAGAGTAGAACCCC 59.676 42.308 0.00 0.00 0.00 4.95
6 7 7.349412 TGCTAGAAAGATTAGAGTAGAACCC 57.651 40.000 0.00 0.00 0.00 4.11
57 58 9.288124 GCTGAAAACAAACAAAAATATTGCTTT 57.712 25.926 0.00 0.00 0.00 3.51
58 59 8.676401 AGCTGAAAACAAACAAAAATATTGCTT 58.324 25.926 0.00 0.00 0.00 3.91
76 77 8.237811 AGAGAAATGGACTAAAAAGCTGAAAA 57.762 30.769 0.00 0.00 0.00 2.29
108 109 6.257994 ACAATATCCATGCTATATGGGGAG 57.742 41.667 6.13 0.00 39.60 4.30
119 120 6.873076 TCACCTTTGAAAAACAATATCCATGC 59.127 34.615 0.00 0.00 38.36 4.06
204 205 8.546597 AACACTCAAGCTTGTAAAAATGTTTT 57.453 26.923 25.19 10.36 0.00 2.43
259 260 7.730364 AGTAACTTAGAATGTGTTCACCTTG 57.270 36.000 0.37 0.00 36.79 3.61
431 578 6.569780 GGTTCTTTTGGTTTCTCTTTGCTTA 58.430 36.000 0.00 0.00 0.00 3.09
433 580 4.440112 CGGTTCTTTTGGTTTCTCTTTGCT 60.440 41.667 0.00 0.00 0.00 3.91
461 608 1.067199 GCGCGCAGGTGATTTTTCTG 61.067 55.000 29.10 0.00 0.00 3.02
463 610 1.210155 AGCGCGCAGGTGATTTTTC 59.790 52.632 35.10 0.00 0.00 2.29
503 650 1.296715 CCACACAGGGCTAGACACC 59.703 63.158 0.00 0.00 0.00 4.16
515 662 1.597989 GTATACCACGCCCCACACA 59.402 57.895 0.00 0.00 0.00 3.72
516 663 1.519898 CGTATACCACGCCCCACAC 60.520 63.158 0.00 0.00 45.03 3.82
533 680 2.159296 TCCACATCCACGATCTAACACG 60.159 50.000 0.00 0.00 0.00 4.49
537 684 3.304829 TCCATCCACATCCACGATCTAA 58.695 45.455 0.00 0.00 0.00 2.10
538 685 2.957474 TCCATCCACATCCACGATCTA 58.043 47.619 0.00 0.00 0.00 1.98
543 690 3.016031 TCATTTTCCATCCACATCCACG 58.984 45.455 0.00 0.00 0.00 4.94
620 799 8.837788 TCATGTTTAGCATATACCAGATCAAG 57.162 34.615 0.00 0.00 35.74 3.02
660 839 2.154567 ACCCTATCTAACTGACGCCA 57.845 50.000 0.00 0.00 0.00 5.69
661 840 3.195661 CAAACCCTATCTAACTGACGCC 58.804 50.000 0.00 0.00 0.00 5.68
662 841 2.608090 GCAAACCCTATCTAACTGACGC 59.392 50.000 0.00 0.00 0.00 5.19
663 842 3.195661 GGCAAACCCTATCTAACTGACG 58.804 50.000 0.00 0.00 0.00 4.35
677 856 2.941583 AGGGAGGGAGGGCAAACC 60.942 66.667 0.00 0.00 40.67 3.27
678 857 1.925972 AGAGGGAGGGAGGGCAAAC 60.926 63.158 0.00 0.00 0.00 2.93
679 858 1.925455 CAGAGGGAGGGAGGGCAAA 60.925 63.158 0.00 0.00 0.00 3.68
680 859 2.285668 CAGAGGGAGGGAGGGCAA 60.286 66.667 0.00 0.00 0.00 4.52
681 860 3.615811 ACAGAGGGAGGGAGGGCA 61.616 66.667 0.00 0.00 0.00 5.36
682 861 3.086600 CACAGAGGGAGGGAGGGC 61.087 72.222 0.00 0.00 0.00 5.19
683 862 2.263099 ATCCACAGAGGGAGGGAGGG 62.263 65.000 0.00 0.00 41.08 4.30
