Multiple sequence alignment - TraesCS7B01G057500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G057500 chr7B 100.000 2759 0 0 1 2759 59922332 59925090 0.000000e+00 5096.0
1 TraesCS7B01G057500 chr7B 95.365 863 27 3 807 1659 60372353 60373212 0.000000e+00 1360.0
2 TraesCS7B01G057500 chr7B 90.943 530 40 2 176 705 645150147 645150668 0.000000e+00 706.0
3 TraesCS7B01G057500 chr7B 90.233 430 29 3 105 533 60350745 60351162 1.440000e-152 549.0
4 TraesCS7B01G057500 chr7B 89.209 278 13 8 530 807 60365838 60366098 5.700000e-87 331.0
5 TraesCS7B01G057500 chr7B 79.612 206 36 6 1651 1853 59925489 59925287 2.860000e-30 143.0
6 TraesCS7B01G057500 chr7B 93.651 63 4 0 1 63 60350686 60350748 8.130000e-16 95.3
7 TraesCS7B01G057500 chr7A 85.597 1097 100 18 576 1659 709824686 709825737 0.000000e+00 1098.0
8 TraesCS7B01G057500 chr7A 94.865 370 19 0 1290 1659 106954563 106954932 1.840000e-161 579.0
9 TraesCS7B01G057500 chr7A 78.806 335 62 7 996 1324 671219711 671219380 1.660000e-52 217.0
10 TraesCS7B01G057500 chr7D 93.296 537 29 6 2042 2576 126032989 126033520 0.000000e+00 785.0
11 TraesCS7B01G057500 chr7D 90.789 228 11 5 1659 1877 126032779 126033005 2.080000e-76 296.0
12 TraesCS7B01G057500 chr7D 96.552 174 6 0 1877 2050 107863074 107863247 3.480000e-74 289.0
13 TraesCS7B01G057500 chr7D 92.308 182 13 1 2573 2753 126047252 126047433 9.800000e-65 257.0
14 TraesCS7B01G057500 chr6A 95.669 254 10 1 2042 2295 616095586 616095838 9.200000e-110 407.0
15 TraesCS7B01G057500 chr6A 97.537 203 5 0 2356 2558 616095832 616096034 5.660000e-92 348.0
16 TraesCS7B01G057500 chr6A 92.766 235 13 2 1644 1877 616095371 616095602 1.220000e-88 337.0
17 TraesCS7B01G057500 chr6A 94.186 172 10 0 2585 2756 616096025 616096196 2.110000e-66 263.0
18 TraesCS7B01G057500 chr5D 96.532 173 6 0 1878 2050 539072648 539072820 1.250000e-73 287.0
19 TraesCS7B01G057500 chr3D 95.977 174 7 0 1877 2050 587946835 587946662 1.620000e-72 283.0
20 TraesCS7B01G057500 chr3D 95.429 175 7 1 1877 2051 428139686 428139859 7.530000e-71 278.0
21 TraesCS7B01G057500 chr6D 95.954 173 7 0 1878 2050 123116546 123116374 5.820000e-72 281.0
22 TraesCS7B01G057500 chr6D 95.480 177 7 1 1878 2053 470664640 470664464 5.820000e-72 281.0
23 TraesCS7B01G057500 chr2D 95.455 176 8 0 1877 2052 62026111 62026286 5.820000e-72 281.0
24 TraesCS7B01G057500 chr2D 77.863 131 15 10 2630 2759 606384029 606383912 4.930000e-08 69.4
25 TraesCS7B01G057500 chr2D 100.000 28 0 0 708 735 629198561 629198534 5.000000e-03 52.8
26 TraesCS7B01G057500 chr1D 95.429 175 8 0 1878 2052 297155804 297155978 2.090000e-71 279.0
27 TraesCS7B01G057500 chr4D 95.402 174 8 0 1877 2050 3846928 3846755 7.530000e-71 278.0
28 TraesCS7B01G057500 chr1B 81.173 324 56 3 996 1315 349512100 349511778 3.530000e-64 255.0
29 TraesCS7B01G057500 chr2B 80.319 188 31 6 1659 1843 596805352 596805536 1.330000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G057500 chr7B 59922332 59925090 2758 False 5096.00 5096 100.0000 1 2759 1 chr7B.!!$F1 2758
1 TraesCS7B01G057500 chr7B 60372353 60373212 859 False 1360.00 1360 95.3650 807 1659 1 chr7B.!!$F3 852
2 TraesCS7B01G057500 chr7B 645150147 645150668 521 False 706.00 706 90.9430 176 705 1 chr7B.!!$F4 529
3 TraesCS7B01G057500 chr7A 709824686 709825737 1051 False 1098.00 1098 85.5970 576 1659 1 chr7A.!!$F2 1083
4 TraesCS7B01G057500 chr7D 126032779 126033520 741 False 540.50 785 92.0425 1659 2576 2 chr7D.!!$F3 917
5 TraesCS7B01G057500 chr6A 616095371 616096196 825 False 338.75 407 95.0395 1644 2756 4 chr6A.!!$F1 1112

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 346 0.034337 GTACTGGGAGCGACACCAAA 59.966 55.0 0.0 0.0 36.09 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2078 0.03601 CTTCAAGTGCCGATGGGAGT 60.036 55.0 0.0 0.0 34.06 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.075858 CTTTGATAATTTGCAAGGCCAGA 57.924 39.130 5.01 0.00 0.00 3.86
23 24 4.454728 TTGATAATTTGCAAGGCCAGAC 57.545 40.909 5.01 0.00 0.00 3.51
24 25 3.700538 TGATAATTTGCAAGGCCAGACT 58.299 40.909 5.01 0.00 0.00 3.24
25 26 3.444742 TGATAATTTGCAAGGCCAGACTG 59.555 43.478 5.01 0.00 0.00 3.51
26 27 0.319405 AATTTGCAAGGCCAGACTGC 59.681 50.000 5.01 8.93 0.00 4.40
27 28 0.541296 ATTTGCAAGGCCAGACTGCT 60.541 50.000 5.01 0.00 0.00 4.24
28 29 0.756442 TTTGCAAGGCCAGACTGCTT 60.756 50.000 5.01 0.00 0.00 3.91
29 30 0.756442 TTGCAAGGCCAGACTGCTTT 60.756 50.000 5.01 0.00 0.00 3.51
30 31 0.756442 TGCAAGGCCAGACTGCTTTT 60.756 50.000 5.01 0.00 0.00 2.27
31 32 0.390492 GCAAGGCCAGACTGCTTTTT 59.610 50.000 5.01 0.00 0.00 1.94
32 33 1.870993 GCAAGGCCAGACTGCTTTTTG 60.871 52.381 5.01 0.00 0.00 2.44
33 34 1.043022 AAGGCCAGACTGCTTTTTGG 58.957 50.000 5.01 0.00 0.00 3.28
38 39 1.815003 CCAGACTGCTTTTTGGCTAGG 59.185 52.381 0.00 0.00 0.00 3.02
39 40 2.553028 CCAGACTGCTTTTTGGCTAGGA 60.553 50.000 0.00 0.00 0.00 2.94
40 41 3.350833 CAGACTGCTTTTTGGCTAGGAT 58.649 45.455 0.00 0.00 0.00 3.24
41 42 3.376546 CAGACTGCTTTTTGGCTAGGATC 59.623 47.826 0.00 0.00 0.00 3.36
42 43 3.265479 AGACTGCTTTTTGGCTAGGATCT 59.735 43.478 0.00 0.00 0.00 2.75
43 44 3.350833 ACTGCTTTTTGGCTAGGATCTG 58.649 45.455 0.00 0.00 0.00 2.90
44 45 2.686915 CTGCTTTTTGGCTAGGATCTGG 59.313 50.000 0.00 0.00 0.00 3.86
45 46 2.041620 TGCTTTTTGGCTAGGATCTGGT 59.958 45.455 0.00 0.00 0.00 4.00
46 47 2.424956 GCTTTTTGGCTAGGATCTGGTG 59.575 50.000 0.00 0.00 0.00 4.17
47 48 3.690460 CTTTTTGGCTAGGATCTGGTGT 58.310 45.455 0.00 0.00 0.00 4.16
48 49 4.843728 CTTTTTGGCTAGGATCTGGTGTA 58.156 43.478 0.00 0.00 0.00 2.90
49 50 4.919774 TTTTGGCTAGGATCTGGTGTAA 57.080 40.909 0.00 0.00 0.00 2.41
50 51 5.450818 TTTTGGCTAGGATCTGGTGTAAT 57.549 39.130 0.00 0.00 0.00 1.89
51 52 4.422073 TTGGCTAGGATCTGGTGTAATG 57.578 45.455 0.00 0.00 0.00 1.90
52 53 3.653164 TGGCTAGGATCTGGTGTAATGA 58.347 45.455 0.00 0.00 0.00 2.57
53 54 4.037222 TGGCTAGGATCTGGTGTAATGAA 58.963 43.478 0.00 0.00 0.00 2.57
54 55 4.101585 TGGCTAGGATCTGGTGTAATGAAG 59.898 45.833 0.00 0.00 0.00 3.02
55 56 4.503991 GGCTAGGATCTGGTGTAATGAAGG 60.504 50.000 0.00 0.00 0.00 3.46
56 57 4.101741 GCTAGGATCTGGTGTAATGAAGGT 59.898 45.833 0.00 0.00 0.00 3.50
57 58 4.762289 AGGATCTGGTGTAATGAAGGTC 57.238 45.455 0.00 0.00 0.00 3.85
58 59 3.456277 AGGATCTGGTGTAATGAAGGTCC 59.544 47.826 0.00 0.00 39.79 4.46
59 60 3.456277 GGATCTGGTGTAATGAAGGTCCT 59.544 47.826 0.00 0.00 37.04 3.85
60 61 4.654262 GGATCTGGTGTAATGAAGGTCCTA 59.346 45.833 0.00 0.00 37.04 2.94
61 62 5.130477 GGATCTGGTGTAATGAAGGTCCTAA 59.870 44.000 0.00 0.00 37.04 2.69
62 63 6.352737 GGATCTGGTGTAATGAAGGTCCTAAA 60.353 42.308 0.00 0.00 37.04 1.85
63 64 6.636454 TCTGGTGTAATGAAGGTCCTAAAT 57.364 37.500 0.00 0.00 0.00 1.40
64 65 7.743116 TCTGGTGTAATGAAGGTCCTAAATA 57.257 36.000 0.00 0.00 0.00 1.40
65 66 8.331931 TCTGGTGTAATGAAGGTCCTAAATAT 57.668 34.615 0.00 0.00 0.00 1.28
