Multiple sequence alignment - TraesCS7B01G059900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G059900 chr7B 100.000 3345 0 0 1 3345 62663966 62660622 0.000000e+00 6178
1 TraesCS7B01G059900 chr7B 96.359 769 26 2 1 768 591376186 591375419 0.000000e+00 1264
2 TraesCS7B01G059900 chr7B 81.818 330 54 4 1165 1488 677085040 677085369 4.250000e-69 272
3 TraesCS7B01G059900 chr7D 93.945 1503 64 13 893 2386 104531859 104530375 0.000000e+00 2246
4 TraesCS7B01G059900 chr7D 93.398 727 29 9 2631 3345 104529239 104528520 0.000000e+00 1059
5 TraesCS7B01G059900 chr7D 98.571 70 1 0 836 905 104531950 104531881 1.260000e-24 124
6 TraesCS7B01G059900 chr7A 93.153 1329 70 8 836 2149 108767648 108766326 0.000000e+00 1930
7 TraesCS7B01G059900 chr7A 87.697 634 58 17 2719 3345 108763002 108762382 0.000000e+00 721
8 TraesCS7B01G059900 chr7A 78.720 578 103 11 1345 1912 690537788 690537221 5.270000e-98 368
9 TraesCS7B01G059900 chr7A 89.302 215 20 2 2115 2327 108766396 108766183 1.980000e-67 267
10 TraesCS7B01G059900 chr4A 96.234 770 25 4 1 768 666807478 666806711 0.000000e+00 1258
11 TraesCS7B01G059900 chr4A 85.417 144 21 0 1643 1786 649055476 649055619 2.080000e-32 150
12 TraesCS7B01G059900 chr4A 84.722 144 22 0 1643 1786 649005687 649005830 9.670000e-31 145
13 TraesCS7B01G059900 chr1B 96.345 766 27 1 1 766 491701632 491702396 0.000000e+00 1258
14 TraesCS7B01G059900 chr1B 96.084 766 26 4 1 765 426919404 426920166 0.000000e+00 1245
15 TraesCS7B01G059900 chr6B 95.839 769 28 4 1 767 669340466 669341232 0.000000e+00 1240
16 TraesCS7B01G059900 chr6B 95.195 770 27 6 1 768 135894401 135895162 0.000000e+00 1208
17 TraesCS7B01G059900 chr2B 95.703 768 31 2 1 767 674723831 674724597 0.000000e+00 1234
18 TraesCS7B01G059900 chr1A 94.839 775 35 4 1 773 509772201 509771430 0.000000e+00 1205
19 TraesCS7B01G059900 chr1A 93.806 775 38 8 1 773 509488931 509488165 0.000000e+00 1157


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G059900 chr7B 62660622 62663966 3344 True 6178.000000 6178 100.000000 1 3345 1 chr7B.!!$R1 3344
1 TraesCS7B01G059900 chr7B 591375419 591376186 767 True 1264.000000 1264 96.359000 1 768 1 chr7B.!!$R2 767
2 TraesCS7B01G059900 chr7D 104528520 104531950 3430 True 1143.000000 2246 95.304667 836 3345 3 chr7D.!!$R1 2509
3 TraesCS7B01G059900 chr7A 108762382 108767648 5266 True 972.666667 1930 90.050667 836 3345 3 chr7A.!!$R2 2509
4 TraesCS7B01G059900 chr7A 690537221 690537788 567 True 368.000000 368 78.720000 1345 1912 1 chr7A.!!$R1 567
5 TraesCS7B01G059900 chr4A 666806711 666807478 767 True 1258.000000 1258 96.234000 1 768 1 chr4A.!!$R1 767
