Multiple sequence alignment - TraesCS7B01G055700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G055700 chr7B 100.000 4191 0 0 1 4191 59059660 59063850 0.000000e+00 7740
1 TraesCS7B01G055700 chr7B 83.943 629 72 16 1438 2045 59068004 59068624 3.630000e-160 575
2 TraesCS7B01G055700 chr7B 85.039 381 53 3 2073 2452 59069649 59070026 6.570000e-103 385
3 TraesCS7B01G055700 chr7D 95.989 2144 60 12 2069 4191 101728085 101730223 0.000000e+00 3459
4 TraesCS7B01G055700 chr7D 87.868 1154 75 25 918 2048 101726333 101727444 0.000000e+00 1295
5 TraesCS7B01G055700 chr7D 88.290 427 42 4 1438 1864 101734333 101734751 4.840000e-139 505
6 TraesCS7B01G055700 chr7D 86.000 350 23 15 389 725 101725753 101726089 6.670000e-93 351
7 TraesCS7B01G055700 chr7D 90.099 202 14 4 21 221 101725572 101725768 1.500000e-64 257
8 TraesCS7B01G055700 chr7D 89.247 93 9 1 3343 3435 12622757 12622848 9.520000e-22 115
9 TraesCS7B01G055700 chr7A 81.793 1104 131 41 2095 3171 105506804 105507864 0.000000e+00 861
10 TraesCS7B01G055700 chr7A 86.047 516 56 9 1438 1950 105505475 105505977 1.330000e-149 540
11 TraesCS7B01G055700 chr7A 95.288 191 6 3 210 397 76122855 76123045 2.450000e-77 300
12 TraesCS7B01G055700 chr7A 92.019 213 12 3 12 221 105501155 105501365 1.140000e-75 294
13 TraesCS7B01G055700 chr7A 97.500 80 2 0 4112 4191 105501534 105501613 2.030000e-28 137
14 TraesCS7B01G055700 chr7A 92.632 95 4 1 3168 3262 105507956 105508047 2.630000e-27 134
15 TraesCS7B01G055700 chr6B 98.286 175 3 0 217 391 639989162 639988988 1.460000e-79 307
16 TraesCS7B01G055700 chr6B 96.216 185 7 0 212 396 460493645 460493461 1.890000e-78 303
17 TraesCS7B01G055700 chr6B 95.789 190 5 3 219 405 717967249 717967060 1.890000e-78 303
18 TraesCS7B01G055700 chr5B 96.237 186 5 2 219 403 209646389 209646205 1.890000e-78 303
19 TraesCS7B01G055700 chr5B 96.089 179 5 2 209 387 428847161 428847337 1.470000e-74 291
20 TraesCS7B01G055700 chr5A 97.191 178 4 1 218 395 457431852 457431676 2.450000e-77 300
21 TraesCS7B01G055700 chr1B 95.699 186 6 2 219 402 530961416 530961231 8.810000e-77 298
22 TraesCS7B01G055700 chr3B 94.764 191 8 2 214 403 120620013 120620202 3.170000e-76 296
23 TraesCS7B01G055700 chr3A 90.323 93 8 1 3343 3435 718987889 718987798 2.050000e-23 121
24 TraesCS7B01G055700 chrUn 89.247 93 9 1 3343 3435 45089567 45089658 9.520000e-22 115
25 TraesCS7B01G055700 chrUn 89.247 93 9 1 3343 3435 171039854 171039945 9.520000e-22 115
26 TraesCS7B01G055700 chr6D 89.247 93 9 1 3343 3435 83969628 83969719 9.520000e-22 115
27 TraesCS7B01G055700 chr4D 89.247 93 9 1 3343 3435 398045222 398045131 9.520000e-22 115
28 TraesCS7B01G055700 chr4B 89.247 93 9 1 3343 3435 209316391 209316482 9.520000e-22 115
29 TraesCS7B01G055700 chr1D 89.247 93 9 1 3343 3435 275766202 275766293 9.520000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G055700 chr7B 59059660 59063850 4190 False 7740.0 7740 100.0000 1 4191 1 chr7B.!!$F1 4190
1 TraesCS7B01G055700 chr7B 59068004 59070026 2022 False 480.0 575 84.4910 1438 2452 2 chr7B.!!$F2 1014
2 TraesCS7B01G055700 chr7D 101725572 101730223 4651 False 1340.5 3459 89.9890 21 4191 4 chr7D.!!$F3 4170