66 67 8.778059 TCTGGTGTAATGAAGGTCCTAAATATT 58.222 33.333 0.00 0.00 0.00 1.28
67 68 9.408648 CTGGTGTAATGAAGGTCCTAAATATTT 57.591 33.333 5.89 5.89 0.00 1.40
68 69 9.762381 TGGTGTAATGAAGGTCCTAAATATTTT 57.238 29.630 5.91 0.00 0.00 1.82
70 71 9.931210 GTGTAATGAAGGTCCTAAATATTTTCG 57.069 33.333 5.91 0.00 0.00 3.46
71 72 9.893634 TGTAATGAAGGTCCTAAATATTTTCGA 57.106 29.630 5.91 0.00 0.00 3.71
75 76 9.681062 ATGAAGGTCCTAAATATTTTCGAAAGA 57.319 29.630 10.98 3.90 39.20 2.52
76 77 9.162764 TGAAGGTCCTAAATATTTTCGAAAGAG 57.837 33.333 10.98 3.46 43.69 2.85
77 78 9.379791 GAAGGTCCTAAATATTTTCGAAAGAGA 57.620 33.333 10.98 0.00 43.69 3.10
78 79 9.734984 AAGGTCCTAAATATTTTCGAAAGAGAA 57.265 29.630 10.98 0.00 43.69 2.87
79 80 9.907229 AGGTCCTAAATATTTTCGAAAGAGAAT 57.093 29.630 10.98 4.44 45.55 2.40
80 81 9.937175 GGTCCTAAATATTTTCGAAAGAGAATG 57.063 33.333 10.98 1.05 43.74 2.67
137 138 8.915871 TTATTTCATAAAAAGAGCTCATGTGC 57.084 30.769 17.77 11.79 0.00 4.57
138 139 5.963176 TTCATAAAAAGAGCTCATGTGCA 57.037 34.783 20.92 0.00 34.99 4.57
139 140 5.556355 TCATAAAAAGAGCTCATGTGCAG 57.444 39.130 20.92 0.83 34.99 4.41
140 141 5.005740 TCATAAAAAGAGCTCATGTGCAGT 58.994 37.500 20.92 5.38 34.99 4.40
141 142 6.172630 TCATAAAAAGAGCTCATGTGCAGTA 58.827 36.000 20.92 4.94 34.99 2.74
142 143 6.314648 TCATAAAAAGAGCTCATGTGCAGTAG 59.685 38.462 20.92 0.00 34.99 2.57
143 144 3.692257 AAAGAGCTCATGTGCAGTAGT 57.308 42.857 20.92 0.32 34.99 2.73
144 145 4.808414 AAAGAGCTCATGTGCAGTAGTA 57.192 40.909 20.92 0.00 34.99 1.82
145 146 4.383850 AAGAGCTCATGTGCAGTAGTAG 57.616 45.455 20.92 0.00 34.99 2.57
146 147 2.692557 AGAGCTCATGTGCAGTAGTAGG 59.307 50.000 20.92 0.00 34.99 3.18
147 148 2.690497 GAGCTCATGTGCAGTAGTAGGA 59.310 50.000 20.92 0.00 34.99 2.94
148 149 2.692557 AGCTCATGTGCAGTAGTAGGAG 59.307 50.000 20.92 0.00 34.99 3.69
149 150 2.223923 GCTCATGTGCAGTAGTAGGAGG 60.224 54.545 14.66 0.00 0.00 4.30
150 151 3.291584 CTCATGTGCAGTAGTAGGAGGA 58.708 50.000 0.00 0.00 0.00 3.71
151 152 3.291584 TCATGTGCAGTAGTAGGAGGAG 58.708 50.000 0.00 0.00 0.00 3.69
152 153 2.145397 TGTGCAGTAGTAGGAGGAGG 57.855 55.000 0.00 0.00 0.00 4.30
153 154 1.639108 TGTGCAGTAGTAGGAGGAGGA 59.361 52.381 0.00 0.00 0.00 3.71
154 155 2.042569 TGTGCAGTAGTAGGAGGAGGAA 59.957 50.000 0.00 0.00 0.00 3.36
155 156 2.427812 GTGCAGTAGTAGGAGGAGGAAC 59.572 54.545 0.00 0.00 0.00 3.62
156 157 2.042569 TGCAGTAGTAGGAGGAGGAACA 59.957 50.000 0.00 0.00 0.00 3.18
157 158 2.691011 GCAGTAGTAGGAGGAGGAACAG 59.309 54.545 0.00 0.00 0.00 3.16
158 159 3.292460 CAGTAGTAGGAGGAGGAACAGG 58.708 54.545 0.00 0.00 0.00 4.00
159 160 3.053544 CAGTAGTAGGAGGAGGAACAGGA 60.054 52.174 0.00 0.00 0.00 3.86
160 161 2.838637 AGTAGGAGGAGGAACAGGAG 57.161 55.000 0.00 0.00 0.00 3.69
161 162 1.289530 AGTAGGAGGAGGAACAGGAGG 59.710 57.143 0.00 0.00 0.00 4.30
162 163 1.288335 GTAGGAGGAGGAACAGGAGGA 59.712 57.143 0.00 0.00 0.00 3.71
163 164 0.338120 AGGAGGAGGAACAGGAGGAG 59.662 60.000 0.00 0.00 0.00 3.69
164 165 1.334384 GGAGGAGGAACAGGAGGAGC 61.334 65.000 0.00 0.00 0.00 4.70
165 166 1.306568 AGGAGGAACAGGAGGAGCC 60.307 63.158 0.00 0.00 0.00 4.70
289 290 3.762288 TGCTAGTCAACGTTCTGTCCTAT 59.238 43.478 0.00 0.00 0.00 2.57
302 303 3.895656 TCTGTCCTATGAAGGGGATTACG 59.104 47.826 0.00 0.00 43.84 3.18
303 304 3.895656 CTGTCCTATGAAGGGGATTACGA 59.104 47.826 0.00 0.00 43.84 3.43
324 325 1.511305 GCGTGCAGAGCAGGTACTA 59.489 57.895 12.46 0.00 44.79 1.82
325 326 0.526524 GCGTGCAGAGCAGGTACTAG 60.527 60.000 12.46 0.00 44.79 2.57
326 327 0.101399 CGTGCAGAGCAGGTACTAGG 59.899 60.000 3.72 0.00 40.08 3.02
327 328 1.187087 GTGCAGAGCAGGTACTAGGT 58.813 55.000 0.00 0.00 40.08 3.08
328 329 2.376109 GTGCAGAGCAGGTACTAGGTA 58.624 52.381 0.00 0.00 40.08 3.08
329 330 2.099427 GTGCAGAGCAGGTACTAGGTAC 59.901 54.545 0.00 0.00 40.08 3.34
330 331 2.025226 TGCAGAGCAGGTACTAGGTACT 60.025 50.000 7.60 0.00 36.02 2.73
345 346 0.034337 GTACTGGGAGCGACACCAAA 59.966 55.000 0.00 0.00 36.09 3.28
352 353 1.065709 GGAGCGACACCAAATTAGGGA 60.066 52.381 3.24 0.00 0.00 4.20
360 361 6.349860 GCGACACCAAATTAGGGACTTTAATT 60.350 38.462 3.24 0.00 41.75 1.40
370 371 7.843490 TTAGGGACTTTAATTGATCTGTTCG 57.157 36.000 0.00 0.00 41.75 3.95
371 372 6.049955 AGGGACTTTAATTGATCTGTTCGA 57.950 37.500 0.00 0.00 27.25 3.71
384 385 2.050691 CTGTTCGAAACAAATTGGCCG 58.949 47.619 0.00 0.00 41.61 6.13
392 393 2.524569 ACAAATTGGCCGGTTTTCTG 57.475 45.000 1.90 0.00 0.00 3.02
396 397 1.241315 ATTGGCCGGTTTTCTGTCCG 61.241 55.000 1.90 0.00 45.42 4.79
408 409 8.084073 CCGGTTTTCTGTCCGTATCTATAATAA 58.916 37.037 0.00 0.00 44.51 1.40
466 467 2.627515 TGCAATCTATCCACCTCAGC 57.372 50.000 0.00 0.00 0.00 4.26
468 469 2.239402 TGCAATCTATCCACCTCAGCAA 59.761 45.455 0.00 0.00 0.00 3.91
472 473 3.616956 TCTATCCACCTCAGCAAACTG 57.383 47.619 0.00 0.00 45.95 3.16
473 474 2.012673 CTATCCACCTCAGCAAACTGC 58.987 52.381 0.00 0.00 44.10 4.40
478 479 1.103398 ACCTCAGCAAACTGCCACAC 61.103 55.000 0.00 0.00 46.52 3.82
480 481 2.121564 CTCAGCAAACTGCCACACCG 62.122 60.000 0.00 0.00 46.52 4.94
498 499 3.055458 CACCGGCCATTATTTTCCCTTTT 60.055 43.478 0.00 0.00 0.00 2.27
517 518 6.257630 CCCTTTTAACCAATTTTATCGGCATG 59.742 38.462 0.00 0.00 0.00 4.06
525 526 6.127479 ACCAATTTTATCGGCATGTTATGTGT 60.127 34.615 0.00 0.00 0.00 3.72
567 568 2.564062 CCAATGGTCTCAGTTGGCAAAT 59.436 45.455 0.00 0.00 36.33 2.32
569 570 4.142315 CCAATGGTCTCAGTTGGCAAATAG 60.142 45.833 0.00 0.00 36.33 1.73
613 614 2.743636 TGTCTCCTCGAATCCAACAC 57.256 50.000 0.00 0.00 0.00 3.32
646 647 5.706916 CTGGACAGAATGAAAACAATCCAG 58.293 41.667 2.75 2.75 44.33 3.86
669 671 4.787563 GCGAAAGAGTACCATGCATGAATG 60.788 45.833 28.31 13.75 0.00 2.67
696 698 1.217244 GGGATGTTCGCGTACACCT 59.783 57.895 21.05 6.18 0.00 4.00
703 705 0.889994 TTCGCGTACACCTACCATGT 59.110 50.000 5.77 0.00 0.00 3.21
705 707 1.672363 TCGCGTACACCTACCATGTAG 59.328 52.381 5.77 0.00 33.26 2.74
707 709 2.026641 GCGTACACCTACCATGTAGGA 58.973 52.381 23.50 2.23 39.61 2.94
709 711 3.119029 GCGTACACCTACCATGTAGGAAA 60.119 47.826 23.50 8.15 39.61 3.13
710 712 4.679662 CGTACACCTACCATGTAGGAAAG 58.320 47.826 23.50 15.37 39.61 2.62
711 713 3.629142 ACACCTACCATGTAGGAAAGC 57.371 47.619 23.50 0.00 41.22 3.51
712 714 2.238898 ACACCTACCATGTAGGAAAGCC 59.761 50.000 23.50 0.00 41.22 4.35
714 716 3.709653 CACCTACCATGTAGGAAAGCCTA 59.290 47.826 23.50 0.00 44.74 3.93
729 731 3.059352 AGCCTACGCTTTCTCAAATGT 57.941 42.857 0.00 0.00 45.55 2.71
730 732 3.412386 AGCCTACGCTTTCTCAAATGTT 58.588 40.909 0.00 0.00 45.55 2.71
731 733 4.575885 AGCCTACGCTTTCTCAAATGTTA 58.424 39.130 0.00 0.00 45.55 2.41
732 734 5.001232 AGCCTACGCTTTCTCAAATGTTAA 58.999 37.500 0.00 0.00 45.55 2.01
733 735 5.086727 GCCTACGCTTTCTCAAATGTTAAC 58.913 41.667 0.00 0.00 0.00 2.01
750 752 2.922740 AACCTCTTCCGCAGTTAACA 57.077 45.000 8.61 0.00 0.00 2.41