6 TraesCS7B01G059900 chr1B 491701632 491702396 764 False 1258.000000 1258 96.345000 1 766 1 chr1B.!!$F2 765
7 TraesCS7B01G059900 chr1B 426919404 426920166 762 False 1245.000000 1245 96.084000 1 765 1 chr1B.!!$F1 764
8 TraesCS7B01G059900 chr6B 669340466 669341232 766 False 1240.000000 1240 95.839000 1 767 1 chr6B.!!$F2 766
9 TraesCS7B01G059900 chr6B 135894401 135895162 761 False 1208.000000 1208 95.195000 1 768 1 chr6B.!!$F1 767
10 TraesCS7B01G059900 chr2B 674723831 674724597 766 False 1234.000000 1234 95.703000 1 767 1 chr2B.!!$F1 766
11 TraesCS7B01G059900 chr1A 509771430 509772201 771 True 1205.000000 1205 94.839000 1 773 1 chr1A.!!$R2 772
12 TraesCS7B01G059900 chr1A 509488165 509488931 766 True 1157.000000 1157 93.806000 1 773 1 chr1A.!!$R1 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 820 0.389757 TACGGGCGCATGTGCTAATA 59.61 50.0 28.86 15.96 39.32 0.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2723 5223 0.034896 AAGACTTGCACCTACCCACG 59.965 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 108 1.274447 ACCTCCAACGGTAGTAGCAAC 59.726 52.381 0.00 0.00 34.94 4.17
226 231 1.639280 CAACAACGGTTGCAGCTTTT 58.361 45.000 20.20 3.72 46.98 2.27
327 332 4.153475 GTGACGGTTGCAACACTTGTATAT 59.847 41.667 29.55 4.88 0.00 0.86
546 552 2.443394 CGCTGGGGAGATTGGGCTA 61.443 63.158 0.00 0.00 0.00 3.93
676 684 4.119363 GGCTGCAGCAGATGGGGA 62.119 66.667 37.63 0.00 44.36 4.81
692 700 2.279120 GAGCGGATGCAGGTCTCG 60.279 66.667 0.00 0.00 46.23 4.04
769 777 2.034179 GTCTCCAAACGTTTCCCTTTGG 59.966 50.000 11.37 9.38 45.43 3.28
773 781 2.694109 CCAAACGTTTCCCTTTGGGTTA 59.306 45.455 11.37 0.00 44.74 2.85
774 782 3.322541 CCAAACGTTTCCCTTTGGGTTAT 59.677 43.478 11.37 0.00 44.74 1.89
775 783 4.523558 CCAAACGTTTCCCTTTGGGTTATA 59.476 41.667 11.37 0.00 44.74 0.98
776 784 5.186215 CCAAACGTTTCCCTTTGGGTTATAT 59.814 40.000 11.37 0.00 44.74 0.86
777 785 5.907866 AACGTTTCCCTTTGGGTTATATG 57.092 39.130 0.00 0.00 44.74 1.78
778 786 4.925836 ACGTTTCCCTTTGGGTTATATGT 58.074 39.130 2.25 0.00 44.74 2.29
779 787 5.326900 ACGTTTCCCTTTGGGTTATATGTT 58.673 37.500 2.25 0.00 44.74 2.71
780 788 5.776208 ACGTTTCCCTTTGGGTTATATGTTT 59.224 36.000 2.25 0.00 44.74 2.83
781 789 6.268158 ACGTTTCCCTTTGGGTTATATGTTTT 59.732 34.615 2.25 0.00 44.74 2.43
782 790 6.809689 CGTTTCCCTTTGGGTTATATGTTTTC 59.190 38.462 2.25 0.00 44.74 2.29
783 791 6.860790 TTCCCTTTGGGTTATATGTTTTCC 57.139 37.500 2.25 0.00 44.74 3.13
784 792 4.951094 TCCCTTTGGGTTATATGTTTTCCG 59.049 41.667 2.25 0.00 44.74 4.30
785 793 4.707934 CCCTTTGGGTTATATGTTTTCCGT 59.292 41.667 0.00 0.00 38.25 4.69