684 863 0.327000 AATCCACAGAGGGAGGGAGG 60.327 60.000 0.00 0.00 41.08 4.30
686 865 0.326618 GGAATCCACAGAGGGAGGGA 60.327 60.000 0.00 0.00 41.08 4.20
687 866 0.327000 AGGAATCCACAGAGGGAGGG 60.327 60.000 0.61 0.00 41.08 4.30
689 868 0.749649 CGAGGAATCCACAGAGGGAG 59.250 60.000 0.61 0.00 41.08 4.30
690 869 0.687757 CCGAGGAATCCACAGAGGGA 60.688 60.000 0.61 0.00 42.21 4.20
691 870 0.978146 ACCGAGGAATCCACAGAGGG 60.978 60.000 0.61 0.00 38.24 4.30
692 871 0.461961 GACCGAGGAATCCACAGAGG 59.538 60.000 0.61 0.00 39.47 3.69
693 872 0.101399 CGACCGAGGAATCCACAGAG 59.899 60.000 0.61 0.00 0.00 3.35
694 873 1.945354 GCGACCGAGGAATCCACAGA 61.945 60.000 0.61 0.00 0.00 3.41
695 874 1.519455 GCGACCGAGGAATCCACAG 60.519 63.158 0.61 0.00 0.00 3.66
696 875 1.541310 AAGCGACCGAGGAATCCACA 61.541 55.000 0.61 0.00 0.00 4.17
697 876 0.806492 GAAGCGACCGAGGAATCCAC 60.806 60.000 0.61 0.00 0.00 4.02
698 877 1.515954 GAAGCGACCGAGGAATCCA 59.484 57.895 0.61 0.00 0.00 3.41
699 878 1.227292 GGAAGCGACCGAGGAATCC 60.227 63.158 0.00 0.00 0.00 3.01
700 879 4.421952 GGAAGCGACCGAGGAATC 57.578 61.111 0.00 0.00 0.00 2.52
718 897 4.796231 ACTGGACGACGCGCATCC 62.796 66.667 5.73 11.78 0.00 3.51
719 898 3.248171 GACTGGACGACGCGCATC 61.248 66.667 5.73 0.00 0.00 3.91
720 899 4.796231 GGACTGGACGACGCGCAT 62.796 66.667 5.73 0.00 0.00 4.73
723 902 3.103911 GTTGGACTGGACGACGCG 61.104 66.667 3.53 3.53 0.00 6.01
724 903 3.103911 CGTTGGACTGGACGACGC 61.104 66.667 0.00 0.00 41.53 5.19
725 904 2.430244 CCGTTGGACTGGACGACG 60.430 66.667 0.00 0.00 43.52 5.12
726 905 1.372623 GACCGTTGGACTGGACGAC 60.373 63.158 0.00 0.00 41.53 4.34
727 906 2.567497 GGACCGTTGGACTGGACGA 61.567 63.158 0.00 0.00 41.53 4.20
728 907 2.048503 GGACCGTTGGACTGGACG 60.049 66.667 0.00 0.00 38.90 4.79
729 908 2.048503 CGGACCGTTGGACTGGAC 60.049 66.667 5.48 0.00 0.00 4.02
730 909 2.522436 ACGGACCGTTGGACTGGA 60.522 61.111 15.37 0.00 36.35 3.86
731 910 2.048503 GACGGACCGTTGGACTGG 60.049 66.667 22.69 0.00 41.37 4.00
732 911 2.410638 TTCGACGGACCGTTGGACTG 62.411 60.000 29.67 12.69 41.37 3.51
733 912 2.195567 TTCGACGGACCGTTGGACT 61.196 57.895 29.67 3.06 41.37 3.85
734 913 2.018324 GTTCGACGGACCGTTGGAC 61.018 63.158 29.67 28.08 41.64 4.02
735 914 1.808531 ATGTTCGACGGACCGTTGGA 61.809 55.000 29.67 21.81 41.37 3.53
736 915 1.373748 ATGTTCGACGGACCGTTGG 60.374 57.895 29.67 20.55 41.37 3.77
737 916 1.623081 CCATGTTCGACGGACCGTTG 61.623 60.000 25.80 25.80 41.37 4.10
