Multiple sequence alignment - TraesCS7B01G058700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G058700 chr7B 100.000 2791 0 0 1 2791 61272372 61275162 0.000000e+00 5155.0
1 TraesCS7B01G058700 chr7B 90.928 959 61 14 1330 2280 400625834 400624894 0.000000e+00 1266.0
2 TraesCS7B01G058700 chr7B 86.870 853 89 10 290 1140 400626685 400625854 0.000000e+00 933.0
3 TraesCS7B01G058700 chr7B 79.592 392 61 13 2405 2791 175227451 175227074 2.130000e-66 263.0
4 TraesCS7B01G058700 chr1B 96.750 1477 46 2 287 1762 113801294 113799819 0.000000e+00 2460.0
5 TraesCS7B01G058700 chr1B 90.506 969 71 7 1322 2276 635780473 635781434 0.000000e+00 1260.0
6 TraesCS7B01G058700 chr1B 96.522 460 16 0 1817 2276 113799821 113799362 0.000000e+00 761.0
7 TraesCS7B01G058700 chr1B 85.714 602 73 4 290 888 635779820 635780411 8.490000e-175 623.0
8 TraesCS7B01G058700 chr1B 82.278 316 47 9 2481 2791 288844298 288843987 5.930000e-67 265.0
9 TraesCS7B01G058700 chr1B 79.885 174 24 7 1270 1434 218989255 218989426 1.760000e-22 117.0
10 TraesCS7B01G058700 chr1B 95.833 48 2 0 1093 1140 635780415 635780462 8.290000e-11 78.7
11 TraesCS7B01G058700 chr1B 97.368 38 1 0 1551 1588 635780667 635780704 6.450000e-07 65.8
12 TraesCS7B01G058700 chr2D 90.570 1824 143 16 459 2276 584837569 584835769 0.000000e+00 2388.0
13 TraesCS7B01G058700 chr2D 91.111 315 25 3 2287 2599 480049968 480049655 9.240000e-115 424.0
14 TraesCS7B01G058700 chr6D 87.981 1664 150 25 287 1925 118741331 118742969 0.000000e+00 1919.0
15 TraesCS7B01G058700 chr7A 97.693 997 23 0 287 1283 109760588 109759592 0.000000e+00 1714.0
16 TraesCS7B01G058700 chr7A 98.994 795 6 2 1335 2129 109759588 109758796 0.000000e+00 1423.0
17 TraesCS7B01G058700 chr7A 79.345 397 65 16 2405 2791 684036517 684036128 2.130000e-66 263.0
18 TraesCS7B01G058700 chr3B 95.535 963 40 1 426 1388 582974177 582973218 0.000000e+00 1537.0
19 TraesCS7B01G058700 chr3B 95.776 947 18 2 1331 2277 795282936 795282012 0.000000e+00 1507.0
20 TraesCS7B01G058700 chr3B 94.201 638 21 2 286 923 795283580 795282959 0.000000e+00 959.0
21 TraesCS7B01G058700 chr3B 95.745 235 9 1 330 563 582974409 582974175 7.300000e-101 377.0
22 TraesCS7B01G058700 chr3B 89.085 284 31 0 1 284 177982625 177982342 1.230000e-93 353.0
23 TraesCS7B01G058700 chr5B 90.309 970 68 11 1322 2283 395676569 395675618 0.000000e+00 1247.0
24 TraesCS7B01G058700 chr5B 86.464 857 69 11 311 1140 395677461 395676625 0.000000e+00 896.0
25 TraesCS7B01G058700 chr5B 91.401 314 21 6 2293 2602 385776296 385776607 2.570000e-115 425.0
26 TraesCS7B01G058700 chr5B 88.693 283 30 2 5 286 368659297 368659016 7.400000e-91 344.0
27 TraesCS7B01G058700 chr5B 97.368 38 1 0 1551 1588 395676392 395676355 6.450000e-07 65.8
28 TraesCS7B01G058700 chr5A 85.316 1076 101 24 308 1373 355769875 355770903 0.000000e+00 1059.0
29 TraesCS7B01G058700 chr5A 90.090 333 29 4 2276 2605 287585344 287585675 1.990000e-116 429.0
30 TraesCS7B01G058700 chr5A 87.379 103 11 1 1270 1370 698988187 698988085 1.760000e-22 117.0
31 TraesCS7B01G058700 chr2B 94.336 565 15 3 1720 2282 600997230 600996681 0.000000e+00 850.0
32 TraesCS7B01G058700 chr2B 96.727 275 9 0 286 560 600997497 600997223 2.530000e-125 459.0
33 TraesCS7B01G058700 chr2B 88.542 288 28 4 1 286 232528836 232529120 7.400000e-91 344.0
34 TraesCS7B01G058700 chr2B 87.119 295 31 7 1 292 475033891 475034181 7.450000e-86 327.0
35 TraesCS7B01G058700 chr4B 90.528 644 57 3 1637 2278 493801786 493801145 0.000000e+00 848.0
36 TraesCS7B01G058700 chr4B 84.946 372 45 8 1172 1535 493854264 493853896 1.580000e-97 366.0
37 TraesCS7B01G058700 chr4A 91.617 334 22 6 2276 2605 43670529 43670198 9.110000e-125 457.0
38 TraesCS7B01G058700 chr4A 89.552 335 29 6 2276 2605 380157259 380157592 1.200000e-113 420.0
39 TraesCS7B01G058700 chr4A 88.380 284 33 0 1 284 380156982 380157265 2.660000e-90 342.0
40 TraesCS7B01G058700 chr4A 79.146 398 61 19 2405 2791 578122149 578121763 3.570000e-64 255.0
41 TraesCS7B01G058700 chr7D 91.692 325 19 7 2276 2595 380072682 380073003 7.090000e-121 444.0
42 TraesCS7B01G058700 chr4D 92.013 313 20 4 2287 2597 92329963 92330272 4.270000e-118 435.0
43 TraesCS7B01G058700 chr4D 88.112 286 30 1 1 286 338770214 338769933 1.240000e-88 337.0
44 TraesCS7B01G058700 chr4D 86.517 178 17 2 2101 2278 93394971 93395141 3.670000e-44 189.0
45 TraesCS7B01G058700 chr3D 90.184 326 29 3 2276 2599 124002800 124002476 3.320000e-114 422.0
46 TraesCS7B01G058700 chr3D 88.112 286 33 1 1 286 404532928 404532644 3.440000e-89 339.0
47 TraesCS7B01G058700 chr3D 86.692 263 34 1 2530 2791 359770029 359769767 9.780000e-75 291.0
48 TraesCS7B01G058700 chr3D 93.085 188 13 0 2599 2786 272564547 272564360 2.740000e-70 276.0
49 TraesCS7B01G058700 chr3A 89.820 334 27 6 2276 2605 131616195 131615865 3.320000e-114 422.0
50 TraesCS7B01G058700 chr3A 87.676 284 35 0 1 284 527358324 527358041 5.760000e-87 331.0
51 TraesCS7B01G058700 chr1D 89.964 279 28 0 1 279 403248754 403248476 7.350000e-96 361.0
52 TraesCS7B01G058700 chr1D 92.632 190 14 0 2599 2788 313624678 313624867 9.850000e-70 274.0
53 TraesCS7B01G058700 chr1D 78.827 392 69 13 2405 2788 102603145 102603530 4.610000e-63 252.0
54 TraesCS7B01G058700 chr6A 81.389 360 61 6 2414 2769 119459251 119459608 3.520000e-74 289.0
55 TraesCS7B01G058700 chr5D 90.116 172 16 1 2102 2272 518626108 518625937 3.620000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G058700 chr7B 61272372 61275162 2790 False 5155.000000 5155 100.000000 1 2791 1 chr7B.!!$F1 2790
1 TraesCS7B01G058700 chr7B 400624894 400626685 1791 True 1099.500000 1266 88.899000 290 2280 2 chr7B.!!$R2 1990
2 TraesCS7B01G058700 chr1B 113799362 113801294 1932 True 1610.500000 2460 96.636000 287 2276 2 chr1B.!!$R2 1989
3 TraesCS7B01G058700 chr1B 635779820 635781434 1614 False 506.875000 1260 92.355250 290 2276 4 chr1B.!!$F2 1986
4 TraesCS7B01G058700 chr2D 584835769 584837569 1800 True 2388.000000 2388 90.570000 459 2276 1 chr2D.!!$R2 1817
5 TraesCS7B01G058700 chr6D 118741331 118742969 1638 False 1919.000000 1919 87.981000 287 1925 1 chr6D.!!$F1 1638
6 TraesCS7B01G058700 chr7A 109758796 109760588 1792 True 1568.500000 1714 98.343500 287 2129 2 chr7A.!!$R2 1842
7 TraesCS7B01G058700 chr3B 795282012 795283580 1568 True 1233.000000 1507 94.988500 286 2277 2 chr3B.!!$R3 1991
8 TraesCS7B01G058700 chr3B 582973218 582974409 1191 True 957.000000 1537 95.640000 330 1388 2 chr3B.!!$R2 1058
9 TraesCS7B01G058700 chr5B 395675618 395677461 1843 True 736.266667 1247 91.380333 311 2283 3 chr5B.!!$R2 1972