751 753 2.922740 ACCTCTTCCGCAGTTAACAA 57.077 45.000 8.61 0.00 0.00 2.83
778 780 3.792047 CATGCTGCGTCACCCGTG 61.792 66.667 0.00 0.00 39.32 4.94
779 781 4.002506 ATGCTGCGTCACCCGTGA 62.003 61.111 0.00 0.00 39.32 4.35
780 782 3.315142 ATGCTGCGTCACCCGTGAT 62.315 57.895 0.03 0.00 42.18 3.06
781 783 3.490759 GCTGCGTCACCCGTGATG 61.491 66.667 11.88 11.88 46.52 3.07
785 787 2.356913 CGTCACCCGTGATGCACA 60.357 61.111 4.20 0.00 42.18 4.57
786 788 1.741401 CGTCACCCGTGATGCACAT 60.741 57.895 4.20 0.00 42.18 3.21
787 789 0.459411 CGTCACCCGTGATGCACATA 60.459 55.000 4.20 0.00 42.18 2.29
788 790 1.290203 GTCACCCGTGATGCACATAG 58.710 55.000 0.03 0.00 42.18 2.23
800 802 4.959839 TGATGCACATAGTAGACCCACTAA 59.040 41.667 0.00 0.00 34.77 2.24
801 803 5.602561 TGATGCACATAGTAGACCCACTAAT 59.397 40.000 0.00 0.00 34.77 1.73
804 806 8.895141 ATGCACATAGTAGACCCACTAATATA 57.105 34.615 0.00 0.00 39.38 0.86
925 932 4.393371 GGAGGCTACACTTTCAGATTGAAC 59.607 45.833 0.00 0.00 35.89 3.18
955 962 7.520451 AGAACACATACACAAGACAGTAGTA 57.480 36.000 0.00 0.00 0.00 1.82
992 999 0.532573 AGCAAGCGATCGAAGAGGAA 59.467 50.000 21.57 0.00 43.63 3.36
1008 1018 1.073923 AGGAAGAAAACGATGGCTGGT 59.926 47.619 0.00 0.00 0.00 4.00
1299 1322 3.482783 GCCGTCACTCGCTTCTGC 61.483 66.667 0.00 0.00 38.35 4.26
1318 1341 2.352001 CCGCCTATGTCGACGACG 60.352 66.667 22.06 9.65 34.95 5.12
1548 1574 0.738975 ACGTGATGGTCATCGACGAT 59.261 50.000 26.23 4.05 40.89 3.73
1699 1729 3.125316 CACTTTGAATACGTGGCTTCTCC 59.875 47.826 0.00 0.00 0.00 3.71
1726 1756 2.553028 GCCACTCCCAAGATTGTCTTCA 60.553 50.000 0.00 0.00 33.78 3.02
1750 1780 0.536687 ATTGCCATCCAGCTCATCGG 60.537 55.000 0.00 0.00 0.00 4.18
1795 1825 6.974932 TCTCTCCTTTCATCGATTTCTTTG 57.025 37.500 0.00 0.00 0.00 2.77
1798 1828 6.467677 TCTCCTTTCATCGATTTCTTTGTCT 58.532 36.000 0.00 0.00 0.00 3.41
1856 1890 2.564062 CCCCTGAGACAAAGGTACGTAA 59.436 50.000 0.00 0.00 32.45 3.18
1857 1891 3.582780 CCCTGAGACAAAGGTACGTAAC 58.417 50.000 1.22 1.22 32.45 2.50
1871 1905 0.937304 CGTAACTGGGCATCCAATCG 59.063 55.000 0.00 0.00 43.51 3.34
1872 1906 1.308998 GTAACTGGGCATCCAATCGG 58.691 55.000 0.00 0.00 43.51 4.18
1873 1907 0.465460 TAACTGGGCATCCAATCGGC 60.465 55.000 0.00 0.00 43.51 5.54
1874 1908 2.124193 CTGGGCATCCAATCGGCA 60.124 61.111 0.00 0.00 43.51 5.69
1875 1909 2.440065 TGGGCATCCAATCGGCAC 60.440 61.111 0.00 0.00 40.73 5.01
1876 1910 2.124151 GGGCATCCAATCGGCACT 60.124 61.111 0.00 0.00 0.00 4.40
1877 1911 2.189499 GGGCATCCAATCGGCACTC 61.189 63.158 0.00 0.00 0.00 3.51
1878 1912 1.451927 GGCATCCAATCGGCACTCA 60.452 57.895 0.00 0.00 0.00 3.41
1879 1913 1.442526 GGCATCCAATCGGCACTCAG 61.443 60.000 0.00 0.00 0.00 3.35
1880 1914 0.745845 GCATCCAATCGGCACTCAGT 60.746 55.000 0.00 0.00 0.00 3.41
1881 1915 1.742761 CATCCAATCGGCACTCAGTT 58.257 50.000 0.00 0.00 0.00 3.16
1882 1916 2.086869 CATCCAATCGGCACTCAGTTT 58.913 47.619 0.00 0.00 0.00 2.66
1883 1917 2.270352 TCCAATCGGCACTCAGTTTT 57.730 45.000 0.00 0.00 0.00 2.43
1884 1918 2.582052 TCCAATCGGCACTCAGTTTTT 58.418 42.857 0.00 0.00 0.00 1.94
1885 1919 2.552315 TCCAATCGGCACTCAGTTTTTC 59.448 45.455 0.00 0.00 0.00 2.29
1886 1920 2.554032 CCAATCGGCACTCAGTTTTTCT 59.446 45.455 0.00 0.00 0.00 2.52
1887 1921 3.751175 CCAATCGGCACTCAGTTTTTCTA 59.249 43.478 0.00 0.00 0.00 2.10
1888 1922 4.142816 CCAATCGGCACTCAGTTTTTCTAG 60.143 45.833 0.00 0.00 0.00 2.43
1889 1923 4.537135 ATCGGCACTCAGTTTTTCTAGA 57.463 40.909 0.00 0.00 0.00 2.43
1890 1924 4.330944 TCGGCACTCAGTTTTTCTAGAA 57.669 40.909 0.00 0.00 0.00 2.10
1891 1925 4.056050 TCGGCACTCAGTTTTTCTAGAAC 58.944 43.478 4.18 0.00 0.00 3.01
1892 1926 4.058817 CGGCACTCAGTTTTTCTAGAACT 58.941 43.478 4.18 0.00 37.82 3.01
1893 1927 4.150804 CGGCACTCAGTTTTTCTAGAACTC 59.849 45.833 4.18 0.00 35.26 3.01
1894 1928 5.057149 GGCACTCAGTTTTTCTAGAACTCA 58.943 41.667 4.18 0.00 35.26 3.41
1895 1929 5.703130 GGCACTCAGTTTTTCTAGAACTCAT 59.297 40.000 4.18 0.00 35.26 2.90
1896 1930 6.128418 GGCACTCAGTTTTTCTAGAACTCATC 60.128 42.308 4.18 0.00 35.26 2.92
1897 1931 6.648725 GCACTCAGTTTTTCTAGAACTCATCT 59.351 38.462 4.18 0.00 42.48 2.90
1898 1932 7.815068 GCACTCAGTTTTTCTAGAACTCATCTA 59.185 37.037 4.18 0.00 39.71 1.98
1899 1933 9.698309 CACTCAGTTTTTCTAGAACTCATCTAA 57.302 33.333 4.18 0.00 40.12 2.10
1926 1960 8.908786 TGAGATATAATTTGGTCTCATTCACC 57.091 34.615 10.50 0.00 41.40 4.02
1927 1961 8.717717 TGAGATATAATTTGGTCTCATTCACCT 58.282 33.333 10.50 0.00 41.40 4.00
1928 1962 9.566432 GAGATATAATTTGGTCTCATTCACCTT 57.434 33.333 8.11 0.00 37.60 3.50
1929 1963 9.927081 AGATATAATTTGGTCTCATTCACCTTT 57.073 29.630 0.00 0.00 34.66 3.11
1935 1969 7.391148 TTTGGTCTCATTCACCTTTTATAGC 57.609 36.000 0.00 0.00 34.66 2.97
1936 1970 5.437060 TGGTCTCATTCACCTTTTATAGCC 58.563 41.667 0.00 0.00 34.66 3.93
1937 1971 5.045213 TGGTCTCATTCACCTTTTATAGCCA 60.045 40.000 0.00 0.00 34.66 4.75
1938 1972 6.064717 GGTCTCATTCACCTTTTATAGCCAT 58.935 40.000 0.00 0.00 0.00 4.40
1939 1973 6.547510 GGTCTCATTCACCTTTTATAGCCATT 59.452 38.462 0.00 0.00 0.00 3.16
1940 1974 7.420800 GTCTCATTCACCTTTTATAGCCATTG 58.579 38.462 0.00 0.00 0.00 2.82
1941 1975 6.547141 TCTCATTCACCTTTTATAGCCATTGG 59.453 38.462 0.00 0.00 0.00 3.16
1942 1976 6.430864 TCATTCACCTTTTATAGCCATTGGA 58.569 36.000 6.95 0.00 0.00 3.53
1943 1977 7.068702 TCATTCACCTTTTATAGCCATTGGAT 58.931 34.615 6.95 1.78 0.00 3.41
1944 1978 6.713762 TTCACCTTTTATAGCCATTGGATG 57.286 37.500 6.95 0.00 0.00 3.51
1945 1979 5.765510 TCACCTTTTATAGCCATTGGATGT 58.234 37.500 6.95 0.10 0.00 3.06
1946 1980 5.593909 TCACCTTTTATAGCCATTGGATGTG 59.406 40.000 6.95 2.95 0.00 3.21
1947 1981 5.593909 CACCTTTTATAGCCATTGGATGTGA 59.406 40.000 6.95 0.00 0.00 3.58
1948 1982 6.266103 CACCTTTTATAGCCATTGGATGTGAT 59.734 38.462 6.95 0.00 0.00 3.06
1949 1983 6.266103 ACCTTTTATAGCCATTGGATGTGATG 59.734 38.462 6.95 0.00 0.00 3.07
1950 1984 6.266103 CCTTTTATAGCCATTGGATGTGATGT 59.734 38.462 6.95 0.00 0.00 3.06
1951 1985 7.201938 CCTTTTATAGCCATTGGATGTGATGTT 60.202 37.037 6.95 0.00 0.00 2.71
1952 1986 8.759481 TTTTATAGCCATTGGATGTGATGTTA 57.241 30.769 6.95 0.00 0.00 2.41
1953 1987 8.938801 TTTATAGCCATTGGATGTGATGTTAT 57.061 30.769 6.95 0.00 0.00 1.89
1956 1990 6.889301 AGCCATTGGATGTGATGTTATAAG 57.111 37.500 6.95 0.00 0.00 1.73
1957 1991 6.604171 AGCCATTGGATGTGATGTTATAAGA 58.396 36.000 6.95 0.00 0.00 2.10
1958 1992 7.236529 AGCCATTGGATGTGATGTTATAAGAT 58.763 34.615 6.95 0.00 0.00 2.40
1959 1993 7.176165 AGCCATTGGATGTGATGTTATAAGATG 59.824 37.037 6.95 0.00 0.00 2.90
1960 1994 7.310664 CCATTGGATGTGATGTTATAAGATGC 58.689 38.462 0.00 0.00 0.00 3.91
1961 1995 6.544038 TTGGATGTGATGTTATAAGATGCG 57.456 37.500 0.00 0.00 0.00 4.73
1962 1996 5.610398 TGGATGTGATGTTATAAGATGCGT 58.390 37.500 0.00 0.00 0.00 5.24
1963 1997 5.466393 TGGATGTGATGTTATAAGATGCGTG 59.534 40.000 0.00 0.00 0.00 5.34
