Multiple sequence alignment - TraesCS7B01G059300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G059300 chr7B 100.000 4518 0 0 1 4518 61912151 61907634 0.000000e+00 8344
1 TraesCS7B01G059300 chr7B 88.253 664 55 15 3863 4518 608199520 608198872 0.000000e+00 773
2 TraesCS7B01G059300 chr7A 95.720 3341 87 15 530 3826 108239150 108235822 0.000000e+00 5326
3 TraesCS7B01G059300 chr7D 97.734 2869 53 5 966 3826 104092871 104090007 0.000000e+00 4927
4 TraesCS7B01G059300 chr7D 93.034 445 14 8 530 965 104093336 104092900 6.380000e-178 634
5 TraesCS7B01G059300 chr6B 85.370 1244 141 20 2008 3250 654734424 654733221 0.000000e+00 1251
6 TraesCS7B01G059300 chr6B 86.325 702 56 10 3838 4518 447409168 447409850 0.000000e+00 728
7 TraesCS7B01G059300 chr6B 83.299 485 79 2 1047 1530 654735542 654735059 3.210000e-121 446
8 TraesCS7B01G059300 chr6B 86.245 269 25 8 3841 4105 20481959 20482219 9.570000e-72 281
9 TraesCS7B01G059300 chr6A 85.152 1246 143 21 2008 3250 579438872 579437666 0.000000e+00 1238
10 TraesCS7B01G059300 chr6A 83.402 488 73 5 1047 1530 579439989 579439506 3.210000e-121 446
11 TraesCS7B01G059300 chr6D 85.048 1244 145 16 2008 3250 433477556 433476353 0.000000e+00 1229
12 TraesCS7B01G059300 chr6D 87.435 573 39 20 3922 4486 465949474 465950021 2.970000e-176 628
13 TraesCS7B01G059300 chr6D 82.863 496 81 4 1047 1540 433478690 433478197 4.150000e-120 442
14 TraesCS7B01G059300 chr2B 89.270 699 48 10 3840 4518 608478703 608479394 0.000000e+00 850
15 TraesCS7B01G059300 chr2B 87.714 700 54 13 3839 4518 532004763 532004076 0.000000e+00 787
16 TraesCS7B01G059300 chr3B 89.072 668 54 11 3840 4501 191156192 191155538 0.000000e+00 811
17 TraesCS7B01G059300 chr3B 87.153 685 57 10 3837 4518 47850392 47851048 0.000000e+00 749
18 TraesCS7B01G059300 chr3B 86.861 685 59 10 3837 4518 47796375 47797031 0.000000e+00 737
19 TraesCS7B01G059300 chr3B 86.861 685 59 10 3837 4518 48128105 48128761 0.000000e+00 737
20 TraesCS7B01G059300 chr3B 86.715 685 60 10 3837 4518 48066108 48066764 0.000000e+00 732
21 TraesCS7B01G059300 chr3B 86.423 685 62 10 3837 4518 47728651 47729307 0.000000e+00 721
22 TraesCS7B01G059300 chr3B 77.138 1216 243 28 2011 3213 377424465 377425658 0.000000e+00 673
23 TraesCS7B01G059300 chr3B 88.087 554 44 11 3972 4518 738701873 738701335 4.930000e-179 638
24 TraesCS7B01G059300 chr4B 86.878 663 64 15 3863 4518 672309564 672310210 0.000000e+00 721
25 TraesCS7B01G059300 chr3D 77.138 1216 243 30 2011 3213 283316235 283317428 0.000000e+00 673
26 TraesCS7B01G059300 chr3A 77.037 1215 246 28 2011 3213 370239445 370240638 0.000000e+00 667
27 TraesCS7B01G059300 chr1B 84.502 271 33 6 3839 4106 639091467 639091731 4.480000e-65 259


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G059300 chr7B 61907634 61912151 4517 True 8344.0 8344 100.0000 1 4518 1 chr7B.!!$R1 4517
1 TraesCS7B01G059300 chr7B 608198872 608199520 648 True 773.0 773 88.2530 3863 4518 1 chr7B.!!$R2 655
2 TraesCS7B01G059300 chr7A 108235822 108239150 3328 True 5326.0 5326 95.7200 530 3826 1 chr7A.!!$R1 3296
3 TraesCS7B01G059300 chr7D 104090007 104093336 3329 True 2780.5 4927 95.3840 530 3826 2 chr7D.!!$R1 3296
4 TraesCS7B01G059300 chr6B 654733221 654735542 2321 True 848.5 1251 84.3345 1047 3250 2 chr6B.!!$R1 2203
5 TraesCS7B01G059300 chr6B 447409168 447409850 682 False 728.0 728 86.3250 3838 4518 1 chr6B.!!$F2 680
6 TraesCS7B01G059300 chr6A 579437666 579439989 2323 True 842.0 1238 84.2770 1047 3250 2 chr6A.!!$R1 2203
7 TraesCS7B01G059300 chr6D 433476353 433478690 2337 True 835.5 1229 83.9555 1047 3250 2 chr6D.!!$R1 2203
8 TraesCS7B01G059300 chr6D 465949474 465950021 547 False 628.0 628 87.4350 3922 4486 1 chr6D.!!$F1 564
9 TraesCS7B01G059300 chr2B 608478703 608479394 691 False 850.0 850 89.2700 3840 4518 1 chr2B.!!$F1 678
10 TraesCS7B01G059300 chr2B 532004076 532004763 687 True 787.0 787 87.7140 3839 4518 1 chr2B.!!$R1 679
11 TraesCS7B01G059300 chr3B 191155538 191156192 654 True 811.0 811 89.0720 3840 4501 1 chr3B.!!$R1 661
12 TraesCS7B01G059300 chr3B 47850392 47851048 656 False 749.0 749 87.1530 3837 4518 1 chr3B.!!$F3 681
13 TraesCS7B01G059300 chr3B 47796375 47797031 656 False 737.0 737 86.8610 3837 4518 1 chr3B.!!$F2 681
14 TraesCS7B01G059300 chr3B 48128105 48128761 656 False 737.0 737 86.8610 3837 4518 1 chr3B.!!$F5 681
15 TraesCS7B01G059300 chr3B 48066108 48066764 656 False 732.0 732 86.7150 3837 4518 1 chr3B.!!$F4 681
16 TraesCS7B01G059300 chr3B 47728651 47729307 656 False 721.0 721 86.4230 3837 4518 1 chr3B.!!$F1 681
17 TraesCS7B01G059300 chr3B 377424465 377425658 1193 False 673.0 673 77.1380 2011 3213 1 chr3B.!!$F6 1202
18 TraesCS7B01G059300 chr3B 738701335 738701873 538 True 638.0 638 88.0870 3972 4518 1 chr3B.!!$R2 546
19 TraesCS7B01G059300 chr4B 672309564 672310210 646 False 721.0 721 86.8780 3863 4518 1 chr4B.!!$F1 655
20 TraesCS7B01G059300 chr3D 283316235 283317428 1193 False 673.0 673 77.1380 2011 3213 1 chr3D.!!$F1 1202
21 TraesCS7B01G059300 chr3A 370239445 370240638 1193 False 667.0 667 77.0370 2011 3213 1 chr3A.!!$F1 1202

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.033109 TCCTCTGATTCCCGCTCTCA 60.033 55.000 0.00 0.00 0.00 3.27 F
326 327 0.040646 TAGAAGAGGTTGCTCCCCGA 59.959 55.000 0.00 0.00 36.75 5.14 F
393 394 0.103208 GCACAGAGAGATACGGTGGG 59.897 60.000 0.00 0.00 0.00 4.61 F
905 915 0.321564 CCTGTCGATGGGCAAACTGA 60.322 55.000 0.00 0.00 0.00 3.41 F
2844 3164 1.136774 CAAGATCAGCGACGTCGGA 59.863 57.895 36.13 26.38 40.23 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2177 1.892819 CGCTGGAGCAGAAGGAGGAA 61.893 60.000 0.00 0.00 42.21 3.36 R
2187 2483 1.160329 TCTCGCGCTCGATCATCTGA 61.160 55.000 5.56 0.00 44.56 3.27 R
2457 2777 2.221299 GGTGTGGTCCAGGTAGCCA 61.221 63.158 0.00 0.00 0.00 4.75 R
2934 3254 1.682684 CCCCGTCTGCTGGTACTCT 60.683 63.158 0.00 0.00 0.00 3.24 R
3937 4272 0.098025 GCATTTTAGCGCGGTTGCTA 59.902 50.000 19.09 0.51 45.14 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.009681 GAGATCCTTCCCTCTCCTCC 57.990 60.000 0.00 0.00 33.30 4.30
20 21 1.219213 GAGATCCTTCCCTCTCCTCCA 59.781 57.143 0.00 0.00 33.30 3.86
21 22 1.872367 AGATCCTTCCCTCTCCTCCAT 59.128 52.381 0.00 0.00 0.00 3.41
22 23 2.158173 AGATCCTTCCCTCTCCTCCATC 60.158 54.545 0.00 0.00 0.00 3.51
23 24 0.105964 TCCTTCCCTCTCCTCCATCG 60.106 60.000 0.00 0.00 0.00 3.84
24 25 1.745264 CTTCCCTCTCCTCCATCGC 59.255 63.158 0.00 0.00 0.00 4.58
25 26 2.081425 CTTCCCTCTCCTCCATCGCG 62.081 65.000 0.00 0.00 0.00 5.87
26 27 4.292178 CCCTCTCCTCCATCGCGC 62.292 72.222 0.00 0.00 0.00 6.86
27 28 4.292178 CCTCTCCTCCATCGCGCC 62.292 72.222 0.00 0.00 0.00 6.53
28 29 3.222855 CTCTCCTCCATCGCGCCT 61.223 66.667 0.00 0.00 0.00 5.52
29 30 3.496875 CTCTCCTCCATCGCGCCTG 62.497 68.421 0.00 0.56 0.00 4.85
35 36 4.845580 CCATCGCGCCTGCCTCTT 62.846 66.667 0.00 0.00 38.08 2.85
36 37 3.570638 CATCGCGCCTGCCTCTTG 61.571 66.667 0.00 0.00 38.08 3.02
37 38 3.774528 ATCGCGCCTGCCTCTTGA 61.775 61.111 0.00 0.00 38.08 3.02
38 39 3.729965 ATCGCGCCTGCCTCTTGAG 62.730 63.158 0.00 0.00 38.08 3.02
41 42 4.399395 CGCCTGCCTCTTGAGCCA 62.399 66.667 0.00 0.00 0.00 4.75
42 43 2.438075 GCCTGCCTCTTGAGCCAG 60.438 66.667 2.06 2.06 0.00 4.85
43 44 2.438075 CCTGCCTCTTGAGCCAGC 60.438 66.667 3.40 0.00 0.00 4.85
44 45 2.818714 CTGCCTCTTGAGCCAGCG 60.819 66.667 0.00 0.00 0.00 5.18
45 46 3.602513 CTGCCTCTTGAGCCAGCGT 62.603 63.158 0.00 0.00 0.00 5.07
46 47 2.359230 GCCTCTTGAGCCAGCGTT 60.359 61.111 0.00 0.00 0.00 4.84
47 48 2.684843 GCCTCTTGAGCCAGCGTTG 61.685 63.158 0.00 0.00 0.00 4.10
48 49 1.302033 CCTCTTGAGCCAGCGTTGT 60.302 57.895 0.00 0.00 0.00 3.32
49 50 1.294659 CCTCTTGAGCCAGCGTTGTC 61.295 60.000 0.00 0.00 0.00 3.18
50 51 1.294659 CTCTTGAGCCAGCGTTGTCC 61.295 60.000 0.00 0.00 0.00 4.02
51 52 1.302033 CTTGAGCCAGCGTTGTCCT 60.302 57.895 0.00 0.00 0.00 3.85
52 53 0.886490 CTTGAGCCAGCGTTGTCCTT 60.886 55.000 0.00 0.00 0.00 3.36
53 54 0.884704 TTGAGCCAGCGTTGTCCTTC 60.885 55.000 0.00 0.00 0.00 3.46
54 55 2.357517 AGCCAGCGTTGTCCTTCG 60.358 61.111 0.00 0.00 0.00 3.79
55 56 3.423154 GCCAGCGTTGTCCTTCGG 61.423 66.667 0.00 0.00 0.00 4.30
56 57 3.423154 CCAGCGTTGTCCTTCGGC 61.423 66.667 0.00 0.00 0.00 5.54
57 58 2.357517 CAGCGTTGTCCTTCGGCT 60.358 61.111 0.00 0.00 0.00 5.52
58 59 2.048127 AGCGTTGTCCTTCGGCTC 60.048 61.111 0.00 0.00 0.00 4.70
59 60 3.479269 GCGTTGTCCTTCGGCTCG 61.479 66.667 0.00 0.00 0.00 5.03
60 61 2.809601 CGTTGTCCTTCGGCTCGG 60.810 66.667 0.00 0.00 0.00 4.63
61 62 3.119096 GTTGTCCTTCGGCTCGGC 61.119 66.667 0.00 0.00 0.00 5.54