10 TraesCS7B01G058700 chr5A 355769875 355770903 1028 False 1059.000000 1059 85.316000 308 1373 1 chr5A.!!$F2 1065
11 TraesCS7B01G058700 chr2B 600996681 600997497 816 True 654.500000 850 95.531500 286 2282 2 chr2B.!!$R1 1996
12 TraesCS7B01G058700 chr4B 493801145 493801786 641 True 848.000000 848 90.528000 1637 2278 1 chr4B.!!$R1 641
13 TraesCS7B01G058700 chr4A 380156982 380157592 610 False 381.000000 420 88.966000 1 2605 2 chr4A.!!$F1 2604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.536724 TCACACATCATCGGAGGGTG 59.463 55.0 0.65 0.65 37.92 4.61 F
123 124 1.115930 ATCGAATCCCCCTCCGACAG 61.116 60.0 0.00 0.00 33.69 3.51 F
1045 1256 1.126948 TCACCACTCATCAGCACCCA 61.127 55.0 0.00 0.00 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1045 1256 4.230657 CGACGAACAGAGTTGAAGAAGAT 58.769 43.478 0.00 0.00 0.0 2.40 R
1225 1436 5.104527 TCACAATAGGAAGGATAGTGGGTTG 60.105 44.000 0.00 0.00 0.0 3.77 R
2310 2605 0.034186 GATCATGGGCCCACAAGACA 60.034 55.000 31.51 7.69 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.696992 AGAAGCCATCTAGCTACTAACTATC 57.303 40.000 0.00 0.00 44.11 2.08
64 65 5.581085 GTCCATGGTAAACTACTCACACATC 59.419 44.000 12.58 0.00 0.00 3.06
74 75 0.826715 CTCACACATCATCGGAGGGT 59.173 55.000 0.00 0.00 0.00 4.34
75 76 0.536724 TCACACATCATCGGAGGGTG 59.463 55.000 0.65 0.65 37.92 4.61
81 82 1.274703 ATCATCGGAGGGTGGCAAGT 61.275 55.000 0.00 0.00 0.00 3.16
123 124 1.115930 ATCGAATCCCCCTCCGACAG 61.116 60.000 0.00 0.00 33.69 3.51
130 131 4.135153 CCCTCCGACAGAGTGCCG 62.135 72.222 0.00 0.00 41.47 5.69
161 162 1.210478 CCAGATGGGATCTCGTGGTTT 59.790 52.381 0.00 0.00 37.58 3.27
173 174 2.680841 CTCGTGGTTTTGGAACTTGTGA 59.319 45.455 0.00 0.00 36.03 3.58
175 176 2.162608 CGTGGTTTTGGAACTTGTGACA 59.837 45.455 0.00 0.00 36.03 3.58
178 179 2.165437 GGTTTTGGAACTTGTGACAGCA 59.835 45.455 0.00 0.00 36.03 4.41
181 182 2.708216 TGGAACTTGTGACAGCAGAA 57.292 45.000 0.00 0.00 0.00 3.02
184 185 3.953612 TGGAACTTGTGACAGCAGAAAAT 59.046 39.130 0.00 0.00 0.00 1.82
191 192 7.141363 ACTTGTGACAGCAGAAAATGTATTTC 58.859 34.615 0.00 0.00 0.00 2.17
192 193 6.631971 TGTGACAGCAGAAAATGTATTTCA 57.368 33.333 4.01 0.00 0.00 2.69
202 203 7.680588 GCAGAAAATGTATTTCATGGACTCCTC 60.681 40.741 4.01 0.00 36.81 3.71
207 208 5.491070 TGTATTTCATGGACTCCTCTGTTG 58.509 41.667 0.00 0.00 0.00 3.33
214 215 2.711009 TGGACTCCTCTGTTGGTTTCAT 59.289 45.455 0.00 0.00 0.00 2.57
223 224 6.071952 TCCTCTGTTGGTTTCATGATTTTAGC 60.072 38.462 0.00 0.00 0.00 3.09
224 225 6.294675 CCTCTGTTGGTTTCATGATTTTAGCA 60.295 38.462 0.00 0.00 0.00 3.49
238 239 9.121517 CATGATTTTAGCAAATTTATAGAGGCG 57.878 33.333 0.00 0.00 32.35 5.52
239 240 7.138736 TGATTTTAGCAAATTTATAGAGGCGC 58.861 34.615 0.00 0.00 32.35 6.53
245 246 5.765182 AGCAAATTTATAGAGGCGCAGTTAT 59.235 36.000 10.83 5.88 0.00 1.89
250 251 3.819564 ATAGAGGCGCAGTTATGTCAA 57.180 42.857 10.83 0.00 0.00 3.18
257 258 2.677836 GCGCAGTTATGTCAAATGGAGA 59.322 45.455 0.30 0.00 0.00 3.71
284 285 2.912025 CCCACAACACACCTGGGC 60.912 66.667 0.00 0.00 38.42 5.36
432 434 1.487976 ACGGTCTGATCGGTCCTACTA 59.512 52.381 15.53 0.00 0.00 1.82
530 669 2.031769 CACAACACGAGTACACGTCCTA 60.032 50.000 15.60 0.00 44.76 2.94
536 675 1.664659 CGAGTACACGTCCTACTCCTG 59.335 57.143 18.21 7.13 37.79 3.86
805 1016 2.917227 TCAGTCGCTCCACTGCCA 60.917 61.111 3.13 0.00 43.18 4.92
1045 1256 1.126948 TCACCACTCATCAGCACCCA 61.127 55.000 0.00 0.00 0.00 4.51
1198 1409 4.235079 ACATGCCTTCCAATGTTAGCTA 57.765 40.909 0.00 0.00 0.00 3.32
1549 1806 1.148027 ACTCCACTCCAGAACTCTCCA 59.852 52.381 0.00 0.00 0.00 3.86
1625 1889 5.867903 ATCAACCAACTTTTCCATGAACA 57.132 34.783 0.00 0.00 0.00 3.18
1626 1890 5.261209 TCAACCAACTTTTCCATGAACAG 57.739 39.130 0.00 0.00 0.00 3.16
1919 2193 6.035843 TGTCTTCTCACTTTTTGTCAAATGC 58.964 36.000 0.00 0.00 0.00 3.56
2136 2431 2.047560 GGTTGGGACCGAAGACCG 60.048 66.667 0.00 0.00 35.91 4.79
2137 2432 2.576832 GGTTGGGACCGAAGACCGA 61.577 63.158 0.00 0.00 41.76 4.69
2138 2433 1.368579 GTTGGGACCGAAGACCGAA 59.631 57.895 0.00 0.00 41.76 4.30
2139 2434 0.036671 GTTGGGACCGAAGACCGAAT 60.037 55.000 0.00 0.00 41.76 3.34
2140 2435 0.688487 TTGGGACCGAAGACCGAATT 59.312 50.000 0.00 0.00 41.76 2.17
2141 2436 0.036765 TGGGACCGAAGACCGAATTG 60.037 55.000 0.00 0.00 41.76 2.32
2142 2437 0.036671 GGGACCGAAGACCGAATTGT 60.037 55.000 0.00 0.00 41.76 2.71
2143 2438 1.205417 GGGACCGAAGACCGAATTGTA 59.795 52.381 0.00 0.00 41.76 2.41
2144 2439 2.354003 GGGACCGAAGACCGAATTGTAA 60.354 50.000 0.00 0.00 41.76 2.41
2145 2440 3.328505 GGACCGAAGACCGAATTGTAAA 58.671 45.455 0.00 0.00 41.76 2.01
2146 2441 3.370061 GGACCGAAGACCGAATTGTAAAG 59.630 47.826 0.00 0.00 41.76 1.85
2147 2442 4.240096 GACCGAAGACCGAATTGTAAAGA 58.760 43.478 0.00 0.00 41.76 2.52
2148 2443 3.992427 ACCGAAGACCGAATTGTAAAGAC 59.008 43.478 0.00 0.00 41.76 3.01
2149 2444 3.370061 CCGAAGACCGAATTGTAAAGACC 59.630 47.826 0.00 0.00 41.76 3.85
2150 2445 3.060363 CGAAGACCGAATTGTAAAGACCG 59.940 47.826 0.00 0.00 41.76 4.79
2151 2446 3.947910 AGACCGAATTGTAAAGACCGA 57.052 42.857 0.00 0.00 0.00 4.69
2152 2447 4.261578 AGACCGAATTGTAAAGACCGAA 57.738 40.909 0.00 0.00 0.00 4.30
2153 2448 4.243270 AGACCGAATTGTAAAGACCGAAG 58.757 43.478 0.00 0.00 0.00 3.79
2154 2449 4.021719 AGACCGAATTGTAAAGACCGAAGA 60.022 41.667 0.00 0.00 0.00 2.87
2155 2450 3.992427 ACCGAATTGTAAAGACCGAAGAC 59.008 43.478 0.00 0.00 0.00 3.01
2156 2451 3.370061 CCGAATTGTAAAGACCGAAGACC 59.630 47.826 0.00 0.00 0.00 3.85
2229 2524 5.990386 GGAAGACCGAATTATTAGAAGACCC 59.010 44.000 0.00 0.00 0.00 4.46
2286 2581 4.468689 GGGCTGACCTGGGCGTAC 62.469 72.222 0.00 0.00 35.85 3.67
2287 2582 4.468689 GGCTGACCTGGGCGTACC 62.469 72.222 0.00 0.00 40.81 3.34
2288 2583 3.391382 GCTGACCTGGGCGTACCT 61.391 66.667 0.00 0.00 41.11 3.08
2289 2584 2.056223 GCTGACCTGGGCGTACCTA 61.056 63.158 0.00 0.00 41.11 3.08
2290 2585 1.814527 CTGACCTGGGCGTACCTAC 59.185 63.158 0.00 0.00 41.11 3.18
2291 2586 1.673808 CTGACCTGGGCGTACCTACC 61.674 65.000 0.00 0.00 41.11 3.18
2293 2588 3.159347 CCTGGGCGTACCTACCCC 61.159 72.222 10.06 5.04 46.43 4.95
2294 2589 3.159347 CTGGGCGTACCTACCCCC 61.159 72.222 10.06 0.00 46.43 5.40
2317 2612 4.988598 CGCGCCCTGGTGTCTTGT 62.989 66.667 0.00 0.00 0.00 3.16
2318 2613 3.357079 GCGCCCTGGTGTCTTGTG 61.357 66.667 0.00 0.00 0.00 3.33
2319 2614 2.669569 CGCCCTGGTGTCTTGTGG 60.670 66.667 0.00 0.00 0.00 4.17
2320 2615 2.282462 GCCCTGGTGTCTTGTGGG 60.282 66.667 0.00 0.00 40.74 4.61
2321 2616 2.282462 CCCTGGTGTCTTGTGGGC 60.282 66.667 0.00 0.00 0.00 5.36