3 TraesCS7B01G055700 chr7A 105501155 105508047 6892 False 393.2 861 89.9982 12 4191 5 chr7A.!!$F2 4179

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 234 0.036875 AACTTGTGTAGAGGGCAGGC 59.963 55.0 0.00 0.0 0.00 4.85 F
261 264 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.0 0.00 0.0 34.10 3.16 F
306 309 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.0 7.38 0.0 33.79 3.16 F
349 352 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.0 0.00 0.0 0.00 4.95 F
1074 2110 0.107945 GAGAGATGGCAAAGGCGAGT 60.108 55.0 0.00 0.0 42.47 4.18 F
2114 6436 0.112412 ATTGACCTGGCCCTTCGTTT 59.888 50.0 0.00 0.0 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2142 6464 0.110192 GCTTGCTACAGGCGTTCAAC 60.110 55.000 0.00 0.00 45.43 3.18 R
2260 6584 6.260936 GGTGTAGTTATCCCTCATGATGTTTG 59.739 42.308 0.00 0.00 0.00 2.93 R
2282 6606 5.089970 TCACTAGTTCATCTTGGATGGTG 57.910 43.478 0.00 7.34 0.00 4.17 R
2483 6809 2.489329 ACAATTTGGAAGATGGTGAGCG 59.511 45.455 0.78 0.00 0.00 5.03 R
2582 6917 0.657312 CAACGACTGCAAAGCACTCA 59.343 50.000 0.00 0.00 33.79 3.41 R
3222 7667 1.000955 GAAGAACTTCGCCTCACTGGA 59.999 52.381 0.00 0.00 38.35 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.445805 ACAGGAACGAAAAACACCATTGT 59.554 39.130 0.00 0.00 37.67 2.71
34 35 1.701847 ACACCATTGTTCTCTGGAGCT 59.298 47.619 0.00 0.00 36.35 4.09
38 39 3.204526 CCATTGTTCTCTGGAGCTGATC 58.795 50.000 0.00 0.00 34.24 2.92
125 126 4.712476 CATCTTAGTTTCCATCTCAGGGG 58.288 47.826 0.00 0.00 0.00 4.79
159 162 2.225068 AAGTCTCAGTTGTGTGTCGG 57.775 50.000 0.00 0.00 0.00 4.79
202 205 2.712709 TGTATTTCCCGATTTTCGCCA 58.287 42.857 0.00 0.00 38.82 5.69
223 226 5.749596 CACATTTGTGGAACTTGTGTAGA 57.250 39.130 2.69 0.00 42.10 2.59
224 227 5.751680 CACATTTGTGGAACTTGTGTAGAG 58.248 41.667 2.69 0.00 42.10 2.43
225 228 4.821805 ACATTTGTGGAACTTGTGTAGAGG 59.178 41.667 0.00 0.00 38.04 3.69
226 229 3.485463 TTGTGGAACTTGTGTAGAGGG 57.515 47.619 0.00 0.00 38.04 4.30
227 230 1.071699 TGTGGAACTTGTGTAGAGGGC 59.928 52.381 0.00 0.00 38.04 5.19
228 231 1.071699 GTGGAACTTGTGTAGAGGGCA 59.928 52.381 0.00 0.00 0.00 5.36
229 232 1.347707 TGGAACTTGTGTAGAGGGCAG 59.652 52.381 0.00 0.00 0.00 4.85
230 233 1.339151 GGAACTTGTGTAGAGGGCAGG 60.339 57.143 0.00 0.00 0.00 4.85
231 234 0.036875 AACTTGTGTAGAGGGCAGGC 59.963 55.000 0.00 0.00 0.00 4.85
232 235 1.078143 CTTGTGTAGAGGGCAGGCC 60.078 63.158 4.33 4.33 0.00 5.19
233 236 1.538876 TTGTGTAGAGGGCAGGCCT 60.539 57.895 17.36 17.36 36.10 5.19
234 237 1.841302 TTGTGTAGAGGGCAGGCCTG 61.841 60.000 29.34 29.34 36.10 4.85
235 238 2.688666 TGTAGAGGGCAGGCCTGG 60.689 66.667 33.46 15.81 36.10 4.45
244 247 3.706373 CAGGCCTGGCGTAGTGGT 61.706 66.667 26.14 0.00 0.00 4.16
245 248 3.706373 AGGCCTGGCGTAGTGGTG 61.706 66.667 12.95 0.00 0.00 4.17
246 249 3.702048 GGCCTGGCGTAGTGGTGA 61.702 66.667 13.40 0.00 0.00 4.02
247 250 2.345991 GCCTGGCGTAGTGGTGAA 59.654 61.111 1.35 0.00 0.00 3.18
248 251 1.741770 GCCTGGCGTAGTGGTGAAG 60.742 63.158 1.35 0.00 0.00 3.02
249 252 1.671742 CCTGGCGTAGTGGTGAAGT 59.328 57.895 0.00 0.00 0.00 3.01
250 253 0.389948 CCTGGCGTAGTGGTGAAGTC 60.390 60.000 0.00 0.00 0.00 3.01