738 917 1.373748 CCATGTTCGACGGACCGTT 60.374 57.895 22.69 4.66 41.37 4.44
739 918 2.209064 CTCCATGTTCGACGGACCGT 62.209 60.000 21.93 21.93 45.10 4.83
740 919 1.516386 CTCCATGTTCGACGGACCG 60.516 63.158 13.61 13.61 0.00 4.79
741 920 1.810030 GCTCCATGTTCGACGGACC 60.810 63.158 3.28 0.00 0.00 4.46
742 921 2.158959 CGCTCCATGTTCGACGGAC 61.159 63.158 0.00 0.00 0.00 4.79
743 922 2.180769 CGCTCCATGTTCGACGGA 59.819 61.111 0.00 0.00 0.00 4.69
744 923 2.885644 CCGCTCCATGTTCGACGG 60.886 66.667 0.00 0.00 0.00 4.79
745 924 3.554692 GCCGCTCCATGTTCGACG 61.555 66.667 0.00 0.00 0.00 5.12
746 925 3.554692 CGCCGCTCCATGTTCGAC 61.555 66.667 0.00 0.00 0.00 4.20
747 926 4.812476 CCGCCGCTCCATGTTCGA 62.812 66.667 0.00 0.00 0.00 3.71
749 928 3.195698 GACCGCCGCTCCATGTTC 61.196 66.667 0.00 0.00 0.00 3.18
758 937 2.904470 TATAACCAACCGACCGCCGC 62.904 60.000 0.00 0.00 36.84 6.53
759 938 1.141449 TATAACCAACCGACCGCCG 59.859 57.895 0.00 0.00 38.18 6.46
760 939 1.147557 CGTATAACCAACCGACCGCC 61.148 60.000 0.00 0.00 0.00 6.13
761 940 1.147557 CCGTATAACCAACCGACCGC 61.148 60.000 0.00 0.00 0.00 5.68
762 941 1.147557 GCCGTATAACCAACCGACCG 61.148 60.000 0.00 0.00 0.00 4.79
763 942 1.147557 CGCCGTATAACCAACCGACC 61.148 60.000 0.00 0.00 0.00 4.79
771 950 0.963962 TGATCCTCCGCCGTATAACC 59.036 55.000 0.00 0.00 0.00 2.85
803 982 4.383602 ACCGCGTTTCGTGCATGC 62.384 61.111 11.82 11.82 35.94 4.06
804 983 2.202171 GACCGCGTTTCGTGCATG 60.202 61.111 4.92 0.00 35.94 4.06
807 986 3.401846 GATCGACCGCGTTTCGTGC 62.402 63.158 22.08 13.82 37.73 5.34
808 987 0.521867 TAGATCGACCGCGTTTCGTG 60.522 55.000 22.08 1.98 37.73 4.35
824 1033 2.597805 GGCTCCTCGGCCGATAGA 60.598 66.667 31.23 27.00 42.82 1.98
851 1060 3.725459 CAACCGCGTGCATGCAGA 61.725 61.111 29.23 0.00 34.15 4.26
931 1164 3.832704 CAGTAACGACCTGCCATCA 57.167 52.632 0.00 0.00 0.00 3.07
989 1224 2.188994 CCTAGCCAGCTGCCAGAC 59.811 66.667 8.66 0.00 42.71 3.51
990 1225 1.903877 GAACCTAGCCAGCTGCCAGA 61.904 60.000 8.66 0.00 42.71 3.86
992 1227 1.565390 ATGAACCTAGCCAGCTGCCA 61.565 55.000 8.66 0.00 42.71 4.92
993 1228 0.394899 AATGAACCTAGCCAGCTGCC 60.395 55.000 8.66 0.00 42.71 4.85
995 1230 1.673168 GGAATGAACCTAGCCAGCTG 58.327 55.000 6.78 6.78 0.00 4.24
996 1231 0.548510 GGGAATGAACCTAGCCAGCT 59.451 55.000 0.00 0.00 0.00 4.24
998 1233 1.202580 CGAGGGAATGAACCTAGCCAG 60.203 57.143 0.00 0.00 38.79 4.85
999 1234 0.830648 CGAGGGAATGAACCTAGCCA 59.169 55.000 0.00 0.00 38.79 4.75