1964 1998 5.466728 GGATGTGATGTTATAAGATGCGTGT 59.533 40.000 0.00 0.00 0.00 4.49
1965 1999 5.717038 TGTGATGTTATAAGATGCGTGTG 57.283 39.130 0.00 0.00 0.00 3.82
1966 2000 5.175127 TGTGATGTTATAAGATGCGTGTGT 58.825 37.500 0.00 0.00 0.00 3.72
1967 2001 5.063312 TGTGATGTTATAAGATGCGTGTGTG 59.937 40.000 0.00 0.00 0.00 3.82
1968 2002 4.033932 TGATGTTATAAGATGCGTGTGTGC 59.966 41.667 0.00 0.00 0.00 4.57
1969 2003 3.595173 TGTTATAAGATGCGTGTGTGCT 58.405 40.909 0.00 0.00 35.36 4.40
1970 2004 3.370672 TGTTATAAGATGCGTGTGTGCTG 59.629 43.478 0.00 0.00 35.36 4.41
1971 2005 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
1972 2006 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
1973 2007 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
1974 2008 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
1975 2009 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
1976 2010 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
1977 2011 3.337889 CGTGTGTGCTGACGTGGG 61.338 66.667 0.00 0.00 0.00 4.61
1978 2012 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
1979 2013 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
1980 2014 1.817520 TGTGTGCTGACGTGGGTTG 60.818 57.895 0.00 0.00 0.00 3.77
1981 2015 1.817941 GTGTGCTGACGTGGGTTGT 60.818 57.895 0.00 0.00 0.00 3.32
1982 2016 0.531090 GTGTGCTGACGTGGGTTGTA 60.531 55.000 0.00 0.00 0.00 2.41
1983 2017 0.394938 TGTGCTGACGTGGGTTGTAT 59.605 50.000 0.00 0.00 0.00 2.29
1984 2018 1.076332 GTGCTGACGTGGGTTGTATC 58.924 55.000 0.00 0.00 0.00 2.24
1985 2019 0.973632 TGCTGACGTGGGTTGTATCT 59.026 50.000 0.00 0.00 0.00 1.98
1986 2020 1.337728 TGCTGACGTGGGTTGTATCTG 60.338 52.381 0.00 0.00 0.00 2.90
1987 2021 1.337823 GCTGACGTGGGTTGTATCTGT 60.338 52.381 0.00 0.00 0.00 3.41
1988 2022 2.870435 GCTGACGTGGGTTGTATCTGTT 60.870 50.000 0.00 0.00 0.00 3.16
1989 2023 3.399330 CTGACGTGGGTTGTATCTGTTT 58.601 45.455 0.00 0.00 0.00 2.83
1990 2024 3.811083 TGACGTGGGTTGTATCTGTTTT 58.189 40.909 0.00 0.00 0.00 2.43
1991 2025 4.200874 TGACGTGGGTTGTATCTGTTTTT 58.799 39.130 0.00 0.00 0.00 1.94
1992 2026 5.366460 TGACGTGGGTTGTATCTGTTTTTA 58.634 37.500 0.00 0.00 0.00 1.52
1993 2027 5.998981 TGACGTGGGTTGTATCTGTTTTTAT 59.001 36.000 0.00 0.00 0.00 1.40
1994 2028 6.487331 TGACGTGGGTTGTATCTGTTTTTATT 59.513 34.615 0.00 0.00 0.00 1.40
1995 2029 7.013464 TGACGTGGGTTGTATCTGTTTTTATTT 59.987 33.333 0.00 0.00 0.00 1.40
1996 2030 7.718525 ACGTGGGTTGTATCTGTTTTTATTTT 58.281 30.769 0.00 0.00 0.00 1.82
1997 2031 7.863877 ACGTGGGTTGTATCTGTTTTTATTTTC 59.136 33.333 0.00 0.00 0.00 2.29
1998 2032 7.863375 CGTGGGTTGTATCTGTTTTTATTTTCA 59.137 33.333 0.00 0.00 0.00 2.69
1999 2033 9.535878 GTGGGTTGTATCTGTTTTTATTTTCAA 57.464 29.630 0.00 0.00 0.00 2.69
2000 2034 9.757227 TGGGTTGTATCTGTTTTTATTTTCAAG 57.243 29.630 0.00 0.00 0.00 3.02
2001 2035 9.203421 GGGTTGTATCTGTTTTTATTTTCAAGG 57.797 33.333 0.00 0.00 0.00 3.61
2002 2036 9.758651 GGTTGTATCTGTTTTTATTTTCAAGGT 57.241 29.630 0.00 0.00 0.00 3.50
2046 2080 6.798427 TCATCTAAATGAGTTCTAGGCACT 57.202 37.500 0.00 0.00 38.74 4.40
2047 2081 6.810911 TCATCTAAATGAGTTCTAGGCACTC 58.189 40.000 13.40 13.40 37.09 3.51
2048 2082 5.599999 TCTAAATGAGTTCTAGGCACTCC 57.400 43.478 16.20 4.17 40.12 3.85
2049 2083 3.636153 AAATGAGTTCTAGGCACTCCC 57.364 47.619 16.20 0.00 40.12 4.30
2050 2084 2.254152 ATGAGTTCTAGGCACTCCCA 57.746 50.000 16.20 4.50 40.12 4.37
2051 2085 2.254152 TGAGTTCTAGGCACTCCCAT 57.746 50.000 16.20 0.00 40.12 4.00
2052 2086 2.111384 TGAGTTCTAGGCACTCCCATC 58.889 52.381 16.20 0.00 40.12 3.51
2069 2103 2.257409 ATCGGCACTTGAAGCGGGAT 62.257 55.000 0.00 0.00 33.68 3.85
2200 2234 0.527600 GATGACACGTGCTGCGGATA 60.528 55.000 17.22 0.00 46.52 2.59
2291 2325 0.248661 CCGATCACCTAGACGCTGTG 60.249 60.000 0.00 0.00 0.00 3.66
2292 2326 0.452184 CGATCACCTAGACGCTGTGT 59.548 55.000 0.00 0.00 0.00 3.72
2293 2327 1.795525 CGATCACCTAGACGCTGTGTG 60.796 57.143 0.00 0.00 0.00 3.82
2294 2328 0.108615 ATCACCTAGACGCTGTGTGC 60.109 55.000 0.00 0.00 38.57 4.57
2295 2329 1.179174 TCACCTAGACGCTGTGTGCT 61.179 55.000 0.00 0.00 40.11 4.40
2296 2330 0.526211 CACCTAGACGCTGTGTGCTA 59.474 55.000 0.00 0.00 40.11 3.49
2297 2331 1.135139 CACCTAGACGCTGTGTGCTAT 59.865 52.381 0.00 0.00 40.11 2.97
2298 2332 1.135139 ACCTAGACGCTGTGTGCTATG 59.865 52.381 0.00 1.02 40.11 2.23
2299 2333 1.135139 CCTAGACGCTGTGTGCTATGT 59.865 52.381 0.00 0.00 40.11 2.29
2300 2334 2.357952 CCTAGACGCTGTGTGCTATGTA 59.642 50.000 0.00 0.00 40.11 2.29
2301 2335 3.004839 CCTAGACGCTGTGTGCTATGTAT 59.995 47.826 0.00 0.00 40.11 2.29
2302 2336 2.814269 AGACGCTGTGTGCTATGTATG 58.186 47.619 0.00 0.00 40.11 2.39
2303 2337 1.258982 GACGCTGTGTGCTATGTATGC 59.741 52.381 0.00 0.00 40.11 3.14
2304 2338 0.583438 CGCTGTGTGCTATGTATGCC 59.417 55.000 0.00 0.00 40.11 4.40
2305 2339 1.807755 CGCTGTGTGCTATGTATGCCT 60.808 52.381 0.00 0.00 40.11 4.75
2306 2340 1.600957 GCTGTGTGCTATGTATGCCTG 59.399 52.381 0.00 0.00 38.95 4.85
2307 2341 2.216046 CTGTGTGCTATGTATGCCTGG 58.784 52.381 0.00 0.00 0.00 4.45
2308 2342 1.134128 TGTGTGCTATGTATGCCTGGG 60.134 52.381 0.00 0.00 0.00 4.45
2309 2343 0.179020 TGTGCTATGTATGCCTGGGC 60.179 55.000 4.43 4.43 42.35 5.36
2326 2360 3.629858 GCATGTGGCCGAATCTTTC 57.370 52.632 0.00 0.00 36.11 2.62
2327 2361 1.098050 GCATGTGGCCGAATCTTTCT 58.902 50.000 0.00 0.00 36.11 2.52
2328 2362 1.202222 GCATGTGGCCGAATCTTTCTG 60.202 52.381 0.00 0.00 36.11 3.02
2329 2363 1.402968 CATGTGGCCGAATCTTTCTGG 59.597 52.381 0.00 0.00 0.00 3.86
2330 2364 0.322456 TGTGGCCGAATCTTTCTGGG 60.322 55.000 0.00 0.00 0.00 4.45
2331 2365 1.378514 TGGCCGAATCTTTCTGGGC 60.379 57.895 0.00 13.59 43.65 5.36
2332 2366 2.472909 GGCCGAATCTTTCTGGGCG 61.473 63.158 0.00 0.00 38.39 6.13
2333 2367 2.472909 GCCGAATCTTTCTGGGCGG 61.473 63.158 0.00 0.00 41.51 6.13
2334 2368 1.078426 CCGAATCTTTCTGGGCGGT 60.078 57.895 0.00 0.00 34.45 5.68
2335 2369 0.177141 CCGAATCTTTCTGGGCGGTA 59.823 55.000 0.00 0.00 34.45 4.02
2336 2370 1.202651 CCGAATCTTTCTGGGCGGTAT 60.203 52.381 0.00 0.00 34.45 2.73
2337 2371 2.561569 CGAATCTTTCTGGGCGGTATT 58.438 47.619 0.00 0.00 0.00 1.89
2338 2372 3.493699 CCGAATCTTTCTGGGCGGTATTA 60.494 47.826 0.00 0.00 34.45 0.98
2339 2373 4.315803 CGAATCTTTCTGGGCGGTATTAT 58.684 43.478 0.00 0.00 0.00 1.28
2340 2374 4.152402 CGAATCTTTCTGGGCGGTATTATG 59.848 45.833 0.00 0.00 0.00 1.90
2341 2375 2.846193 TCTTTCTGGGCGGTATTATGC 58.154 47.619 0.00 0.00 0.00 3.14
2348 2382 3.748021 GCGGTATTATGCCTTTCGC 57.252 52.632 0.00 0.00 38.31 4.70
2349 2383 1.226746 GCGGTATTATGCCTTTCGCT 58.773 50.000 0.00 0.00 38.82 4.93
2350 2384 1.602377 GCGGTATTATGCCTTTCGCTT 59.398 47.619 0.00 0.00 38.82 4.68
2351 2385 2.602217 GCGGTATTATGCCTTTCGCTTG 60.602 50.000 0.00 0.00 38.82 4.01
2352 2386 2.602217 CGGTATTATGCCTTTCGCTTGC 60.602 50.000 0.00 0.00 38.78 4.01
2353 2387 2.618709 GGTATTATGCCTTTCGCTTGCT 59.381 45.455 0.00 0.00 38.78 3.91