251 254 0.389948 CTGGCGTAGTGGTGAAGTCC 60.390 60.000 0.00 0.00 0.00 3.85
252 255 0.830444 TGGCGTAGTGGTGAAGTCCT 60.830 55.000 0.00 0.00 0.00 3.85
253 256 0.108756 GGCGTAGTGGTGAAGTCCTC 60.109 60.000 0.00 0.00 0.00 3.71
254 257 0.108756 GCGTAGTGGTGAAGTCCTCC 60.109 60.000 0.00 0.00 0.00 4.30
255 258 0.531200 CGTAGTGGTGAAGTCCTCCC 59.469 60.000 0.00 0.00 0.00 4.30
256 259 0.903236 GTAGTGGTGAAGTCCTCCCC 59.097 60.000 0.00 0.00 0.00 4.81
257 260 0.490017 TAGTGGTGAAGTCCTCCCCA 59.510 55.000 0.00 0.00 0.00 4.96
258 261 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
259 262 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
260 263 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
261 264 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
262 265 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
263 266 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
264 267 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
265 268 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
266 269 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
267 270 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
268 271 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
269 272 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
270 273 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
271 274 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
272 275 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
273 276 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
274 277 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
275 278 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
276 279 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
277 280 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
278 281 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
279 282 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
280 283 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
281 284 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
282 285 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
283 286 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
284 287 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
285 288 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
296 299 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
297 300 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
298 301 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
299 302 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
300 303 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
301 304 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
302 305 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
303 306 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
304 307 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
305 308 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
306 309 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
307 310 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
308 311 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
309 312 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