62 63 4.388499 TTGTCCTTCGGCTCGGCC 62.388 66.667 4.96 4.96 46.75 6.13
78 79 3.276109 CCATGCATGGTGTCGCAA 58.724 55.556 33.68 0.00 42.37 4.85
79 80 1.153978 CCATGCATGGTGTCGCAAC 60.154 57.895 33.68 0.00 42.37 4.17
80 81 1.580437 CATGCATGGTGTCGCAACA 59.420 52.632 19.40 0.15 42.37 3.33
81 82 0.039346 CATGCATGGTGTCGCAACAA 60.039 50.000 19.40 0.00 42.37 2.83
82 83 0.241749 ATGCATGGTGTCGCAACAAG 59.758 50.000 0.00 0.00 42.37 3.16
83 84 1.730547 GCATGGTGTCGCAACAAGC 60.731 57.895 8.79 8.79 38.53 4.01
84 85 1.951510 CATGGTGTCGCAACAAGCT 59.048 52.632 1.79 0.00 42.61 3.74
85 86 0.110056 CATGGTGTCGCAACAAGCTC 60.110 55.000 1.79 0.00 42.61 4.09
86 87 1.237285 ATGGTGTCGCAACAAGCTCC 61.237 55.000 1.79 0.00 42.61 4.70
87 88 2.617274 GGTGTCGCAACAAGCTCCC 61.617 63.158 0.00 0.00 42.61 4.30
88 89 1.891919 GTGTCGCAACAAGCTCCCA 60.892 57.895 0.00 0.00 42.61 4.37
89 90 1.153066 TGTCGCAACAAGCTCCCAA 60.153 52.632 0.00 0.00 42.61 4.12
90 91 0.749818 TGTCGCAACAAGCTCCCAAA 60.750 50.000 0.00 0.00 42.61 3.28
91 92 0.040067 GTCGCAACAAGCTCCCAAAG 60.040 55.000 0.00 0.00 42.61 2.77
99 100 3.830192 GCTCCCAAAGCCATGGCG 61.830 66.667 30.50 16.74 45.92 5.69
109 110 2.969238 CCATGGCGTCGCTGGATC 60.969 66.667 18.14 1.68 31.38 3.36
110 111 2.969238 CATGGCGTCGCTGGATCC 60.969 66.667 18.11 4.20 0.00 3.36
111 112 4.241555 ATGGCGTCGCTGGATCCC 62.242 66.667 18.11 0.00 0.00 3.85
113 114 4.467084 GGCGTCGCTGGATCCCAA 62.467 66.667 18.11 0.00 30.80 4.12
114 115 3.195698 GCGTCGCTGGATCCCAAC 61.196 66.667 10.68 1.10 30.80 3.77
115 116 2.264480 CGTCGCTGGATCCCAACA 59.736 61.111 9.90 0.00 30.80 3.33
116 117 2.100631 CGTCGCTGGATCCCAACAC 61.101 63.158 9.90 0.00 30.80 3.32
117 118 1.003839 GTCGCTGGATCCCAACACA 60.004 57.895 9.90 0.00 30.80 3.72
118 119 0.605319 GTCGCTGGATCCCAACACAA 60.605 55.000 9.90 0.00 30.80 3.33
119 120 0.605319 TCGCTGGATCCCAACACAAC 60.605 55.000 9.90 0.00 30.80 3.32
120 121 0.606401 CGCTGGATCCCAACACAACT 60.606 55.000 9.90 0.00 30.80 3.16
121 122 0.883833 GCTGGATCCCAACACAACTG 59.116 55.000 9.90 0.00 30.80 3.16
122 123 0.883833 CTGGATCCCAACACAACTGC 59.116 55.000 9.90 0.00 30.80 4.40
123 124 0.888736 TGGATCCCAACACAACTGCG 60.889 55.000 9.90 0.00 0.00 5.18
124 125 1.210155 GATCCCAACACAACTGCGC 59.790 57.895 0.00 0.00 0.00 6.09
125 126 2.200170 GATCCCAACACAACTGCGCC 62.200 60.000 4.18 0.00 0.00 6.53
126 127 2.697147 ATCCCAACACAACTGCGCCT 62.697 55.000 4.18 0.00 0.00 5.52
127 128 2.639286 CCAACACAACTGCGCCTC 59.361 61.111 4.18 0.00 0.00 4.70
128 129 2.186160 CCAACACAACTGCGCCTCA 61.186 57.895 4.18 0.00 0.00 3.86
129 130 1.518056 CCAACACAACTGCGCCTCAT 61.518 55.000 4.18 0.00 0.00 2.90
130 131 0.110056 CAACACAACTGCGCCTCATC 60.110 55.000 4.18 0.00 0.00 2.92
131 132 1.237285 AACACAACTGCGCCTCATCC 61.237 55.000 4.18 0.00 0.00 3.51
132 133 1.672030 CACAACTGCGCCTCATCCA 60.672 57.895 4.18 0.00 0.00 3.41
133 134 1.672356 ACAACTGCGCCTCATCCAC 60.672 57.895 4.18 0.00 0.00 4.02
134 135 2.045926 AACTGCGCCTCATCCACC 60.046 61.111 4.18 0.00 0.00 4.61
135 136 2.596851 AACTGCGCCTCATCCACCT 61.597 57.895 4.18 0.00 0.00 4.00
136 137 2.202987 CTGCGCCTCATCCACCTC 60.203 66.667 4.18 0.00 0.00 3.85
137 138 4.147449 TGCGCCTCATCCACCTCG 62.147 66.667 4.18 0.00 0.00 4.63
139 140 4.899239 CGCCTCATCCACCTCGCC 62.899 72.222 0.00 0.00 0.00 5.54
140 141 4.899239 GCCTCATCCACCTCGCCG 62.899 72.222 0.00 0.00 0.00 6.46
141 142 4.227134 CCTCATCCACCTCGCCGG 62.227 72.222 0.00 0.00 39.35 6.13
142 143 4.899239 CTCATCCACCTCGCCGGC 62.899 72.222 19.07 19.07 35.61 6.13
157 158 3.471806 GGCCCTCCCCTCGACTTC 61.472 72.222 0.00 0.00 0.00 3.01
158 159 2.364448 GCCCTCCCCTCGACTTCT 60.364 66.667 0.00 0.00 0.00 2.85
159 160 2.428085 GCCCTCCCCTCGACTTCTC 61.428 68.421 0.00 0.00 0.00 2.87
160 161 1.758906 CCCTCCCCTCGACTTCTCC 60.759 68.421 0.00 0.00 0.00 3.71
161 162 1.308326 CCTCCCCTCGACTTCTCCT 59.692 63.158 0.00 0.00 0.00 3.69
162 163 0.753848 CCTCCCCTCGACTTCTCCTC 60.754 65.000 0.00 0.00 0.00 3.71
163 164 0.257616 CTCCCCTCGACTTCTCCTCT 59.742 60.000 0.00 0.00 0.00 3.69
164 165 0.033991 TCCCCTCGACTTCTCCTCTG 60.034 60.000 0.00 0.00 0.00 3.35
165 166 0.033991 CCCCTCGACTTCTCCTCTGA 60.034 60.000 0.00 0.00 0.00 3.27
166 167 1.410932 CCCCTCGACTTCTCCTCTGAT 60.411 57.143 0.00 0.00 0.00 2.90
167 168 2.383855 CCCTCGACTTCTCCTCTGATT 58.616 52.381 0.00 0.00 0.00 2.57
168 169 2.360801 CCCTCGACTTCTCCTCTGATTC 59.639 54.545 0.00 0.00 0.00 2.52
169 170 2.360801 CCTCGACTTCTCCTCTGATTCC 59.639 54.545 0.00 0.00 0.00 3.01
170 171 2.360801 CTCGACTTCTCCTCTGATTCCC 59.639 54.545 0.00 0.00 0.00 3.97
171 172 1.066303 CGACTTCTCCTCTGATTCCCG 59.934 57.143 0.00 0.00 0.00 5.14
172 173 0.827368 ACTTCTCCTCTGATTCCCGC 59.173 55.000 0.00 0.00 0.00 6.13
173 174 1.118838 CTTCTCCTCTGATTCCCGCT 58.881 55.000 0.00 0.00 0.00 5.52
174 175 1.068434 CTTCTCCTCTGATTCCCGCTC 59.932 57.143 0.00 0.00 0.00 5.03
175 176 0.260230 TCTCCTCTGATTCCCGCTCT 59.740 55.000 0.00 0.00 0.00 4.09
176 177 0.673437 CTCCTCTGATTCCCGCTCTC 59.327 60.000 0.00 0.00 0.00 3.20
177 178 0.033109 TCCTCTGATTCCCGCTCTCA 60.033 55.000 0.00 0.00 0.00 3.27
178 179 0.826715 CCTCTGATTCCCGCTCTCAA 59.173 55.000 0.00 0.00 0.00 3.02
179 180 1.208052 CCTCTGATTCCCGCTCTCAAA 59.792 52.381 0.00 0.00 0.00 2.69
180 181 2.548875 CTCTGATTCCCGCTCTCAAAG 58.451 52.381 0.00 0.00 0.00 2.77
181 182 1.208052 TCTGATTCCCGCTCTCAAAGG 59.792 52.381 0.00 0.00 0.00 3.11
182 183 1.208052 CTGATTCCCGCTCTCAAAGGA 59.792 52.381 0.00 0.00 0.00 3.36
183 184 1.839994 TGATTCCCGCTCTCAAAGGAT 59.160 47.619 0.00 0.00 0.00 3.24
184 185 2.158900 TGATTCCCGCTCTCAAAGGATC 60.159 50.000 0.00 0.00 0.00 3.36
185 186 1.573108 TTCCCGCTCTCAAAGGATCT 58.427 50.000 0.00 0.00 0.00 2.75
186 187 2.454336 TCCCGCTCTCAAAGGATCTA 57.546 50.000 0.00 0.00 0.00 1.98
187 188 2.311463 TCCCGCTCTCAAAGGATCTAG 58.689 52.381 0.00 0.00 0.00 2.43
188 189 2.091830 TCCCGCTCTCAAAGGATCTAGA 60.092 50.000 0.00 0.00 0.00 2.43
189 190 2.035321 CCCGCTCTCAAAGGATCTAGAC 59.965 54.545 0.00 0.00 0.00 2.59
190 191 2.287308 CCGCTCTCAAAGGATCTAGACG 60.287 54.545 0.00 0.00 0.00 4.18
191 192 2.356382 CGCTCTCAAAGGATCTAGACGT 59.644 50.000 0.00 0.00 0.00 4.34
192 193 3.547214 CGCTCTCAAAGGATCTAGACGTC 60.547 52.174 7.70 7.70 0.00 4.34
193 194 3.547214 GCTCTCAAAGGATCTAGACGTCG 60.547 52.174 10.46 0.00 0.00 5.12
194 195 2.355132 TCTCAAAGGATCTAGACGTCGC 59.645 50.000 10.46 0.00 0.00 5.19
195 196 2.356382 CTCAAAGGATCTAGACGTCGCT 59.644 50.000 10.46 0.00 0.00 4.93
196 197 2.097629 TCAAAGGATCTAGACGTCGCTG 59.902 50.000 10.46 4.57 0.00 5.18
197 198 0.382515 AAGGATCTAGACGTCGCTGC 59.617 55.000 10.46 1.67 0.00 5.25
198 199 1.008309 GGATCTAGACGTCGCTGCC 60.008 63.158 10.46 5.87 0.00 4.85
199 200 1.008309 GATCTAGACGTCGCTGCCC 60.008 63.158 10.46 0.00 0.00 5.36
200 201 1.448922 GATCTAGACGTCGCTGCCCT 61.449 60.000 10.46 0.00 0.00 5.19
201 202 0.179026 ATCTAGACGTCGCTGCCCTA 60.179 55.000 10.46 0.00 0.00 3.53
202 203 1.094073 TCTAGACGTCGCTGCCCTAC 61.094 60.000 10.46 0.00 0.00 3.18
203 204 2.061182 CTAGACGTCGCTGCCCTACC 62.061 65.000 10.46 0.00 0.00 3.18
204 205 4.509737 GACGTCGCTGCCCTACCC 62.510 72.222 0.00 0.00 0.00 3.69
206 207 4.208686 CGTCGCTGCCCTACCCTC 62.209 72.222 0.00 0.00 0.00 4.30
207 208 4.208686 GTCGCTGCCCTACCCTCG 62.209 72.222 0.00 0.00 0.00 4.63
214 215 4.798682 CCCTACCCTCGCCCAGGT 62.799 72.222 0.00 0.00 41.51 4.00
215 216 3.155167 CCTACCCTCGCCCAGGTC 61.155 72.222 0.00 0.00 41.51 3.85
216 217 3.528370 CTACCCTCGCCCAGGTCG 61.528 72.222 0.00 0.00 41.51 4.79
217 218 4.371417 TACCCTCGCCCAGGTCGT 62.371 66.667 0.00 0.00 41.51 4.34
218 219 3.892104 TACCCTCGCCCAGGTCGTT 62.892 63.158 0.00 0.00 41.51 3.85
219 220 4.452733 CCCTCGCCCAGGTCGTTC 62.453 72.222 0.00 0.00 41.51 3.95
220 221 4.796231 CCTCGCCCAGGTCGTTCG 62.796 72.222 0.00 0.00 37.53 3.95
221 222 4.052229 CTCGCCCAGGTCGTTCGT 62.052 66.667 0.00 0.00 0.00 3.85
222 223 3.569049 CTCGCCCAGGTCGTTCGTT 62.569 63.158 0.00 0.00 0.00 3.85
223 224 3.411351 CGCCCAGGTCGTTCGTTG 61.411 66.667 0.00 0.00 0.00 4.10
224 225 3.723348 GCCCAGGTCGTTCGTTGC 61.723 66.667 0.00 0.00 0.00 4.17
225 226 3.411351 CCCAGGTCGTTCGTTGCG 61.411 66.667 0.00 0.00 0.00 4.85
226 227 3.411351 CCAGGTCGTTCGTTGCGG 61.411 66.667 0.00 0.00 0.00 5.69
227 228 4.072088 CAGGTCGTTCGTTGCGGC 62.072 66.667 0.00 0.00 0.00 6.53
230 231 3.343421 GTCGTTCGTTGCGGCCTT 61.343 61.111 0.00 0.00 0.00 4.35
231 232 3.039588 TCGTTCGTTGCGGCCTTC 61.040 61.111 0.00 0.00 0.00 3.46
232 233 4.084888 CGTTCGTTGCGGCCTTCC 62.085 66.667 0.00 0.00 0.00 3.46
233 234 3.733960 GTTCGTTGCGGCCTTCCC 61.734 66.667 0.00 0.00 0.00 3.97