2354 2388 3.066760 GGTATTATGCCTTTCGCTTGCTT 59.933 43.478 0.00 0.00 38.78 3.91
2355 2389 3.874392 ATTATGCCTTTCGCTTGCTTT 57.126 38.095 0.00 0.00 38.78 3.51
2356 2390 2.634982 TATGCCTTTCGCTTGCTTTG 57.365 45.000 0.00 0.00 38.78 2.77
2357 2391 0.675633 ATGCCTTTCGCTTGCTTTGT 59.324 45.000 0.00 0.00 38.78 2.83
2406 2507 0.380378 TTTGCCAGCTCGTCAACAAC 59.620 50.000 0.00 0.00 0.00 3.32
2460 2561 0.656259 CGACGTATCAGCGGAGAAGA 59.344 55.000 1.14 0.00 35.98 2.87
2576 2677 2.203015 ACCACAGTGTCCGTGCAC 60.203 61.111 6.82 6.82 39.51 4.57
2577 2678 2.972505 CCACAGTGTCCGTGCACC 60.973 66.667 12.15 0.00 40.04 5.01
2578 2679 3.337889 CACAGTGTCCGTGCACCG 61.338 66.667 12.15 4.82 40.04 4.94
2587 2688 4.988598 CGTGCACCGGCCAGTCTT 62.989 66.667 12.15 0.00 40.13 3.01
2588 2689 3.050275 GTGCACCGGCCAGTCTTC 61.050 66.667 5.22 0.00 40.13 2.87
2589 2690 4.329545 TGCACCGGCCAGTCTTCC 62.330 66.667 0.00 0.00 40.13 3.46
2590 2691 4.329545 GCACCGGCCAGTCTTCCA 62.330 66.667 0.00 0.00 0.00 3.53
2591 2692 2.046892 CACCGGCCAGTCTTCCAG 60.047 66.667 0.00 0.00 0.00 3.86
2592 2693 2.203788 ACCGGCCAGTCTTCCAGA 60.204 61.111 0.00 0.00 0.00 3.86
2593 2694 2.266055 CCGGCCAGTCTTCCAGAC 59.734 66.667 2.24 0.00 45.38 3.51
2611 2712 3.809832 CAGACAAAATCTTATCGGCCGAT 59.190 43.478 39.97 39.97 34.41 4.18
2683 2784 4.933064 GAGACGCGCCATCCCTCG 62.933 72.222 5.73 0.00 0.00 4.63
2757 2858 3.917760 GACGGGCTGAGCGGCTAT 61.918 66.667 0.60 0.00 38.46 2.97
2758 2859 4.227134 ACGGGCTGAGCGGCTATG 62.227 66.667 0.60 0.00 38.46 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.866486 GTCTGGCCTTGCAAATTATCAAAG 59.134 41.667 3.32 0.00 0.00 2.77
1 2 4.527816 AGTCTGGCCTTGCAAATTATCAAA 59.472 37.500 3.32 0.00 0.00 2.69
2 3 4.082081 CAGTCTGGCCTTGCAAATTATCAA 60.082 41.667 3.32 0.00 0.00 2.57
3 4 3.444742 CAGTCTGGCCTTGCAAATTATCA 59.555 43.478 3.32 0.00 0.00 2.15
4 5 3.736126 GCAGTCTGGCCTTGCAAATTATC 60.736 47.826 3.32 0.00 37.75 1.75
5 6 2.167075 GCAGTCTGGCCTTGCAAATTAT 59.833 45.455 3.32 0.00 37.75 1.28
7 8 0.319405 GCAGTCTGGCCTTGCAAATT 59.681 50.000 3.32 0.00 37.75 1.82
8 9 0.541296 AGCAGTCTGGCCTTGCAAAT 60.541 50.000 19.22 2.14 40.22 2.32
9 10 0.756442 AAGCAGTCTGGCCTTGCAAA 60.756 50.000 19.22 0.00 40.22 3.68
10 11 0.756442 AAAGCAGTCTGGCCTTGCAA 60.756 50.000 19.22 0.00 40.22 4.08
11 12 0.756442 AAAAGCAGTCTGGCCTTGCA 60.756 50.000 19.22 0.00 40.22 4.08
12 13 0.390492 AAAAAGCAGTCTGGCCTTGC 59.610 50.000 3.32 9.14 38.09 4.01
13 14 1.269936 CCAAAAAGCAGTCTGGCCTTG 60.270 52.381 3.32 0.00 0.00 3.61
14 15 1.043022 CCAAAAAGCAGTCTGGCCTT 58.957 50.000 3.32 0.00 0.00 4.35
15 16 2.737503 CCAAAAAGCAGTCTGGCCT 58.262 52.632 3.32 0.00 0.00 5.19
17 18 4.661461 GCCAAAAAGCAGTCTGGC 57.339 55.556 1.14 4.43 46.95 4.85
18 19 1.815003 CCTAGCCAAAAAGCAGTCTGG 59.185 52.381 1.14 0.00 34.23 3.86
19 20 2.783135 TCCTAGCCAAAAAGCAGTCTG 58.217 47.619 0.00 0.00 34.23 3.51
20 21 3.265479 AGATCCTAGCCAAAAAGCAGTCT 59.735 43.478 0.00 0.00 34.23 3.24
21 22 3.376546 CAGATCCTAGCCAAAAAGCAGTC 59.623 47.826 0.00 0.00 34.23 3.51
22 23 3.350833 CAGATCCTAGCCAAAAAGCAGT 58.649 45.455 0.00 0.00 34.23 4.40
23 24 2.686915 CCAGATCCTAGCCAAAAAGCAG 59.313 50.000 0.00 0.00 34.23 4.24
24 25 2.041620 ACCAGATCCTAGCCAAAAAGCA 59.958 45.455 0.00 0.00 34.23 3.91
25 26 2.424956 CACCAGATCCTAGCCAAAAAGC 59.575 50.000 0.00 0.00 0.00 3.51
26 27 3.690460 ACACCAGATCCTAGCCAAAAAG 58.310 45.455 0.00 0.00 0.00 2.27
27 28 3.806949 ACACCAGATCCTAGCCAAAAA 57.193 42.857 0.00 0.00 0.00 1.94
28 29 4.919774 TTACACCAGATCCTAGCCAAAA 57.080 40.909 0.00 0.00 0.00 2.44
29 30 4.473196 TCATTACACCAGATCCTAGCCAAA 59.527 41.667 0.00 0.00 0.00 3.28
30 31 4.037222 TCATTACACCAGATCCTAGCCAA 58.963 43.478 0.00 0.00 0.00 4.52
31 32 3.653164 TCATTACACCAGATCCTAGCCA 58.347 45.455 0.00 0.00 0.00 4.75
32 33 4.503991 CCTTCATTACACCAGATCCTAGCC 60.504 50.000 0.00 0.00 0.00 3.93
33 34 4.101741 ACCTTCATTACACCAGATCCTAGC 59.898 45.833 0.00 0.00 0.00 3.42
34 35 5.221541 GGACCTTCATTACACCAGATCCTAG 60.222 48.000 0.00 0.00 0.00 3.02
35 36 4.654262 GGACCTTCATTACACCAGATCCTA 59.346 45.833 0.00 0.00 0.00 2.94
36 37 3.456277 GGACCTTCATTACACCAGATCCT 59.544 47.826 0.00 0.00 0.00 3.24
37 38 3.456277 AGGACCTTCATTACACCAGATCC 59.544 47.826 0.00 0.00 0.00 3.36
38 39 4.762289 AGGACCTTCATTACACCAGATC 57.238 45.455 0.00 0.00 0.00 2.75
39 40 6.636454 TTTAGGACCTTCATTACACCAGAT 57.364 37.500 0.00 0.00 0.00 2.90
40 41 6.636454 ATTTAGGACCTTCATTACACCAGA 57.364 37.500 0.00 0.00 0.00 3.86
41 42 8.980481 AATATTTAGGACCTTCATTACACCAG 57.020 34.615 0.00 0.00 0.00 4.00
42 43 9.762381 AAAATATTTAGGACCTTCATTACACCA 57.238 29.630 0.00 0.00 0.00 4.17
44 45 9.931210 CGAAAATATTTAGGACCTTCATTACAC 57.069 33.333 0.00 0.00 0.00 2.90
45 46 9.893634 TCGAAAATATTTAGGACCTTCATTACA 57.106 29.630 0.00 0.00 0.00 2.41
49 50 9.681062 TCTTTCGAAAATATTTAGGACCTTCAT 57.319 29.630 12.41 0.00 0.00 2.57
50 51 9.162764 CTCTTTCGAAAATATTTAGGACCTTCA 57.837 33.333 12.41 0.00 0.00 3.02
51 52 9.379791 TCTCTTTCGAAAATATTTAGGACCTTC 57.620 33.333 12.41 0.00 0.00 3.46
52 53 9.734984 TTCTCTTTCGAAAATATTTAGGACCTT 57.265 29.630 12.41 0.00 0.00 3.50
53 54 9.907229 ATTCTCTTTCGAAAATATTTAGGACCT 57.093 29.630 12.41 0.00 0.00 3.85
54 55 9.937175 CATTCTCTTTCGAAAATATTTAGGACC 57.063 33.333 12.41 0.00 0.00 4.46
111 112 9.357652 GCACATGAGCTCTTTTTATGAAATAAA 57.642 29.630 16.19 0.00 46.33 1.40
112 113 8.522003 TGCACATGAGCTCTTTTTATGAAATAA 58.478 29.630 16.19 0.00 34.35 1.40
113 114 8.054152 TGCACATGAGCTCTTTTTATGAAATA 57.946 30.769 16.19 0.00 34.99 1.40
114 115 6.927416 TGCACATGAGCTCTTTTTATGAAAT 58.073 32.000 16.19 0.00 34.99 2.17
115 116 6.016024 ACTGCACATGAGCTCTTTTTATGAAA 60.016 34.615 16.19 1.14 34.99 2.69
116 117 5.474532 ACTGCACATGAGCTCTTTTTATGAA 59.525 36.000 16.19 0.00 34.99 2.57
117 118 5.005740 ACTGCACATGAGCTCTTTTTATGA 58.994 37.500 16.19 0.00 34.99 2.15
118 119 5.306532 ACTGCACATGAGCTCTTTTTATG 57.693 39.130 16.19 12.02 34.99 1.90
119 120 6.176183 ACTACTGCACATGAGCTCTTTTTAT 58.824 36.000 16.19 0.00 34.99 1.40
120 121 5.551233 ACTACTGCACATGAGCTCTTTTTA 58.449 37.500 16.19 0.00 34.99 1.52
121 122 4.392940 ACTACTGCACATGAGCTCTTTTT 58.607 39.130 16.19 0.00 34.99 1.94
122 123 4.013267 ACTACTGCACATGAGCTCTTTT 57.987 40.909 16.19 0.00 34.99 2.27
123 124 3.692257 ACTACTGCACATGAGCTCTTT 57.308 42.857 16.19 0.00 34.99 2.52
124 125 3.131933 CCTACTACTGCACATGAGCTCTT 59.868 47.826 16.19 5.66 34.99 2.85
125 126 2.692557 CCTACTACTGCACATGAGCTCT 59.307 50.000 16.19 3.81 34.99 4.09
126 127 2.690497 TCCTACTACTGCACATGAGCTC 59.310 50.000 16.24 6.82 34.99 4.09
127 128 2.692557 CTCCTACTACTGCACATGAGCT 59.307 50.000 16.24 0.00 34.99 4.09
128 129 2.223923 CCTCCTACTACTGCACATGAGC 60.224 54.545 8.32 8.32 0.00 4.26
129 130 3.291584 TCCTCCTACTACTGCACATGAG 58.708 50.000 0.00 0.00 0.00 2.90
130 131 3.291584 CTCCTCCTACTACTGCACATGA 58.708 50.000 0.00 0.00 0.00 3.07