319 322 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
320 323 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
321 324 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
322 325 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
323 326 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
324 327 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
325 328 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
326 329 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
327 330 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
328 331 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
329 332 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
330 333 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
331 334 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
332 335 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
333 336 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
334 337 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
335 338 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
336 339 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
337 340 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
338 341 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
339 342 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
340 343 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
341 344 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
342 345 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
343 346 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
344 347 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
345 348 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
346 349 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
347 350 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
348 351 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
349 352 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
350 353 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
351 354 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
353 356 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
354 357 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
355 358 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
356 359 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
357 360 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
358 361 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
359 362 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
368 371 1.972872 CACCTTGTGTGGAAGCTTCT 58.027 50.000 25.05 0.00 41.52 2.85
369 372 3.126001 CACCTTGTGTGGAAGCTTCTA 57.874 47.619 25.05 17.65 41.52 2.10
370 373 3.679389 CACCTTGTGTGGAAGCTTCTAT 58.321 45.455 25.05 0.04 41.52 1.98
371 374 3.438087 CACCTTGTGTGGAAGCTTCTATG 59.562 47.826 25.05 9.39 41.52 2.23
372 375 2.421424 CCTTGTGTGGAAGCTTCTATGC 59.579 50.000 25.05 15.92 0.00 3.14
373 376 2.857186 TGTGTGGAAGCTTCTATGCA 57.143 45.000 25.05 18.07 34.99 3.96
374 377 3.354948 TGTGTGGAAGCTTCTATGCAT 57.645 42.857 25.05 3.79 34.99 3.96
375 378 3.689347 TGTGTGGAAGCTTCTATGCATT 58.311 40.909 25.05 0.00 34.99 3.56
376 379 3.441222 TGTGTGGAAGCTTCTATGCATTG 59.559 43.478 25.05 2.26 34.99 2.82