786 794 5.186215 CCCTTTGGGTTATATGTTTTCCGTT 59.814 40.000 0.00 0.00 38.25 4.44
787 795 6.096695 CCTTTGGGTTATATGTTTTCCGTTG 58.903 40.000 0.00 0.00 0.00 4.10
788 796 4.705337 TGGGTTATATGTTTTCCGTTGC 57.295 40.909 0.00 0.00 0.00 4.17
789 797 4.079970 TGGGTTATATGTTTTCCGTTGCA 58.920 39.130 0.00 0.00 0.00 4.08
790 798 4.523173 TGGGTTATATGTTTTCCGTTGCAA 59.477 37.500 0.00 0.00 0.00 4.08
791 799 5.186021 TGGGTTATATGTTTTCCGTTGCAAT 59.814 36.000 0.59 0.00 0.00 3.56
792 800 5.518487 GGGTTATATGTTTTCCGTTGCAATG 59.482 40.000 11.90 11.90 0.00 2.82
793 801 6.096695 GGTTATATGTTTTCCGTTGCAATGT 58.903 36.000 17.19 0.00 0.00 2.71
794 802 7.251994 GGTTATATGTTTTCCGTTGCAATGTA 58.748 34.615 17.19 0.00 0.00 2.29
795 803 7.219344 GGTTATATGTTTTCCGTTGCAATGTAC 59.781 37.037 17.19 9.87 0.00 2.90
796 804 2.988343 TGTTTTCCGTTGCAATGTACG 58.012 42.857 17.19 9.69 37.50 3.67
800 808 2.097538 CGTTGCAATGTACGGGCG 59.902 61.111 10.65 0.00 34.30 6.13
801 809 2.202427 GTTGCAATGTACGGGCGC 60.202 61.111 0.59 0.00 0.00 6.53
802 810 2.669910 TTGCAATGTACGGGCGCA 60.670 55.556 10.83 0.00 0.00 6.09
803 811 2.043405 TTGCAATGTACGGGCGCAT 61.043 52.632 10.83 0.00 31.67 4.73
804 812 2.024588 GCAATGTACGGGCGCATG 59.975 61.111 10.83 2.43 0.00 4.06
805 813 2.760159 GCAATGTACGGGCGCATGT 61.760 57.895 10.83 9.64 0.00 3.21
806 814 1.062365 CAATGTACGGGCGCATGTG 59.938 57.895 10.83 0.66 0.00 3.21
807 815 2.760159 AATGTACGGGCGCATGTGC 61.760 57.895 23.05 23.05 37.78 4.57
808 816 3.680620 ATGTACGGGCGCATGTGCT 62.681 57.895 28.86 13.50 39.32 4.40
809 817 2.202824 GTACGGGCGCATGTGCTA 60.203 61.111 28.86 12.46 39.32 3.49
810 818 1.812093 GTACGGGCGCATGTGCTAA 60.812 57.895 28.86 10.66 39.32 3.09
811 819 1.145156 TACGGGCGCATGTGCTAAT 59.855 52.632 28.86 16.90 39.32 1.73
812 820 0.389757 TACGGGCGCATGTGCTAATA 59.610 50.000 28.86 15.96 39.32 0.98
813 821 0.462937 ACGGGCGCATGTGCTAATAA 60.463 50.000 28.86 0.00 39.32 1.40
814 822 0.660488 CGGGCGCATGTGCTAATAAA 59.340 50.000 28.86 0.00 39.32 1.40
815 823 1.064803 CGGGCGCATGTGCTAATAAAA 59.935 47.619 28.86 0.00 39.32 1.52
816 824 2.478709 CGGGCGCATGTGCTAATAAAAA 60.479 45.455 28.86 0.00 39.32 1.94
905 913 0.465642 GATCCCAATCCAACCGACCC 60.466 60.000 0.00 0.00 0.00 4.46
906 914 2.265467 ATCCCAATCCAACCGACCCG 62.265 60.000 0.00 0.00 0.00 5.28
907 915 2.666207 CCAATCCAACCGACCCGA 59.334 61.111 0.00 0.00 0.00 5.14
908 916 1.003112 CCAATCCAACCGACCCGAA 60.003 57.895 0.00 0.00 0.00 4.30
947 989 0.773700 ATAATCTCCCCAGCCCCAGG 60.774 60.000 0.00 0.00 0.00 4.45
980 1022 0.866427 GATCGATCTACCGCGAGACA 59.134 55.000 18.29 0.00 40.14 3.41