234 235 3.948719 TTCGTTGCGGCCTTCCCT 61.949 61.111 0.00 0.00 0.00 4.20
235 236 3.485346 TTCGTTGCGGCCTTCCCTT 62.485 57.895 0.00 0.00 0.00 3.95
236 237 2.969300 TTCGTTGCGGCCTTCCCTTT 62.969 55.000 0.00 0.00 0.00 3.11
237 238 2.650778 GTTGCGGCCTTCCCTTTG 59.349 61.111 0.00 0.00 0.00 2.77
238 239 1.901464 GTTGCGGCCTTCCCTTTGA 60.901 57.895 0.00 0.00 0.00 2.69
239 240 1.901464 TTGCGGCCTTCCCTTTGAC 60.901 57.895 0.00 0.00 0.00 3.18
240 241 3.431725 GCGGCCTTCCCTTTGACG 61.432 66.667 0.00 0.00 0.00 4.35
241 242 2.746277 CGGCCTTCCCTTTGACGG 60.746 66.667 0.00 0.00 35.49 4.79
242 243 2.434774 GGCCTTCCCTTTGACGGT 59.565 61.111 0.00 0.00 34.86 4.83
243 244 1.674651 GGCCTTCCCTTTGACGGTC 60.675 63.158 0.00 0.00 34.86 4.79
244 245 1.375326 GCCTTCCCTTTGACGGTCT 59.625 57.895 9.88 0.00 34.86 3.85
245 246 0.955919 GCCTTCCCTTTGACGGTCTG 60.956 60.000 9.88 0.05 34.86 3.51
246 247 0.396811 CCTTCCCTTTGACGGTCTGT 59.603 55.000 9.88 0.00 0.00 3.41
247 248 1.621814 CCTTCCCTTTGACGGTCTGTA 59.378 52.381 9.88 0.00 0.00 2.74
248 249 2.038033 CCTTCCCTTTGACGGTCTGTAA 59.962 50.000 9.88 0.87 0.00 2.41
249 250 3.495453 CCTTCCCTTTGACGGTCTGTAAA 60.495 47.826 9.88 1.13 0.00 2.01
250 251 3.842007 TCCCTTTGACGGTCTGTAAAA 57.158 42.857 9.88 0.78 29.96 1.52
251 252 4.153673 TCCCTTTGACGGTCTGTAAAAA 57.846 40.909 9.88 0.42 30.30 1.94
252 253 3.878699 TCCCTTTGACGGTCTGTAAAAAC 59.121 43.478 9.88 0.00 30.30 2.43
253 254 3.004002 CCCTTTGACGGTCTGTAAAAACC 59.996 47.826 9.88 0.00 30.30 3.27
254 255 3.628487 CCTTTGACGGTCTGTAAAAACCA 59.372 43.478 9.88 0.00 35.13 3.67
255 256 4.261031 CCTTTGACGGTCTGTAAAAACCAG 60.261 45.833 9.88 0.00 35.13 4.00
256 257 3.547054 TGACGGTCTGTAAAAACCAGT 57.453 42.857 9.88 0.00 35.13 4.00
257 258 3.876341 TGACGGTCTGTAAAAACCAGTT 58.124 40.909 9.88 0.00 35.13 3.16
258 259 3.623960 TGACGGTCTGTAAAAACCAGTTG 59.376 43.478 9.88 0.00 35.13 3.16
259 260 3.613030 ACGGTCTGTAAAAACCAGTTGT 58.387 40.909 0.00 0.00 35.13 3.32
260 261 4.011698 ACGGTCTGTAAAAACCAGTTGTT 58.988 39.130 0.00 0.00 39.43 2.83
261 262 5.184711 ACGGTCTGTAAAAACCAGTTGTTA 58.815 37.500 0.00 0.00 35.67 2.41
262 263 5.065090 ACGGTCTGTAAAAACCAGTTGTTAC 59.935 40.000 14.20 14.20 41.41 2.50
263 264 5.504392 GGTCTGTAAAAACCAGTTGTTACG 58.496 41.667 15.47 11.52 43.05 3.18
264 265 5.504392 GTCTGTAAAAACCAGTTGTTACGG 58.496 41.667 19.84 19.84 44.92 4.02
265 266 5.065090 GTCTGTAAAAACCAGTTGTTACGGT 59.935 40.000 22.85 0.00 44.35 4.83
266 267 5.064962 TCTGTAAAAACCAGTTGTTACGGTG 59.935 40.000 22.85 14.01 44.35 4.94
267 268 2.855660 AAAACCAGTTGTTACGGTGC 57.144 45.000 0.00 0.00 35.67 5.01
268 269 0.658897 AAACCAGTTGTTACGGTGCG 59.341 50.000 0.00 0.00 35.67 5.34
269 270 0.179078 AACCAGTTGTTACGGTGCGA 60.179 50.000 0.00 0.00 34.69 5.10
270 271 0.179078 ACCAGTTGTTACGGTGCGAA 60.179 50.000 0.00 0.00 32.48 4.70
271 272 0.511221 CCAGTTGTTACGGTGCGAAG 59.489 55.000 0.00 0.00 0.00 3.79
272 273 0.511221 CAGTTGTTACGGTGCGAAGG 59.489 55.000 0.00 0.00 0.00 3.46
273 274 0.390124 AGTTGTTACGGTGCGAAGGA 59.610 50.000 0.00 0.00 0.00 3.36
274 275 1.001633 AGTTGTTACGGTGCGAAGGAT 59.998 47.619 0.00 0.00 0.00 3.24
275 276 1.802365 GTTGTTACGGTGCGAAGGATT 59.198 47.619 0.00 0.00 0.00 3.01
276 277 1.434555 TGTTACGGTGCGAAGGATTG 58.565 50.000 0.00 0.00 0.00 2.67
277 278 0.096454 GTTACGGTGCGAAGGATTGC 59.904 55.000 0.00 0.00 0.00 3.56
278 279 0.320858 TTACGGTGCGAAGGATTGCA 60.321 50.000 0.00 0.00 39.13 4.08
282 283 4.490696 TGCGAAGGATTGCACCAA 57.509 50.000 0.00 0.00 35.90 3.67
283 284 1.956043 TGCGAAGGATTGCACCAAC 59.044 52.632 0.00 0.00 35.90 3.77
284 285 0.821301 TGCGAAGGATTGCACCAACA 60.821 50.000 0.00 0.00 35.90 3.33
285 286 0.109597 GCGAAGGATTGCACCAACAG 60.110 55.000 0.00 0.00 0.00 3.16
286 287 0.109597 CGAAGGATTGCACCAACAGC 60.110 55.000 0.00 0.00 0.00 4.40
287 288 0.244721 GAAGGATTGCACCAACAGCC 59.755 55.000 0.00 0.00 0.00 4.85
288 289 1.187567 AAGGATTGCACCAACAGCCC 61.188 55.000 0.00 0.00 0.00 5.19
289 290 1.907807 GGATTGCACCAACAGCCCA 60.908 57.895 0.00 0.00 0.00 5.36
290 291 1.588082 GATTGCACCAACAGCCCAG 59.412 57.895 0.00 0.00 0.00 4.45
291 292 1.152483 ATTGCACCAACAGCCCAGT 60.152 52.632 0.00 0.00 0.00 4.00
292 293 0.760189 ATTGCACCAACAGCCCAGTT 60.760 50.000 0.00 0.00 0.00 3.16
293 294 1.674764 TTGCACCAACAGCCCAGTTG 61.675 55.000 7.17 7.17 46.44 3.16
294 295 2.730094 CACCAACAGCCCAGTTGC 59.270 61.111 8.35 0.00 45.73 4.17
295 296 2.126596 CACCAACAGCCCAGTTGCA 61.127 57.895 8.35 0.00 45.73 4.08
296 297 1.381056 ACCAACAGCCCAGTTGCAA 60.381 52.632 0.00 0.00 45.73 4.08
297 298 0.975040 ACCAACAGCCCAGTTGCAAA 60.975 50.000 0.00 0.00 45.73 3.68
298 299 0.393820 CCAACAGCCCAGTTGCAAAT 59.606 50.000 0.00 0.00 45.73 2.32
299 300 1.606224 CCAACAGCCCAGTTGCAAATC 60.606 52.381 0.00 0.00 45.73 2.17
300 301 1.342174 CAACAGCCCAGTTGCAAATCT 59.658 47.619 0.00 0.00 41.95 2.40
301 302 2.557924 CAACAGCCCAGTTGCAAATCTA 59.442 45.455 0.00 0.00 41.95 1.98
302 303 2.440409 ACAGCCCAGTTGCAAATCTAG 58.560 47.619 0.00 0.00 0.00 2.43
303 304 2.040278 ACAGCCCAGTTGCAAATCTAGA 59.960 45.455 0.00 0.00 0.00 2.43
304 305 2.421424 CAGCCCAGTTGCAAATCTAGAC 59.579 50.000 0.00 0.00 0.00 2.59
305 306 2.307098 AGCCCAGTTGCAAATCTAGACT 59.693 45.455 0.00 0.00 0.00 3.24
306 307 3.519510 AGCCCAGTTGCAAATCTAGACTA 59.480 43.478 0.00 0.00 0.00 2.59
307 308 4.164988 AGCCCAGTTGCAAATCTAGACTAT 59.835 41.667 0.00 0.00 0.00 2.12
308 309 5.366768 AGCCCAGTTGCAAATCTAGACTATA 59.633 40.000 0.00 0.00 0.00 1.31
309 310 5.698545 GCCCAGTTGCAAATCTAGACTATAG 59.301 44.000 0.00 0.00 0.00 1.31
310 311 6.463049 GCCCAGTTGCAAATCTAGACTATAGA 60.463 42.308 6.78 0.00 0.00 1.98
311 312 7.500992 CCCAGTTGCAAATCTAGACTATAGAA 58.499 38.462 6.78 0.00 0.00 2.10
312 313 7.655328 CCCAGTTGCAAATCTAGACTATAGAAG 59.345 40.741 6.78 1.21 0.00 2.85
313 314 8.417106 CCAGTTGCAAATCTAGACTATAGAAGA 58.583 37.037 6.78 6.70 0.00 2.87
314 315 9.462174 CAGTTGCAAATCTAGACTATAGAAGAG 57.538 37.037 6.78 0.24 0.00 2.85
315 316 8.637986 AGTTGCAAATCTAGACTATAGAAGAGG 58.362 37.037 6.78 2.62 0.00 3.69
316 317 8.417884 GTTGCAAATCTAGACTATAGAAGAGGT 58.582 37.037 6.78 0.00 0.00 3.85
317 318 8.540507 TGCAAATCTAGACTATAGAAGAGGTT 57.459 34.615 6.78 0.00 0.00 3.50
318 319 8.417106 TGCAAATCTAGACTATAGAAGAGGTTG 58.583 37.037 6.78 13.49 0.00 3.77
319 320 7.383843 GCAAATCTAGACTATAGAAGAGGTTGC 59.616 40.741 21.97 21.97 36.56 4.17
320 321 8.637986 CAAATCTAGACTATAGAAGAGGTTGCT 58.362 37.037 6.78 0.00 0.00 3.91
321 322 7.996098 ATCTAGACTATAGAAGAGGTTGCTC 57.004 40.000 6.78 0.00 0.00 4.26
322 323 6.300703 TCTAGACTATAGAAGAGGTTGCTCC 58.699 44.000 6.78 0.00 0.00 4.70
323 324 4.219919 AGACTATAGAAGAGGTTGCTCCC 58.780 47.826 6.78 0.00 36.75 4.30
324 325 3.310193 ACTATAGAAGAGGTTGCTCCCC 58.690 50.000 6.78 0.00 36.75 4.81
325 326 1.123928 ATAGAAGAGGTTGCTCCCCG 58.876 55.000 0.00 0.00 36.75 5.73
326 327 0.040646 TAGAAGAGGTTGCTCCCCGA 59.959 55.000 0.00 0.00 36.75 5.14
327 328 0.618968 AGAAGAGGTTGCTCCCCGAT 60.619 55.000 0.00 0.00 36.75 4.18
328 329 0.253327 GAAGAGGTTGCTCCCCGATT 59.747 55.000 0.00 0.00 36.75 3.34
329 330 0.253327 AAGAGGTTGCTCCCCGATTC 59.747 55.000 0.00 0.00 36.75 2.52
330 331 1.521681 GAGGTTGCTCCCCGATTCG 60.522 63.158 0.00 0.00 36.75 3.34
331 332 2.240162 GAGGTTGCTCCCCGATTCGT 62.240 60.000 5.20 0.00 36.75 3.85
332 333 1.814169 GGTTGCTCCCCGATTCGTC 60.814 63.158 5.20 0.00 0.00 4.20
333 334 1.814169 GTTGCTCCCCGATTCGTCC 60.814 63.158 5.20 0.00 0.00 4.79
334 335 3.365291 TTGCTCCCCGATTCGTCCG 62.365 63.158 5.20 0.00 0.00 4.79
335 336 3.524606 GCTCCCCGATTCGTCCGA 61.525 66.667 5.20 0.00 0.00 4.55
336 337 2.857744 GCTCCCCGATTCGTCCGAT 61.858 63.158 5.20 0.00 0.00 4.18
337 338 1.286260 CTCCCCGATTCGTCCGATC 59.714 63.158 5.20 0.00 0.00 3.69
338 339 1.452953 CTCCCCGATTCGTCCGATCA 61.453 60.000 5.20 0.00 0.00 2.92
339 340 1.038681 TCCCCGATTCGTCCGATCAA 61.039 55.000 5.20 0.00 0.00 2.57
340 341 0.179094 CCCCGATTCGTCCGATCAAA 60.179 55.000 5.20 0.00 0.00 2.69
341 342 1.647346 CCCGATTCGTCCGATCAAAA 58.353 50.000 5.20 0.00 0.00 2.44
342 343 2.210116 CCCGATTCGTCCGATCAAAAT 58.790 47.619 5.20 0.00 0.00 1.82
343 344 2.221055 CCCGATTCGTCCGATCAAAATC 59.779 50.000 5.20 0.00 0.00 2.17
344 345 2.863740 CCGATTCGTCCGATCAAAATCA 59.136 45.455 5.20 0.00 31.76 2.57
345 346 3.060272 CCGATTCGTCCGATCAAAATCAG 60.060 47.826 5.20 0.00 31.76 2.90
346 347 3.796717 CGATTCGTCCGATCAAAATCAGA 59.203 43.478 0.00 0.00 31.76 3.27
347 348 4.445718 CGATTCGTCCGATCAAAATCAGAT 59.554 41.667 0.00 0.00 31.76 2.90
348 349 5.387855 CGATTCGTCCGATCAAAATCAGATC 60.388 44.000 0.00 0.00 38.77 2.75
349 350 3.717707 TCGTCCGATCAAAATCAGATCC 58.282 45.455 0.00 0.00 38.90 3.36