377 380 3.018856 TGTGGAAGCTTCTATGCATTGG 58.981 45.455 25.05 0.00 34.99 3.16
378 381 2.360165 GTGGAAGCTTCTATGCATTGGG 59.640 50.000 25.05 1.11 34.99 4.12
379 382 2.025037 TGGAAGCTTCTATGCATTGGGT 60.025 45.455 25.05 0.00 34.99 4.51
380 383 2.620585 GGAAGCTTCTATGCATTGGGTC 59.379 50.000 25.05 0.75 34.99 4.46
381 384 3.549794 GAAGCTTCTATGCATTGGGTCT 58.450 45.455 19.44 0.00 34.99 3.85
382 385 2.928334 AGCTTCTATGCATTGGGTCTG 58.072 47.619 3.54 0.00 34.99 3.51
383 386 2.240667 AGCTTCTATGCATTGGGTCTGT 59.759 45.455 3.54 0.00 34.99 3.41
384 387 2.615912 GCTTCTATGCATTGGGTCTGTC 59.384 50.000 3.54 0.00 0.00 3.51
385 388 3.209410 CTTCTATGCATTGGGTCTGTCC 58.791 50.000 3.54 0.00 0.00 4.02
386 389 2.481441 TCTATGCATTGGGTCTGTCCT 58.519 47.619 3.54 0.00 36.25 3.85
387 390 2.846206 TCTATGCATTGGGTCTGTCCTT 59.154 45.455 3.54 0.00 36.25 3.36
388 391 2.610438 ATGCATTGGGTCTGTCCTTT 57.390 45.000 0.00 0.00 36.25 3.11
389 392 2.380064 TGCATTGGGTCTGTCCTTTT 57.620 45.000 0.00 0.00 36.25 2.27
390 393 2.676748 TGCATTGGGTCTGTCCTTTTT 58.323 42.857 0.00 0.00 36.25 1.94
391 394 2.364970 TGCATTGGGTCTGTCCTTTTTG 59.635 45.455 0.00 0.00 36.25 2.44
392 395 2.365293 GCATTGGGTCTGTCCTTTTTGT 59.635 45.455 0.00 0.00 36.25 2.83
393 396 3.799917 GCATTGGGTCTGTCCTTTTTGTG 60.800 47.826 0.00 0.00 36.25 3.33
394 397 2.065899 TGGGTCTGTCCTTTTTGTGG 57.934 50.000 0.00 0.00 36.25 4.17
395 398 1.566703 TGGGTCTGTCCTTTTTGTGGA 59.433 47.619 0.00 0.00 36.25 4.02
396 399 2.024846 TGGGTCTGTCCTTTTTGTGGAA 60.025 45.455 0.00 0.00 35.10 3.53
397 400 2.361119 GGGTCTGTCCTTTTTGTGGAAC 59.639 50.000 0.00 0.00 35.10 3.62
398 401 3.288092 GGTCTGTCCTTTTTGTGGAACT 58.712 45.455 0.00 0.00 38.04 3.01
399 402 3.699538 GGTCTGTCCTTTTTGTGGAACTT 59.300 43.478 0.00 0.00 38.04 2.66
400 403 4.440112 GGTCTGTCCTTTTTGTGGAACTTG 60.440 45.833 0.00 0.00 38.04 3.16
401 404 4.157840 GTCTGTCCTTTTTGTGGAACTTGT 59.842 41.667 0.00 0.00 38.04 3.16
425 428 1.877443 GGACCGTGCTGTAATGTTGTT 59.123 47.619 0.00 0.00 0.00 2.83
445 448 1.532437 TGTTGCACTCTCATTTGAGCG 59.468 47.619 2.60 0.00 41.80 5.03
446 449 1.800586 GTTGCACTCTCATTTGAGCGA 59.199 47.619 4.66 0.00 41.80 4.93
447 450 2.391616 TGCACTCTCATTTGAGCGAT 57.608 45.000 4.66 0.00 41.80 4.58
559 574 2.334838 GCTGACAACCACGTAGTTAGG 58.665 52.381 0.00 0.00 41.61 2.69
562 577 1.274447 GACAACCACGTAGTTAGGGCT 59.726 52.381 0.00 0.00 41.61 5.19
577 592 1.959282 AGGGCTGAAAGTTGAAAGCTG 59.041 47.619 0.00 0.00 35.93 4.24
591 606 1.267574 AAGCTGCTCCCTCCGATTCA 61.268 55.000 1.00 0.00 0.00 2.57
601 616 5.279506 GCTCCCTCCGATTCATAATACTTGA 60.280 44.000 0.00 0.00 0.00 3.02
640 655 7.694784 TGTTCAAAACGTCTTTCAGTTTGATAC 59.305 33.333 9.43 10.42 40.07 2.24
687 702 8.867112 ACGTCTAAAACATGTACTGTATATGG 57.133 34.615 22.94 9.41 36.98 2.74
688 703 8.472413 ACGTCTAAAACATGTACTGTATATGGT 58.528 33.333 22.94 16.82 36.98 3.55
689 704 8.965172 CGTCTAAAACATGTACTGTATATGGTC 58.035 37.037 22.94 8.26 36.98 4.02
690 705 8.965172 GTCTAAAACATGTACTGTATATGGTCG 58.035 37.037 22.94 12.23 36.98 4.79
691 706 8.905850 TCTAAAACATGTACTGTATATGGTCGA 58.094 33.333 22.94 13.82 36.98 4.20
692 707 9.692749 CTAAAACATGTACTGTATATGGTCGAT 57.307 33.333 22.94 12.44 36.98 3.59