1068 1116 1.840741 CGTGCTTTCTACGACGATCTG 59.159 52.381 0.00 0.00 43.82 2.90
1070 1118 1.201343 GCTTTCTACGACGATCTGCC 58.799 55.000 0.00 0.00 0.00 4.85
1071 1119 1.841450 CTTTCTACGACGATCTGCCC 58.159 55.000 0.00 0.00 0.00 5.36
1072 1120 0.458669 TTTCTACGACGATCTGCCCC 59.541 55.000 0.00 0.00 0.00 5.80
1073 1121 1.389609 TTCTACGACGATCTGCCCCC 61.390 60.000 0.00 0.00 0.00 5.40
1074 1122 3.195591 CTACGACGATCTGCCCCCG 62.196 68.421 0.00 0.00 0.00 5.73
1077 1125 3.917760 GACGATCTGCCCCCGGAG 61.918 72.222 0.73 0.00 0.00 4.63
1078 1126 4.458829 ACGATCTGCCCCCGGAGA 62.459 66.667 0.73 0.00 0.00 3.71
1710 1770 2.749044 CAGCTGGAGCCGTTGCAT 60.749 61.111 5.57 0.00 43.38 3.96
1726 1786 1.444672 CATGCGCAGATCCAGAGGA 59.555 57.895 18.32 0.00 35.55 3.71
1791 1854 2.726241 GCAGAAAGAAAACAATGTCGCC 59.274 45.455 0.00 0.00 0.00 5.54
1931 2000 5.456763 GGATGGTAAAACTAGGCATGGATCT 60.457 44.000 0.00 0.00 0.00 2.75
2006 2078 7.969536 AAAAGATGAACTCGAATGAAGAAGA 57.030 32.000 0.00 0.00 0.00 2.87
2007 2079 7.969536 AAAGATGAACTCGAATGAAGAAGAA 57.030 32.000 0.00 0.00 0.00 2.52
2008 2080 6.959671 AGATGAACTCGAATGAAGAAGAAC 57.040 37.500 0.00 0.00 0.00 3.01
2028 2100 6.395629 AGAACAAGAAAAGCAGCGTATACTA 58.604 36.000 0.56 0.00 0.00 1.82
2092 2167 2.045045 AGCAGCTGGGCGCAAATA 60.045 55.556 17.12 0.00 42.61 1.40
2103 2178 2.414824 GGGCGCAAATATCAAACACGAA 60.415 45.455 10.83 0.00 0.00 3.85
2112 2187 6.533819 AATATCAAACACGAAGACGAACAA 57.466 33.333 0.00 0.00 42.66 2.83
2113 2188 3.918258 TCAAACACGAAGACGAACAAG 57.082 42.857 0.00 0.00 42.66 3.16
2122 2197 2.357517 ACGAACAAGAGCTGGGCG 60.358 61.111 0.00 0.00 33.50 6.13
2124 2199 3.793144 GAACAAGAGCTGGGCGCG 61.793 66.667 0.00 0.00 45.59 6.86
2162 2237 0.031178 GAACAACAGCTGGGCACAAG 59.969 55.000 19.93 1.89 0.00 3.16
2180 2255 2.649331 AGTATCAAACACGAGGACGG 57.351 50.000 0.00 0.00 44.46 4.79
2266 2344 6.385649 AAGATGGCGAAAACTAAAAGACAA 57.614 33.333 0.00 0.00 0.00 3.18
2267 2345 6.575162 AGATGGCGAAAACTAAAAGACAAT 57.425 33.333 0.00 0.00 0.00 2.71
2268 2346 7.681939 AGATGGCGAAAACTAAAAGACAATA 57.318 32.000 0.00 0.00 0.00 1.90
2312 2397 2.546368 TGCTATATTTTAACGCCGCCTG 59.454 45.455 0.00 0.00 0.00 4.85
2375 3930 4.039004 AGCACAATTGTTATGGCAGAAACA 59.961 37.500 17.77 12.62 33.92 2.83
2478 4958 6.405397 GCTGGTTTCTCTTCTTGGTTTTTACA 60.405 38.462 0.00 0.00 0.00 2.41
2573 5054 1.301244 GATCGGGTCATCGCATGCT 60.301 57.895 17.13 0.00 0.00 3.79
2596 5077 3.381949 AGTTTATTCGCTACCGATCAGC 58.618 45.455 0.00 0.00 43.97 4.26
2600 5081 4.301027 CGCTACCGATCAGCCCCC 62.301 72.222 0.00 0.00 35.53 5.40
2626 5114 1.281867 AGCTGGGATTTCACCGATCAA 59.718 47.619 0.00 0.00 0.00 2.57