2322 2617 2.282462 CCTGGTGTCTTGTGGGCC 60.282 66.667 0.00 0.00 0.00 5.80
2323 2618 2.282462 CTGGTGTCTTGTGGGCCC 60.282 66.667 17.59 17.59 0.00 5.80
2324 2619 3.099841 TGGTGTCTTGTGGGCCCA 61.100 61.111 24.45 24.45 0.00 5.36
2325 2620 2.430704 CTGGTGTCTTGTGGGCCCAT 62.431 60.000 31.45 0.00 0.00 4.00
2326 2621 1.978617 GGTGTCTTGTGGGCCCATG 60.979 63.158 31.45 21.06 0.00 3.66
2327 2622 1.074775 GTGTCTTGTGGGCCCATGA 59.925 57.895 31.45 23.06 0.00 3.07
2328 2623 0.323725 GTGTCTTGTGGGCCCATGAT 60.324 55.000 31.45 0.00 0.00 2.45
2329 2624 0.034186 TGTCTTGTGGGCCCATGATC 60.034 55.000 31.45 16.27 0.00 2.92
2330 2625 0.753111 GTCTTGTGGGCCCATGATCC 60.753 60.000 31.45 15.83 0.00 3.36
2331 2626 1.213619 TCTTGTGGGCCCATGATCCA 61.214 55.000 31.45 18.70 0.00 3.41
2332 2627 0.105862 CTTGTGGGCCCATGATCCAT 60.106 55.000 31.45 0.00 32.71 3.41
2333 2628 0.106066 TTGTGGGCCCATGATCCATC 60.106 55.000 31.45 13.27 32.71 3.51
2334 2629 1.287773 TGTGGGCCCATGATCCATCA 61.288 55.000 31.45 16.15 41.70 3.07
2336 2631 0.406750 TGGGCCCATGATCCATCATC 59.593 55.000 24.45 0.00 45.23 2.92
2337 2632 0.702902 GGGCCCATGATCCATCATCT 59.297 55.000 19.95 0.00 45.23 2.90
2338 2633 1.616187 GGGCCCATGATCCATCATCTG 60.616 57.143 19.95 0.00 45.23 2.90
2339 2634 1.616187 GGCCCATGATCCATCATCTGG 60.616 57.143 0.00 5.00 45.23 3.86
2340 2635 1.075050 GCCCATGATCCATCATCTGGT 59.925 52.381 12.90 0.00 45.23 4.00
2341 2636 2.878935 GCCCATGATCCATCATCTGGTC 60.879 54.545 12.90 0.00 45.23 4.02
2342 2637 2.643304 CCCATGATCCATCATCTGGTCT 59.357 50.000 0.00 0.00 45.23 3.85
2343 2638 3.074094 CCCATGATCCATCATCTGGTCTT 59.926 47.826 0.00 0.00 45.23 3.01
2344 2639 4.325119 CCATGATCCATCATCTGGTCTTC 58.675 47.826 0.00 0.00 45.23 2.87
2345 2640 4.041815 CCATGATCCATCATCTGGTCTTCT 59.958 45.833 0.00 0.00 45.23 2.85
2346 2641 4.952071 TGATCCATCATCTGGTCTTCTC 57.048 45.455 0.00 0.00 46.08 2.87
2347 2642 3.645212 TGATCCATCATCTGGTCTTCTCC 59.355 47.826 0.00 0.00 46.08 3.71
2348 2643 3.411454 TCCATCATCTGGTCTTCTCCT 57.589 47.619 0.00 0.00 46.08 3.69
2349 2644 3.036819 TCCATCATCTGGTCTTCTCCTG 58.963 50.000 0.00 0.00 46.08 3.86
2350 2645 3.036819 CCATCATCTGGTCTTCTCCTGA 58.963 50.000 0.00 0.00 40.49 3.86
2351 2646 3.453717 CCATCATCTGGTCTTCTCCTGAA 59.546 47.826 0.00 0.00 40.49 3.02
2352 2647 4.443175 CCATCATCTGGTCTTCTCCTGAAG 60.443 50.000 0.00 0.00 42.36 3.02
2353 2648 2.499289 TCATCTGGTCTTCTCCTGAAGC 59.501 50.000 1.31 0.00 46.81 3.86
2354 2649 2.317371 TCTGGTCTTCTCCTGAAGCT 57.683 50.000 1.31 0.00 46.81 3.74
2355 2650 2.614259 TCTGGTCTTCTCCTGAAGCTT 58.386 47.619 0.00 0.00 46.81 3.74
2356 2651 2.564947 TCTGGTCTTCTCCTGAAGCTTC 59.435 50.000 19.89 19.89 46.81 3.86
2357 2652 2.566724 CTGGTCTTCTCCTGAAGCTTCT 59.433 50.000 26.09 0.00 46.81 2.85
2358 2653 3.766591 CTGGTCTTCTCCTGAAGCTTCTA 59.233 47.826 26.09 12.33 46.81 2.10
2359 2654 3.766591 TGGTCTTCTCCTGAAGCTTCTAG 59.233 47.826 26.09 19.83 46.81 2.43
2360 2655 3.767131 GGTCTTCTCCTGAAGCTTCTAGT 59.233 47.826 26.09 0.00 46.81 2.57
2361 2656 4.381505 GGTCTTCTCCTGAAGCTTCTAGTG 60.382 50.000 26.09 17.11 46.81 2.74
2362 2657 4.219725 GTCTTCTCCTGAAGCTTCTAGTGT 59.780 45.833 26.09 0.00 46.81 3.55
2363 2658 4.461081 TCTTCTCCTGAAGCTTCTAGTGTC 59.539 45.833 26.09 0.00 46.81 3.67
2364 2659 4.040936 TCTCCTGAAGCTTCTAGTGTCT 57.959 45.455 26.09 0.00 0.00 3.41
2365 2660 4.013728 TCTCCTGAAGCTTCTAGTGTCTC 58.986 47.826 26.09 0.00 0.00 3.36
2366 2661 4.016444 CTCCTGAAGCTTCTAGTGTCTCT 58.984 47.826 26.09 0.00 0.00 3.10
2367 2662 4.411927 TCCTGAAGCTTCTAGTGTCTCTT 58.588 43.478 26.09 0.00 0.00 2.85
2368 2663 4.835615 TCCTGAAGCTTCTAGTGTCTCTTT 59.164 41.667 26.09 0.00 0.00 2.52
2369 2664 5.305644 TCCTGAAGCTTCTAGTGTCTCTTTT 59.694 40.000 26.09 0.00 0.00 2.27
2370 2665 5.407995 CCTGAAGCTTCTAGTGTCTCTTTTG 59.592 44.000 26.09 3.45 0.00 2.44
2371 2666 5.918608 TGAAGCTTCTAGTGTCTCTTTTGT 58.081 37.500 26.09 0.00 0.00 2.83
2372 2667 5.986135 TGAAGCTTCTAGTGTCTCTTTTGTC 59.014 40.000 26.09 0.00 0.00 3.18
2373 2668 5.799827 AGCTTCTAGTGTCTCTTTTGTCT 57.200 39.130 0.00 0.00 0.00 3.41
2374 2669 6.902771 AGCTTCTAGTGTCTCTTTTGTCTA 57.097 37.500 0.00 0.00 0.00 2.59
2375 2670 6.919721 AGCTTCTAGTGTCTCTTTTGTCTAG 58.080 40.000 0.00 0.00 0.00 2.43
2376 2671 6.717540 AGCTTCTAGTGTCTCTTTTGTCTAGA 59.282 38.462 0.00 0.00 34.24 2.43
2377 2672 7.231722 AGCTTCTAGTGTCTCTTTTGTCTAGAA 59.768 37.037 0.00 10.56 40.10 2.10
2378 2673 7.868415 GCTTCTAGTGTCTCTTTTGTCTAGAAA 59.132 37.037 11.66 0.00 41.05 2.52
2379 2674 9.751542 CTTCTAGTGTCTCTTTTGTCTAGAAAA 57.248 33.333 11.66 0.00 41.05 2.29
2401 2696 6.902224 AAAAATCTCCAAAAAGTTTCGTGG 57.098 33.333 10.68 10.68 0.00 4.94
2402 2697 3.643159 ATCTCCAAAAAGTTTCGTGGC 57.357 42.857 11.71 0.00 0.00 5.01
2403 2698 2.370349 TCTCCAAAAAGTTTCGTGGCA 58.630 42.857 11.71 0.00 0.00 4.92
2404 2699 2.955660 TCTCCAAAAAGTTTCGTGGCAT 59.044 40.909 11.71 0.00 0.00 4.40
2405 2700 3.383185 TCTCCAAAAAGTTTCGTGGCATT 59.617 39.130 11.71 0.00 0.00 3.56
2406 2701 4.119136 CTCCAAAAAGTTTCGTGGCATTT 58.881 39.130 11.71 0.00 0.00 2.32
2407 2702 3.868077 TCCAAAAAGTTTCGTGGCATTTG 59.132 39.130 11.71 0.00 0.00 2.32
2408 2703 3.002144 CCAAAAAGTTTCGTGGCATTTGG 59.998 43.478 9.74 9.74 39.30 3.28
2409 2704 3.810310 AAAAGTTTCGTGGCATTTGGA 57.190 38.095 0.00 0.00 0.00 3.53
2410 2705 2.793278 AAGTTTCGTGGCATTTGGAC 57.207 45.000 0.00 0.00 0.00 4.02
2411 2706 1.981256 AGTTTCGTGGCATTTGGACT 58.019 45.000 0.00 0.00 0.00 3.85
2412 2707 2.306847 AGTTTCGTGGCATTTGGACTT 58.693 42.857 0.00 0.00 0.00 3.01
2413 2708 2.293399 AGTTTCGTGGCATTTGGACTTC 59.707 45.455 0.00 0.00 0.00 3.01
2414 2709 0.871722 TTCGTGGCATTTGGACTTCG 59.128 50.000 0.00 0.00 0.00 3.79
2415 2710 0.250124 TCGTGGCATTTGGACTTCGT 60.250 50.000 0.00 0.00 0.00 3.85
2416 2711 0.591170 CGTGGCATTTGGACTTCGTT 59.409 50.000 0.00 0.00 0.00 3.85
2417 2712 1.001815 CGTGGCATTTGGACTTCGTTT 60.002 47.619 0.00 0.00 0.00 3.60
2418 2713 2.393764 GTGGCATTTGGACTTCGTTTG 58.606 47.619 0.00 0.00 0.00 2.93
2419 2714 1.339610 TGGCATTTGGACTTCGTTTGG 59.660 47.619 0.00 0.00 0.00 3.28
2420 2715 1.339929 GGCATTTGGACTTCGTTTGGT 59.660 47.619 0.00 0.00 0.00 3.67
2421 2716 2.554893 GGCATTTGGACTTCGTTTGGTA 59.445 45.455 0.00 0.00 0.00 3.25
2422 2717 3.561503 GCATTTGGACTTCGTTTGGTAC 58.438 45.455 0.00 0.00 0.00 3.34
2423 2718 3.252458 GCATTTGGACTTCGTTTGGTACT 59.748 43.478 0.00 0.00 0.00 2.73
2424 2719 4.783242 CATTTGGACTTCGTTTGGTACTG 58.217 43.478 0.00 0.00 0.00 2.74
2425 2720 3.823281 TTGGACTTCGTTTGGTACTGA 57.177 42.857 0.00 0.00 0.00 3.41
2426 2721 4.345859 TTGGACTTCGTTTGGTACTGAT 57.654 40.909 0.00 0.00 0.00 2.90