1001 1236 0.106894 CCCGAGGGAATGAACCTAGC 59.893 60.000 0.84 0.00 38.79 3.42
1002 1237 1.789523 TCCCGAGGGAATGAACCTAG 58.210 55.000 8.71 0.00 42.05 3.02
1040 1280 7.723382 AGGAAGGATGGATGGATAGATACTAA 58.277 38.462 0.00 0.00 0.00 2.24
1059 1299 2.246091 ACCTCAGAGGAGAAGGAAGG 57.754 55.000 24.45 0.00 44.26 3.46
1060 1300 4.803452 AGATACCTCAGAGGAGAAGGAAG 58.197 47.826 24.45 0.00 44.26 3.46
1061 1301 4.687494 CGAGATACCTCAGAGGAGAAGGAA 60.687 50.000 24.45 0.00 44.26 3.36
1062 1302 3.181449 CGAGATACCTCAGAGGAGAAGGA 60.181 52.174 24.45 1.26 44.26 3.36
1063 1303 3.146066 CGAGATACCTCAGAGGAGAAGG 58.854 54.545 24.45 3.82 44.26 3.46
1064 1304 4.065088 CTCGAGATACCTCAGAGGAGAAG 58.935 52.174 24.45 8.95 44.26 2.85
1065 1305 3.712218 TCTCGAGATACCTCAGAGGAGAA 59.288 47.826 24.45 8.35 44.26 2.87
1066 1306 3.310193 TCTCGAGATACCTCAGAGGAGA 58.690 50.000 24.45 10.42 44.26 3.71
1080 1320 1.437772 GCGAACGGGATCTCTCGAGA 61.438 60.000 15.70 15.70 42.37 4.04
1135 1381 1.430632 CTCGTGTTCATGGCCATGC 59.569 57.895 36.47 25.10 38.65 4.06
1164 1415 2.261671 CAGGTCCTTGTCCGACGG 59.738 66.667 7.84 7.84 0.00 4.79
1178 1429 0.109086 AGTCGTCGATGTTCTGCAGG 60.109 55.000 15.13 0.00 0.00 4.85
1185 1436 1.738099 GCAGCCAGTCGTCGATGTT 60.738 57.895 4.21 0.00 0.00 2.71
1313 1564 3.583276 CTGAGCGGGCACGTACCAA 62.583 63.158 11.45 0.00 43.45 3.67
1366 1677 1.069636 GGCGAAATCCAATCTGATCGC 60.070 52.381 10.18 10.18 37.29 4.58
1493 1820 6.111382 CGCCTATGTTGGATCTTCATATCAT 58.889 40.000 0.00 0.00 0.00 2.45
1495 1822 4.872691 CCGCCTATGTTGGATCTTCATATC 59.127 45.833 0.00 0.00 0.00 1.63
1496 1823 4.836825 CCGCCTATGTTGGATCTTCATAT 58.163 43.478 0.00 0.00 0.00 1.78
1498 1825 2.811873 GCCGCCTATGTTGGATCTTCAT 60.812 50.000 0.00 0.00 0.00 2.57
1500 1827 1.230324 GCCGCCTATGTTGGATCTTC 58.770 55.000 0.00 0.00 0.00 2.87
1519 1849 8.480643 AAAACCTCACTATAAATCTCAAGTCG 57.519 34.615 0.00 0.00 0.00 4.18
1551 1885 4.686191 TTGTGATGCCAAAATGGTTTCT 57.314 36.364 0.00 0.00 40.46 2.52
1619 1953 2.628178 TCCGCGGACATAATTCATCTCT 59.372 45.455 27.28 0.00 0.00 3.10
1662 1998 5.163864 ACAGTACATGAATGCACACGTAATG 60.164 40.000 8.75 8.75 32.97 1.90
1664 2000 4.311606 ACAGTACATGAATGCACACGTAA 58.688 39.130 0.00 0.00 0.00 3.18
1680 2020 9.959749 TGTGAAAAGGAATAATGAAAACAGTAC 57.040 29.630 0.00 0.00 0.00 2.73
1693 2033 3.010138 CAGGACCCCTGTGAAAAGGAATA 59.990 47.826 4.88 0.00 45.82 1.75
2194 2534 3.339141 GCTAAGGAAGTTGAAGGTCCTG 58.661 50.000 0.00 0.00 41.03 3.86