693 708 7.946655 AAACATGTACTGTATATGGTCGATG 57.053 36.000 22.94 4.16 36.98 3.84
694 709 6.650427 ACATGTACTGTATATGGTCGATGT 57.350 37.500 22.94 4.69 35.91 3.06
695 710 7.754851 ACATGTACTGTATATGGTCGATGTA 57.245 36.000 22.94 0.00 35.91 2.29
696 711 7.817641 ACATGTACTGTATATGGTCGATGTAG 58.182 38.462 22.94 1.15 35.91 2.74
697 712 7.447545 ACATGTACTGTATATGGTCGATGTAGT 59.552 37.037 22.94 1.73 35.91 2.73
700 715 9.511272 TGTACTGTATATGGTCGATGTAGTAAT 57.489 33.333 0.00 0.00 0.00 1.89
703 718 9.511272 ACTGTATATGGTCGATGTAGTAATACA 57.489 33.333 5.37 5.37 0.00 2.29
775 790 8.195436 TCTGATATTTTGGAACGGAGTAAGTAG 58.805 37.037 0.00 0.00 45.00 2.57
785 800 6.094603 GGAACGGAGTAAGTAGTTCATAGTGA 59.905 42.308 9.01 0.00 45.00 3.41
791 806 7.411486 AGTAAGTAGTTCATAGTGATGCTGT 57.589 36.000 0.00 0.00 32.62 4.40
809 825 3.253188 GCTGTCATAAGGTTGCAGTTGAA 59.747 43.478 0.00 0.00 0.00 2.69
816 832 1.410153 AGGTTGCAGTTGAAAAGCAGG 59.590 47.619 0.00 0.00 39.72 4.85
819 835 3.255642 GGTTGCAGTTGAAAAGCAGGATA 59.744 43.478 0.00 0.00 39.72 2.59
851 889 7.672983 AGAACAGTAATTAACAGTGATGGTG 57.327 36.000 0.00 0.00 0.00 4.17
852 890 7.224297 AGAACAGTAATTAACAGTGATGGTGT 58.776 34.615 0.00 0.00 0.00 4.16
853 891 7.387948 AGAACAGTAATTAACAGTGATGGTGTC 59.612 37.037 0.00 0.00 0.00 3.67
854 892 5.637810 ACAGTAATTAACAGTGATGGTGTCG 59.362 40.000 0.00 0.00 0.00 4.35
855 893 5.867174 CAGTAATTAACAGTGATGGTGTCGA 59.133 40.000 0.00 0.00 0.00 4.20
856 894 6.535150 CAGTAATTAACAGTGATGGTGTCGAT 59.465 38.462 0.00 0.00 0.00 3.59
862 900 5.854010 ACAGTGATGGTGTCGATAATAGT 57.146 39.130 0.00 0.00 0.00 2.12
864 903 5.127194 ACAGTGATGGTGTCGATAATAGTGT 59.873 40.000 0.00 0.00 0.00 3.55
868 907 8.421784 AGTGATGGTGTCGATAATAGTGTAAAT 58.578 33.333 0.00 0.00 0.00 1.40
886 925 7.646526 AGTGTAAATAAAAACTGAAGAAACGCC 59.353 33.333 0.00 0.00 0.00 5.68
893 932 6.930667 AAAACTGAAGAAACGCCTAAGTTA 57.069 33.333 0.00 0.00 33.41 2.24
894 933 5.919272 AACTGAAGAAACGCCTAAGTTAC 57.081 39.130 0.00 0.00 33.41 2.50
895 934 4.952460 ACTGAAGAAACGCCTAAGTTACA 58.048 39.130 0.00 0.00 33.41 2.41
896 935 4.989168 ACTGAAGAAACGCCTAAGTTACAG 59.011 41.667 0.00 0.00 33.41 2.74
897 936 5.204409 TGAAGAAACGCCTAAGTTACAGA 57.796 39.130 0.00 0.00 33.41 3.41
899 938 5.694910 TGAAGAAACGCCTAAGTTACAGAAG 59.305 40.000 0.00 0.00 33.41 2.85
900 939 3.995048 AGAAACGCCTAAGTTACAGAAGC 59.005 43.478 0.00 0.00 33.41 3.86
902 941 2.960819 ACGCCTAAGTTACAGAAGCAG 58.039 47.619 0.00 0.00 0.00 4.24
907 946 5.163683 CGCCTAAGTTACAGAAGCAGTAGTA 60.164 44.000 0.00 0.00 0.00 1.82
910 949 7.577236 GCCTAAGTTACAGAAGCAGTAGTACTT 60.577 40.741 0.00 0.00 31.28 2.24
911 950 8.954350 CCTAAGTTACAGAAGCAGTAGTACTTA 58.046 37.037 0.00 0.00 29.89 2.24
914 953 8.174733 AGTTACAGAAGCAGTAGTACTTAACA 57.825 34.615 15.87 0.00 0.00 2.41
915 954 8.298140 AGTTACAGAAGCAGTAGTACTTAACAG 58.702 37.037 15.87 0.00 0.00 3.16
916 955 6.651975 ACAGAAGCAGTAGTACTTAACAGT 57.348 37.500 0.00 0.00 36.99 3.55
951 1037 1.061131 CGCCTTGCTTTGATACTGTCG 59.939 52.381 0.00 0.00 0.00 4.35
974 1060 5.176223 CGGTCTGTATTTCGTGTGTTTACTT 59.824 40.000 0.00 0.00 0.00 2.24
995 1081 1.289109 ATCCCGTTCGTGCGAAACAG 61.289 55.000 8.66 4.11 35.75 3.16