350 351 3.132111 TCGTCCGATCAAAATCAGATCCA 59.868 43.478 0.00 0.00 38.90 3.41
351 352 3.871006 CGTCCGATCAAAATCAGATCCAA 59.129 43.478 0.00 0.00 38.90 3.53
352 353 4.260375 CGTCCGATCAAAATCAGATCCAAC 60.260 45.833 0.00 0.00 38.90 3.77
353 354 3.871006 TCCGATCAAAATCAGATCCAACG 59.129 43.478 0.00 0.00 38.90 4.10
354 355 3.546815 CCGATCAAAATCAGATCCAACGC 60.547 47.826 0.00 0.00 38.90 4.84
355 356 3.546815 CGATCAAAATCAGATCCAACGCC 60.547 47.826 0.00 0.00 38.90 5.68
356 357 2.091541 TCAAAATCAGATCCAACGCCC 58.908 47.619 0.00 0.00 0.00 6.13
357 358 1.818060 CAAAATCAGATCCAACGCCCA 59.182 47.619 0.00 0.00 0.00 5.36
358 359 1.463674 AAATCAGATCCAACGCCCAC 58.536 50.000 0.00 0.00 0.00 4.61
360 361 2.593468 ATCAGATCCAACGCCCACGG 62.593 60.000 0.00 0.00 46.04 4.94
361 362 3.000819 AGATCCAACGCCCACGGA 61.001 61.111 0.00 0.00 46.04 4.69
362 363 2.511600 GATCCAACGCCCACGGAG 60.512 66.667 0.00 0.00 46.04 4.63
363 364 4.096003 ATCCAACGCCCACGGAGG 62.096 66.667 0.00 0.00 46.04 4.30
382 383 4.400109 GGTCGACGCGCACAGAGA 62.400 66.667 5.73 0.00 0.00 3.10
383 384 2.872001 GTCGACGCGCACAGAGAG 60.872 66.667 5.73 0.00 0.00 3.20
384 385 3.047877 TCGACGCGCACAGAGAGA 61.048 61.111 5.73 0.00 0.00 3.10
385 386 2.101185 CGACGCGCACAGAGAGAT 59.899 61.111 5.73 0.00 0.00 2.75
386 387 1.087771 TCGACGCGCACAGAGAGATA 61.088 55.000 5.73 0.00 0.00 1.98
387 388 0.926174 CGACGCGCACAGAGAGATAC 60.926 60.000 5.73 0.00 0.00 2.24
388 389 0.926174 GACGCGCACAGAGAGATACG 60.926 60.000 5.73 0.00 0.00 3.06
389 390 1.655654 CGCGCACAGAGAGATACGG 60.656 63.158 8.75 0.00 0.00 4.02
390 391 1.433879 GCGCACAGAGAGATACGGT 59.566 57.895 0.30 0.00 0.00 4.83
391 392 0.867753 GCGCACAGAGAGATACGGTG 60.868 60.000 0.30 0.00 0.00 4.94
392 393 0.248661 CGCACAGAGAGATACGGTGG 60.249 60.000 0.00 0.00 0.00 4.61
393 394 0.103208 GCACAGAGAGATACGGTGGG 59.897 60.000 0.00 0.00 0.00 4.61
394 395 1.475403 CACAGAGAGATACGGTGGGT 58.525 55.000 0.00 0.00 0.00 4.51
395 396 1.135139 CACAGAGAGATACGGTGGGTG 59.865 57.143 0.00 0.00 0.00 4.61
396 397 1.005569 ACAGAGAGATACGGTGGGTGA 59.994 52.381 0.00 0.00 0.00 4.02
397 398 1.678627 CAGAGAGATACGGTGGGTGAG 59.321 57.143 0.00 0.00 0.00 3.51
398 399 0.386113 GAGAGATACGGTGGGTGAGC 59.614 60.000 0.00 0.00 0.00 4.26
399 400 1.043673 AGAGATACGGTGGGTGAGCC 61.044 60.000 0.00 0.00 0.00 4.70
400 401 1.305802 AGATACGGTGGGTGAGCCA 60.306 57.895 0.00 0.00 36.17 4.75
401 402 0.691078 AGATACGGTGGGTGAGCCAT 60.691 55.000 6.66 0.00 36.17 4.40
402 403 1.045407 GATACGGTGGGTGAGCCATA 58.955 55.000 6.66 0.00 36.17 2.74
403 404 1.000955 GATACGGTGGGTGAGCCATAG 59.999 57.143 6.66 6.73 36.17 2.23
404 405 1.682451 TACGGTGGGTGAGCCATAGC 61.682 60.000 6.66 0.00 40.32 2.97
405 406 2.203070 GGTGGGTGAGCCATAGCG 60.203 66.667 6.66 0.00 46.67 4.26
406 407 2.584608 GTGGGTGAGCCATAGCGT 59.415 61.111 6.66 0.00 46.67 5.07
407 408 1.078426 GTGGGTGAGCCATAGCGTT 60.078 57.895 6.66 0.00 46.67 4.84
408 409 0.676782 GTGGGTGAGCCATAGCGTTT 60.677 55.000 6.66 0.00 46.67 3.60
409 410 0.906066 TGGGTGAGCCATAGCGTTTA 59.094 50.000 0.00 0.00 46.67 2.01
410 411 1.279558 TGGGTGAGCCATAGCGTTTAA 59.720 47.619 0.00 0.00 46.67 1.52
411 412 2.092646 TGGGTGAGCCATAGCGTTTAAT 60.093 45.455 0.00 0.00 46.67 1.40
412 413 2.548480 GGGTGAGCCATAGCGTTTAATC 59.452 50.000 0.00 0.00 46.67 1.75
413 414 3.202906 GGTGAGCCATAGCGTTTAATCA 58.797 45.455 0.00 0.00 46.67 2.57
414 415 3.625764 GGTGAGCCATAGCGTTTAATCAA 59.374 43.478 0.00 0.00 46.67 2.57
415 416 4.095782 GGTGAGCCATAGCGTTTAATCAAA 59.904 41.667 0.00 0.00 46.67 2.69
416 417 5.266242 GTGAGCCATAGCGTTTAATCAAAG 58.734 41.667 0.00 0.00 46.67 2.77
417 418 4.941263 TGAGCCATAGCGTTTAATCAAAGT 59.059 37.500 0.00 0.00 46.67 2.66
418 419 5.163764 TGAGCCATAGCGTTTAATCAAAGTG 60.164 40.000 0.00 0.00 46.67 3.16
419 420 4.941263 AGCCATAGCGTTTAATCAAAGTGA 59.059 37.500 0.00 0.00 46.67 3.41
420 421 5.065218 AGCCATAGCGTTTAATCAAAGTGAG 59.935 40.000 0.00 0.00 46.67 3.51
421 422 5.064707 GCCATAGCGTTTAATCAAAGTGAGA 59.935 40.000 0.00 0.00 0.00 3.27
422 423 6.403200 GCCATAGCGTTTAATCAAAGTGAGAA 60.403 38.462 0.00 0.00 0.00 2.87
423 424 7.526608 CCATAGCGTTTAATCAAAGTGAGAAA 58.473 34.615 0.00 0.00 0.00 2.52
424 425 7.693951 CCATAGCGTTTAATCAAAGTGAGAAAG 59.306 37.037 0.00 0.00 0.00 2.62
425 426 6.861065 AGCGTTTAATCAAAGTGAGAAAGA 57.139 33.333 0.00 0.00 0.00 2.52
426 427 7.259290 AGCGTTTAATCAAAGTGAGAAAGAA 57.741 32.000 0.00 0.00 0.00 2.52
427 428 7.875971 AGCGTTTAATCAAAGTGAGAAAGAAT 58.124 30.769 0.00 0.00 0.00 2.40
428 429 8.352942 AGCGTTTAATCAAAGTGAGAAAGAATT 58.647 29.630 0.00 0.00 0.00 2.17
429 430 9.607285 GCGTTTAATCAAAGTGAGAAAGAATTA 57.393 29.630 0.00 0.00 0.00 1.40
440 441 8.885494 AGTGAGAAAGAATTACATAGAGATGC 57.115 34.615 0.00 0.00 36.43 3.91
441 442 8.481314 AGTGAGAAAGAATTACATAGAGATGCA 58.519 33.333 0.00 0.00 36.43 3.96
442 443 9.102757 GTGAGAAAGAATTACATAGAGATGCAA 57.897 33.333 0.00 0.00 36.43 4.08
443 444 9.322773 TGAGAAAGAATTACATAGAGATGCAAG 57.677 33.333 0.00 0.00 36.43 4.01
444 445 9.323985 GAGAAAGAATTACATAGAGATGCAAGT 57.676 33.333 0.00 0.00 36.43 3.16
445 446 9.323985 AGAAAGAATTACATAGAGATGCAAGTC 57.676 33.333 0.00 0.00 34.85 3.01
446 447 9.323985 GAAAGAATTACATAGAGATGCAAGTCT 57.676 33.333 6.44 6.44 42.71 3.24
447 448 8.659925 AAGAATTACATAGAGATGCAAGTCTG 57.340 34.615 10.68 0.24 40.96 3.51
448 449 8.016301 AGAATTACATAGAGATGCAAGTCTGA 57.984 34.615 10.68 0.00 40.54 3.27
449 450 8.649591 AGAATTACATAGAGATGCAAGTCTGAT 58.350 33.333 10.68 0.67 40.54 2.90
450 451 8.604640 AATTACATAGAGATGCAAGTCTGATG 57.395 34.615 10.68 8.64 36.43 3.07
451 452 5.866159 ACATAGAGATGCAAGTCTGATGA 57.134 39.130 10.68 0.00 36.43 2.92
452 453 6.231258 ACATAGAGATGCAAGTCTGATGAA 57.769 37.500 10.68 0.00 36.43 2.57
453 454 6.647229 ACATAGAGATGCAAGTCTGATGAAA 58.353 36.000 10.68 0.00 36.43 2.69
454 455 6.538021 ACATAGAGATGCAAGTCTGATGAAAC 59.462 38.462 10.68 0.00 36.43 2.78
455 456 4.260170 AGAGATGCAAGTCTGATGAAACC 58.740 43.478 0.00 0.00 0.00 3.27
456 457 4.005650 GAGATGCAAGTCTGATGAAACCA 58.994 43.478 0.00 0.00 0.00 3.67
457 458 4.401022 AGATGCAAGTCTGATGAAACCAA 58.599 39.130 0.00 0.00 0.00 3.67
458 459 4.828939 AGATGCAAGTCTGATGAAACCAAA 59.171 37.500 0.00 0.00 0.00 3.28
459 460 4.998671 TGCAAGTCTGATGAAACCAAAA 57.001 36.364 0.00 0.00 0.00 2.44
460 461 5.336150 TGCAAGTCTGATGAAACCAAAAA 57.664 34.783 0.00 0.00 0.00 1.94
481 482 7.619512 AAAAATACTCTCTCCGATCCCTATT 57.380 36.000 0.00 0.00 0.00 1.73
482 483 8.722622 AAAAATACTCTCTCCGATCCCTATTA 57.277 34.615 0.00 0.00 0.00 0.98
483 484 8.722622 AAAATACTCTCTCCGATCCCTATTAA 57.277 34.615 0.00 0.00 0.00 1.40
484 485 7.948034 AATACTCTCTCCGATCCCTATTAAG 57.052 40.000 0.00 0.00 0.00 1.85
485 486 5.327737 ACTCTCTCCGATCCCTATTAAGT 57.672 43.478 0.00 0.00 0.00 2.24
486 487 5.074115 ACTCTCTCCGATCCCTATTAAGTG 58.926 45.833 0.00 0.00 0.00 3.16
487 488 5.063017 TCTCTCCGATCCCTATTAAGTGT 57.937 43.478 0.00 0.00 0.00 3.55
488 489 5.071370 TCTCTCCGATCCCTATTAAGTGTC 58.929 45.833 0.00 0.00 0.00 3.67
489 490 4.800023 TCTCCGATCCCTATTAAGTGTCA 58.200 43.478 0.00 0.00 0.00 3.58
490 491 4.583489 TCTCCGATCCCTATTAAGTGTCAC 59.417 45.833 0.00 0.00 0.00 3.67
491 492 4.543689 TCCGATCCCTATTAAGTGTCACT 58.456 43.478 0.00 0.00 0.00 3.41
492 493 4.341235 TCCGATCCCTATTAAGTGTCACTG 59.659 45.833 6.18 0.00 0.00 3.66
493 494 4.341235 CCGATCCCTATTAAGTGTCACTGA 59.659 45.833 6.18 0.00 0.00 3.41
494 495 5.011125 CCGATCCCTATTAAGTGTCACTGAT 59.989 44.000 6.18 6.79 0.00 2.90
495 496 6.463049 CCGATCCCTATTAAGTGTCACTGATT 60.463 42.308 6.18 0.00 0.00 2.57
496 497 6.986817 CGATCCCTATTAAGTGTCACTGATTT 59.013 38.462 6.18 0.00 0.00 2.17
497 498 8.141909 CGATCCCTATTAAGTGTCACTGATTTA 58.858 37.037 6.18 0.00 0.00 1.40
498 499 9.482627 GATCCCTATTAAGTGTCACTGATTTAG 57.517 37.037 6.18 6.00 0.00 1.85
499 500 8.375493 TCCCTATTAAGTGTCACTGATTTAGT 57.625 34.615 6.18 0.00 41.36 2.24
500 501 9.483489 TCCCTATTAAGTGTCACTGATTTAGTA 57.517 33.333 6.18 0.00 37.60 1.82
501 502 9.751542 CCCTATTAAGTGTCACTGATTTAGTAG 57.248 37.037 6.18 5.77 37.60 2.57
509 510 9.561069 AGTGTCACTGATTTAGTAGAATTTTGT 57.439 29.630 4.21 0.00 37.60 2.83
572 573 3.844577 TTGTTTTGAAACGAAACCCGA 57.155 38.095 10.73 0.00 41.74 5.14
624 633 4.891168 TGTGCTCACGTATCCTTTCCTATA 59.109 41.667 0.00 0.00 0.00 1.31
634 643 9.160496 ACGTATCCTTTCCTATATTCTAGTACG 57.840 37.037 0.00 0.00 35.97 3.67
635 644 9.160496 CGTATCCTTTCCTATATTCTAGTACGT 57.840 37.037 0.00 0.00 0.00 3.57
650 659 8.955061 TTCTAGTACGTAGTTTAACACATGTC 57.045 34.615 8.48 0.00 37.78 3.06
656 665 7.074507 ACGTAGTTTAACACATGTCACAAAA 57.925 32.000 0.00 0.00 37.78 2.44