2427 2722 5.471556 TTGGACTTCGTTTGGTACTGATA 57.528 39.130 0.00 0.00 0.00 2.15
2428 2723 5.670792 TGGACTTCGTTTGGTACTGATAT 57.329 39.130 0.00 0.00 0.00 1.63
2429 2724 6.045072 TGGACTTCGTTTGGTACTGATATT 57.955 37.500 0.00 0.00 0.00 1.28
2430 2725 6.103997 TGGACTTCGTTTGGTACTGATATTC 58.896 40.000 0.00 0.00 0.00 1.75
2431 2726 6.070995 TGGACTTCGTTTGGTACTGATATTCT 60.071 38.462 0.00 0.00 0.00 2.40
2432 2727 7.123098 TGGACTTCGTTTGGTACTGATATTCTA 59.877 37.037 0.00 0.00 0.00 2.10
2433 2728 7.977853 GGACTTCGTTTGGTACTGATATTCTAA 59.022 37.037 0.00 0.00 0.00 2.10
2434 2729 8.928270 ACTTCGTTTGGTACTGATATTCTAAG 57.072 34.615 0.00 0.00 0.00 2.18
2435 2730 8.746530 ACTTCGTTTGGTACTGATATTCTAAGA 58.253 33.333 0.00 0.00 0.00 2.10
2436 2731 9.582431 CTTCGTTTGGTACTGATATTCTAAGAA 57.418 33.333 0.00 0.00 0.00 2.52
2437 2732 9.932207 TTCGTTTGGTACTGATATTCTAAGAAA 57.068 29.630 0.00 0.00 0.00 2.52
2438 2733 9.362539 TCGTTTGGTACTGATATTCTAAGAAAC 57.637 33.333 0.00 0.00 0.00 2.78
2439 2734 8.601476 CGTTTGGTACTGATATTCTAAGAAACC 58.399 37.037 0.00 0.00 0.00 3.27
2449 2744 9.974980 TGATATTCTAAGAAACCAAAAACAACC 57.025 29.630 0.00 0.00 0.00 3.77
2453 2748 8.904099 TTCTAAGAAACCAAAAACAACCAAAA 57.096 26.923 0.00 0.00 0.00 2.44
2454 2749 8.904099 TCTAAGAAACCAAAAACAACCAAAAA 57.096 26.923 0.00 0.00 0.00 1.94
2496 2791 6.126968 GGGCACTAAGTTAATAGGTTAGTCCA 60.127 42.308 0.00 0.00 35.30 4.02
2600 2897 9.742144 ATATAGATACTTTGGAGACGTATCAGT 57.258 33.333 12.92 9.47 41.05 3.41
2602 2899 9.742144 ATAGATACTTTGGAGACGTATCAGTAT 57.258 33.333 16.90 16.90 41.05 2.12
2603 2900 8.101654 AGATACTTTGGAGACGTATCAGTATC 57.898 38.462 26.21 26.21 41.05 2.24
2611 2908 6.804770 GAGACGTATCAGTATCCACTATGT 57.195 41.667 5.07 0.00 32.21 2.29
2612 2909 7.204496 GAGACGTATCAGTATCCACTATGTT 57.796 40.000 5.07 0.00 32.21 2.71
2613 2910 7.204496 AGACGTATCAGTATCCACTATGTTC 57.796 40.000 0.00 0.00 32.21 3.18
2614 2911 6.999272 AGACGTATCAGTATCCACTATGTTCT 59.001 38.462 0.00 0.00 32.21 3.01
2615 2912 6.971602 ACGTATCAGTATCCACTATGTTCTG 58.028 40.000 0.00 0.00 32.21 3.02
2616 2913 6.016192 ACGTATCAGTATCCACTATGTTCTGG 60.016 42.308 0.00 0.00 32.21 3.86
2617 2914 5.815233 ATCAGTATCCACTATGTTCTGGG 57.185 43.478 0.00 0.00 32.21 4.45
2618 2915 4.878968 TCAGTATCCACTATGTTCTGGGA 58.121 43.478 0.00 0.00 32.21 4.37
2619 2916 5.467738 TCAGTATCCACTATGTTCTGGGAT 58.532 41.667 0.00 0.00 41.13 3.85
2620 2917 5.905331 TCAGTATCCACTATGTTCTGGGATT 59.095 40.000 0.00 0.00 39.08 3.01
2621 2918 5.994054 CAGTATCCACTATGTTCTGGGATTG 59.006 44.000 0.00 0.00 39.08 2.67
2622 2919 5.905331 AGTATCCACTATGTTCTGGGATTGA 59.095 40.000 0.00 0.00 39.08 2.57
2623 2920 5.919348 ATCCACTATGTTCTGGGATTGAT 57.081 39.130 0.00 0.00 34.81 2.57
2624 2921 5.039920 TCCACTATGTTCTGGGATTGATG 57.960 43.478 0.00 0.00 0.00 3.07
2625 2922 4.474651 TCCACTATGTTCTGGGATTGATGT 59.525 41.667 0.00 0.00 0.00 3.06
2626 2923 5.044919 TCCACTATGTTCTGGGATTGATGTT 60.045 40.000 0.00 0.00 0.00 2.71
2627 2924 5.066893 CCACTATGTTCTGGGATTGATGTTG 59.933 44.000 0.00 0.00 0.00 3.33
2628 2925 4.641989 ACTATGTTCTGGGATTGATGTTGC 59.358 41.667 0.00 0.00 0.00 4.17
2629 2926 3.159213 TGTTCTGGGATTGATGTTGCT 57.841 42.857 0.00 0.00 0.00 3.91
2630 2927 4.299586 TGTTCTGGGATTGATGTTGCTA 57.700 40.909 0.00 0.00 0.00 3.49
2631 2928 4.858850 TGTTCTGGGATTGATGTTGCTAT 58.141 39.130 0.00 0.00 0.00 2.97
2632 2929 4.641541 TGTTCTGGGATTGATGTTGCTATG 59.358 41.667 0.00 0.00 0.00 2.23
2633 2930 4.776435 TCTGGGATTGATGTTGCTATGA 57.224 40.909 0.00 0.00 0.00 2.15
2634 2931 4.454678 TCTGGGATTGATGTTGCTATGAC 58.545 43.478 0.00 0.00 0.00 3.06
2635 2932 4.164796 TCTGGGATTGATGTTGCTATGACT 59.835 41.667 0.00 0.00 0.00 3.41
2636 2933 4.858850 TGGGATTGATGTTGCTATGACTT 58.141 39.130 0.00 0.00 0.00 3.01
2637 2934 5.263599 TGGGATTGATGTTGCTATGACTTT 58.736 37.500 0.00 0.00 0.00 2.66
2638 2935 5.125900 TGGGATTGATGTTGCTATGACTTTG 59.874 40.000 0.00 0.00 0.00 2.77
2639 2936 5.039333 GGATTGATGTTGCTATGACTTTGC 58.961 41.667 0.00 0.00 0.00 3.68
2640 2937 5.163581 GGATTGATGTTGCTATGACTTTGCT 60.164 40.000 0.00 0.00 0.00 3.91
2641 2938 6.038603 GGATTGATGTTGCTATGACTTTGCTA 59.961 38.462 0.00 0.00 0.00 3.49
2642 2939 7.255381 GGATTGATGTTGCTATGACTTTGCTAT 60.255 37.037 0.00 0.00 0.00 2.97
2643 2940 6.367686 TGATGTTGCTATGACTTTGCTATG 57.632 37.500 0.00 0.00 0.00 2.23
2644 2941 4.621068 TGTTGCTATGACTTTGCTATGC 57.379 40.909 0.00 0.00 0.00 3.14
2645 2942 4.264253 TGTTGCTATGACTTTGCTATGCT 58.736 39.130 0.00 0.00 0.00 3.79
2646 2943 4.701651 TGTTGCTATGACTTTGCTATGCTT 59.298 37.500 0.00 0.00 0.00 3.91
2647 2944 5.879777 TGTTGCTATGACTTTGCTATGCTTA 59.120 36.000 0.00 0.00 0.00 3.09
2648 2945 6.374053 TGTTGCTATGACTTTGCTATGCTTAA 59.626 34.615 0.00 0.00 0.00 1.85
2649 2946 7.067372 TGTTGCTATGACTTTGCTATGCTTAAT 59.933 33.333 0.00 0.00 0.00 1.40
2650 2947 6.962686 TGCTATGACTTTGCTATGCTTAATG 58.037 36.000 0.00 0.00 0.00 1.90
2651 2948 5.855395 GCTATGACTTTGCTATGCTTAATGC 59.145 40.000 0.00 0.00 43.25 3.56
2652 2949 6.293845 GCTATGACTTTGCTATGCTTAATGCT 60.294 38.462 0.00 0.00 43.37 3.79
2653 2950 5.902613 TGACTTTGCTATGCTTAATGCTT 57.097 34.783 0.00 0.00 43.37 3.91
2654 2951 5.643664 TGACTTTGCTATGCTTAATGCTTG 58.356 37.500 0.00 0.00 43.37 4.01
2655 2952 5.183713 TGACTTTGCTATGCTTAATGCTTGT 59.816 36.000 0.00 0.00 43.37 3.16
2656 2953 5.644644 ACTTTGCTATGCTTAATGCTTGTC 58.355 37.500 0.00 0.00 43.37 3.18
2657 2954 5.183713 ACTTTGCTATGCTTAATGCTTGTCA 59.816 36.000 0.00 0.00 43.37 3.58
2658 2955 4.621068 TGCTATGCTTAATGCTTGTCAC 57.379 40.909 0.00 0.00 43.37 3.67
2659 2956 4.264253 TGCTATGCTTAATGCTTGTCACT 58.736 39.130 0.00 0.00 43.37 3.41
2660 2957 5.427378 TGCTATGCTTAATGCTTGTCACTA 58.573 37.500 0.00 0.00 43.37 2.74
2661 2958 5.525012 TGCTATGCTTAATGCTTGTCACTAG 59.475 40.000 0.00 0.00 43.37 2.57
2662 2959 5.049818 GCTATGCTTAATGCTTGTCACTAGG 60.050 44.000 0.00 0.00 43.37 3.02
2663 2960 3.609853 TGCTTAATGCTTGTCACTAGGG 58.390 45.455 0.00 0.00 43.37 3.53
2664 2961 3.263170 TGCTTAATGCTTGTCACTAGGGA 59.737 43.478 0.00 0.00 43.37 4.20
2665 2962 3.623510 GCTTAATGCTTGTCACTAGGGAC 59.376 47.826 18.69 18.69 38.95 4.46
2666 2963 4.624125 GCTTAATGCTTGTCACTAGGGACT 60.624 45.833 25.11 7.10 40.09 3.85
2667 2964 3.340814 AATGCTTGTCACTAGGGACTG 57.659 47.619 25.11 18.04 41.52 3.51
2668 2965 2.009681 TGCTTGTCACTAGGGACTGA 57.990 50.000 25.11 13.15 41.52 3.41
2669 2966 1.895798 TGCTTGTCACTAGGGACTGAG 59.104 52.381 25.11 21.55 41.52 3.35
2670 2967 1.896465 GCTTGTCACTAGGGACTGAGT 59.104 52.381 25.11 0.00 41.52 3.41
2671 2968 2.353208 GCTTGTCACTAGGGACTGAGTG 60.353 54.545 25.11 11.64 41.52 3.51