1001 1087 1.069906 GTTCGTGCGAAACAGCTGAAT 60.070 47.619 23.35 8.38 35.74 2.57
1024 1110 2.001361 TTCCGTCGGAAGAGCGATCC 62.001 60.000 22.76 0.00 43.49 3.36
1048 2084 2.738521 GCCAAGCACGCGAGAAGA 60.739 61.111 15.93 0.00 0.00 2.87
1074 2110 0.107945 GAGAGATGGCAAAGGCGAGT 60.108 55.000 0.00 0.00 42.47 4.18
1345 2387 2.197324 CGGAGGAGGAGGAGGAGG 59.803 72.222 0.00 0.00 0.00 4.30
1347 2389 1.541672 GGAGGAGGAGGAGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
1350 2392 1.760480 GGAGGAGGAGGAGGAGCAC 60.760 68.421 0.00 0.00 0.00 4.40
1401 2739 4.029809 AAGTACTGGGCCCACCGC 62.030 66.667 24.45 13.66 44.64 5.68
1687 4909 1.832608 CGGTGGAGATCGATCCCCA 60.833 63.158 23.45 23.45 38.72 4.96
1688 4910 1.188219 CGGTGGAGATCGATCCCCAT 61.188 60.000 28.72 8.27 37.03 4.00
1712 4934 3.426568 GAGCTGGCGAGGCACAAC 61.427 66.667 0.00 0.00 0.00 3.32
1748 4970 3.384668 CGTGGAGCATATGATCGACTTT 58.615 45.455 26.53 0.00 37.10 2.66
1772 4994 0.323629 TCGGCGATTTCTTCCACCTT 59.676 50.000 4.99 0.00 0.00 3.50
1812 5034 7.919621 AGGTAGTATATGCTCGTTCAGTTTTAC 59.080 37.037 0.00 0.00 0.00 2.01
1833 5058 5.862924 ACGATGAACAAGACCACATTTAG 57.137 39.130 0.00 0.00 0.00 1.85
1834 5059 5.305585 ACGATGAACAAGACCACATTTAGT 58.694 37.500 0.00 0.00 0.00 2.24
1835 5060 6.460781 ACGATGAACAAGACCACATTTAGTA 58.539 36.000 0.00 0.00 0.00 1.82
1846 5071 9.716531 AAGACCACATTTAGTAGGTTAGTTAAC 57.283 33.333 0.00 0.00 33.59 2.01
1918 5145 6.211184 TGAAATGATATGAAACCAGCCAAACT 59.789 34.615 0.00 0.00 0.00 2.66
1940 5167 7.182817 ACTAGTGTATGCTTCCAACTATGAA 57.817 36.000 0.00 0.00 0.00 2.57
1950 5180 3.538591 TCCAACTATGAAGCATGCTCAG 58.461 45.455 22.93 17.26 0.00 3.35
1951 5181 3.054875 TCCAACTATGAAGCATGCTCAGT 60.055 43.478 22.93 17.89 0.00 3.41
1952 5182 3.693085 CCAACTATGAAGCATGCTCAGTT 59.307 43.478 22.93 22.13 0.00 3.16
1953 5183 4.877823 CCAACTATGAAGCATGCTCAGTTA 59.122 41.667 22.93 9.72 0.00 2.24
1954 5184 5.220739 CCAACTATGAAGCATGCTCAGTTAC 60.221 44.000 22.93 9.03 0.00 2.50
1955 5185 4.446371 ACTATGAAGCATGCTCAGTTACC 58.554 43.478 22.93 5.18 0.00 2.85
1956 5186 2.857186 TGAAGCATGCTCAGTTACCA 57.143 45.000 22.93 7.69 0.00 3.25
1957 5187 3.354948 TGAAGCATGCTCAGTTACCAT 57.645 42.857 22.93 0.59 0.00 3.55
1958 5188 3.011818 TGAAGCATGCTCAGTTACCATG 58.988 45.455 22.93 0.00 39.38 3.66
1959 5189 3.273434 GAAGCATGCTCAGTTACCATGA 58.727 45.455 22.93 0.00 38.84 3.07
1961 5191 3.894759 AGCATGCTCAGTTACCATGAAT 58.105 40.909 16.30 0.00 38.84 2.57
2022 5271 5.772825 TTCTGCAAAATTAAGCTGTCAGT 57.227 34.783 0.93 0.00 0.00 3.41
2052 5301 6.107901 AGGATTCTACCTGCATCAACTATC 57.892 41.667 0.00 0.00 39.01 2.08
2053 5302 5.012561 AGGATTCTACCTGCATCAACTATCC 59.987 44.000 0.00 0.00 39.01 2.59
2054 5303 5.012561 GGATTCTACCTGCATCAACTATCCT 59.987 44.000 0.00 0.00 0.00 3.24
2055 5304 4.944619 TCTACCTGCATCAACTATCCTG 57.055 45.455 0.00 0.00 0.00 3.86
2056 5305 2.338577 ACCTGCATCAACTATCCTGC 57.661 50.000 0.00 0.00 35.21 4.85
2057 5306 1.133976 ACCTGCATCAACTATCCTGCC 60.134 52.381 0.00 0.00 33.70 4.85
2058 5307 1.602311 CTGCATCAACTATCCTGCCC 58.398 55.000 0.00 0.00 33.70 5.36
2061 5310 1.133668 GCATCAACTATCCTGCCCCTT 60.134 52.381 0.00 0.00 0.00 3.95