131 132 2.363680 CCTCCTCCTACTACTGCACATG 59.636 54.545 0.00 0.00 0.00 3.21
132 133 2.245028 TCCTCCTCCTACTACTGCACAT 59.755 50.000 0.00 0.00 0.00 3.21
133 134 1.639108 TCCTCCTCCTACTACTGCACA 59.361 52.381 0.00 0.00 0.00 4.57
134 135 2.427812 GTTCCTCCTCCTACTACTGCAC 59.572 54.545 0.00 0.00 0.00 4.57
135 136 2.042569 TGTTCCTCCTCCTACTACTGCA 59.957 50.000 0.00 0.00 0.00 4.41
136 137 2.691011 CTGTTCCTCCTCCTACTACTGC 59.309 54.545 0.00 0.00 0.00 4.40
137 138 3.053544 TCCTGTTCCTCCTCCTACTACTG 60.054 52.174 0.00 0.00 0.00 2.74
138 139 3.199671 TCCTGTTCCTCCTCCTACTACT 58.800 50.000 0.00 0.00 0.00 2.57
139 140 3.558033 CTCCTGTTCCTCCTCCTACTAC 58.442 54.545 0.00 0.00 0.00 2.73
140 141 2.514582 CCTCCTGTTCCTCCTCCTACTA 59.485 54.545 0.00 0.00 0.00 1.82
141 142 1.289530 CCTCCTGTTCCTCCTCCTACT 59.710 57.143 0.00 0.00 0.00 2.57
142 143 1.288335 TCCTCCTGTTCCTCCTCCTAC 59.712 57.143 0.00 0.00 0.00 3.18
143 144 1.571457 CTCCTCCTGTTCCTCCTCCTA 59.429 57.143 0.00 0.00 0.00 2.94
144 145 0.338120 CTCCTCCTGTTCCTCCTCCT 59.662 60.000 0.00 0.00 0.00 3.69
145 146 1.334384 GCTCCTCCTGTTCCTCCTCC 61.334 65.000 0.00 0.00 0.00 4.30
146 147 1.334384 GGCTCCTCCTGTTCCTCCTC 61.334 65.000 0.00 0.00 0.00 3.71
147 148 1.306568 GGCTCCTCCTGTTCCTCCT 60.307 63.158 0.00 0.00 0.00 3.69
148 149 0.912006 AAGGCTCCTCCTGTTCCTCC 60.912 60.000 0.00 0.00 46.94 4.30
149 150 0.539518 GAAGGCTCCTCCTGTTCCTC 59.460 60.000 0.00 0.00 46.94 3.71
150 151 0.178891 TGAAGGCTCCTCCTGTTCCT 60.179 55.000 0.00 0.00 46.94 3.36
151 152 0.251634 CTGAAGGCTCCTCCTGTTCC 59.748 60.000 0.00 0.00 46.94 3.62
152 153 0.392327 GCTGAAGGCTCCTCCTGTTC 60.392 60.000 0.00 0.00 46.94 3.18
153 154 1.682257 GCTGAAGGCTCCTCCTGTT 59.318 57.895 0.00 0.00 46.94 3.16
154 155 2.654079 CGCTGAAGGCTCCTCCTGT 61.654 63.158 0.00 0.00 46.94 4.00
155 156 2.186384 CGCTGAAGGCTCCTCCTG 59.814 66.667 0.00 0.00 46.94 3.86
157 158 2.185608 GTCGCTGAAGGCTCCTCC 59.814 66.667 0.00 0.00 39.13 4.30
158 159 2.202676 CGTCGCTGAAGGCTCCTC 60.203 66.667 0.00 0.00 39.13 3.71
159 160 4.443266 GCGTCGCTGAAGGCTCCT 62.443 66.667 10.68 0.00 39.13 3.69
160 161 3.064987 TAGCGTCGCTGAAGGCTCC 62.065 63.158 29.43 0.00 40.10 4.70
161 162 1.874466 GTAGCGTCGCTGAAGGCTC 60.874 63.158 29.43 7.28 40.10 4.70
162 163 2.182030 GTAGCGTCGCTGAAGGCT 59.818 61.111 29.43 5.25 40.10 4.58
163 164 2.886124 GGTAGCGTCGCTGAAGGC 60.886 66.667 29.43 13.24 40.10 4.35
164 165 2.202756 GGGTAGCGTCGCTGAAGG 60.203 66.667 29.43 0.00 40.10 3.46
165 166 2.579787 CGGGTAGCGTCGCTGAAG 60.580 66.667 29.43 13.75 40.10 3.02
196 197 1.070710 GTACGTAGCGATGAGACTCCG 60.071 57.143 0.00 0.00 0.00 4.63
197 198 1.938577 TGTACGTAGCGATGAGACTCC 59.061 52.381 0.00 0.00 0.00 3.85
263 264 1.394917 CAGAACGTTGACTAGCATGGC 59.605 52.381 5.00 0.00 0.00 4.40
289 290 1.143183 GCGCTCGTAATCCCCTTCA 59.857 57.895 0.00 0.00 0.00 3.02
324 325 1.982938 GGTGTCGCTCCCAGTACCT 60.983 63.158 0.00 0.00 0.00 3.08
325 326 1.823169 TTGGTGTCGCTCCCAGTACC 61.823 60.000 0.00 0.00 31.04 3.34
326 327 0.034337 TTTGGTGTCGCTCCCAGTAC 59.966 55.000 0.00 0.00 31.04 2.73
327 328 0.981183 ATTTGGTGTCGCTCCCAGTA 59.019 50.000 0.00 0.00 31.04 2.74
328 329 0.110486 AATTTGGTGTCGCTCCCAGT 59.890 50.000 0.00 0.00 31.04 4.00
329 330 2.009774 CTAATTTGGTGTCGCTCCCAG 58.990 52.381 0.00 0.00 31.04 4.45
330 331 1.339631 CCTAATTTGGTGTCGCTCCCA 60.340 52.381 0.00 0.00 0.00 4.37
345 346 8.265055 TCGAACAGATCAATTAAAGTCCCTAAT 58.735 33.333 0.00 0.00 0.00 1.73
352 353 9.965824 ATTTGTTTCGAACAGATCAATTAAAGT 57.034 25.926 0.00 0.00 43.27 2.66
360 361 4.545610 GCCAATTTGTTTCGAACAGATCA 58.454 39.130 0.00 0.00 43.27 2.92
370 371 3.247411 CAGAAAACCGGCCAATTTGTTTC 59.753 43.478 0.00 3.50 31.01 2.78
371 372 3.202097 CAGAAAACCGGCCAATTTGTTT 58.798 40.909 0.00 0.91 32.62 2.83
384 385 9.978044 AGTTATTATAGATACGGACAGAAAACC 57.022 33.333 0.00 0.00 0.00 3.27
424 425 8.959548 TGCATGTCATGAGAAATAAATTAGTGT 58.040 29.630 17.24 0.00 0.00 3.55
438 439 4.454847 GGTGGATAGATTGCATGTCATGAG 59.545 45.833 17.24 0.00 0.00 2.90
452 453 2.355108 GCAGTTTGCTGAGGTGGATAGA 60.355 50.000 0.00 0.00 45.28 1.98
473 474 1.136110 GGAAAATAATGGCCGGTGTGG 59.864 52.381 1.90 0.00 42.50 4.17
478 479 3.904800 AAAAGGGAAAATAATGGCCGG 57.095 42.857 0.00 0.00 0.00 6.13
480 481 6.056090 TGGTTAAAAGGGAAAATAATGGCC 57.944 37.500 0.00 0.00 0.00 5.36
498 499 7.918033 CACATAACATGCCGATAAAATTGGTTA 59.082 33.333 0.00 0.00 36.12 2.85
517 518 8.597662 TTGGTCTGTTTAAGTCTACACATAAC 57.402 34.615 0.00 0.00 0.00 1.89
525 526 4.103469 TGGGCTTTGGTCTGTTTAAGTCTA 59.897 41.667 0.00 0.00 0.00 2.59
595 596 2.743636 TGTGTTGGATTCGAGGAGAC 57.256 50.000 0.00 0.00 0.00 3.36
613 614 0.250295 TTCTGTCCAGCGAACCCTTG 60.250 55.000 0.00 0.00 0.00 3.61
646 647 2.279741 TCATGCATGGTACTCTTTCGC 58.720 47.619 25.97 0.00 0.00 4.70
669 671 1.002468 CGCGAACATCCCATGATTTCC 60.002 52.381 0.00 0.00 0.00 3.13
710 712 3.831715 AACATTTGAGAAAGCGTAGGC 57.168 42.857 0.00 0.00 40.37 3.93
711 713 5.411669 AGGTTAACATTTGAGAAAGCGTAGG 59.588 40.000 8.10 0.00 0.00 3.18
712 714 6.369065 AGAGGTTAACATTTGAGAAAGCGTAG 59.631 38.462 8.10 0.00 0.00 3.51
713 715 6.228258 AGAGGTTAACATTTGAGAAAGCGTA 58.772 36.000 8.10 0.00 0.00 4.42
714 716 5.063880 AGAGGTTAACATTTGAGAAAGCGT 58.936 37.500 8.10 0.00 0.00 5.07
715 717 5.613358 AGAGGTTAACATTTGAGAAAGCG 57.387 39.130 8.10 0.00 0.00 4.68
716 718 6.382608 GGAAGAGGTTAACATTTGAGAAAGC 58.617 40.000 8.10 0.00 0.00 3.51
717 719 6.603095 CGGAAGAGGTTAACATTTGAGAAAG 58.397 40.000 8.10 0.00 0.00 2.62
718 720 5.048991 GCGGAAGAGGTTAACATTTGAGAAA 60.049 40.000 8.10 0.00 0.00 2.52
719 721 4.454504 GCGGAAGAGGTTAACATTTGAGAA 59.545 41.667 8.10 0.00 0.00 2.87
720 722 4.000988 GCGGAAGAGGTTAACATTTGAGA 58.999 43.478 8.10 0.00 0.00 3.27
721 723 3.751175 TGCGGAAGAGGTTAACATTTGAG 59.249 43.478 8.10 0.00 0.00 3.02
722 724 3.745799 TGCGGAAGAGGTTAACATTTGA 58.254 40.909 8.10 0.00 0.00 2.69
723 725 3.502211 ACTGCGGAAGAGGTTAACATTTG 59.498 43.478 8.10 0.00 0.00 2.32
724 726 3.751518 ACTGCGGAAGAGGTTAACATTT 58.248 40.909 8.10 0.00 0.00 2.32
725 727 3.418684 ACTGCGGAAGAGGTTAACATT 57.581 42.857 8.10 0.00 0.00 2.71
726 728 3.418684 AACTGCGGAAGAGGTTAACAT 57.581 42.857 8.10 0.00 0.00 2.71
727 729 2.922740 AACTGCGGAAGAGGTTAACA 57.077 45.000 8.10 0.00 0.00 2.41
728 730 4.658713 GTTAACTGCGGAAGAGGTTAAC 57.341 45.455 11.82 11.82 44.42 2.01
729 731 4.339872 TGTTAACTGCGGAAGAGGTTAA 57.660 40.909 7.22 0.00 37.29 2.01
730 732 4.339872 TTGTTAACTGCGGAAGAGGTTA 57.660 40.909 7.22 0.00 0.00 2.85
731 733 2.922740 TGTTAACTGCGGAAGAGGTT 57.077 45.000 7.22 0.00 0.00 3.50
732 734 2.922740 TTGTTAACTGCGGAAGAGGT 57.077 45.000 7.22 0.00 0.00 3.85
733 735 4.003648 AGATTTGTTAACTGCGGAAGAGG 58.996 43.478 7.22 0.00 0.00 3.69
774 776 2.545952 GGGTCTACTATGTGCATCACGG 60.546 54.545 0.00 0.00 37.14 4.94