2284 2624 3.090532 GGCTTCTCGGGGGTGGAT 61.091 66.667 0.00 0.00 0.00 3.41
2342 2682 2.951745 GCAGATGGCGACGACGAG 60.952 66.667 12.29 0.00 42.66 4.18
2407 2747 2.093973 GGTGATGAGGATGTTGTCGTCT 60.094 50.000 0.00 0.00 41.27 4.18
2510 2850 3.785499 TGCGACGACGAGGACGAG 61.785 66.667 12.29 0.00 42.66 4.18
2516 2856 0.729478 AGAATGTGTGCGACGACGAG 60.729 55.000 12.29 0.00 42.66 4.18
2527 2867 7.716998 ACACAAAGTAATCTCAGAAGAATGTGT 59.283 33.333 7.93 7.93 34.49 3.72
2528 2868 8.092521 ACACAAAGTAATCTCAGAAGAATGTG 57.907 34.615 0.00 0.00 34.49 3.21
2529 2869 8.153550 AGACACAAAGTAATCTCAGAAGAATGT 58.846 33.333 0.00 0.00 34.49 2.71
2530 2870 8.545229 AGACACAAAGTAATCTCAGAAGAATG 57.455 34.615 0.00 0.00 34.49 2.67
2531 2871 8.997323 CAAGACACAAAGTAATCTCAGAAGAAT 58.003 33.333 0.00 0.00 34.49 2.40
2534 2874 7.721286 ACAAGACACAAAGTAATCTCAGAAG 57.279 36.000 0.00 0.00 0.00 2.85
2546 2886 6.451393 AGCTAGAGTAGAACAAGACACAAAG 58.549 40.000 0.00 0.00 0.00 2.77
2570 2910 9.638239 CGGTTAGTTAGTACATACTTGGTTAAA 57.362 33.333 5.38 0.00 37.73 1.52
2571 2911 7.759433 GCGGTTAGTTAGTACATACTTGGTTAA 59.241 37.037 5.38 0.00 37.73 2.01
2572 2912 7.257722 GCGGTTAGTTAGTACATACTTGGTTA 58.742 38.462 5.38 0.00 37.73 2.85
2574 2914 5.654497 GCGGTTAGTTAGTACATACTTGGT 58.346 41.667 5.38 0.00 37.73 3.67
2575 2915 4.736793 CGCGGTTAGTTAGTACATACTTGG 59.263 45.833 0.00 0.00 37.73 3.61
2576 2916 4.205792 GCGCGGTTAGTTAGTACATACTTG 59.794 45.833 8.83 0.00 37.73 3.16
2577 2917 4.096984 AGCGCGGTTAGTTAGTACATACTT 59.903 41.667 4.23 0.00 37.73 2.24
2578 2918 3.629398 AGCGCGGTTAGTTAGTACATACT 59.371 43.478 4.23 0.11 40.24 2.12
2579 2919 3.957468 AGCGCGGTTAGTTAGTACATAC 58.043 45.455 4.23 0.00 0.00 2.39
2580 2920 4.637483 AAGCGCGGTTAGTTAGTACATA 57.363 40.909 23.79 0.00 0.00 2.29
2581 2921 3.515330 AAGCGCGGTTAGTTAGTACAT 57.485 42.857 23.79 0.00 0.00 2.29
2582 2922 3.302365 AAAGCGCGGTTAGTTAGTACA 57.698 42.857 25.31 0.00 0.00 2.90
2583 2923 5.956171 ATTAAAGCGCGGTTAGTTAGTAC 57.044 39.130 25.31 0.00 0.00 2.73
2584 2924 5.868801 ACAATTAAAGCGCGGTTAGTTAGTA 59.131 36.000 25.31 8.91 0.00 1.82
2585 2925 4.692155 ACAATTAAAGCGCGGTTAGTTAGT 59.308 37.500 25.31 16.81 0.00 2.24
2586 2926 5.019498 CACAATTAAAGCGCGGTTAGTTAG 58.981 41.667 25.31 16.18 0.00 2.34
2587 2927 4.669708 GCACAATTAAAGCGCGGTTAGTTA 60.670 41.667 25.31 10.48 0.00 2.24
2588 2928 3.817238 CACAATTAAAGCGCGGTTAGTT 58.183 40.909 25.31 15.67 0.00 2.24