2672 2969 1.257743 TGTCACTAGGGACTGAGTGC 58.742 55.000 25.11 0.00 41.52 4.40
2673 2970 0.533032 GTCACTAGGGACTGAGTGCC 59.467 60.000 18.25 16.00 44.57 5.01
2679 2976 3.965888 GGGACTGAGTGCCTTGATT 57.034 52.632 16.49 0.00 40.95 2.57
2680 2977 2.206576 GGGACTGAGTGCCTTGATTT 57.793 50.000 16.49 0.00 40.95 2.17
2681 2978 2.087646 GGGACTGAGTGCCTTGATTTC 58.912 52.381 16.49 0.00 40.95 2.17
2682 2979 2.553028 GGGACTGAGTGCCTTGATTTCA 60.553 50.000 16.49 0.00 40.95 2.69
2683 2980 3.350833 GGACTGAGTGCCTTGATTTCAT 58.649 45.455 0.00 0.00 0.00 2.57
2684 2981 4.517285 GGACTGAGTGCCTTGATTTCATA 58.483 43.478 0.00 0.00 0.00 2.15
2685 2982 5.128919 GGACTGAGTGCCTTGATTTCATAT 58.871 41.667 0.00 0.00 0.00 1.78
2686 2983 5.238214 GGACTGAGTGCCTTGATTTCATATC 59.762 44.000 0.00 0.00 0.00 1.63
2687 2984 5.999044 ACTGAGTGCCTTGATTTCATATCT 58.001 37.500 0.00 0.00 0.00 1.98
2688 2985 5.821470 ACTGAGTGCCTTGATTTCATATCTG 59.179 40.000 0.00 0.00 0.00 2.90
2689 2986 5.993055 TGAGTGCCTTGATTTCATATCTGA 58.007 37.500 0.00 0.00 0.00 3.27
2690 2987 6.417258 TGAGTGCCTTGATTTCATATCTGAA 58.583 36.000 0.00 0.00 39.62 3.02
2691 2988 6.317140 TGAGTGCCTTGATTTCATATCTGAAC 59.683 38.462 0.00 0.00 41.05 3.18
2692 2989 5.591877 AGTGCCTTGATTTCATATCTGAACC 59.408 40.000 0.00 0.00 41.05 3.62
2693 2990 5.357878 GTGCCTTGATTTCATATCTGAACCA 59.642 40.000 0.00 0.00 41.05 3.67
2694 2991 6.040166 GTGCCTTGATTTCATATCTGAACCAT 59.960 38.462 0.00 0.00 41.05 3.55
2695 2992 6.608405 TGCCTTGATTTCATATCTGAACCATT 59.392 34.615 0.00 0.00 41.05 3.16
2696 2993 7.124599 TGCCTTGATTTCATATCTGAACCATTT 59.875 33.333 0.00 0.00 41.05 2.32
2697 2994 8.632679 GCCTTGATTTCATATCTGAACCATTTA 58.367 33.333 0.00 0.00 41.05 1.40
2707 3004 9.520204 CATATCTGAACCATTTATGTTTTCACC 57.480 33.333 0.00 0.00 0.00 4.02
2708 3005 6.968263 TCTGAACCATTTATGTTTTCACCA 57.032 33.333 0.00 0.00 0.00 4.17
2709 3006 7.537596 TCTGAACCATTTATGTTTTCACCAT 57.462 32.000 0.00 0.00 0.00 3.55
2710 3007 7.961351 TCTGAACCATTTATGTTTTCACCATT 58.039 30.769 0.00 0.00 0.00 3.16
2711 3008 9.083422 TCTGAACCATTTATGTTTTCACCATTA 57.917 29.630 0.00 0.00 0.00 1.90
2712 3009 9.874205 CTGAACCATTTATGTTTTCACCATTAT 57.126 29.630 0.00 0.00 0.00 1.28
2729 3026 8.902806 TCACCATTATATTTGTGTTCTTGATCC 58.097 33.333 0.00 0.00 0.00 3.36
2730 3027 8.906867 CACCATTATATTTGTGTTCTTGATCCT 58.093 33.333 0.00 0.00 0.00 3.24
2737 3034 6.500684 TTTGTGTTCTTGATCCTATCTTGC 57.499 37.500 0.00 0.00 0.00 4.01
2738 3035 5.164620 TGTGTTCTTGATCCTATCTTGCA 57.835 39.130 0.00 0.00 0.00 4.08
2739 3036 5.559770 TGTGTTCTTGATCCTATCTTGCAA 58.440 37.500 0.00 0.00 0.00 4.08
2740 3037 6.003326 TGTGTTCTTGATCCTATCTTGCAAA 58.997 36.000 0.00 0.00 0.00 3.68
2741 3038 6.660521 TGTGTTCTTGATCCTATCTTGCAAAT 59.339 34.615 0.00 0.00 0.00 2.32
2742 3039 7.177216 TGTGTTCTTGATCCTATCTTGCAAATT 59.823 33.333 0.00 0.00 0.00 1.82
2743 3040 7.487189 GTGTTCTTGATCCTATCTTGCAAATTG 59.513 37.037 0.00 0.00 0.00 2.32
2744 3041 7.177216 TGTTCTTGATCCTATCTTGCAAATTGT 59.823 33.333 0.00 0.00 0.00 2.71
2745 3042 8.677300 GTTCTTGATCCTATCTTGCAAATTGTA 58.323 33.333 0.00 0.00 0.00 2.41
2746 3043 8.985315 TCTTGATCCTATCTTGCAAATTGTAT 57.015 30.769 0.00 0.00 0.00 2.29
2747 3044 8.843262 TCTTGATCCTATCTTGCAAATTGTATG 58.157 33.333 0.00 0.00 0.00 2.39
2748 3045 6.973843 TGATCCTATCTTGCAAATTGTATGC 58.026 36.000 0.00 0.00 44.08 3.14
2755 3052 2.660189 GCAAATTGTATGCACCTGCT 57.340 45.000 0.00 0.00 43.29 4.24
2756 3053 3.781079 GCAAATTGTATGCACCTGCTA 57.219 42.857 0.00 0.00 43.29 3.49
2757 3054 3.438360 GCAAATTGTATGCACCTGCTAC 58.562 45.455 0.00 0.00 43.29 3.58
2758 3055 3.683989 CAAATTGTATGCACCTGCTACG 58.316 45.455 0.00 0.00 42.66 3.51
2759 3056 2.691409 ATTGTATGCACCTGCTACGT 57.309 45.000 0.00 0.00 42.66 3.57
2760 3057 2.004583 TTGTATGCACCTGCTACGTC 57.995 50.000 0.00 0.00 42.66 4.34
2761 3058 1.182667 TGTATGCACCTGCTACGTCT 58.817 50.000 0.00 0.00 42.66 4.18
2762 3059 1.548719 TGTATGCACCTGCTACGTCTT 59.451 47.619 0.00 0.00 42.66 3.01
2763 3060 2.756207 TGTATGCACCTGCTACGTCTTA 59.244 45.455 0.00 0.00 42.66 2.10
2764 3061 3.383505 TGTATGCACCTGCTACGTCTTAT 59.616 43.478 0.00 0.00 42.66 1.73
2765 3062 2.293677 TGCACCTGCTACGTCTTATG 57.706 50.000 0.00 0.00 42.66 1.90
2766 3063 1.822371 TGCACCTGCTACGTCTTATGA 59.178 47.619 0.00 0.00 42.66 2.15
2767 3064 2.430694 TGCACCTGCTACGTCTTATGAT 59.569 45.455 0.00 0.00 42.66 2.45
2768 3065 3.053455 GCACCTGCTACGTCTTATGATC 58.947 50.000 0.00 0.00 38.21 2.92
2769 3066 3.243569 GCACCTGCTACGTCTTATGATCT 60.244 47.826 0.00 0.00 38.21 2.75
2770 3067 4.294232 CACCTGCTACGTCTTATGATCTG 58.706 47.826 0.00 0.00 0.00 2.90
2771 3068 3.243569 ACCTGCTACGTCTTATGATCTGC 60.244 47.826 0.00 0.00 0.00 4.26
2772 3069 3.243535 CCTGCTACGTCTTATGATCTGCA 60.244 47.826 0.00 0.00 0.00 4.41
2773 3070 4.554292 CTGCTACGTCTTATGATCTGCAT 58.446 43.478 0.00 0.00 41.08 3.96
2774 3071 5.335976 CCTGCTACGTCTTATGATCTGCATA 60.336 44.000 0.00 0.00 38.44 3.14
2775 3072 6.084326 TGCTACGTCTTATGATCTGCATAA 57.916 37.500 0.00 0.00 44.92 1.90
2776 3073 5.920840 TGCTACGTCTTATGATCTGCATAAC 59.079 40.000 0.00 0.00 42.88 1.89
2777 3074 5.346281 GCTACGTCTTATGATCTGCATAACC 59.654 44.000 0.00 0.00 42.88 2.85
2778 3075 4.632153 ACGTCTTATGATCTGCATAACCC 58.368 43.478 0.00 0.00 42.88 4.11
2779 3076 4.100963 ACGTCTTATGATCTGCATAACCCA 59.899 41.667 0.00 0.00 42.88 4.51
2780 3077 5.056480 CGTCTTATGATCTGCATAACCCAA 58.944 41.667 0.00 0.00 42.88 4.12
2781 3078 5.702670 CGTCTTATGATCTGCATAACCCAAT 59.297 40.000 0.00 0.00 42.88 3.16
2782 3079 6.347969 CGTCTTATGATCTGCATAACCCAATG 60.348 42.308 0.00 0.00 42.88 2.82
2783 3080 6.488006 GTCTTATGATCTGCATAACCCAATGT 59.512 38.462 0.00 0.00 42.88 2.71
2784 3081 6.487668 TCTTATGATCTGCATAACCCAATGTG 59.512 38.462 0.00 0.00 42.88 3.21
2785 3082 4.233632 TGATCTGCATAACCCAATGTGA 57.766 40.909 0.00 0.00 0.00 3.58
2786 3083 3.947196 TGATCTGCATAACCCAATGTGAC 59.053 43.478 0.00 0.00 0.00 3.67
2787 3084 3.431673 TCTGCATAACCCAATGTGACA 57.568 42.857 0.00 0.00 0.00 3.58
2788 3085 3.346315 TCTGCATAACCCAATGTGACAG 58.654 45.455 0.00 0.00 0.00 3.51
2789 3086 3.084039 CTGCATAACCCAATGTGACAGT 58.916 45.455 0.00 0.00 0.00 3.55
2790 3087 4.019771 TCTGCATAACCCAATGTGACAGTA 60.020 41.667 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.303333 AGTTAGTAGCTAGATGGCTTCTTCC 59.697 44.000 8.31 0.70 42.97 3.46
9 10 5.644636 GTCGATAGTTAGTAGCTAGATGGCT 59.355 44.000 0.00 0.00 41.05 4.75
15 16 6.539464 CCTATGGGTCGATAGTTAGTAGCTAG 59.461 46.154 0.00 0.00 37.40 3.42
64 65 0.469917 ATACTTGCCACCCTCCGATG 59.530 55.000 0.00 0.00 0.00 3.84