2740 6543 0.669625 GACGTGGGTAGGTGCAAGTC 60.670 60.000 0.00 0.00 0.00 3.01
2834 6637 6.522233 CACAGATTAATAGCAGTGCACTAG 57.478 41.667 21.20 14.91 0.00 2.57
2873 6676 1.017387 CCGGCTAGCAAATCCAAGAC 58.983 55.000 18.24 0.00 0.00 3.01
2900 6703 1.153086 CACATCCACCCAGCCTAGC 60.153 63.158 0.00 0.00 0.00 3.42
3052 6875 1.962807 TGCCTGTTCCTCACAAATTGG 59.037 47.619 0.00 0.00 33.87 3.16
3103 6926 3.251509 TTCTGCTGCCCTGAGCCA 61.252 61.111 0.00 0.00 42.71 4.75
3111 6934 1.743252 GCCCTGAGCCAGAAAGACG 60.743 63.158 4.00 0.00 32.44 4.18
3144 6967 3.197790 CCGGCAGAAGCATGGACG 61.198 66.667 0.00 0.00 44.61 4.79
3157 6980 2.226330 CATGGACGGGTTGACTTTTGA 58.774 47.619 0.00 0.00 0.00 2.69
3158 6981 2.421751 TGGACGGGTTGACTTTTGAA 57.578 45.000 0.00 0.00 0.00 2.69
3205 7028 6.097915 TGGTAAAACACAAGAACAAAACCA 57.902 33.333 0.00 0.00 0.00 3.67
3285 7108 2.832129 TGCTTCTTACCTTCTGATCGGT 59.168 45.455 0.42 0.00 37.31 4.69
3333 7156 4.952335 AGCAGCAGTTATTTCTAAGGCAAT 59.048 37.500 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 108 4.615901 TGCAACCGTAGCAGGATG 57.384 55.556 0.00 0.00 37.02 3.51
226 231 0.467844 ATGGCACTGCACAACAAGGA 60.468 50.000 2.82 0.00 0.00 3.36
428 433 1.414866 GCATCCCCTTCCTCCTCCTC 61.415 65.000 0.00 0.00 0.00 3.71
455 461 2.626743 CACCCCCTACCTACAGTATTCG 59.373 54.545 0.00 0.00 0.00 3.34
531 537 2.070039 CGGTAGCCCAATCTCCCCA 61.070 63.158 0.00 0.00 0.00 4.96
546 552 2.569218 ATCGACCCTCTACCTGCGGT 62.569 60.000 5.58 5.58 40.16 5.68
676 684 3.069980 GACGAGACCTGCATCCGCT 62.070 63.158 0.00 0.00 39.64 5.52
692 700 1.442857 CTCGTGCTCCTGTGTCGAC 60.443 63.158 9.11 9.11 0.00 4.20
769 777 6.096695 ACATTGCAACGGAAAACATATAACC 58.903 36.000 0.00 0.00 0.00 2.85
773 781 5.328691 CGTACATTGCAACGGAAAACATAT 58.671 37.500 0.00 0.00 35.51 1.78
774 782 4.713806 CGTACATTGCAACGGAAAACATA 58.286 39.130 0.00 0.00 35.51 2.29
775 783 3.560503 CGTACATTGCAACGGAAAACAT 58.439 40.909 0.00 0.00 35.51 2.71
776 784 2.988343 CGTACATTGCAACGGAAAACA 58.012 42.857 0.00 0.00 35.51 2.83
783 791 2.097538 CGCCCGTACATTGCAACG 59.902 61.111 0.00 0.38 38.80 4.10
784 792 2.202427 GCGCCCGTACATTGCAAC 60.202 61.111 0.00 0.00 0.00 4.17
785 793 2.043405 ATGCGCCCGTACATTGCAA 61.043 52.632 4.18 0.00 39.26 4.08
786 794 2.437537 ATGCGCCCGTACATTGCA 60.438 55.556 4.18 0.00 40.23 4.08
787 795 2.024588 CATGCGCCCGTACATTGC 59.975 61.111 4.18 0.00 0.00 3.56
788 796 1.062365 CACATGCGCCCGTACATTG 59.938 57.895 4.18 0.00 0.00 2.82
789 797 2.760159 GCACATGCGCCCGTACATT 61.760 57.895 4.18 0.00 0.00 2.71
790 798 3.202001 GCACATGCGCCCGTACAT 61.202 61.111 4.18 0.00 0.00 2.29