2700 3040 0.248825 CGATGAGACGAAGAGGCCAG 60.249 60.000 5.01 0.00 35.09 4.85
2744 3084 8.526667 ACGATATATGTATAGATGCTTGAGGT 57.473 34.615 0.00 0.00 0.00 3.85
2745 3085 9.809096 AAACGATATATGTATAGATGCTTGAGG 57.191 33.333 0.00 0.00 0.00 3.86
2747 3087 9.586435 CCAAACGATATATGTATAGATGCTTGA 57.414 33.333 0.00 0.00 0.00 3.02
2772 3115 9.394477 GTACATGTCTTCAAAATTTCTGTAACC 57.606 33.333 0.00 0.00 0.00 2.85
2787 3130 7.829378 AAATCTTCCGTAAGTACATGTCTTC 57.171 36.000 0.00 0.00 34.13 2.87
2792 3135 8.188799 TCAGAGTAAATCTTCCGTAAGTACATG 58.811 37.037 0.00 0.00 35.47 3.21
2803 3146 7.543868 CCGATCATACATCAGAGTAAATCTTCC 59.456 40.741 0.00 0.00 35.47 3.46
3005 3353 9.971922 CATCATGTGATTTACTACTGTAGATCA 57.028 33.333 21.01 15.57 43.50 2.92
3012 3363 7.550551 ACTGGTTCATCATGTGATTTACTACTG 59.449 37.037 0.00 0.00 36.54 2.74
3104 3463 0.320334 TCGACGGCTTCTTGATTGCA 60.320 50.000 0.00 0.00 0.00 4.08
3119 3478 1.654105 CACGACATGCTAAACCTCGAC 59.346 52.381 6.63 0.00 0.00 4.20
3120 3479 1.403647 CCACGACATGCTAAACCTCGA 60.404 52.381 6.63 0.00 0.00 4.04
3128 3487 0.248843 TGATGCACCACGACATGCTA 59.751 50.000 10.06 0.00 42.55 3.49
3155 3514 8.845413 ATCATCTGGAGAAAATACTAATGCTC 57.155 34.615 0.00 0.00 0.00 4.26
3159 3518 9.736414 CCATGATCATCTGGAGAAAATACTAAT 57.264 33.333 9.41 0.00 34.24 1.73
3162 3521 6.002704 GCCATGATCATCTGGAGAAAATACT 58.997 40.000 17.84 0.00 34.24 2.12
3164 3557 5.944135 TGCCATGATCATCTGGAGAAAATA 58.056 37.500 17.84 0.00 34.24 1.40
3168 3561 3.937778 TTGCCATGATCATCTGGAGAA 57.062 42.857 17.84 7.59 34.24 2.87
3184 3577 8.019669 GTGAACATATGAGTATTCATGATTGCC 58.980 37.037 10.38 3.57 43.76 4.52
3185 3578 8.781196 AGTGAACATATGAGTATTCATGATTGC 58.219 33.333 10.38 0.00 43.76 3.56
3193 3586 9.803315 TGTGAGTAAGTGAACATATGAGTATTC 57.197 33.333 10.38 3.30 0.00 1.75
3196 3589 8.129211 CGATGTGAGTAAGTGAACATATGAGTA 58.871 37.037 10.38 0.00 33.51 2.59
3204 3597 3.572682 AGGACGATGTGAGTAAGTGAACA 59.427 43.478 0.00 0.00 0.00 3.18
3205 3598 3.921021 CAGGACGATGTGAGTAAGTGAAC 59.079 47.826 0.00 0.00 0.00 3.18
3209 3602 3.191581 CAGTCAGGACGATGTGAGTAAGT 59.808 47.826 0.00 0.00 36.20 2.24
3210 3603 3.440522 TCAGTCAGGACGATGTGAGTAAG 59.559 47.826 0.00 0.00 36.20 2.34
3211 3604 3.418047 TCAGTCAGGACGATGTGAGTAA 58.582 45.455 0.00 0.00 36.20 2.24
3212 3605 3.067684 TCAGTCAGGACGATGTGAGTA 57.932 47.619 0.00 0.00 36.20 2.59
3214 3607 2.165234 ACATCAGTCAGGACGATGTGAG 59.835 50.000 24.83 10.65 44.92 3.51