74 75 2.104792 GGGCTCTACATCATACTTGCCA 59.895 50.000 0.00 0.00 40.72 4.92
75 76 2.551071 GGGGCTCTACATCATACTTGCC 60.551 54.545 0.00 0.00 38.49 4.52
81 82 1.507742 TGGAGGGGGCTCTACATCATA 59.492 52.381 0.00 0.00 0.00 2.15
130 131 1.005924 TCCCATCTGGAGGCCTTTTTC 59.994 52.381 6.77 0.00 38.61 2.29
143 144 2.356125 CCAAAACCACGAGATCCCATCT 60.356 50.000 0.00 0.00 43.70 2.90
157 158 2.165437 TGCTGTCACAAGTTCCAAAACC 59.835 45.455 0.00 0.00 35.92 3.27
161 162 2.708216 TCTGCTGTCACAAGTTCCAA 57.292 45.000 0.00 0.00 0.00 3.53
173 174 6.435277 AGTCCATGAAATACATTTTCTGCTGT 59.565 34.615 0.00 0.00 37.07 4.40
175 176 6.096001 GGAGTCCATGAAATACATTTTCTGCT 59.904 38.462 3.60 0.00 37.07 4.24
178 179 7.555554 CAGAGGAGTCCATGAAATACATTTTCT 59.444 37.037 12.86 0.00 37.07 2.52
181 182 6.725364 ACAGAGGAGTCCATGAAATACATTT 58.275 36.000 18.48 0.00 37.07 2.32
184 185 5.491070 CAACAGAGGAGTCCATGAAATACA 58.509 41.667 18.48 0.00 0.00 2.29
191 192 2.867109 AACCAACAGAGGAGTCCATG 57.133 50.000 12.86 12.21 0.00 3.66
192 193 2.711009 TGAAACCAACAGAGGAGTCCAT 59.289 45.455 12.86 0.00 0.00 3.41
202 203 7.712264 TTTGCTAAAATCATGAAACCAACAG 57.288 32.000 0.00 0.00 0.00 3.16
214 215 7.138736 GCGCCTCTATAAATTTGCTAAAATCA 58.861 34.615 0.00 0.00 34.84 2.57
223 224 6.959361 ACATAACTGCGCCTCTATAAATTTG 58.041 36.000 4.18 0.00 0.00 2.32
224 225 6.765989 TGACATAACTGCGCCTCTATAAATTT 59.234 34.615 4.18 0.00 0.00 1.82
245 246 2.108075 ACCCACATGTCTCCATTTGACA 59.892 45.455 0.00 0.00 46.58 3.58
250 251 0.625849 GGGACCCACATGTCTCCATT 59.374 55.000 5.33 0.00 35.54 3.16
284 285 0.961358 TTTTTATGCCCGGGGTGACG 60.961 55.000 25.28 0.00 0.00 4.35
432 434 4.726035 TGGTCTATTCGGTCCTAGAGAT 57.274 45.455 0.00 0.00 0.00 2.75
530 669 1.000955 GTGAACCGTGATGTCAGGAGT 59.999 52.381 4.40 0.00 33.92 3.85
536 675 1.798813 GTTCCTGTGAACCGTGATGTC 59.201 52.381 0.00 0.00 44.20 3.06
889 1100 2.399607 AACTGGTTGGGGCCTTGGA 61.400 57.895 0.84 0.00 0.00 3.53
944 1155 2.045926 GGCGGTGGAGCAACTGAT 60.046 61.111 0.00 0.00 39.27 2.90
1045 1256 4.230657 CGACGAACAGAGTTGAAGAAGAT 58.769 43.478 0.00 0.00 0.00 2.40
1198 1409 9.836864 TGATGACAGATATAACAAATTAGCTGT 57.163 29.630 0.00 0.92 35.51 4.40
1225 1436 5.104527 TCACAATAGGAAGGATAGTGGGTTG 60.105 44.000 0.00 0.00 0.00 3.77
1549 1806 6.538381 GGAGTGTGTTTGGTTGATGAAAAATT 59.462 34.615 0.00 0.00 0.00 1.82
2136 2431 4.240096 TCGGTCTTCGGTCTTTACAATTC 58.760 43.478 0.00 0.00 39.77 2.17
2137 2432 4.261578 TCGGTCTTCGGTCTTTACAATT 57.738 40.909 0.00 0.00 39.77 2.32
2138 2433 3.947910 TCGGTCTTCGGTCTTTACAAT 57.052 42.857 0.00 0.00 39.77 2.71
2139 2434 3.731652 TTCGGTCTTCGGTCTTTACAA 57.268 42.857 0.00 0.00 39.77 2.41
2140 2435 3.947910 ATTCGGTCTTCGGTCTTTACA 57.052 42.857 0.00 0.00 39.77 2.41
2141 2436 4.991472 ACTATTCGGTCTTCGGTCTTTAC 58.009 43.478 0.00 0.00 39.77 2.01
2142 2437 5.649782 AACTATTCGGTCTTCGGTCTTTA 57.350 39.130 0.00 0.00 39.77 1.85
2143 2438 4.532314 AACTATTCGGTCTTCGGTCTTT 57.468 40.909 0.00 0.00 39.77 2.52
2144 2439 5.416952 TCTTAACTATTCGGTCTTCGGTCTT 59.583 40.000 0.00 0.00 39.77 3.01
2145 2440 4.946157 TCTTAACTATTCGGTCTTCGGTCT 59.054 41.667 0.00 0.00 39.77 3.85
2146 2441 5.240713 TCTTAACTATTCGGTCTTCGGTC 57.759 43.478 0.00 0.00 39.77 4.79
2147 2442 5.405797 GTTCTTAACTATTCGGTCTTCGGT 58.594 41.667 0.00 0.00 39.77 4.69
2148 2443 4.802563 GGTTCTTAACTATTCGGTCTTCGG 59.197 45.833 0.00 0.00 39.77 4.30
2149 2444 4.498323 CGGTTCTTAACTATTCGGTCTTCG 59.502 45.833 0.00 0.00 40.90 3.79
2150 2445 5.644644 TCGGTTCTTAACTATTCGGTCTTC 58.355 41.667 0.00 0.00 0.00 2.87
2151 2446 5.649782 TCGGTTCTTAACTATTCGGTCTT 57.350 39.130 0.00 0.00 0.00 3.01
2152 2447 5.649782 TTCGGTTCTTAACTATTCGGTCT 57.350 39.130 0.00 0.00 0.00 3.85
2153 2448 6.587608 TCTTTTCGGTTCTTAACTATTCGGTC 59.412 38.462 0.00 0.00 0.00 4.79
2154 2449 6.367149 GTCTTTTCGGTTCTTAACTATTCGGT 59.633 38.462 0.00 0.00 0.00 4.69
2155 2450 6.183360 GGTCTTTTCGGTTCTTAACTATTCGG 60.183 42.308 0.00 0.00 0.00 4.30
2156 2451 6.453396 CGGTCTTTTCGGTTCTTAACTATTCG 60.453 42.308 0.00 0.00 0.00 3.34
2229 2524 3.183754 GTTTGTTTGGTCCGGTCTTTTG 58.816 45.455 0.00 0.00 0.00 2.44
2300 2595 4.988598 ACAAGACACCAGGGCGCG 62.989 66.667 0.00 0.00 0.00 6.86
2301 2596 3.357079 CACAAGACACCAGGGCGC 61.357 66.667 0.00 0.00 0.00 6.53
2302 2597 2.669569 CCACAAGACACCAGGGCG 60.670 66.667 0.00 0.00 0.00 6.13
2303 2598 2.282462 CCCACAAGACACCAGGGC 60.282 66.667 0.00 0.00 31.81 5.19
2304 2599 2.282462 GCCCACAAGACACCAGGG 60.282 66.667 0.00 0.00 42.55 4.45
2305 2600 2.282462 GGCCCACAAGACACCAGG 60.282 66.667 0.00 0.00 0.00 4.45
2306 2601 2.282462 GGGCCCACAAGACACCAG 60.282 66.667 19.95 0.00 0.00 4.00
2307 2602 2.468868 ATGGGCCCACAAGACACCA 61.469 57.895 31.51 0.00 0.00 4.17
2308 2603 1.978617 CATGGGCCCACAAGACACC 60.979 63.158 31.51 0.00 0.00 4.16
2309 2604 0.323725 ATCATGGGCCCACAAGACAC 60.324 55.000 31.51 0.00 0.00 3.67
2310 2605 0.034186 GATCATGGGCCCACAAGACA 60.034 55.000 31.51 7.69 0.00 3.41
2311 2606 0.753111 GGATCATGGGCCCACAAGAC 60.753 60.000 31.51 17.42 0.00 3.01
2312 2607 1.213619 TGGATCATGGGCCCACAAGA 61.214 55.000 31.51 25.52 0.00 3.02
2313 2608 0.105862 ATGGATCATGGGCCCACAAG 60.106 55.000 31.51 20.71 32.07 3.16
2314 2609 0.106066 GATGGATCATGGGCCCACAA 60.106 55.000 31.51 19.57 32.07 3.33
2315 2610 1.287773 TGATGGATCATGGGCCCACA 61.288 55.000 31.51 21.48 32.07 4.17
2316 2611 0.113776 ATGATGGATCATGGGCCCAC 59.886 55.000 31.51 15.11 45.27 4.61
2317 2612 0.406750 GATGATGGATCATGGGCCCA 59.593 55.000 30.92 30.92 46.84 5.36
2318 2613 0.702902 AGATGATGGATCATGGGCCC 59.297 55.000 17.59 17.59 46.84 5.80
2319 2614 1.835494 CAGATGATGGATCATGGGCC 58.165 55.000 6.85 0.00 46.84 5.80
2330 2625 4.750021 TTCAGGAGAAGACCAGATGATG 57.250 45.455 0.00 0.00 0.00 3.07
2342 2637 4.411927 AGACACTAGAAGCTTCAGGAGAA 58.588 43.478 27.57 5.51 0.00 2.87
2343 2638 4.013728 GAGACACTAGAAGCTTCAGGAGA 58.986 47.826 27.57 6.99 0.00 3.71
2344 2639 4.016444 AGAGACACTAGAAGCTTCAGGAG 58.984 47.826 27.57 21.54 0.00 3.69
2345 2640 4.040936 AGAGACACTAGAAGCTTCAGGA 57.959 45.455 27.57 11.78 0.00 3.86
2346 2641 4.799564 AAGAGACACTAGAAGCTTCAGG 57.200 45.455 27.57 20.24 0.00 3.86
2347 2642 5.988561 ACAAAAGAGACACTAGAAGCTTCAG 59.011 40.000 27.57 22.32 0.00 3.02
2348 2643 5.918608 ACAAAAGAGACACTAGAAGCTTCA 58.081 37.500 27.57 12.90 0.00 3.02
2349 2644 6.220201 AGACAAAAGAGACACTAGAAGCTTC 58.780 40.000 19.11 19.11 0.00 3.86
2350 2645 6.168270 AGACAAAAGAGACACTAGAAGCTT 57.832 37.500 0.00 0.00 0.00 3.74
2351 2646 5.799827 AGACAAAAGAGACACTAGAAGCT 57.200 39.130 0.00 0.00 0.00 3.74
2352 2647 6.915349 TCTAGACAAAAGAGACACTAGAAGC 58.085 40.000 0.00 0.00 35.16 3.86