726 735 6.927936 CACAACACATGGGTCAATTCAAATAA 59.072 34.615 0.00 0.00 0.00 1.40
903 913 1.675641 GCCTGTCGATGGGCAAACT 60.676 57.895 21.43 0.00 46.84 2.66
905 915 0.321564 CCTGTCGATGGGCAAACTGA 60.322 55.000 0.00 0.00 0.00 3.41
916 926 1.404986 GGCAAACTGACATGCATGCAT 60.405 47.619 27.46 27.46 44.32 3.96
2844 3164 1.136774 CAAGATCAGCGACGTCGGA 59.863 57.895 36.13 26.38 40.23 4.55
2934 3254 0.824109 CCTTCTGCTACATCGACCCA 59.176 55.000 0.00 0.00 0.00 4.51
3372 3692 2.125326 CCGACTCCCGCCATGACTA 61.125 63.158 0.00 0.00 36.84 2.59
3373 3693 1.065928 CGACTCCCGCCATGACTAC 59.934 63.158 0.00 0.00 0.00 2.73
3374 3694 1.065928 GACTCCCGCCATGACTACG 59.934 63.158 0.00 0.00 0.00 3.51
3383 3703 1.092348 CCATGACTACGACGACCTCA 58.908 55.000 0.00 0.00 0.00 3.86
3399 3719 0.024238 CTCAACGAATCTCGCAAGCG 59.976 55.000 8.36 8.36 45.12 4.68
3513 3838 0.389948 CCTCCGAGAAGAACCAACGG 60.390 60.000 0.00 0.00 44.09 4.44
3617 3951 1.403780 GCAGCAAGATGGCCTTTCAAG 60.404 52.381 3.32 0.00 31.42 3.02
3728 4063 7.437862 GTGATTAGACCAAGATTTGTGCAAAAA 59.562 33.333 4.10 4.10 33.56 1.94
3894 4229 2.536728 CGCGCTAAAATCTGATTTGCGA 60.537 45.455 33.32 16.91 40.88 5.10
3916 4251 1.303317 GCCCATCGTCAGGTTTGGT 60.303 57.895 0.00 0.00 0.00 3.67
3918 4253 0.250727 CCCATCGTCAGGTTTGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
3942 4277 2.034879 GCAGCGCTGGTTCTAGCAA 61.035 57.895 36.47 0.00 43.87 3.91
4035 4398 2.813172 GCCCACATTTGTTCATTTTGGG 59.187 45.455 0.00 0.00 44.45 4.12
4037 4400 3.474600 CCACATTTGTTCATTTTGGGCA 58.525 40.909 0.00 0.00 0.00 5.36
4038 4406 3.250521 CCACATTTGTTCATTTTGGGCAC 59.749 43.478 0.00 0.00 0.00 5.01
4055 4423 2.725723 GGCACAATTTCACACATCAACG 59.274 45.455 0.00 0.00 0.00 4.10
4068 4436 2.100584 ACATCAACGCAAAACACATGGT 59.899 40.909 0.00 0.00 0.00 3.55
4119 4510 1.134175 CAAGTTCGTGCCCACAAGTTT 59.866 47.619 0.00 0.00 0.00 2.66
4120 4511 2.335316 AGTTCGTGCCCACAAGTTTA 57.665 45.000 0.00 0.00 0.00 2.01
4121 4512 2.645802 AGTTCGTGCCCACAAGTTTAA 58.354 42.857 0.00 0.00 0.00 1.52
4122 4513 3.018149 AGTTCGTGCCCACAAGTTTAAA 58.982 40.909 0.00 0.00 0.00 1.52
4123 4514 3.634910 AGTTCGTGCCCACAAGTTTAAAT 59.365 39.130 0.00 0.00 0.00 1.40
4124 4515 4.098807 AGTTCGTGCCCACAAGTTTAAATT 59.901 37.500 0.00 0.00 0.00 1.82
4179 4593 2.223456 TGCAAACCAAGTTCATGACACG 60.223 45.455 0.00 0.00 0.00 4.49
4245 4659 1.957177 TCCTCATCTTCCTCCGATTCG 59.043 52.381 0.00 0.00 0.00 3.34
4291 4707 3.251484 TCCTCCTCCTCTTCATTGTTGT 58.749 45.455 0.00 0.00 0.00 3.32
4293 4709 3.244700 CCTCCTCCTCTTCATTGTTGTGT 60.245 47.826 0.00 0.00 0.00 3.72
4307 4723 1.933853 GTTGTGTGCCGTATCCTCATC 59.066 52.381 0.00 0.00 0.00 2.92
4308 4724 1.190643 TGTGTGCCGTATCCTCATCA 58.809 50.000 0.00 0.00 0.00 3.07
4309 4725 1.134818 TGTGTGCCGTATCCTCATCAC 60.135 52.381 0.00 0.00 0.00 3.06
4349 4765 1.200020 GTTGCCAAGATCTTCAACGGG 59.800 52.381 18.78 12.51 31.07 5.28
4453 4888 2.350895 CCCATGTCGTCCAAGCCA 59.649 61.111 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.219213 TGGAGGAGAGGGAAGGATCTC 59.781 57.143 0.00 0.00 41.05 2.75
1 2 1.324014 TGGAGGAGAGGGAAGGATCT 58.676 55.000 0.00 0.00 0.00 2.75
2 3 2.256306 GATGGAGGAGAGGGAAGGATC 58.744 57.143 0.00 0.00 0.00 3.36
4 5 0.105964 CGATGGAGGAGAGGGAAGGA 60.106 60.000 0.00 0.00 0.00 3.36
5 6 1.753368 GCGATGGAGGAGAGGGAAGG 61.753 65.000 0.00 0.00 0.00 3.46
6 7 1.745264 GCGATGGAGGAGAGGGAAG 59.255 63.158 0.00 0.00 0.00 3.46
7 8 2.127869 CGCGATGGAGGAGAGGGAA 61.128 63.158 0.00 0.00 0.00 3.97
9 10 4.292178 GCGCGATGGAGGAGAGGG 62.292 72.222 12.10 0.00 0.00 4.30
10 11 4.292178 GGCGCGATGGAGGAGAGG 62.292 72.222 12.10 0.00 0.00 3.69
12 13 3.531207 CAGGCGCGATGGAGGAGA 61.531 66.667 12.10 0.00 0.00 3.71
18 19 4.845580 AAGAGGCAGGCGCGATGG 62.846 66.667 12.10 0.00 39.92 3.51
19 20 3.570638 CAAGAGGCAGGCGCGATG 61.571 66.667 12.10 9.16 39.92 3.84
20 21 3.729965 CTCAAGAGGCAGGCGCGAT 62.730 63.158 12.10 0.00 39.92 4.58
21 22 4.441695 CTCAAGAGGCAGGCGCGA 62.442 66.667 12.10 0.00 39.92 5.87
30 31 1.294659 GACAACGCTGGCTCAAGAGG 61.295 60.000 0.00 0.00 0.00 3.69
31 32 1.294659 GGACAACGCTGGCTCAAGAG 61.295 60.000 0.00 0.00 0.00 2.85
32 33 1.301716 GGACAACGCTGGCTCAAGA 60.302 57.895 0.00 0.00 0.00 3.02
33 34 0.886490 AAGGACAACGCTGGCTCAAG 60.886 55.000 0.00 0.00 0.00 3.02
34 35 0.884704 GAAGGACAACGCTGGCTCAA 60.885 55.000 0.00 0.00 0.00 3.02
35 36 1.301716 GAAGGACAACGCTGGCTCA 60.302 57.895 0.00 0.00 0.00 4.26
36 37 2.383527 CGAAGGACAACGCTGGCTC 61.384 63.158 0.00 0.00 0.00 4.70
37 38 2.357517 CGAAGGACAACGCTGGCT 60.358 61.111 0.00 0.00 0.00 4.75
62 63 0.039346 TTGTTGCGACACCATGCATG 60.039 50.000 20.19 20.19 41.42 4.06
63 64 0.241749 CTTGTTGCGACACCATGCAT 59.758 50.000 6.19 0.00 41.42 3.96
64 65 1.653667 CTTGTTGCGACACCATGCA 59.346 52.632 6.19 0.00 39.81 3.96
65 66 1.730547 GCTTGTTGCGACACCATGC 60.731 57.895 6.19 5.60 34.98 4.06
66 67 4.539152 GCTTGTTGCGACACCATG 57.461 55.556 6.19 0.00 34.98 3.66
83 84 2.361610 ACGCCATGGCTTTGGGAG 60.362 61.111 33.07 18.49 37.24 4.30
84 85 2.361104 GACGCCATGGCTTTGGGA 60.361 61.111 33.07 0.00 37.24 4.37
85 86 3.814268 CGACGCCATGGCTTTGGG 61.814 66.667 33.07 19.95 37.24 4.12
86 87 4.481112 GCGACGCCATGGCTTTGG 62.481 66.667 33.07 21.36 39.94 3.28
87 88 3.434319 AGCGACGCCATGGCTTTG 61.434 61.111 33.07 27.92 39.81 2.77
88 89 3.434319 CAGCGACGCCATGGCTTT 61.434 61.111 33.07 20.65 39.81 3.51
92 93 2.969238 GATCCAGCGACGCCATGG 60.969 66.667 19.22 19.22 35.30 3.66
93 94 2.969238 GGATCCAGCGACGCCATG 60.969 66.667 17.79 9.29 0.00 3.66
94 95 4.241555 GGGATCCAGCGACGCCAT 62.242 66.667 17.79 6.20 0.00 4.40
96 97 4.467084 TTGGGATCCAGCGACGCC 62.467 66.667 17.79 0.00 33.81 5.68
97 98 3.195698 GTTGGGATCCAGCGACGC 61.196 66.667 15.23 13.03 33.81 5.19
98 99 2.100631 GTGTTGGGATCCAGCGACG 61.101 63.158 15.23 0.00 37.56 5.12
99 100 0.605319 TTGTGTTGGGATCCAGCGAC 60.605 55.000 15.23 7.73 37.56 5.19
100 101 0.605319 GTTGTGTTGGGATCCAGCGA 60.605 55.000 15.23 0.00 37.56 4.93
101 102 0.606401 AGTTGTGTTGGGATCCAGCG 60.606 55.000 15.23 0.00 37.56 5.18
102 103 0.883833 CAGTTGTGTTGGGATCCAGC 59.116 55.000 15.23 3.22 33.81 4.85
103 104 0.883833 GCAGTTGTGTTGGGATCCAG 59.116 55.000 15.23 0.00 33.81 3.86
104 105 0.888736 CGCAGTTGTGTTGGGATCCA 60.889 55.000 15.23 0.00 0.00 3.41
105 106 1.875963 CGCAGTTGTGTTGGGATCC 59.124 57.895 1.92 1.92 0.00 3.36
106 107 1.210155 GCGCAGTTGTGTTGGGATC 59.790 57.895 0.30 0.00 0.00 3.36
107 108 2.268076 GGCGCAGTTGTGTTGGGAT 61.268 57.895 10.83 0.00 0.00 3.85
108 109 2.904866 GGCGCAGTTGTGTTGGGA 60.905 61.111 10.83 0.00 0.00 4.37
109 110 2.906897 AGGCGCAGTTGTGTTGGG 60.907 61.111 10.83 0.00 0.00 4.12
110 111 1.518056 ATGAGGCGCAGTTGTGTTGG 61.518 55.000 10.83 0.00 0.00 3.77
111 112 0.110056 GATGAGGCGCAGTTGTGTTG 60.110 55.000 10.83 0.00 0.00 3.33
112 113 1.237285 GGATGAGGCGCAGTTGTGTT 61.237 55.000 10.83 0.00 0.00 3.32
113 114 1.672356 GGATGAGGCGCAGTTGTGT 60.672 57.895 10.83 0.00 0.00 3.72
114 115 1.672030 TGGATGAGGCGCAGTTGTG 60.672 57.895 10.83 0.00 0.00 3.33
115 116 1.672356 GTGGATGAGGCGCAGTTGT 60.672 57.895 10.83 0.00 0.00 3.32
116 117 2.401766 GGTGGATGAGGCGCAGTTG 61.402 63.158 10.83 0.00 0.00 3.16
117 118 2.045926 GGTGGATGAGGCGCAGTT 60.046 61.111 10.83 0.00 0.00 3.16
118 119 3.005539 AGGTGGATGAGGCGCAGT 61.006 61.111 10.83 0.00 0.00 4.40
119 120 2.202987 GAGGTGGATGAGGCGCAG 60.203 66.667 10.83 0.00 0.00 5.18
120 121 4.147449 CGAGGTGGATGAGGCGCA 62.147 66.667 10.83 0.00 0.00 6.09
122 123 4.899239 GGCGAGGTGGATGAGGCG 62.899 72.222 0.00 0.00 0.00 5.52
123 124 4.899239 CGGCGAGGTGGATGAGGC 62.899 72.222 0.00 0.00 0.00 4.70
124 125 4.227134 CCGGCGAGGTGGATGAGG 62.227 72.222 9.30 0.00 34.51 3.86
125 126 4.899239 GCCGGCGAGGTGGATGAG 62.899 72.222 12.58 0.00 43.70 2.90
140 141 3.471806 GAAGTCGAGGGGAGGGCC 61.472 72.222 0.00 0.00 0.00 5.80
141 142 2.364448 AGAAGTCGAGGGGAGGGC 60.364 66.667 0.00 0.00 0.00 5.19
142 143 1.758906 GGAGAAGTCGAGGGGAGGG 60.759 68.421 0.00 0.00 0.00 4.30
143 144 0.753848 GAGGAGAAGTCGAGGGGAGG 60.754 65.000 0.00 0.00 0.00 4.30
144 145 0.257616 AGAGGAGAAGTCGAGGGGAG 59.742 60.000 0.00 0.00 0.00 4.30
145 146 0.033991 CAGAGGAGAAGTCGAGGGGA 60.034 60.000 0.00 0.00 0.00 4.81
146 147 0.033991 TCAGAGGAGAAGTCGAGGGG 60.034 60.000 0.00 0.00 0.00 4.79
147 148 2.065899 ATCAGAGGAGAAGTCGAGGG 57.934 55.000 0.00 0.00 0.00 4.30
148 149 2.360801 GGAATCAGAGGAGAAGTCGAGG 59.639 54.545 0.00 0.00 0.00 4.63
149 150 2.360801 GGGAATCAGAGGAGAAGTCGAG 59.639 54.545 0.00 0.00 0.00 4.04
150 151 2.379972 GGGAATCAGAGGAGAAGTCGA 58.620 52.381 0.00 0.00 0.00 4.20
151 152 1.066303 CGGGAATCAGAGGAGAAGTCG 59.934 57.143 0.00 0.00 0.00 4.18