775 777 2.100749 TGGGTCTACTATGTGCATCACG 59.899 50.000 0.00 0.00 37.14 4.35
776 778 3.133003 AGTGGGTCTACTATGTGCATCAC 59.867 47.826 0.00 0.00 34.56 3.06
777 779 3.374764 AGTGGGTCTACTATGTGCATCA 58.625 45.455 0.00 0.00 0.00 3.07
778 780 5.531122 TTAGTGGGTCTACTATGTGCATC 57.469 43.478 0.00 0.00 33.47 3.91
779 781 7.798710 ATATTAGTGGGTCTACTATGTGCAT 57.201 36.000 0.00 0.00 33.47 3.96
780 782 8.895141 ATATATTAGTGGGTCTACTATGTGCA 57.105 34.615 0.00 0.00 33.47 4.57
804 806 9.902684 CTGATAGAGCAATGGAAATAGGAATAT 57.097 33.333 0.00 0.00 0.00 1.28
827 829 1.310216 TAGAAGCTACGCACGGCTGA 61.310 55.000 0.00 0.00 38.91 4.26
844 846 8.273780 AGCAGTTGTTGAAAGAGGATTAATAG 57.726 34.615 0.00 0.00 0.00 1.73
845 847 7.882791 TGAGCAGTTGTTGAAAGAGGATTAATA 59.117 33.333 0.00 0.00 0.00 0.98
846 848 6.716628 TGAGCAGTTGTTGAAAGAGGATTAAT 59.283 34.615 0.00 0.00 0.00 1.40
847 849 6.061441 TGAGCAGTTGTTGAAAGAGGATTAA 58.939 36.000 0.00 0.00 0.00 1.40
848 850 5.620206 TGAGCAGTTGTTGAAAGAGGATTA 58.380 37.500 0.00 0.00 0.00 1.75
925 932 6.455647 TGTCTTGTGTATGTGTTCTTCCTAG 58.544 40.000 0.00 0.00 0.00 3.02
955 962 1.303236 TGCAGTTTGGCGCTGGTAT 60.303 52.632 7.64 0.00 36.28 2.73
992 999 2.154462 CTTCACCAGCCATCGTTTTCT 58.846 47.619 0.00 0.00 0.00 2.52
1008 1018 2.429971 CAGTAGCTGCAGATCTCCTTCA 59.570 50.000 20.43 0.00 0.00 3.02
1318 1341 2.045536 CCAGGCAGGGAACAGCTC 60.046 66.667 0.00 0.00 43.36 4.09
1699 1729 3.007182 ACAATCTTGGGAGTGGCAATTTG 59.993 43.478 0.00 0.00 41.24 2.32
1726 1756 1.005097 TGAGCTGGATGGCAATTCTGT 59.995 47.619 0.00 0.00 34.17 3.41
1750 1780 2.057137 TGGCATGGTAATCAAGGAGC 57.943 50.000 0.00 0.00 0.00 4.70
1856 1890 2.124151 GCCGATTGGATGCCCAGT 60.124 61.111 1.98 0.00 44.60 4.00
1857 1891 2.124193 TGCCGATTGGATGCCCAG 60.124 61.111 1.98 0.00 44.60 4.45
1871 1905 5.057149 TGAGTTCTAGAAAAACTGAGTGCC 58.943 41.667 6.78 0.00 37.10 5.01
1872 1906 6.648725 AGATGAGTTCTAGAAAAACTGAGTGC 59.351 38.462 6.78 0.00 37.10 4.40
1873 1907 9.698309 TTAGATGAGTTCTAGAAAAACTGAGTG 57.302 33.333 6.78 0.00 38.19 3.51
1902 1936 9.566432 AAGGTGAATGAGACCAAATTATATCTC 57.434 33.333 0.00 6.03 38.46 2.75
1903 1937 9.927081 AAAGGTGAATGAGACCAAATTATATCT 57.073 29.630 0.00 0.00 35.76 1.98
1909 1943 8.470002 GCTATAAAAGGTGAATGAGACCAAATT 58.530 33.333 0.00 0.00 35.76 1.82
1910 1944 7.068716 GGCTATAAAAGGTGAATGAGACCAAAT 59.931 37.037 0.00 0.00 35.76 2.32
1911 1945 6.377146 GGCTATAAAAGGTGAATGAGACCAAA 59.623 38.462 0.00 0.00 35.76 3.28
1912 1946 5.885912 GGCTATAAAAGGTGAATGAGACCAA 59.114 40.000 0.00 0.00 35.76 3.67
1913 1947 5.045213 TGGCTATAAAAGGTGAATGAGACCA 60.045 40.000 0.00 0.00 35.76 4.02
1914 1948 5.437060 TGGCTATAAAAGGTGAATGAGACC 58.563 41.667 0.00 0.00 0.00 3.85
1915 1949 7.420800 CAATGGCTATAAAAGGTGAATGAGAC 58.579 38.462 0.00 0.00 0.00 3.36
1916 1950 6.547141 CCAATGGCTATAAAAGGTGAATGAGA 59.453 38.462 0.00 0.00 0.00 3.27
1917 1951 6.547141 TCCAATGGCTATAAAAGGTGAATGAG 59.453 38.462 0.00 0.00 0.00 2.90
1918 1952 6.430864 TCCAATGGCTATAAAAGGTGAATGA 58.569 36.000 0.00 0.00 0.00 2.57
1919 1953 6.713762 TCCAATGGCTATAAAAGGTGAATG 57.286 37.500 0.00 0.00 0.00 2.67
1920 1954 6.840705 ACATCCAATGGCTATAAAAGGTGAAT 59.159 34.615 0.00 0.00 33.60 2.57
1921 1955 6.096705 CACATCCAATGGCTATAAAAGGTGAA 59.903 38.462 0.00 0.00 33.60 3.18
1922 1956 5.593909 CACATCCAATGGCTATAAAAGGTGA 59.406 40.000 0.00 0.00 33.60 4.02
1923 1957 5.593909 TCACATCCAATGGCTATAAAAGGTG 59.406 40.000 0.00 0.00 33.60 4.00
1924 1958 5.765510 TCACATCCAATGGCTATAAAAGGT 58.234 37.500 0.00 0.00 33.60 3.50
1925 1959 6.266103 ACATCACATCCAATGGCTATAAAAGG 59.734 38.462 0.00 0.00 33.60 3.11
1926 1960 7.281040 ACATCACATCCAATGGCTATAAAAG 57.719 36.000 0.00 0.00 33.60 2.27
1927 1961 7.658525 AACATCACATCCAATGGCTATAAAA 57.341 32.000 0.00 0.00 33.60 1.52
1928 1962 8.938801 ATAACATCACATCCAATGGCTATAAA 57.061 30.769 0.00 0.00 33.60 1.40
1930 1964 9.671279 CTTATAACATCACATCCAATGGCTATA 57.329 33.333 0.00 0.00 33.60 1.31
1931 1965 8.385491 TCTTATAACATCACATCCAATGGCTAT 58.615 33.333 0.00 0.00 33.60 2.97
1932 1966 7.744733 TCTTATAACATCACATCCAATGGCTA 58.255 34.615 0.00 0.00 33.60 3.93
1933 1967 6.604171 TCTTATAACATCACATCCAATGGCT 58.396 36.000 0.00 0.00 33.60 4.75
1934 1968 6.882610 TCTTATAACATCACATCCAATGGC 57.117 37.500 0.00 0.00 33.60 4.40
1935 1969 7.310664 GCATCTTATAACATCACATCCAATGG 58.689 38.462 0.00 0.00 33.60 3.16
1936 1970 7.019418 CGCATCTTATAACATCACATCCAATG 58.981 38.462 0.00 0.00 0.00 2.82
1937 1971 6.712095 ACGCATCTTATAACATCACATCCAAT 59.288 34.615 0.00 0.00 0.00 3.16
1938 1972 6.018016 CACGCATCTTATAACATCACATCCAA 60.018 38.462 0.00 0.00 0.00 3.53
1939 1973 5.466393 CACGCATCTTATAACATCACATCCA 59.534 40.000 0.00 0.00 0.00 3.41
1940 1974 5.466728 ACACGCATCTTATAACATCACATCC 59.533 40.000 0.00 0.00 0.00 3.51
1941 1975 6.018751 ACACACGCATCTTATAACATCACATC 60.019 38.462 0.00 0.00 0.00 3.06
1942 1976 5.817296 ACACACGCATCTTATAACATCACAT 59.183 36.000 0.00 0.00 0.00 3.21
1943 1977 5.063312 CACACACGCATCTTATAACATCACA 59.937 40.000 0.00 0.00 0.00 3.58
1944 1978 5.492854 CACACACGCATCTTATAACATCAC 58.507 41.667 0.00 0.00 0.00 3.06
1945 1979 4.033932 GCACACACGCATCTTATAACATCA 59.966 41.667 0.00 0.00 0.00 3.07
1946 1980 4.271049 AGCACACACGCATCTTATAACATC 59.729 41.667 0.00 0.00 0.00 3.06
1947 1981 4.034394 CAGCACACACGCATCTTATAACAT 59.966 41.667 0.00 0.00 0.00 2.71
1948 1982 3.370672 CAGCACACACGCATCTTATAACA 59.629 43.478 0.00 0.00 0.00 2.41
1949 1983 3.616821 TCAGCACACACGCATCTTATAAC 59.383 43.478 0.00 0.00 0.00 1.89
1950 1984 3.616821 GTCAGCACACACGCATCTTATAA 59.383 43.478 0.00 0.00 0.00 0.98
1951 1985 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
1952 1986 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
1953 1987 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
1954 1988 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
1955 1989 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
1956 1990 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
1957 1991 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
1958 1992 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
1959 1993 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
1960 1994 3.337889 CCCACGTCAGCACACACG 61.338 66.667 0.00 0.00 41.90 4.49
1961 1995 1.817941 AACCCACGTCAGCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
1962 1996 1.817520 CAACCCACGTCAGCACACA 60.818 57.895 0.00 0.00 0.00 3.72
1963 1997 0.531090 TACAACCCACGTCAGCACAC 60.531 55.000 0.00 0.00 0.00 3.82
1964 1998 0.394938 ATACAACCCACGTCAGCACA 59.605 50.000 0.00 0.00 0.00 4.57
1965 1999 1.076332 GATACAACCCACGTCAGCAC 58.924 55.000 0.00 0.00 0.00 4.40
1966 2000 0.973632 AGATACAACCCACGTCAGCA 59.026 50.000 0.00 0.00 0.00 4.41
1967 2001 1.337823 ACAGATACAACCCACGTCAGC 60.338 52.381 0.00 0.00 0.00 4.26
1968 2002 2.743636 ACAGATACAACCCACGTCAG 57.256 50.000 0.00 0.00 0.00 3.51