816 824 6.127281 TGCTAGCACATGATCCAATGATTTTT 60.127 34.615 14.93 0.00 0.00 1.94
817 825 5.361571 TGCTAGCACATGATCCAATGATTTT 59.638 36.000 14.93 0.00 0.00 1.82
818 826 4.891168 TGCTAGCACATGATCCAATGATTT 59.109 37.500 14.93 0.00 0.00 2.17
819 827 4.466827 TGCTAGCACATGATCCAATGATT 58.533 39.130 14.93 0.00 0.00 2.57
820 828 4.072839 CTGCTAGCACATGATCCAATGAT 58.927 43.478 14.93 0.00 0.00 2.45
821 829 3.473625 CTGCTAGCACATGATCCAATGA 58.526 45.455 14.93 0.00 0.00 2.57
822 830 2.031069 GCTGCTAGCACATGATCCAATG 60.031 50.000 14.93 0.11 41.89 2.82
823 831 2.228059 GCTGCTAGCACATGATCCAAT 58.772 47.619 14.93 0.00 41.89 3.16
824 832 1.671979 GCTGCTAGCACATGATCCAA 58.328 50.000 14.93 0.00 41.89 3.53
825 833 0.179037 GGCTGCTAGCACATGATCCA 60.179 55.000 14.93 0.00 44.75 3.41
826 834 1.226686 CGGCTGCTAGCACATGATCC 61.227 60.000 14.93 7.24 44.75 3.36
827 835 1.226686 CCGGCTGCTAGCACATGATC 61.227 60.000 14.93 0.17 44.75 2.92
828 836 1.227764 CCGGCTGCTAGCACATGAT 60.228 57.895 14.93 0.00 44.75 2.45
829 837 2.184020 AACCGGCTGCTAGCACATGA 62.184 55.000 14.93 0.00 44.75 3.07
830 838 1.308069 AAACCGGCTGCTAGCACATG 61.308 55.000 14.93 5.61 44.75 3.21
831 839 1.002134 AAACCGGCTGCTAGCACAT 60.002 52.632 14.93 0.00 44.75 3.21
832 840 1.965930 CAAACCGGCTGCTAGCACA 60.966 57.895 14.93 0.00 44.75 4.57
833 841 2.870372 CAAACCGGCTGCTAGCAC 59.130 61.111 14.93 10.89 44.75 4.40
834 842 3.055719 GCAAACCGGCTGCTAGCA 61.056 61.111 18.22 18.22 44.75 3.49
920 962 4.336280 GGCTGGGGAGATTATTTATGGAC 58.664 47.826 0.00 0.00 0.00 4.02
923 965 3.075882 TGGGGCTGGGGAGATTATTTATG 59.924 47.826 0.00 0.00 0.00 1.90
947 989 6.020041 GGTAGATCGATCGTTTTAGGTGAAAC 60.020 42.308 19.33 3.85 36.43 2.78
1314 1374 2.928036 TCACCCTCTCCTTCTCATCA 57.072 50.000 0.00 0.00 0.00 3.07
1317 1377 1.203237 AGCTTCACCCTCTCCTTCTCA 60.203 52.381 0.00 0.00 0.00 3.27
1710 1770 1.444672 CATCCTCTGGATCTGCGCA 59.555 57.895 10.98 10.98 40.98 6.09
1801 1864 4.147449 TCGGCGACATGGAGCTGG 62.147 66.667 19.06 10.30 40.00 4.85
1931 2000 1.228124 CTTGCTTTCCCACCGGTCA 60.228 57.895 2.59 0.00 0.00 4.02
1980 2052 8.285394 TCTTCTTCATTCGAGTTCATCTTTTTG 58.715 33.333 0.00 0.00 0.00 2.44
2006 2078 6.395629 TCTAGTATACGCTGCTTTTCTTGTT 58.604 36.000 0.00 0.00 0.00 2.83
2007 2079 5.962433 TCTAGTATACGCTGCTTTTCTTGT 58.038 37.500 0.00 0.00 0.00 3.16
2008 2080 6.310467 TGTTCTAGTATACGCTGCTTTTCTTG 59.690 38.462 0.00 0.00 0.00 3.02
2028 2100 1.679032 GCCTTGGCGTATTCCTGTTCT 60.679 52.381 0.00 0.00 0.00 3.01
2088 2163 6.533819 TGTTCGTCTTCGTGTTTGATATTT 57.466 33.333 0.00 0.00 38.33 1.40