152 153 1.202475 GCGGGAATCAGAGGAGAAGTC 60.202 57.143 0.00 0.00 0.00 3.01
153 154 0.827368 GCGGGAATCAGAGGAGAAGT 59.173 55.000 0.00 0.00 0.00 3.01
154 155 1.068434 GAGCGGGAATCAGAGGAGAAG 59.932 57.143 0.00 0.00 0.00 2.85
155 156 1.115467 GAGCGGGAATCAGAGGAGAA 58.885 55.000 0.00 0.00 0.00 2.87
156 157 0.260230 AGAGCGGGAATCAGAGGAGA 59.740 55.000 0.00 0.00 0.00 3.71
157 158 0.673437 GAGAGCGGGAATCAGAGGAG 59.327 60.000 0.00 0.00 0.00 3.69
158 159 0.033109 TGAGAGCGGGAATCAGAGGA 60.033 55.000 0.00 0.00 0.00 3.71
159 160 0.826715 TTGAGAGCGGGAATCAGAGG 59.173 55.000 0.00 0.00 0.00 3.69
160 161 2.548875 CTTTGAGAGCGGGAATCAGAG 58.451 52.381 0.00 0.00 0.00 3.35
161 162 1.208052 CCTTTGAGAGCGGGAATCAGA 59.792 52.381 0.00 0.00 0.00 3.27
162 163 1.208052 TCCTTTGAGAGCGGGAATCAG 59.792 52.381 0.00 0.00 0.00 2.90
163 164 1.275666 TCCTTTGAGAGCGGGAATCA 58.724 50.000 0.00 0.00 0.00 2.57
164 165 2.103941 AGATCCTTTGAGAGCGGGAATC 59.896 50.000 0.00 0.00 0.00 2.52
165 166 2.122768 AGATCCTTTGAGAGCGGGAAT 58.877 47.619 0.00 0.00 0.00 3.01
166 167 1.573108 AGATCCTTTGAGAGCGGGAA 58.427 50.000 0.00 0.00 0.00 3.97
167 168 2.091830 TCTAGATCCTTTGAGAGCGGGA 60.092 50.000 0.00 0.00 0.00 5.14
168 169 2.035321 GTCTAGATCCTTTGAGAGCGGG 59.965 54.545 0.00 0.00 0.00 6.13
169 170 2.287308 CGTCTAGATCCTTTGAGAGCGG 60.287 54.545 0.00 0.00 0.00 5.52
170 171 2.356382 ACGTCTAGATCCTTTGAGAGCG 59.644 50.000 0.00 0.00 0.00 5.03
171 172 3.547214 CGACGTCTAGATCCTTTGAGAGC 60.547 52.174 14.70 0.00 0.00 4.09
172 173 3.547214 GCGACGTCTAGATCCTTTGAGAG 60.547 52.174 14.70 0.00 0.00 3.20
173 174 2.355132 GCGACGTCTAGATCCTTTGAGA 59.645 50.000 14.70 0.00 0.00 3.27
174 175 2.356382 AGCGACGTCTAGATCCTTTGAG 59.644 50.000 14.70 0.00 0.00 3.02
175 176 2.097629 CAGCGACGTCTAGATCCTTTGA 59.902 50.000 14.70 0.00 0.00 2.69
176 177 2.455032 CAGCGACGTCTAGATCCTTTG 58.545 52.381 14.70 0.00 0.00 2.77
177 178 1.202313 GCAGCGACGTCTAGATCCTTT 60.202 52.381 14.70 0.00 0.00 3.11
178 179 0.382515 GCAGCGACGTCTAGATCCTT 59.617 55.000 14.70 0.00 0.00 3.36
179 180 1.448922 GGCAGCGACGTCTAGATCCT 61.449 60.000 14.70 0.00 0.00 3.24
180 181 1.008309 GGCAGCGACGTCTAGATCC 60.008 63.158 14.70 4.61 0.00 3.36
181 182 1.008309 GGGCAGCGACGTCTAGATC 60.008 63.158 14.70 0.43 0.00 2.75
182 183 0.179026 TAGGGCAGCGACGTCTAGAT 60.179 55.000 14.70 0.00 0.00 1.98
183 184 1.094073 GTAGGGCAGCGACGTCTAGA 61.094 60.000 14.70 0.00 0.00 2.43
184 185 1.355916 GTAGGGCAGCGACGTCTAG 59.644 63.158 14.70 4.22 0.00 2.43
185 186 2.117156 GGTAGGGCAGCGACGTCTA 61.117 63.158 14.70 0.00 0.00 2.59
186 187 3.450115 GGTAGGGCAGCGACGTCT 61.450 66.667 14.70 0.00 0.00 4.18
187 188 4.509737 GGGTAGGGCAGCGACGTC 62.510 72.222 5.18 5.18 0.00 4.34
189 190 4.208686 GAGGGTAGGGCAGCGACG 62.209 72.222 0.00 0.00 0.00 5.12
190 191 4.208686 CGAGGGTAGGGCAGCGAC 62.209 72.222 0.00 0.00 0.00 5.19
204 205 3.569049 AACGAACGACCTGGGCGAG 62.569 63.158 31.73 20.78 0.00 5.03
205 206 3.608662 AACGAACGACCTGGGCGA 61.609 61.111 31.73 0.00 0.00 5.54
206 207 3.411351 CAACGAACGACCTGGGCG 61.411 66.667 22.71 22.71 0.00 6.13
207 208 3.723348 GCAACGAACGACCTGGGC 61.723 66.667 0.00 0.00 0.00 5.36
208 209 3.411351 CGCAACGAACGACCTGGG 61.411 66.667 0.00 0.69 0.00 4.45
209 210 3.411351 CCGCAACGAACGACCTGG 61.411 66.667 0.14 0.00 0.00 4.45
210 211 4.072088 GCCGCAACGAACGACCTG 62.072 66.667 0.14 0.00 0.00 4.00
213 214 3.291167 GAAGGCCGCAACGAACGAC 62.291 63.158 0.00 0.00 0.00 4.34
214 215 3.039588 GAAGGCCGCAACGAACGA 61.040 61.111 0.00 0.00 0.00 3.85
215 216 4.084888 GGAAGGCCGCAACGAACG 62.085 66.667 0.00 0.00 0.00 3.95
216 217 3.733960 GGGAAGGCCGCAACGAAC 61.734 66.667 0.00 0.00 33.83 3.95
217 218 2.969300 AAAGGGAAGGCCGCAACGAA 62.969 55.000 0.00 0.00 33.83 3.85
218 219 3.485346 AAAGGGAAGGCCGCAACGA 62.485 57.895 0.00 0.00 33.83 3.85
219 220 2.983592 AAAGGGAAGGCCGCAACG 60.984 61.111 0.00 0.00 33.83 4.10
220 221 1.901464 TCAAAGGGAAGGCCGCAAC 60.901 57.895 0.00 0.00 33.83 4.17
221 222 1.901464 GTCAAAGGGAAGGCCGCAA 60.901 57.895 0.00 0.00 33.83 4.85
222 223 2.282180 GTCAAAGGGAAGGCCGCA 60.282 61.111 0.00 0.00 33.83 5.69
223 224 3.431725 CGTCAAAGGGAAGGCCGC 61.432 66.667 0.00 0.00 33.83 6.53
224 225 2.746277 CCGTCAAAGGGAAGGCCG 60.746 66.667 0.00 0.00 38.35 6.13
228 229 3.396260 TTACAGACCGTCAAAGGGAAG 57.604 47.619 0.40 0.00 35.02 3.46
229 230 3.842007 TTTACAGACCGTCAAAGGGAA 57.158 42.857 0.40 0.00 35.02 3.97
230 231 3.842007 TTTTACAGACCGTCAAAGGGA 57.158 42.857 0.40 0.00 35.02 4.20
231 232 3.004002 GGTTTTTACAGACCGTCAAAGGG 59.996 47.826 0.40 0.00 35.02 3.95
232 233 3.628487 TGGTTTTTACAGACCGTCAAAGG 59.372 43.478 0.40 0.00 38.81 3.11
233 234 4.334481 ACTGGTTTTTACAGACCGTCAAAG 59.666 41.667 0.40 0.00 38.81 2.77
234 235 4.263435 ACTGGTTTTTACAGACCGTCAAA 58.737 39.130 0.40 0.00 38.81 2.69
235 236 3.876341 ACTGGTTTTTACAGACCGTCAA 58.124 40.909 0.40 0.00 38.81 3.18
236 237 3.547054 ACTGGTTTTTACAGACCGTCA 57.453 42.857 0.40 0.00 38.81 4.35
237 238 3.624410 ACAACTGGTTTTTACAGACCGTC 59.376 43.478 0.00 0.00 38.81 4.79
238 239 3.613030 ACAACTGGTTTTTACAGACCGT 58.387 40.909 0.00 0.00 38.81 4.83
239 240 4.625972 AACAACTGGTTTTTACAGACCG 57.374 40.909 0.00 0.00 35.82 4.79
240 241 5.504392 CGTAACAACTGGTTTTTACAGACC 58.496 41.667 17.12 0.00 40.96 3.85
241 242 5.065090 ACCGTAACAACTGGTTTTTACAGAC 59.935 40.000 17.12 0.62 40.96 3.51
242 243 5.064962 CACCGTAACAACTGGTTTTTACAGA 59.935 40.000 17.12 0.00 40.96 3.41
243 244 5.267776 CACCGTAACAACTGGTTTTTACAG 58.732 41.667 17.12 11.28 40.96 2.74
244 245 4.438472 GCACCGTAACAACTGGTTTTTACA 60.438 41.667 17.12 0.00 40.96 2.41
245 246 4.037021 GCACCGTAACAACTGGTTTTTAC 58.963 43.478 10.63 10.63 40.96 2.01
246 247 3.242673 CGCACCGTAACAACTGGTTTTTA 60.243 43.478 0.00 0.00 40.96 1.52
247 248 2.478200 CGCACCGTAACAACTGGTTTTT 60.478 45.455 0.00 0.00 40.96 1.94
248 249 1.064357 CGCACCGTAACAACTGGTTTT 59.936 47.619 0.00 0.00 40.96 2.43
249 250 0.658897 CGCACCGTAACAACTGGTTT 59.341 50.000 0.00 0.00 40.96 3.27
250 251 0.179078 TCGCACCGTAACAACTGGTT 60.179 50.000 0.00 0.00 43.62 3.67
251 252 0.179078 TTCGCACCGTAACAACTGGT 60.179 50.000 0.00 0.00 36.10 4.00
252 253 0.511221 CTTCGCACCGTAACAACTGG 59.489 55.000 0.00 0.00 0.00 4.00
253 254 0.511221 CCTTCGCACCGTAACAACTG 59.489 55.000 0.00 0.00 0.00 3.16
254 255 0.390124 TCCTTCGCACCGTAACAACT 59.610 50.000 0.00 0.00 0.00 3.16
255 256 1.435577 ATCCTTCGCACCGTAACAAC 58.564 50.000 0.00 0.00 0.00 3.32
256 257 1.801771 CAATCCTTCGCACCGTAACAA 59.198 47.619 0.00 0.00 0.00 2.83
257 258 1.434555 CAATCCTTCGCACCGTAACA 58.565 50.000 0.00 0.00 0.00 2.41
258 259 0.096454 GCAATCCTTCGCACCGTAAC 59.904 55.000 0.00 0.00 0.00 2.50
259 260 0.320858 TGCAATCCTTCGCACCGTAA 60.321 50.000 0.00 0.00 31.95 3.18
260 261 1.293818 TGCAATCCTTCGCACCGTA 59.706 52.632 0.00 0.00 31.95 4.02
261 262 2.031919 TGCAATCCTTCGCACCGT 59.968 55.556 0.00 0.00 31.95 4.83
265 266 0.821301 TGTTGGTGCAATCCTTCGCA 60.821 50.000 0.00 0.00 35.30 5.10
266 267 0.109597 CTGTTGGTGCAATCCTTCGC 60.110 55.000 0.00 0.00 0.00 4.70
267 268 0.109597 GCTGTTGGTGCAATCCTTCG 60.110 55.000 0.00 0.00 0.00 3.79
268 269 0.244721 GGCTGTTGGTGCAATCCTTC 59.755 55.000 0.00 0.00 0.00 3.46
269 270 1.187567 GGGCTGTTGGTGCAATCCTT 61.188 55.000 0.00 0.00 0.00 3.36
270 271 1.607467 GGGCTGTTGGTGCAATCCT 60.607 57.895 0.00 0.00 0.00 3.24
271 272 1.880819 CTGGGCTGTTGGTGCAATCC 61.881 60.000 0.00 0.00 0.00 3.01
272 273 1.181098 ACTGGGCTGTTGGTGCAATC 61.181 55.000 0.00 0.00 0.00 2.67
273 274 0.760189 AACTGGGCTGTTGGTGCAAT 60.760 50.000 0.00 0.00 0.00 3.56
274 275 1.381056 AACTGGGCTGTTGGTGCAA 60.381 52.632 0.00 0.00 0.00 4.08
275 276 2.126596 CAACTGGGCTGTTGGTGCA 61.127 57.895 13.34 0.00 42.39 4.57
276 277 2.730094 CAACTGGGCTGTTGGTGC 59.270 61.111 13.34 0.00 42.39 5.01
277 278 1.674764 TTGCAACTGGGCTGTTGGTG 61.675 55.000 19.42 3.94 45.19 4.17
278 279 0.975040 TTTGCAACTGGGCTGTTGGT 60.975 50.000 19.42 0.00 45.19 3.67
279 280 0.393820 ATTTGCAACTGGGCTGTTGG 59.606 50.000 19.42 7.21 45.19 3.77
281 282 1.708341 AGATTTGCAACTGGGCTGTT 58.292 45.000 0.00 0.00 34.04 3.16
282 283 2.040278 TCTAGATTTGCAACTGGGCTGT 59.960 45.455 0.00 0.00 34.04 4.40
283 284 2.421424 GTCTAGATTTGCAACTGGGCTG 59.579 50.000 0.00 0.00 34.04 4.85
284 285 2.307098 AGTCTAGATTTGCAACTGGGCT 59.693 45.455 0.00 0.00 34.04 5.19
285 286 2.716217 AGTCTAGATTTGCAACTGGGC 58.284 47.619 0.00 0.00 0.00 5.36
286 287 7.055667 TCTATAGTCTAGATTTGCAACTGGG 57.944 40.000 0.00 0.00 0.00 4.45
287 288 8.417106 TCTTCTATAGTCTAGATTTGCAACTGG 58.583 37.037 0.00 0.00 0.00 4.00