3215 3608 2.171003 ACATCAGTCAGGACGATGTGA 58.829 47.619 24.83 12.59 44.92 3.58
3216 3609 2.662006 ACATCAGTCAGGACGATGTG 57.338 50.000 24.83 13.37 44.92 3.21
3217 3610 3.685139 AAACATCAGTCAGGACGATGT 57.315 42.857 22.29 22.29 46.60 3.06
3224 3617 4.654091 ACCAAACAAAACATCAGTCAGG 57.346 40.909 0.00 0.00 0.00 3.86
3225 3618 4.268405 GCAACCAAACAAAACATCAGTCAG 59.732 41.667 0.00 0.00 0.00 3.51
3226 3619 4.180057 GCAACCAAACAAAACATCAGTCA 58.820 39.130 0.00 0.00 0.00 3.41
3227 3620 3.555547 GGCAACCAAACAAAACATCAGTC 59.444 43.478 0.00 0.00 0.00 3.51
3228 3621 3.530535 GGCAACCAAACAAAACATCAGT 58.469 40.909 0.00 0.00 0.00 3.41
3244 3637 5.416639 TGATTATGCATATCTGATGGGCAAC 59.583 40.000 17.82 11.87 38.08 4.17
3245 3638 5.572252 TGATTATGCATATCTGATGGGCAA 58.428 37.500 17.82 7.02 38.08 4.52
3246 3639 5.182169 TGATTATGCATATCTGATGGGCA 57.818 39.130 16.71 16.71 39.03 5.36
3247 3640 5.049612 CGATGATTATGCATATCTGATGGGC 60.050 44.000 7.36 4.54 0.00 5.36
3248 3641 5.469084 CCGATGATTATGCATATCTGATGGG 59.531 44.000 7.36 5.28 0.00 4.00
3249 3642 5.049612 GCCGATGATTATGCATATCTGATGG 60.050 44.000 7.36 7.57 0.00 3.51
3250 3643 5.526111 TGCCGATGATTATGCATATCTGATG 59.474 40.000 7.36 0.00 0.00 3.07
3251 3644 5.677567 TGCCGATGATTATGCATATCTGAT 58.322 37.500 7.36 0.00 0.00 2.90
3274 3667 1.237285 GCCAACACCGACAGAAGCAT 61.237 55.000 0.00 0.00 0.00 3.79
3318 3711 7.727578 TTGGTAGGTCTTGTAGTTGATGATA 57.272 36.000 0.00 0.00 0.00 2.15
3387 3781 8.749499 GCATCTAATAAGCTGCATTTAACAAAG 58.251 33.333 1.02 0.00 43.01 2.77
3388 3782 8.249638 TGCATCTAATAAGCTGCATTTAACAAA 58.750 29.630 1.02 0.00 46.90 2.83
3390 3784 7.332213 TGCATCTAATAAGCTGCATTTAACA 57.668 32.000 1.02 0.00 46.90 2.41
3403 3797 8.482943 AGGTAACACACACTATGCATCTAATAA 58.517 33.333 0.19 0.00 41.41 1.40
3409 3803 4.695455 ACAAGGTAACACACACTATGCATC 59.305 41.667 0.19 0.00 41.41 3.91
3483 3877 9.304731 CATTGATTTCAATATCACAAACCGATT 57.695 29.630 5.52 0.00 44.10 3.34
3536 3935 5.050159 TCAGAACGAACTGACATTTCACATG 60.050 40.000 10.93 0.00 41.21 3.21
3589 3994 0.809636 TGCATCAACATACTCCGGCG 60.810 55.000 0.00 0.00 0.00 6.46
3636 4067 6.121613 ACGAAAGCTAGATGTAGACTGTAC 57.878 41.667 0.05 0.00 0.00 2.90
3641 4072 8.776470 ACTTCTATACGAAAGCTAGATGTAGAC 58.224 37.037 0.05 0.00 36.33 2.59
3649 4080 8.657729 TCGATGATACTTCTATACGAAAGCTAG 58.342 37.037 0.00 0.00 0.00 3.42
3650 4081 8.543862 TCGATGATACTTCTATACGAAAGCTA 57.456 34.615 0.00 0.00 0.00 3.32