2092 2167 4.116961 TCTTGTTCGTCTTCGTGTTTGAT 58.883 39.130 0.00 0.00 38.33 2.57
2103 2178 1.004440 GCCCAGCTCTTGTTCGTCT 60.004 57.895 0.00 0.00 0.00 4.18
2112 2187 1.005630 GATATTCGCGCCCAGCTCT 60.006 57.895 0.00 0.00 45.59 4.09
2113 2188 0.880278 TTGATATTCGCGCCCAGCTC 60.880 55.000 0.00 0.00 45.59 4.09
2122 2197 2.034842 CGTCCTCGTGTTTGATATTCGC 60.035 50.000 0.00 0.00 0.00 4.70
2124 2199 4.624024 TGTTCGTCCTCGTGTTTGATATTC 59.376 41.667 0.00 0.00 38.33 1.75
2162 2237 1.990563 CACCGTCCTCGTGTTTGATAC 59.009 52.381 0.00 0.00 35.01 2.24
2180 2255 2.678324 CTTCTTCCTCCACGTCTTCAC 58.322 52.381 0.00 0.00 0.00 3.18
2266 2344 6.594788 ATTTGTTCTTCATGTTGCCACTAT 57.405 33.333 0.00 0.00 0.00 2.12
2267 2345 6.403866 AATTTGTTCTTCATGTTGCCACTA 57.596 33.333 0.00 0.00 0.00 2.74
2268 2346 4.942761 ATTTGTTCTTCATGTTGCCACT 57.057 36.364 0.00 0.00 0.00 4.00
2281 2359 9.083080 GGCGTTAAAATATAGCAAATTTGTTCT 57.917 29.630 19.03 11.10 0.00 3.01
2333 2418 7.298507 TGTGCTAGTTTAATAATGTTCGACC 57.701 36.000 0.00 0.00 0.00 4.79
2375 3930 6.313905 CGCTCATAGGTAAGTGTTTTTCTCAT 59.686 38.462 0.00 0.00 0.00 2.90
2573 5054 4.980434 GCTGATCGGTAGCGAATAAACTTA 59.020 41.667 22.11 0.00 0.00 2.24
2635 5123 7.822658 ACACACTGTGTCTTAAAAGCTAAAAA 58.177 30.769 11.12 0.00 43.92 1.94
2653 5145 6.073327 TGTGTAGAGAAGTTAGACACACTG 57.927 41.667 2.19 0.00 43.97 3.66
2683 5175 1.893801 GCTCTACATAGGTACGGGCAT 59.106 52.381 4.63 0.00 29.78 4.40
2684 5176 1.325355 GCTCTACATAGGTACGGGCA 58.675 55.000 4.63 0.00 29.78 5.36
2720 5220 1.369692 CTTGCACCTACCCACGTCA 59.630 57.895 0.00 0.00 0.00 4.35
2721 5221 0.669625 GACTTGCACCTACCCACGTC 60.670 60.000 0.00 0.00 0.00 4.34
2723 5223 0.034896 AAGACTTGCACCTACCCACG 59.965 55.000 0.00 0.00 0.00 4.94
2802 6605 7.821359 CACTGCTATTAATCTGTGCACCTATAT 59.179 37.037 15.69 3.16 0.00 0.86
2834 6637 1.855360 GTAGAAGTGCTATGTCGCTGC 59.145 52.381 0.00 0.00 0.00 5.25
2873 6676 2.167281 CTGGGTGGATGTGTGAGAGTAG 59.833 54.545 0.00 0.00 0.00 2.57
2900 6703 4.035675 GGAAATTGCTGGATCGGAAGTAAG 59.964 45.833 0.00 0.00 0.00 2.34
3103 6926 1.442148 GGGATAGCGGCGTCTTTCT 59.558 57.895 9.37 0.00 0.00 2.52
3135 6958 0.110486 AAAGTCAACCCGTCCATGCT 59.890 50.000 0.00 0.00 0.00 3.79
3144 6967 4.678622 ACGATTTGTTCAAAAGTCAACCC 58.321 39.130 2.11 0.00 0.00 4.11
3157 6980 1.877443 CCCTTTGGTCGACGATTTGTT 59.123 47.619 9.92 0.00 0.00 2.83
3158 6981 1.071071 TCCCTTTGGTCGACGATTTGT 59.929 47.619 9.92 0.00 0.00 2.83
3205 7028 3.123621 CGCTCTGTCTTTATTTGCTTCGT 59.876 43.478 0.00 0.00 0.00 3.85
3285 7108 3.631686 CGGTGATGGAATTCCTAATGCAA 59.368 43.478 24.73 3.39 36.82 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.