1969 2003 3.478857 AAACAGATACAACCCACGTCA 57.521 42.857 0.00 0.00 0.00 4.35
1970 2004 4.823790 AAAAACAGATACAACCCACGTC 57.176 40.909 0.00 0.00 0.00 4.34
1971 2005 6.887626 AATAAAAACAGATACAACCCACGT 57.112 33.333 0.00 0.00 0.00 4.49
1972 2006 7.863375 TGAAAATAAAAACAGATACAACCCACG 59.137 33.333 0.00 0.00 0.00 4.94
1973 2007 9.535878 TTGAAAATAAAAACAGATACAACCCAC 57.464 29.630 0.00 0.00 0.00 4.61
1974 2008 9.757227 CTTGAAAATAAAAACAGATACAACCCA 57.243 29.630 0.00 0.00 0.00 4.51
1975 2009 9.203421 CCTTGAAAATAAAAACAGATACAACCC 57.797 33.333 0.00 0.00 0.00 4.11
1976 2010 9.758651 ACCTTGAAAATAAAAACAGATACAACC 57.241 29.630 0.00 0.00 0.00 3.77
2023 2057 6.183360 GGAGTGCCTAGAACTCATTTAGATGA 60.183 42.308 20.54 0.00 44.86 2.92
2024 2058 5.988561 GGAGTGCCTAGAACTCATTTAGATG 59.011 44.000 20.54 0.00 44.86 2.90
2025 2059 5.071115 GGGAGTGCCTAGAACTCATTTAGAT 59.929 44.000 20.54 0.00 44.86 1.98
2026 2060 4.406003 GGGAGTGCCTAGAACTCATTTAGA 59.594 45.833 20.54 0.00 44.86 2.10
2027 2061 4.162320 TGGGAGTGCCTAGAACTCATTTAG 59.838 45.833 20.54 0.00 44.86 1.85
2028 2062 4.101114 TGGGAGTGCCTAGAACTCATTTA 58.899 43.478 20.54 6.88 44.86 1.40
2029 2063 2.912956 TGGGAGTGCCTAGAACTCATTT 59.087 45.455 20.54 0.00 44.86 2.32
2030 2064 2.551270 TGGGAGTGCCTAGAACTCATT 58.449 47.619 20.54 0.25 44.86 2.57
2031 2065 2.254152 TGGGAGTGCCTAGAACTCAT 57.746 50.000 20.54 0.00 44.86 2.90
2032 2066 2.111384 GATGGGAGTGCCTAGAACTCA 58.889 52.381 20.54 8.03 44.86 3.41
2033 2067 1.067821 CGATGGGAGTGCCTAGAACTC 59.932 57.143 14.10 14.10 42.79 3.01
2034 2068 1.115467 CGATGGGAGTGCCTAGAACT 58.885 55.000 1.06 0.00 0.00 3.01
2035 2069 0.105039 CCGATGGGAGTGCCTAGAAC 59.895 60.000 1.06 0.00 34.06 3.01
2036 2070 1.686325 GCCGATGGGAGTGCCTAGAA 61.686 60.000 1.06 0.00 34.06 2.10
2037 2071 2.134287 GCCGATGGGAGTGCCTAGA 61.134 63.158 1.06 0.00 34.06 2.43
2038 2072 2.423446 GCCGATGGGAGTGCCTAG 59.577 66.667 1.06 0.00 34.06 3.02
2039 2073 2.364973 TGCCGATGGGAGTGCCTA 60.365 61.111 1.06 0.00 34.06 3.93
2040 2074 4.101448 GTGCCGATGGGAGTGCCT 62.101 66.667 1.06 0.00 34.06 4.75
2041 2075 3.628646 AAGTGCCGATGGGAGTGCC 62.629 63.158 0.00 0.00 34.06 5.01
2042 2076 2.045926 AAGTGCCGATGGGAGTGC 60.046 61.111 0.00 0.00 34.06 4.40
2043 2077 0.321564 TTCAAGTGCCGATGGGAGTG 60.322 55.000 0.00 0.00 34.06 3.51
2044 2078 0.036010 CTTCAAGTGCCGATGGGAGT 60.036 55.000 0.00 0.00 34.06 3.85
2045 2079 1.372087 GCTTCAAGTGCCGATGGGAG 61.372 60.000 0.00 0.00 34.06 4.30
2046 2080 1.377202 GCTTCAAGTGCCGATGGGA 60.377 57.895 0.00 0.00 34.06 4.37
2047 2081 2.753966 CGCTTCAAGTGCCGATGGG 61.754 63.158 0.00 0.00 0.00 4.00
2048 2082 2.753966 CCGCTTCAAGTGCCGATGG 61.754 63.158 0.00 0.00 0.00 3.51
2049 2083 2.753966 CCCGCTTCAAGTGCCGATG 61.754 63.158 0.00 0.00 0.00 3.84
2050 2084 2.257409 ATCCCGCTTCAAGTGCCGAT 62.257 55.000 0.00 0.00 0.00 4.18
2051 2085 2.954684 ATCCCGCTTCAAGTGCCGA 61.955 57.895 0.00 0.00 0.00 5.54
2052 2086 2.436646 ATCCCGCTTCAAGTGCCG 60.437 61.111 0.00 0.00 0.00 5.69
2080 2114 0.250424 CACGATATCCATGGCTGGCA 60.250 55.000 6.96 6.31 42.80 4.92
2136 2170 1.019278 CCGGTGTCCAGGAAATCGTG 61.019 60.000 11.60 0.00 0.00 4.35
2200 2234 0.745845 GCACATGGCGAGTTCATCCT 60.746 55.000 0.00 0.00 0.00 3.24
2291 2325 2.633860 GCCCAGGCATACATAGCAC 58.366 57.895 3.12 0.00 41.49 4.40
2308 2342 1.098050 AGAAAGATTCGGCCACATGC 58.902 50.000 2.24 0.00 40.16 4.06
2309 2343 1.402968 CCAGAAAGATTCGGCCACATG 59.597 52.381 2.24 0.00 34.02 3.21
2310 2344 1.683011 CCCAGAAAGATTCGGCCACAT 60.683 52.381 2.24 0.00 34.02 3.21
2311 2345 0.322456 CCCAGAAAGATTCGGCCACA 60.322 55.000 2.24 0.00 34.02 4.17
2312 2346 1.657751 GCCCAGAAAGATTCGGCCAC 61.658 60.000 2.24 0.00 32.16 5.01
2313 2347 1.378514 GCCCAGAAAGATTCGGCCA 60.379 57.895 2.24 0.00 32.16 5.36
2314 2348 2.472909 CGCCCAGAAAGATTCGGCC 61.473 63.158 0.00 0.00 34.04 6.13
2315 2349 2.472909 CCGCCCAGAAAGATTCGGC 61.473 63.158 0.00 0.00 34.17 5.54
2316 2350 0.177141 TACCGCCCAGAAAGATTCGG 59.823 55.000 0.00 0.00 42.24 4.30
2317 2351 2.240493 ATACCGCCCAGAAAGATTCG 57.760 50.000 0.00 0.00 34.02 3.34
2318 2352 4.083271 GCATAATACCGCCCAGAAAGATTC 60.083 45.833 0.00 0.00 0.00 2.52
2319 2353 3.821033 GCATAATACCGCCCAGAAAGATT 59.179 43.478 0.00 0.00 0.00 2.40
2320 2354 3.412386 GCATAATACCGCCCAGAAAGAT 58.588 45.455 0.00 0.00 0.00 2.40
2321 2355 2.486548 GGCATAATACCGCCCAGAAAGA 60.487 50.000 0.00 0.00 42.82 2.52
2322 2356 1.880027 GGCATAATACCGCCCAGAAAG 59.120 52.381 0.00 0.00 42.82 2.62
2323 2357 1.975660 GGCATAATACCGCCCAGAAA 58.024 50.000 0.00 0.00 42.82 2.52
2324 2358 3.717842 GGCATAATACCGCCCAGAA 57.282 52.632 0.00 0.00 42.82 3.02
2330 2364 3.748021 GCGAAAGGCATAATACCGC 57.252 52.632 0.00 0.00 42.87 5.68
2340 2374 0.249031 ACACAAAGCAAGCGAAAGGC 60.249 50.000 0.00 0.00 44.05 4.35
2341 2375 1.480205 CACACAAAGCAAGCGAAAGG 58.520 50.000 0.00 0.00 0.00 3.11
2342 2376 0.848305 GCACACAAAGCAAGCGAAAG 59.152 50.000 0.00 0.00 0.00 2.62
2343 2377 0.172127 TGCACACAAAGCAAGCGAAA 59.828 45.000 0.00 0.00 39.39 3.46
2344 2378 0.172127 TTGCACACAAAGCAAGCGAA 59.828 45.000 0.00 0.00 46.13 4.70
2345 2379 1.805910 TTGCACACAAAGCAAGCGA 59.194 47.368 0.00 0.00 46.13 4.93
2346 2380 4.398631 TTGCACACAAAGCAAGCG 57.601 50.000 0.00 0.00 46.13 4.68
2350 2384 4.989797 CCATAGATTTTTGCACACAAAGCA 59.010 37.500 1.02 0.00 46.08 3.91
2351 2385 4.143052 GCCATAGATTTTTGCACACAAAGC 60.143 41.667 0.00 0.00 46.08 3.51
2352 2386 4.090354 CGCCATAGATTTTTGCACACAAAG 59.910 41.667 0.00 0.00 46.08 2.77
2353 2387 3.986572 CGCCATAGATTTTTGCACACAAA 59.013 39.130 0.00 0.00 43.97 2.83
2354 2388 3.254411 TCGCCATAGATTTTTGCACACAA 59.746 39.130 0.00 0.00 0.00 3.33
2355 2389 2.816672 TCGCCATAGATTTTTGCACACA 59.183 40.909 0.00 0.00 0.00 3.72
2356 2390 3.171277 GTCGCCATAGATTTTTGCACAC 58.829 45.455 0.00 0.00 0.00 3.82
2357 2391 2.163412 GGTCGCCATAGATTTTTGCACA 59.837 45.455 0.00 0.00 0.00 4.57
2584 2685 4.876107 GCCGATAAGATTTTGTCTGGAAGA 59.124 41.667 7.42 0.00 43.69 2.87
2585 2686 4.035675 GGCCGATAAGATTTTGTCTGGAAG 59.964 45.833 0.00 0.00 37.23 3.46
2586 2687 3.945285 GGCCGATAAGATTTTGTCTGGAA 59.055 43.478 0.00 0.00 37.23 3.53
2587 2688 3.541632 GGCCGATAAGATTTTGTCTGGA 58.458 45.455 0.00 0.00 37.23 3.86
2588 2689 2.287915 CGGCCGATAAGATTTTGTCTGG 59.712 50.000 24.07 0.00 37.23 3.86
2589 2690 3.194861 TCGGCCGATAAGATTTTGTCTG 58.805 45.455 27.28 0.00 37.23 3.51
2590 2691 3.536956 TCGGCCGATAAGATTTTGTCT 57.463 42.857 27.28 0.00 39.43 3.41
2591 2692 3.058914 CCATCGGCCGATAAGATTTTGTC 60.059 47.826 38.48 0.00 32.93 3.18
2592 2693 2.878406 CCATCGGCCGATAAGATTTTGT 59.122 45.455 38.48 12.87 32.93 2.83
2593 2694 2.350772 GCCATCGGCCGATAAGATTTTG 60.351 50.000 38.48 24.98 44.06 2.44
2629 2730 1.453669 GGAGGGAGATGGGCATGTC 59.546 63.158 0.00 0.00 0.00 3.06
2683 2784 2.109126 GCCGCTCAACTGGGATGAC 61.109 63.158 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.