2353 2648 9.751542 TTTTCTAGACAAAAGAGACACTAGAAG 57.248 33.333 0.00 0.00 43.13 2.85
2378 2673 5.293324 GCCACGAAACTTTTTGGAGATTTTT 59.707 36.000 7.12 0.00 0.00 1.94
2379 2674 4.808895 GCCACGAAACTTTTTGGAGATTTT 59.191 37.500 7.12 0.00 0.00 1.82
2380 2675 4.142049 TGCCACGAAACTTTTTGGAGATTT 60.142 37.500 7.12 0.00 0.00 2.17
2381 2676 3.383185 TGCCACGAAACTTTTTGGAGATT 59.617 39.130 7.12 0.00 0.00 2.40
2382 2677 2.955660 TGCCACGAAACTTTTTGGAGAT 59.044 40.909 7.12 0.00 0.00 2.75
2383 2678 2.370349 TGCCACGAAACTTTTTGGAGA 58.630 42.857 7.12 0.00 0.00 3.71
2384 2679 2.861462 TGCCACGAAACTTTTTGGAG 57.139 45.000 7.12 0.00 0.00 3.86
2385 2680 3.810310 AATGCCACGAAACTTTTTGGA 57.190 38.095 7.12 0.00 0.00 3.53
2386 2681 3.002144 CCAAATGCCACGAAACTTTTTGG 59.998 43.478 0.00 0.00 36.68 3.28
2387 2682 3.868077 TCCAAATGCCACGAAACTTTTTG 59.132 39.130 0.00 0.00 0.00 2.44
2388 2683 3.868661 GTCCAAATGCCACGAAACTTTTT 59.131 39.130 0.00 0.00 0.00 1.94
2389 2684 3.132111 AGTCCAAATGCCACGAAACTTTT 59.868 39.130 0.00 0.00 0.00 2.27
2390 2685 2.693074 AGTCCAAATGCCACGAAACTTT 59.307 40.909 0.00 0.00 0.00 2.66
2391 2686 2.306847 AGTCCAAATGCCACGAAACTT 58.693 42.857 0.00 0.00 0.00 2.66
2392 2687 1.981256 AGTCCAAATGCCACGAAACT 58.019 45.000 0.00 0.00 0.00 2.66
2393 2688 2.661594 GAAGTCCAAATGCCACGAAAC 58.338 47.619 0.00 0.00 0.00 2.78
2394 2689 1.265635 CGAAGTCCAAATGCCACGAAA 59.734 47.619 0.00 0.00 0.00 3.46
2395 2690 0.871722 CGAAGTCCAAATGCCACGAA 59.128 50.000 0.00 0.00 0.00 3.85
2396 2691 0.250124 ACGAAGTCCAAATGCCACGA 60.250 50.000 0.00 0.00 29.74 4.35
2397 2692 0.591170 AACGAAGTCCAAATGCCACG 59.409 50.000 0.00 0.00 45.00 4.94
2398 2693 2.393764 CAAACGAAGTCCAAATGCCAC 58.606 47.619 0.00 0.00 45.00 5.01
2399 2694 1.339610 CCAAACGAAGTCCAAATGCCA 59.660 47.619 0.00 0.00 45.00 4.92
2400 2695 1.339929 ACCAAACGAAGTCCAAATGCC 59.660 47.619 0.00 0.00 45.00 4.40
2401 2696 2.793278 ACCAAACGAAGTCCAAATGC 57.207 45.000 0.00 0.00 45.00 3.56
2402 2697 4.513692 TCAGTACCAAACGAAGTCCAAATG 59.486 41.667 0.00 0.00 45.00 2.32
2403 2698 4.710324 TCAGTACCAAACGAAGTCCAAAT 58.290 39.130 0.00 0.00 45.00 2.32
2404 2699 4.139859 TCAGTACCAAACGAAGTCCAAA 57.860 40.909 0.00 0.00 45.00 3.28
2405 2700 3.823281 TCAGTACCAAACGAAGTCCAA 57.177 42.857 0.00 0.00 45.00 3.53
2406 2701 5.670792 ATATCAGTACCAAACGAAGTCCA 57.329 39.130 0.00 0.00 45.00 4.02
2407 2702 6.338937 AGAATATCAGTACCAAACGAAGTCC 58.661 40.000 0.00 0.00 45.00 3.85
2408 2703 8.922058 TTAGAATATCAGTACCAAACGAAGTC 57.078 34.615 0.00 0.00 45.00 3.01
2410 2705 9.582431 TTCTTAGAATATCAGTACCAAACGAAG 57.418 33.333 0.00 0.00 0.00 3.79
2411 2706 9.932207 TTTCTTAGAATATCAGTACCAAACGAA 57.068 29.630 0.00 0.00 0.00 3.85
2412 2707 9.362539 GTTTCTTAGAATATCAGTACCAAACGA 57.637 33.333 0.00 0.00 0.00 3.85
2413 2708 8.601476 GGTTTCTTAGAATATCAGTACCAAACG 58.399 37.037 0.00 0.00 0.00 3.60
2414 2709 9.444600 TGGTTTCTTAGAATATCAGTACCAAAC 57.555 33.333 9.25 0.00 0.00 2.93
2423 2718 9.974980 GGTTGTTTTTGGTTTCTTAGAATATCA 57.025 29.630 0.00 0.00 0.00 2.15
2424 2719 9.974980 TGGTTGTTTTTGGTTTCTTAGAATATC 57.025 29.630 0.00 0.00 0.00 1.63
2427 2722 9.508642 TTTTGGTTGTTTTTGGTTTCTTAGAAT 57.491 25.926 0.00 0.00 0.00 2.40
2428 2723 8.904099 TTTTGGTTGTTTTTGGTTTCTTAGAA 57.096 26.923 0.00 0.00 0.00 2.10
2429 2724 8.904099 TTTTTGGTTGTTTTTGGTTTCTTAGA 57.096 26.923 0.00 0.00 0.00 2.10
2459 2754 3.982241 GTGCCCAGTGCCAGTTGC 61.982 66.667 0.00 0.00 40.16 4.17
2470 2765 6.126968 GGACTAACCTATTAACTTAGTGCCCA 60.127 42.308 0.00 0.00 34.47 5.36
2584 2881 4.954202 AGTGGATACTGATACGTCTCCAAA 59.046 41.667 0.00 0.00 40.48 3.28
2599 2896 6.174720 TCAATCCCAGAACATAGTGGATAC 57.825 41.667 0.00 0.00 34.79 2.24
2600 2897 6.329986 ACATCAATCCCAGAACATAGTGGATA 59.670 38.462 0.00 0.00 34.79 2.59
2601 2898 5.133322 ACATCAATCCCAGAACATAGTGGAT 59.867 40.000 0.00 0.00 37.42 3.41
2602 2899 4.474651 ACATCAATCCCAGAACATAGTGGA 59.525 41.667 0.00 0.00 35.67 4.02
2603 2900 4.785301 ACATCAATCCCAGAACATAGTGG 58.215 43.478 0.00 0.00 0.00 4.00
2605 2902 4.641989 GCAACATCAATCCCAGAACATAGT 59.358 41.667 0.00 0.00 0.00 2.12
2606 2903 4.885907 AGCAACATCAATCCCAGAACATAG 59.114 41.667 0.00 0.00 0.00 2.23
2607 2904 4.858850 AGCAACATCAATCCCAGAACATA 58.141 39.130 0.00 0.00 0.00 2.29
2608 2905 3.705051 AGCAACATCAATCCCAGAACAT 58.295 40.909 0.00 0.00 0.00 2.71
2609 2906 3.159213 AGCAACATCAATCCCAGAACA 57.841 42.857 0.00 0.00 0.00 3.18
2610 2907 4.883585 TCATAGCAACATCAATCCCAGAAC 59.116 41.667 0.00 0.00 0.00 3.01
2611 2908 4.883585 GTCATAGCAACATCAATCCCAGAA 59.116 41.667 0.00 0.00 0.00 3.02
2612 2909 4.164796 AGTCATAGCAACATCAATCCCAGA 59.835 41.667 0.00 0.00 0.00 3.86
2613 2910 4.458397 AGTCATAGCAACATCAATCCCAG 58.542 43.478 0.00 0.00 0.00 4.45
2614 2911 4.508551 AGTCATAGCAACATCAATCCCA 57.491 40.909 0.00 0.00 0.00 4.37
2615 2912 5.585390 CAAAGTCATAGCAACATCAATCCC 58.415 41.667 0.00 0.00 0.00 3.85
2616 2913 5.039333 GCAAAGTCATAGCAACATCAATCC 58.961 41.667 0.00 0.00 0.00 3.01
2617 2914 5.888105 AGCAAAGTCATAGCAACATCAATC 58.112 37.500 0.00 0.00 0.00 2.67
2618 2915 5.909621 AGCAAAGTCATAGCAACATCAAT 57.090 34.783 0.00 0.00 0.00 2.57
2619 2916 6.678655 GCATAGCAAAGTCATAGCAACATCAA 60.679 38.462 0.00 0.00 0.00 2.57
2620 2917 5.220912 GCATAGCAAAGTCATAGCAACATCA 60.221 40.000 0.00 0.00 0.00 3.07
2621 2918 5.008415 AGCATAGCAAAGTCATAGCAACATC 59.992 40.000 0.00 0.00 0.00 3.06
2622 2919 4.885907 AGCATAGCAAAGTCATAGCAACAT 59.114 37.500 0.00 0.00 0.00 2.71
2623 2920 4.264253 AGCATAGCAAAGTCATAGCAACA 58.736 39.130 0.00 0.00 0.00 3.33
2624 2921 4.889832 AGCATAGCAAAGTCATAGCAAC 57.110 40.909 0.00 0.00 0.00 4.17
2625 2922 7.420002 CATTAAGCATAGCAAAGTCATAGCAA 58.580 34.615 0.00 0.00 0.00 3.91
2626 2923 6.513884 GCATTAAGCATAGCAAAGTCATAGCA 60.514 38.462 0.00 0.00 44.79 3.49
2627 2924 5.855395 GCATTAAGCATAGCAAAGTCATAGC 59.145 40.000 0.00 0.00 44.79 2.97
2639 2936 8.638495 GTCCCTAGTGACAAGCATTAAGCATAG 61.638 44.444 0.00 0.00 39.41 2.23
2640 2937 6.908240 GTCCCTAGTGACAAGCATTAAGCATA 60.908 42.308 0.00 0.00 39.41 3.14
2641 2938 6.147561 GTCCCTAGTGACAAGCATTAAGCAT 61.148 44.000 0.00 0.00 39.41 3.79
2642 2939 4.863115 GTCCCTAGTGACAAGCATTAAGCA 60.863 45.833 0.00 0.00 39.41 3.91
2643 2940 3.623510 GTCCCTAGTGACAAGCATTAAGC 59.376 47.826 0.00 0.00 38.17 3.09
2644 2941 4.872691 CAGTCCCTAGTGACAAGCATTAAG 59.127 45.833 8.13 0.00 37.73 1.85
2645 2942 4.530553 TCAGTCCCTAGTGACAAGCATTAA 59.469 41.667 8.13 0.00 37.73 1.40
2646 2943 4.093743 TCAGTCCCTAGTGACAAGCATTA 58.906 43.478 8.13 0.00 37.73 1.90
2647 2944 2.906389 TCAGTCCCTAGTGACAAGCATT 59.094 45.455 8.13 0.00 37.73 3.56