288 289 9.462174 CTCTTCTATAGTCTAGATTTGCAACTG 57.538 37.037 0.00 0.00 0.00 3.16
289 290 8.637986 CCTCTTCTATAGTCTAGATTTGCAACT 58.362 37.037 0.00 0.00 0.00 3.16
290 291 8.417884 ACCTCTTCTATAGTCTAGATTTGCAAC 58.582 37.037 0.00 0.00 0.00 4.17
291 292 8.540507 ACCTCTTCTATAGTCTAGATTTGCAA 57.459 34.615 0.00 0.00 0.00 4.08
292 293 8.417106 CAACCTCTTCTATAGTCTAGATTTGCA 58.583 37.037 0.00 0.00 0.00 4.08
293 294 7.383843 GCAACCTCTTCTATAGTCTAGATTTGC 59.616 40.741 18.82 18.82 32.83 3.68
294 295 8.637986 AGCAACCTCTTCTATAGTCTAGATTTG 58.362 37.037 0.00 8.61 0.00 2.32
295 296 8.776061 AGCAACCTCTTCTATAGTCTAGATTT 57.224 34.615 0.00 0.00 0.00 2.17
296 297 7.450323 GGAGCAACCTCTTCTATAGTCTAGATT 59.550 40.741 0.00 0.00 38.21 2.40
297 298 6.946009 GGAGCAACCTCTTCTATAGTCTAGAT 59.054 42.308 0.00 0.00 38.21 1.98
298 299 6.300703 GGAGCAACCTCTTCTATAGTCTAGA 58.699 44.000 0.00 0.00 38.21 2.43
299 300 5.475564 GGGAGCAACCTCTTCTATAGTCTAG 59.524 48.000 0.00 0.00 38.21 2.43
300 301 5.386924 GGGAGCAACCTCTTCTATAGTCTA 58.613 45.833 0.00 0.00 38.21 2.59
301 302 4.219919 GGGAGCAACCTCTTCTATAGTCT 58.780 47.826 0.00 0.00 38.21 3.24
302 303 3.322541 GGGGAGCAACCTCTTCTATAGTC 59.677 52.174 0.00 0.00 38.21 2.59
303 304 3.310193 GGGGAGCAACCTCTTCTATAGT 58.690 50.000 0.00 0.00 38.21 2.12
304 305 2.297597 CGGGGAGCAACCTCTTCTATAG 59.702 54.545 0.00 0.00 36.90 1.31
305 306 2.091499 TCGGGGAGCAACCTCTTCTATA 60.091 50.000 0.00 0.00 36.90 1.31
306 307 1.123928 CGGGGAGCAACCTCTTCTAT 58.876 55.000 0.00 0.00 36.90 1.98
307 308 0.040646 TCGGGGAGCAACCTCTTCTA 59.959 55.000 0.00 0.00 36.90 2.10
308 309 0.618968 ATCGGGGAGCAACCTCTTCT 60.619 55.000 0.00 0.00 36.90 2.85
309 310 0.253327 AATCGGGGAGCAACCTCTTC 59.747 55.000 0.00 0.00 36.90 2.87
310 311 0.253327 GAATCGGGGAGCAACCTCTT 59.747 55.000 0.00 0.00 36.90 2.85
311 312 1.908483 GAATCGGGGAGCAACCTCT 59.092 57.895 0.00 0.00 36.90 3.69
312 313 1.521681 CGAATCGGGGAGCAACCTC 60.522 63.158 0.00 0.00 38.98 3.85
313 314 2.240162 GACGAATCGGGGAGCAACCT 62.240 60.000 7.80 0.00 38.98 3.50
314 315 1.814169 GACGAATCGGGGAGCAACC 60.814 63.158 7.80 0.00 38.08 3.77
315 316 1.814169 GGACGAATCGGGGAGCAAC 60.814 63.158 7.80 0.00 0.00 4.17
316 317 2.582436 GGACGAATCGGGGAGCAA 59.418 61.111 7.80 0.00 0.00 3.91
317 318 3.833645 CGGACGAATCGGGGAGCA 61.834 66.667 7.80 0.00 0.00 4.26
318 319 2.750715 GATCGGACGAATCGGGGAGC 62.751 65.000 7.80 0.00 0.00 4.70
319 320 1.286260 GATCGGACGAATCGGGGAG 59.714 63.158 7.80 0.00 0.00 4.30
320 321 1.038681 TTGATCGGACGAATCGGGGA 61.039 55.000 7.80 1.12 0.00 4.81
321 322 0.179094 TTTGATCGGACGAATCGGGG 60.179 55.000 7.80 0.00 0.00 5.73
322 323 1.647346 TTTTGATCGGACGAATCGGG 58.353 50.000 7.80 0.00 0.00 5.14
323 324 2.863740 TGATTTTGATCGGACGAATCGG 59.136 45.455 7.80 0.00 0.00 4.18
324 325 3.796717 TCTGATTTTGATCGGACGAATCG 59.203 43.478 0.00 0.00 31.45 3.34
325 326 5.107298 GGATCTGATTTTGATCGGACGAATC 60.107 44.000 0.00 0.00 40.71 2.52
326 327 4.752101 GGATCTGATTTTGATCGGACGAAT 59.248 41.667 0.00 0.00 40.71 3.34
327 328 4.119862 GGATCTGATTTTGATCGGACGAA 58.880 43.478 0.00 0.00 40.71 3.85
328 329 3.132111 TGGATCTGATTTTGATCGGACGA 59.868 43.478 0.00 0.00 40.71 4.20
329 330 3.457234 TGGATCTGATTTTGATCGGACG 58.543 45.455 0.33 0.00 40.71 4.79
330 331 4.260375 CGTTGGATCTGATTTTGATCGGAC 60.260 45.833 0.33 0.00 40.71 4.79
331 332 3.871006 CGTTGGATCTGATTTTGATCGGA 59.129 43.478 0.81 0.81 40.71 4.55
332 333 3.546815 GCGTTGGATCTGATTTTGATCGG 60.547 47.826 0.00 0.00 40.71 4.18
333 334 3.546815 GGCGTTGGATCTGATTTTGATCG 60.547 47.826 0.00 0.00 40.71 3.69
334 335 3.243201 GGGCGTTGGATCTGATTTTGATC 60.243 47.826 0.00 0.00 39.49 2.92
335 336 2.689983 GGGCGTTGGATCTGATTTTGAT 59.310 45.455 0.00 0.00 0.00 2.57
336 337 2.091541 GGGCGTTGGATCTGATTTTGA 58.908 47.619 0.00 0.00 0.00 2.69
337 338 1.818060 TGGGCGTTGGATCTGATTTTG 59.182 47.619 0.00 0.00 0.00 2.44
338 339 1.818674 GTGGGCGTTGGATCTGATTTT 59.181 47.619 0.00 0.00 0.00 1.82
339 340 1.463674 GTGGGCGTTGGATCTGATTT 58.536 50.000 0.00 0.00 0.00 2.17
340 341 0.744414 CGTGGGCGTTGGATCTGATT 60.744 55.000 0.00 0.00 0.00 2.57
341 342 1.153369 CGTGGGCGTTGGATCTGAT 60.153 57.895 0.00 0.00 0.00 2.90
342 343 2.264480 CGTGGGCGTTGGATCTGA 59.736 61.111 0.00 0.00 0.00 3.27
343 344 2.819595 CCGTGGGCGTTGGATCTG 60.820 66.667 0.00 0.00 36.15 2.90
344 345 3.000819 TCCGTGGGCGTTGGATCT 61.001 61.111 0.00 0.00 36.15 2.75
345 346 2.511600 CTCCGTGGGCGTTGGATC 60.512 66.667 0.00 0.00 36.15 3.36
346 347 4.096003 CCTCCGTGGGCGTTGGAT 62.096 66.667 0.00 0.00 36.15 3.41
365 366 4.400109 TCTCTGTGCGCGTCGACC 62.400 66.667 10.58 1.77 0.00 4.79
366 367 2.585170 ATCTCTCTGTGCGCGTCGAC 62.585 60.000 8.43 5.18 0.00 4.20
367 368 1.087771 TATCTCTCTGTGCGCGTCGA 61.088 55.000 8.43 0.00 0.00 4.20
368 369 0.926174 GTATCTCTCTGTGCGCGTCG 60.926 60.000 8.43 0.00 0.00 5.12
369 370 0.926174 CGTATCTCTCTGTGCGCGTC 60.926 60.000 8.43 0.00 0.00 5.19
370 371 1.062685 CGTATCTCTCTGTGCGCGT 59.937 57.895 8.43 0.00 0.00 6.01
371 372 1.655654 CCGTATCTCTCTGTGCGCG 60.656 63.158 0.00 0.00 0.00 6.86
372 373 0.867753 CACCGTATCTCTCTGTGCGC 60.868 60.000 0.00 0.00 0.00 6.09
373 374 0.248661 CCACCGTATCTCTCTGTGCG 60.249 60.000 0.00 0.00 0.00 5.34
374 375 0.103208 CCCACCGTATCTCTCTGTGC 59.897 60.000 0.00 0.00 0.00 4.57
375 376 1.135139 CACCCACCGTATCTCTCTGTG 59.865 57.143 0.00 0.00 0.00 3.66
376 377 1.005569 TCACCCACCGTATCTCTCTGT 59.994 52.381 0.00 0.00 0.00 3.41
377 378 1.678627 CTCACCCACCGTATCTCTCTG 59.321 57.143 0.00 0.00 0.00 3.35
378 379 2.024825 GCTCACCCACCGTATCTCTCT 61.025 57.143 0.00 0.00 0.00 3.10
379 380 0.386113 GCTCACCCACCGTATCTCTC 59.614 60.000 0.00 0.00 0.00 3.20
380 381 1.043673 GGCTCACCCACCGTATCTCT 61.044 60.000 0.00 0.00 0.00 3.10
381 382 1.327690 TGGCTCACCCACCGTATCTC 61.328 60.000 0.00 0.00 39.18 2.75
382 383 1.305802 TGGCTCACCCACCGTATCT 60.306 57.895 0.00 0.00 39.18 1.98
383 384 3.305314 TGGCTCACCCACCGTATC 58.695 61.111 0.00 0.00 39.18 2.24
391 392 2.032680 TTAAACGCTATGGCTCACCC 57.967 50.000 0.00 0.00 36.09 4.61
392 393 3.202906 TGATTAAACGCTATGGCTCACC 58.797 45.455 0.00 0.00 36.09 4.02
393 394 4.875544 TTGATTAAACGCTATGGCTCAC 57.124 40.909 0.00 0.00 36.09 3.51
394 395 4.941263 ACTTTGATTAAACGCTATGGCTCA 59.059 37.500 0.00 0.00 36.09 4.26
395 396 5.064707 TCACTTTGATTAAACGCTATGGCTC 59.935 40.000 0.00 0.00 36.09 4.70
396 397 4.941263 TCACTTTGATTAAACGCTATGGCT 59.059 37.500 0.00 0.00 36.09 4.75
397 398 5.064707 TCTCACTTTGATTAAACGCTATGGC 59.935 40.000 0.00 0.00 0.00 4.40
398 399 6.662414 TCTCACTTTGATTAAACGCTATGG 57.338 37.500 0.00 0.00 0.00 2.74
399 400 8.443160 TCTTTCTCACTTTGATTAAACGCTATG 58.557 33.333 0.00 0.00 0.00 2.23
400 401 8.547967 TCTTTCTCACTTTGATTAAACGCTAT 57.452 30.769 0.00 0.00 0.00 2.97
401 402 7.956420 TCTTTCTCACTTTGATTAAACGCTA 57.044 32.000 0.00 0.00 0.00 4.26
402 403 6.861065 TCTTTCTCACTTTGATTAAACGCT 57.139 33.333 0.00 0.00 0.00 5.07
403 404 8.507470 AATTCTTTCTCACTTTGATTAAACGC 57.493 30.769 0.00 0.00 0.00 4.84
414 415 9.323985 GCATCTCTATGTAATTCTTTCTCACTT 57.676 33.333 0.00 0.00 35.38 3.16
415 416 8.481314 TGCATCTCTATGTAATTCTTTCTCACT 58.519 33.333 0.00 0.00 35.38 3.41
416 417 8.654230 TGCATCTCTATGTAATTCTTTCTCAC 57.346 34.615 0.00 0.00 35.38 3.51
417 418 9.322773 CTTGCATCTCTATGTAATTCTTTCTCA 57.677 33.333 0.00 0.00 37.13 3.27
418 419 9.323985 ACTTGCATCTCTATGTAATTCTTTCTC 57.676 33.333 0.00 0.00 37.13 2.87
419 420 9.323985 GACTTGCATCTCTATGTAATTCTTTCT 57.676 33.333 0.00 0.00 37.13 2.52
420 421 9.323985 AGACTTGCATCTCTATGTAATTCTTTC 57.676 33.333 0.00 0.00 41.60 2.62
421 422 9.107177 CAGACTTGCATCTCTATGTAATTCTTT 57.893 33.333 6.41 0.00 41.60 2.52
422 423 8.481314 TCAGACTTGCATCTCTATGTAATTCTT 58.519 33.333 6.41 0.00 41.60 2.52
423 424 8.016301 TCAGACTTGCATCTCTATGTAATTCT 57.984 34.615 0.00 4.15 43.56 2.40
424 425 8.710551 CATCAGACTTGCATCTCTATGTAATTC 58.289 37.037 0.00 0.00 37.13 2.17
425 426 8.427276 TCATCAGACTTGCATCTCTATGTAATT 58.573 33.333 0.00 0.00 37.13 1.40
426 427 7.960262 TCATCAGACTTGCATCTCTATGTAAT 58.040 34.615 0.00 0.00 37.13 1.89
427 428 7.352079 TCATCAGACTTGCATCTCTATGTAA 57.648 36.000 0.00 0.00 35.62 2.41
428 429 6.966534 TCATCAGACTTGCATCTCTATGTA 57.033 37.500 0.00 0.00 35.38 2.29
429 430 5.866159 TCATCAGACTTGCATCTCTATGT 57.134 39.130 0.00 0.00 35.38 2.29
430 431 6.018098 GGTTTCATCAGACTTGCATCTCTATG 60.018 42.308 0.00 0.00 36.09 2.23
431 432 6.054295 GGTTTCATCAGACTTGCATCTCTAT 58.946 40.000 0.00 0.00 0.00 1.98
432 433 5.046376 TGGTTTCATCAGACTTGCATCTCTA 60.046 40.000 0.00 0.00 0.00 2.43
433 434 4.260170 GGTTTCATCAGACTTGCATCTCT 58.740 43.478 0.00 0.00 0.00 3.10