3672 7958 9.483916 TCACATTTTCTTATTTTCTACACTCGA 57.516 29.630 0.00 0.00 0.00 4.04
3716 8002 4.359996 ACGAACCTAGTTCTTCCCCTTAT 58.640 43.478 5.97 0.00 40.05 1.73
3717 8003 3.766051 GACGAACCTAGTTCTTCCCCTTA 59.234 47.826 5.97 0.00 40.05 2.69
3719 8005 2.177734 GACGAACCTAGTTCTTCCCCT 58.822 52.381 5.97 0.00 40.05 4.79
3724 8010 5.123027 CGGTAGTTAGACGAACCTAGTTCTT 59.877 44.000 5.97 0.00 40.05 2.52
3725 8011 4.633565 CGGTAGTTAGACGAACCTAGTTCT 59.366 45.833 5.97 0.00 40.05 3.01
3742 8028 1.002087 CTGAAAAGGGTGCTCGGTAGT 59.998 52.381 0.00 0.00 0.00 2.73
3750 8036 3.026630 GCCTTAAACTGAAAAGGGTGC 57.973 47.619 3.48 0.00 42.19 5.01
3811 8100 3.625764 GGAAGAAATAGCATACGGTTGCA 59.374 43.478 13.36 0.00 45.23 4.08
3815 8104 3.046374 AGGGGAAGAAATAGCATACGGT 58.954 45.455 0.00 0.00 0.00 4.83
3850 8140 6.949715 ACCATCTTTGTACTTTTATACGGGA 58.050 36.000 0.00 0.00 0.00 5.14
3874 8164 8.944138 TGGTACCTTCTCATCCATTTCATATTA 58.056 33.333 14.36 0.00 0.00 0.98
3876 8166 7.147320 TGTGGTACCTTCTCATCCATTTCATAT 60.147 37.037 14.36 0.00 0.00 1.78
3877 8167 6.157820 TGTGGTACCTTCTCATCCATTTCATA 59.842 38.462 14.36 0.00 0.00 2.15
3918 8212 6.515832 GGTGTGGTTTTCATCTTTCAATCTT 58.484 36.000 0.00 0.00 0.00 2.40
3921 8215 4.340950 ACGGTGTGGTTTTCATCTTTCAAT 59.659 37.500 0.00 0.00 0.00 2.57
3924 8218 3.982576 ACGGTGTGGTTTTCATCTTTC 57.017 42.857 0.00 0.00 0.00 2.62
4065 8360 0.243095 GGACTAAGACGAACCGCACT 59.757 55.000 0.00 0.00 0.00 4.40
4233 8529 0.883153 TACTACTGAAACGCGGCAGA 59.117 50.000 25.52 12.54 36.07 4.26
4248 8544 2.224378 CCATCGTACCGTCCTCCTACTA 60.224 54.545 0.00 0.00 0.00 1.82
4274 8583 2.792947 CGCCGTATACTGCCACCCT 61.793 63.158 12.94 0.00 0.00 4.34
4325 8634 2.677228 CAAATCCACCGGCCTCCT 59.323 61.111 0.00 0.00 0.00 3.69
4366 8676 1.444933 TGTCATCAGGGTTCCCTTGT 58.555 50.000 7.79 0.00 33.50 3.16
4381 8691 0.584396 GTTTGCCGTCGTCATTGTCA 59.416 50.000 0.00 0.00 0.00 3.58
4389 8699 1.594293 CTCTGTGGTTTGCCGTCGT 60.594 57.895 0.00 0.00 37.67 4.34
4405 8715 0.457851 CATCACTGTCCGAGTCCCTC 59.542 60.000 0.00 0.00 29.75 4.30
4414 8724 3.049080 GCCCTCCCCATCACTGTCC 62.049 68.421 0.00 0.00 0.00 4.02
4424 8734 4.512914 GATGCACTGGCCCTCCCC 62.513 72.222 0.00 0.00 40.13 4.81
4441 8751 3.716006 CGCTCGGCCACACAGTTG 61.716 66.667 2.24 0.00 0.00 3.16
4453 8763 2.736995 TTCCGTTGCTTCCGCTCG 60.737 61.111 0.00 0.00 36.97 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.