2648 2945 2.499289 CTCAGTCCCTAGTGACAAGCAT 59.501 50.000 8.13 0.00 37.73 3.79
2649 2946 1.895798 CTCAGTCCCTAGTGACAAGCA 59.104 52.381 8.13 0.00 37.73 3.91
2650 2947 1.896465 ACTCAGTCCCTAGTGACAAGC 59.104 52.381 8.13 0.00 37.73 4.01
2651 2948 2.353208 GCACTCAGTCCCTAGTGACAAG 60.353 54.545 8.13 7.09 44.79 3.16
2652 2949 1.618837 GCACTCAGTCCCTAGTGACAA 59.381 52.381 8.13 0.00 44.79 3.18
2653 2950 1.257743 GCACTCAGTCCCTAGTGACA 58.742 55.000 8.13 0.00 44.79 3.58
2654 2951 0.533032 GGCACTCAGTCCCTAGTGAC 59.467 60.000 6.65 0.00 44.79 3.67
2655 2952 0.409876 AGGCACTCAGTCCCTAGTGA 59.590 55.000 6.65 0.00 44.79 3.41
2656 2953 1.066573 CAAGGCACTCAGTCCCTAGTG 60.067 57.143 0.00 0.00 44.79 2.74
2657 2954 1.203187 TCAAGGCACTCAGTCCCTAGT 60.203 52.381 0.00 0.00 38.49 2.57
2658 2955 1.561643 TCAAGGCACTCAGTCCCTAG 58.438 55.000 0.00 0.00 38.49 3.02
2659 2956 2.254152 ATCAAGGCACTCAGTCCCTA 57.746 50.000 0.00 0.00 38.49 3.53
2660 2957 1.366319 AATCAAGGCACTCAGTCCCT 58.634 50.000 0.00 0.00 38.49 4.20
2661 2958 2.087646 GAAATCAAGGCACTCAGTCCC 58.912 52.381 0.00 0.00 38.49 4.46
2662 2959 2.783135 TGAAATCAAGGCACTCAGTCC 58.217 47.619 0.00 0.00 38.49 3.85
2663 2960 6.018098 CAGATATGAAATCAAGGCACTCAGTC 60.018 42.308 0.00 0.00 38.49 3.51
2664 2961 5.821470 CAGATATGAAATCAAGGCACTCAGT 59.179 40.000 0.00 0.00 38.49 3.41
2665 2962 6.053650 TCAGATATGAAATCAAGGCACTCAG 58.946 40.000 0.00 0.00 38.49 3.35
2666 2963 5.993055 TCAGATATGAAATCAAGGCACTCA 58.007 37.500 0.00 0.00 38.49 3.41
2667 2964 6.238593 GGTTCAGATATGAAATCAAGGCACTC 60.239 42.308 3.95 0.00 38.49 3.51
2669 2966 5.357878 TGGTTCAGATATGAAATCAAGGCAC 59.642 40.000 3.95 0.00 0.00 5.01
2670 2967 5.508567 TGGTTCAGATATGAAATCAAGGCA 58.491 37.500 3.95 0.00 0.00 4.75
2671 2968 6.645790 ATGGTTCAGATATGAAATCAAGGC 57.354 37.500 3.95 0.00 0.00 4.35
2681 2978 9.520204 GGTGAAAACATAAATGGTTCAGATATG 57.480 33.333 10.07 0.00 36.53 1.78
2682 2979 9.253832 TGGTGAAAACATAAATGGTTCAGATAT 57.746 29.630 10.07 0.00 36.53 1.63
2683 2980 8.642935 TGGTGAAAACATAAATGGTTCAGATA 57.357 30.769 10.07 1.33 36.53 1.98
2684 2981 7.537596 TGGTGAAAACATAAATGGTTCAGAT 57.462 32.000 10.07 0.00 36.53 2.90
2685 2982 6.968263 TGGTGAAAACATAAATGGTTCAGA 57.032 33.333 10.07 1.47 36.53 3.27
2686 2983 9.874205 ATAATGGTGAAAACATAAATGGTTCAG 57.126 29.630 10.07 0.00 36.53 3.02
2703 3000 8.902806 GGATCAAGAACACAAATATAATGGTGA 58.097 33.333 2.15 0.00 35.33 4.02
2704 3001 8.906867 AGGATCAAGAACACAAATATAATGGTG 58.093 33.333 0.00 0.00 37.29 4.17
2711 3008 8.844244 GCAAGATAGGATCAAGAACACAAATAT 58.156 33.333 0.00 0.00 0.00 1.28
2712 3009 7.828717 TGCAAGATAGGATCAAGAACACAAATA 59.171 33.333 0.00 0.00 0.00 1.40
2713 3010 6.660521 TGCAAGATAGGATCAAGAACACAAAT 59.339 34.615 0.00 0.00 0.00 2.32
2714 3011 6.003326 TGCAAGATAGGATCAAGAACACAAA 58.997 36.000 0.00 0.00 0.00 2.83
2715 3012 5.559770 TGCAAGATAGGATCAAGAACACAA 58.440 37.500 0.00 0.00 0.00 3.33
2716 3013 5.164620 TGCAAGATAGGATCAAGAACACA 57.835 39.130 0.00 0.00 0.00 3.72
2717 3014 6.500684 TTTGCAAGATAGGATCAAGAACAC 57.499 37.500 0.00 0.00 0.00 3.32
2718 3015 7.177216 ACAATTTGCAAGATAGGATCAAGAACA 59.823 33.333 0.00 0.00 0.00 3.18
2719 3016 7.542025 ACAATTTGCAAGATAGGATCAAGAAC 58.458 34.615 0.00 0.00 0.00 3.01
2720 3017 7.707624 ACAATTTGCAAGATAGGATCAAGAA 57.292 32.000 0.00 0.00 0.00 2.52
2721 3018 8.843262 CATACAATTTGCAAGATAGGATCAAGA 58.157 33.333 0.00 0.00 0.00 3.02
2722 3019 7.594015 GCATACAATTTGCAAGATAGGATCAAG 59.406 37.037 0.00 0.00 39.90 3.02
2723 3020 7.068470 TGCATACAATTTGCAAGATAGGATCAA 59.932 33.333 0.00 0.00 46.48 2.57
2724 3021 6.546772 TGCATACAATTTGCAAGATAGGATCA 59.453 34.615 0.00 0.00 46.48 2.92
2725 3022 6.973843 TGCATACAATTTGCAAGATAGGATC 58.026 36.000 0.00 0.00 46.48 3.36
2726 3023 6.964807 TGCATACAATTTGCAAGATAGGAT 57.035 33.333 0.00 0.00 46.48 3.24
2736 3033 2.660189 AGCAGGTGCATACAATTTGC 57.340 45.000 4.48 0.00 45.16 3.68
2737 3034 3.126858 ACGTAGCAGGTGCATACAATTTG 59.873 43.478 4.48 0.00 45.16 2.32
2738 3035 3.343617 ACGTAGCAGGTGCATACAATTT 58.656 40.909 4.48 0.00 45.16 1.82
2739 3036 2.936498 GACGTAGCAGGTGCATACAATT 59.064 45.455 4.48 0.00 45.16 2.32
2740 3037 2.168521 AGACGTAGCAGGTGCATACAAT 59.831 45.455 4.48 0.00 45.16 2.71
2741 3038 1.548719 AGACGTAGCAGGTGCATACAA 59.451 47.619 4.48 0.00 45.16 2.41
2742 3039 1.182667 AGACGTAGCAGGTGCATACA 58.817 50.000 4.48 0.00 45.16 2.29
2743 3040 2.295253 AAGACGTAGCAGGTGCATAC 57.705 50.000 4.48 3.59 45.16 2.39
2744 3041 3.634910 TCATAAGACGTAGCAGGTGCATA 59.365 43.478 4.48 0.00 45.16 3.14
2745 3042 2.430694 TCATAAGACGTAGCAGGTGCAT 59.569 45.455 4.48 0.00 45.16 3.96
2746 3043 1.822371 TCATAAGACGTAGCAGGTGCA 59.178 47.619 4.48 0.00 45.16 4.57
2747 3044 2.579207 TCATAAGACGTAGCAGGTGC 57.421 50.000 0.00 0.00 42.49 5.01
2748 3045 4.294232 CAGATCATAAGACGTAGCAGGTG 58.706 47.826 0.00 0.00 0.00 4.00
2749 3046 3.243569 GCAGATCATAAGACGTAGCAGGT 60.244 47.826 0.00 0.00 0.00 4.00
2750 3047 3.243535 TGCAGATCATAAGACGTAGCAGG 60.244 47.826 0.00 0.00 0.00 4.85
2751 3048 3.969899 TGCAGATCATAAGACGTAGCAG 58.030 45.455 0.00 0.00 0.00 4.24
2752 3049 4.590850 ATGCAGATCATAAGACGTAGCA 57.409 40.909 0.00 0.00 32.59 3.49
2753 3050 5.346281 GGTTATGCAGATCATAAGACGTAGC 59.654 44.000 0.00 0.00 45.44 3.58
2754 3051 5.864474 GGGTTATGCAGATCATAAGACGTAG 59.136 44.000 0.00 0.00 45.44 3.51
2755 3052 5.303333 TGGGTTATGCAGATCATAAGACGTA 59.697 40.000 0.00 0.00 45.44 3.57
2756 3053 4.100963 TGGGTTATGCAGATCATAAGACGT 59.899 41.667 0.00 0.00 45.44 4.34
2757 3054 4.631131 TGGGTTATGCAGATCATAAGACG 58.369 43.478 0.00 0.00 45.44 4.18
2758 3055 6.488006 ACATTGGGTTATGCAGATCATAAGAC 59.512 38.462 0.00 0.00 45.44 3.01
2759 3056 6.487668 CACATTGGGTTATGCAGATCATAAGA 59.512 38.462 0.00 0.00 45.44 2.10
2760 3057 6.487668 TCACATTGGGTTATGCAGATCATAAG 59.512 38.462 0.00 0.00 45.44 1.73
2761 3058 6.262944 GTCACATTGGGTTATGCAGATCATAA 59.737 38.462 0.00 0.00 43.37 1.90
2762 3059 5.764686 GTCACATTGGGTTATGCAGATCATA 59.235 40.000 0.00 0.00 36.63 2.15
2763 3060 4.581824 GTCACATTGGGTTATGCAGATCAT 59.418 41.667 0.00 0.00 39.17 2.45
2764 3061 3.947196 GTCACATTGGGTTATGCAGATCA 59.053 43.478 0.00 0.00 0.00 2.92
2765 3062 3.947196 TGTCACATTGGGTTATGCAGATC 59.053 43.478 0.00 0.00 0.00 2.75
2766 3063 3.949754 CTGTCACATTGGGTTATGCAGAT 59.050 43.478 0.00 0.00 0.00 2.90
2767 3064 3.244875 ACTGTCACATTGGGTTATGCAGA 60.245 43.478 0.00 0.00 0.00 4.26
2768 3065 3.084039 ACTGTCACATTGGGTTATGCAG 58.916 45.455 0.00 0.00 0.00 4.41
2769 3066 3.153369 ACTGTCACATTGGGTTATGCA 57.847 42.857 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.