434 435 4.005650 TGGTTTCATCAGACTTGCATCTC 58.994 43.478 0.00 0.00 0.00 2.75
435 436 4.025040 TGGTTTCATCAGACTTGCATCT 57.975 40.909 0.00 0.00 0.00 2.90
436 437 4.771590 TTGGTTTCATCAGACTTGCATC 57.228 40.909 0.00 0.00 0.00 3.91
437 438 5.534207 TTTTGGTTTCATCAGACTTGCAT 57.466 34.783 0.00 0.00 0.00 3.96
438 439 4.998671 TTTTGGTTTCATCAGACTTGCA 57.001 36.364 0.00 0.00 0.00 4.08
457 458 7.619512 AATAGGGATCGGAGAGAGTATTTTT 57.380 36.000 0.00 0.00 43.63 1.94
458 459 8.722622 TTAATAGGGATCGGAGAGAGTATTTT 57.277 34.615 0.00 0.00 43.63 1.82
459 460 7.951245 ACTTAATAGGGATCGGAGAGAGTATTT 59.049 37.037 0.00 0.00 43.63 1.40
460 461 7.394923 CACTTAATAGGGATCGGAGAGAGTATT 59.605 40.741 0.00 0.00 43.63 1.89
461 462 6.887545 CACTTAATAGGGATCGGAGAGAGTAT 59.112 42.308 0.00 0.00 43.63 2.12
462 463 6.183361 ACACTTAATAGGGATCGGAGAGAGTA 60.183 42.308 0.00 0.00 43.63 2.59
463 464 5.074115 CACTTAATAGGGATCGGAGAGAGT 58.926 45.833 0.00 0.00 43.63 3.24
464 465 5.074115 ACACTTAATAGGGATCGGAGAGAG 58.926 45.833 0.00 0.00 43.63 3.20
465 466 5.063017 ACACTTAATAGGGATCGGAGAGA 57.937 43.478 0.00 0.00 43.63 3.10
466 467 4.827835 TGACACTTAATAGGGATCGGAGAG 59.172 45.833 0.00 0.00 43.63 3.20
467 468 4.583489 GTGACACTTAATAGGGATCGGAGA 59.417 45.833 0.00 0.00 45.75 3.71
468 469 4.585162 AGTGACACTTAATAGGGATCGGAG 59.415 45.833 1.07 0.00 0.00 4.63
469 470 4.341235 CAGTGACACTTAATAGGGATCGGA 59.659 45.833 5.04 0.00 0.00 4.55
470 471 4.341235 TCAGTGACACTTAATAGGGATCGG 59.659 45.833 5.04 0.00 0.00 4.18
471 472 5.515797 TCAGTGACACTTAATAGGGATCG 57.484 43.478 5.04 0.00 0.00 3.69
472 473 9.482627 CTAAATCAGTGACACTTAATAGGGATC 57.517 37.037 5.04 0.00 0.00 3.36
473 474 8.993424 ACTAAATCAGTGACACTTAATAGGGAT 58.007 33.333 5.04 0.92 35.62 3.85
474 475 8.375493 ACTAAATCAGTGACACTTAATAGGGA 57.625 34.615 5.04 0.00 35.62 4.20
475 476 9.751542 CTACTAAATCAGTGACACTTAATAGGG 57.248 37.037 5.04 0.00 38.24 3.53
483 484 9.561069 ACAAAATTCTACTAAATCAGTGACACT 57.439 29.630 1.07 1.07 38.24 3.55
503 504 9.979578 TCAAGTGTTGCTGATTTATTACAAAAT 57.020 25.926 0.00 0.00 0.00 1.82
504 505 9.462174 CTCAAGTGTTGCTGATTTATTACAAAA 57.538 29.630 0.00 0.00 0.00 2.44
505 506 8.081633 CCTCAAGTGTTGCTGATTTATTACAAA 58.918 33.333 0.00 0.00 0.00 2.83
506 507 7.309133 CCCTCAAGTGTTGCTGATTTATTACAA 60.309 37.037 0.00 0.00 0.00 2.41
507 508 6.150976 CCCTCAAGTGTTGCTGATTTATTACA 59.849 38.462 0.00 0.00 0.00 2.41
508 509 6.374333 TCCCTCAAGTGTTGCTGATTTATTAC 59.626 38.462 0.00 0.00 0.00 1.89
509 510 6.480763 TCCCTCAAGTGTTGCTGATTTATTA 58.519 36.000 0.00 0.00 0.00 0.98
510 511 5.324409 TCCCTCAAGTGTTGCTGATTTATT 58.676 37.500 0.00 0.00 0.00 1.40
511 512 4.922206 TCCCTCAAGTGTTGCTGATTTAT 58.078 39.130 0.00 0.00 0.00 1.40
512 513 4.202461 ACTCCCTCAAGTGTTGCTGATTTA 60.202 41.667 0.00 0.00 0.00 1.40
513 514 3.152341 CTCCCTCAAGTGTTGCTGATTT 58.848 45.455 0.00 0.00 0.00 2.17
514 515 2.107204 ACTCCCTCAAGTGTTGCTGATT 59.893 45.455 0.00 0.00 0.00 2.57
515 516 1.701847 ACTCCCTCAAGTGTTGCTGAT 59.298 47.619 0.00 0.00 0.00 2.90
516 517 1.131638 ACTCCCTCAAGTGTTGCTGA 58.868 50.000 0.00 0.00 0.00 4.26
517 518 2.839486 TACTCCCTCAAGTGTTGCTG 57.161 50.000 0.00 0.00 0.00 4.41
518 519 2.639839 ACATACTCCCTCAAGTGTTGCT 59.360 45.455 0.00 0.00 0.00 3.91
519 520 3.059352 ACATACTCCCTCAAGTGTTGC 57.941 47.619 0.00 0.00 0.00 4.17
520 521 7.492669 CAGTATTACATACTCCCTCAAGTGTTG 59.507 40.741 0.00 0.00 43.93 3.33
521 522 7.399191 TCAGTATTACATACTCCCTCAAGTGTT 59.601 37.037 0.00 0.00 43.93 3.32
522 523 6.895756 TCAGTATTACATACTCCCTCAAGTGT 59.104 38.462 0.00 0.00 43.93 3.55
523 524 7.348080 TCAGTATTACATACTCCCTCAAGTG 57.652 40.000 0.00 0.00 43.93 3.16
524 525 7.620094 ACTTCAGTATTACATACTCCCTCAAGT 59.380 37.037 0.00 0.00 43.93 3.16
525 526 8.012957 ACTTCAGTATTACATACTCCCTCAAG 57.987 38.462 0.00 0.00 43.93 3.02
526 527 7.973048 ACTTCAGTATTACATACTCCCTCAA 57.027 36.000 0.00 0.00 43.93 3.02
527 528 9.656323 AATACTTCAGTATTACATACTCCCTCA 57.344 33.333 10.00 0.00 46.15 3.86
528 529 9.915629 CAATACTTCAGTATTACATACTCCCTC 57.084 37.037 11.13 0.00 46.23 4.30
579 580 1.596895 ATGTGGCATGTGCAATGCGA 61.597 50.000 20.23 16.37 45.41 5.10
624 633 9.565213 GACATGTGTTAAACTACGTACTAGAAT 57.435 33.333 1.15 0.00 0.00 2.40
632 641 6.665474 TTTGTGACATGTGTTAAACTACGT 57.335 33.333 1.15 0.00 0.00 3.57
633 642 7.956508 TTTTTGTGACATGTGTTAAACTACG 57.043 32.000 1.15 0.00 0.00 3.51
656 665 2.637165 ACCACTGGATCCTCTCCTTTT 58.363 47.619 14.23 0.00 45.21 2.27
660 669 1.763545 GGTAACCACTGGATCCTCTCC 59.236 57.143 14.23 0.96 45.19 3.71
713 722 5.132897 TGGTGGCTGTTATTTGAATTGAC 57.867 39.130 0.00 0.00 0.00 3.18
772 781 6.045072 TCTTAATTTCGCTCCTGTTCCTAA 57.955 37.500 0.00 0.00 0.00 2.69
916 926 5.422331 CCTAGCTAGCTAAGGGTATTATGCA 59.578 44.000 24.20 0.00 0.00 3.96
1983 2177 1.892819 CGCTGGAGCAGAAGGAGGAA 61.893 60.000 0.00 0.00 42.21 3.36
2112 2405 3.349006 CACCGCTGCAGCTCGTTT 61.349 61.111 34.22 12.32 39.32 3.60
2187 2483 1.160329 TCTCGCGCTCGATCATCTGA 61.160 55.000 5.56 0.00 44.56 3.27
2457 2777 2.221299 GGTGTGGTCCAGGTAGCCA 61.221 63.158 0.00 0.00 0.00 4.75
2934 3254 1.682684 CCCCGTCTGCTGGTACTCT 60.683 63.158 0.00 0.00 0.00 3.24
3372 3692 0.879765 AGATTCGTTGAGGTCGTCGT 59.120 50.000 0.00 0.00 0.00 4.34
3373 3693 1.536149 GAGATTCGTTGAGGTCGTCG 58.464 55.000 0.00 0.00 0.00 5.12
3374 3694 1.536149 CGAGATTCGTTGAGGTCGTC 58.464 55.000 0.00 0.00 34.72 4.20
3383 3703 2.778679 GCGCTTGCGAGATTCGTT 59.221 55.556 19.55 0.00 42.81 3.85
3399 3719 2.031163 ATCCAGATTAGCCGGCGC 59.969 61.111 23.20 12.20 0.00 6.53
3586 3920 0.448990 TCTTGCTGCATGTTCGATGC 59.551 50.000 14.21 2.50 44.76 3.91
3617 3951 3.854286 AAACTCACGATCAAACACGAC 57.146 42.857 0.00 0.00 0.00 4.34
3728 4063 2.675317 GCGACAGCTTGTACAAGGAGAT 60.675 50.000 31.42 7.83 41.01 2.75
3778 4113 3.045142 CCACGTCTGGTACACGGT 58.955 61.111 8.80 0.00 41.73 4.83
3826 4161 2.224426 TGCTCTTAGCGAACCTTCCAAA 60.224 45.455 0.00 0.00 46.26 3.28
3827 4162 1.346395 TGCTCTTAGCGAACCTTCCAA 59.654 47.619 0.00 0.00 46.26 3.53
3828 4163 0.973632 TGCTCTTAGCGAACCTTCCA 59.026 50.000 0.00 0.00 46.26 3.53
3829 4164 2.159028 AGATGCTCTTAGCGAACCTTCC 60.159 50.000 0.00 0.00 46.26 3.46
3830 4165 3.120041 GAGATGCTCTTAGCGAACCTTC 58.880 50.000 0.00 0.00 46.26 3.46
3831 4166 2.159028 GGAGATGCTCTTAGCGAACCTT 60.159 50.000 0.00 0.00 46.26 3.50
3832 4167 1.410882 GGAGATGCTCTTAGCGAACCT 59.589 52.381 0.00 0.00 46.26 3.50
3833 4168 1.137086 TGGAGATGCTCTTAGCGAACC 59.863 52.381 0.00 0.00 46.26 3.62
3834 4169 2.586258 TGGAGATGCTCTTAGCGAAC 57.414 50.000 0.00 0.00 46.26 3.95
3835 4170 2.233676 TGTTGGAGATGCTCTTAGCGAA 59.766 45.455 0.00 0.00 46.26 4.70
3894 4229 2.391724 AAACCTGACGATGGGCACGT 62.392 55.000 0.00 0.00 46.58 4.49
3937 4272 0.098025 GCATTTTAGCGCGGTTGCTA 59.902 50.000 19.09 0.51 45.14 3.49
3942 4277 2.485122 GCTGCATTTTAGCGCGGT 59.515 55.556 17.70 17.70 36.85 5.68
4035 4398 2.153627 GCGTTGATGTGTGAAATTGTGC 59.846 45.455 0.00 0.00 0.00 4.57
4037 4400 3.706802 TGCGTTGATGTGTGAAATTGT 57.293 38.095 0.00 0.00 0.00 2.71
4038 4406 5.189625 GTTTTGCGTTGATGTGTGAAATTG 58.810 37.500 0.00 0.00 0.00 2.32
4078 4446 5.471556 TGGCTGAATGATGTTTGTGATTT 57.528 34.783 0.00 0.00 0.00 2.17
4097 4468 2.406452 CTTGTGGGCACGAACTTGGC 62.406 60.000 0.00 0.00 41.31 4.52
4119 4510 7.845037 TGAATTATGTTGTGGGCATGAATTTA 58.155 30.769 0.00 0.00 0.00 1.40
4120 4511 6.709281 TGAATTATGTTGTGGGCATGAATTT 58.291 32.000 0.00 0.00 0.00 1.82
4121 4512 6.297080 TGAATTATGTTGTGGGCATGAATT 57.703 33.333 0.00 0.00 0.00 2.17
4122 4513 5.936187 TGAATTATGTTGTGGGCATGAAT 57.064 34.783 0.00 0.00 0.00 2.57
4123 4514 5.477510 GTTGAATTATGTTGTGGGCATGAA 58.522 37.500 0.00 0.00 0.00 2.57
4124 4515 4.081752 GGTTGAATTATGTTGTGGGCATGA 60.082 41.667 0.00 0.00 0.00 3.07
4179 4593 3.347958 TGATTGTTGTGCCTTTCGTTC 57.652 42.857 0.00 0.00 0.00 3.95
4245 4659 0.448593 CGTCTTCGGAGGAGTCAGAC 59.551 60.000 0.00 0.00 32.16 3.51
4291 4707 0.464036 GGTGATGAGGATACGGCACA 59.536 55.000 0.00 0.00 46.39 4.57
4293 4709 0.464036 GTGGTGATGAGGATACGGCA 59.536 55.000 0.00 0.00 46.39 5.69
4307 4723 1.284982 CTTCCGAGCTTCACGTGGTG 61.285 60.000 17.00 9.92 34.45 4.17
4308 4724 1.006102 CTTCCGAGCTTCACGTGGT 60.006 57.895 17.00 0.00 0.00 4.16
4309 4725 1.738099 CCTTCCGAGCTTCACGTGG 60.738 63.158 17.00 0.92 0.00 4.94
4349 4765 2.032178 GTGCCACCTTCGCATAAAGATC 59.968 50.000 0.00 0.00 38.76 2.75
4355 4771 4.294523 GTGTGCCACCTTCGCATA 57.705 55.556 0.00 0.00 38.76 3.14
4402 4819 3.484886 GCATGAGTTTTGCGTCTCTCATC 60.485 47.826 0.00 4.54 43.07 2.92
4433 4868 1.003839 GCTTGGACGACATGGGTGA 60.004 57.895 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.