2062 5311 2.856222 CATCAACTATCCTGCCCCTTC 58.144 52.381 0.00 0.00 0.00 3.46
2063 5312 0.830648 TCAACTATCCTGCCCCTTCG 59.169 55.000 0.00 0.00 0.00 3.79
2064 5313 0.541863 CAACTATCCTGCCCCTTCGT 59.458 55.000 0.00 0.00 0.00 3.85
2065 5314 1.065418 CAACTATCCTGCCCCTTCGTT 60.065 52.381 0.00 0.00 0.00 3.85
2067 5316 2.690840 ACTATCCTGCCCCTTCGTTAT 58.309 47.619 0.00 0.00 0.00 1.89
2070 5319 1.868713 TCCTGCCCCTTCGTTATACA 58.131 50.000 0.00 0.00 0.00 2.29
2114 6436 0.112412 ATTGACCTGGCCCTTCGTTT 59.888 50.000 0.00 0.00 0.00 3.60
2116 6438 0.536460 TGACCTGGCCCTTCGTTTTC 60.536 55.000 0.00 0.00 0.00 2.29
2117 6439 0.536460 GACCTGGCCCTTCGTTTTCA 60.536 55.000 0.00 0.00 0.00 2.69
2128 6450 5.433526 CCCTTCGTTTTCACCATTATCCTA 58.566 41.667 0.00 0.00 0.00 2.94
2142 6464 8.796475 CACCATTATCCTATCAACCCATTTTAG 58.204 37.037 0.00 0.00 0.00 1.85
2181 6505 2.548920 GCAACACTGCTCAAGGTACTCT 60.549 50.000 0.00 0.00 45.74 3.24
2187 6511 4.629200 CACTGCTCAAGGTACTCTGAATTC 59.371 45.833 0.00 0.00 38.49 2.17
2208 6532 7.704789 ATTCAACTTGTCAATTGCTTTCTTC 57.295 32.000 0.00 0.00 0.00 2.87
2260 6584 7.333921 CCTCTTTAGTATGATGAGATTGGCATC 59.666 40.741 0.00 0.00 41.87 3.91
2282 6606 7.308229 GCATCAAACATCATGAGGGATAACTAC 60.308 40.741 12.66 0.00 0.00 2.73
2483 6809 2.119029 GCCAAAGGACGGGTATGCC 61.119 63.158 0.00 0.00 0.00 4.40
2493 6822 1.598130 GGGTATGCCGCTCACCATC 60.598 63.158 13.77 0.00 33.78 3.51
2513 6842 5.711976 CCATCTTCCAAATTGTCCTTACACT 59.288 40.000 0.00 0.00 34.61 3.55
2516 6846 6.472887 TCTTCCAAATTGTCCTTACACTAGG 58.527 40.000 0.00 0.00 34.61 3.02
2582 6917 2.988010 TGGAAGCGAGCATACTGATT 57.012 45.000 0.00 0.00 0.00 2.57
2630 6965 6.180472 ACAATTGTAGCCTTGTAGCTGTTAT 58.820 36.000 9.97 0.00 44.67 1.89
2725 7060 4.145052 GGGTGTTGGATGAGGGATATTTC 58.855 47.826 0.00 0.00 0.00 2.17
2819 7163 8.477256 CAAACATCCCCTTATTGTTACATTCAT 58.523 33.333 0.00 0.00 33.44 2.57
3022 7368 4.296056 TCCTCCCCTAGATTTTGAGGTAC 58.704 47.826 0.00 0.00 42.58 3.34
3222 7667 3.902881 ATCGAAGTTGAGAGCAAGGAT 57.097 42.857 0.00 0.00 34.01 3.24
3440 7885 2.024464 TCGAATTGGGTTCCATGGGATT 60.024 45.455 13.02 0.00 31.53 3.01
3497 7942 0.181350 ATCTCCTGGTTCCCATTCGC 59.819 55.000 0.00 0.00 30.82 4.70
3512 7957 0.614697 TTCGCATCCCTGGAGTCAGA 60.615 55.000 0.00 0.00 43.49 3.27
3643 8088 9.753674 TGGAATCAAAATCTTTAGTTGGATAGT 57.246 29.630 0.00 0.00 0.00 2.12
3663 8108 0.690192 TACCATATGGGGACGCATGG 59.310 55.000 25.55 9.27 45.26 3.66
3761 8212 3.565307 ACAAATGGAAGAAGAAGCACCA 58.435 40.909 0.00 0.00 35.09 4.17
3781 8232 5.070981 CACCAGTGGGAACATCTATACTGAT 59.929 44.000 15.21 0.00 46.14 2.90
3797 8248 3.686016 ACTGATGAATTAAACGTGGCCT 58.314 40.909 3.32 0.00 0.00 5.19
3850 8301 5.115480 GGACATTTCACACCAATTTGTTGT 58.885 37.500 0.00 0.00 0.00 3.32
3868 8319 1.004277 TGTCAGCCAAGGAACCCATAC 59.996 52.381 0.00 0.00 0.00 2.39
3888 8339 3.149196 ACTGGTAGCATGTTGTTTCCTG 58.851 45.455 0.00 0.00 0.00 3.86
3896 8347 1.790755 TGTTGTTTCCTGTCGGATCG 58.209 50.000 0.00 0.00 39.58 3.69
3927 8378 1.013596 CGCAGTGTTGTTTCCTGTCA 58.986 50.000 0.00 0.00 0.00 3.58
3932 8383 4.129380 CAGTGTTGTTTCCTGTCAGATCA 58.871 43.478 0.00 0.00 0.00 2.92
4089 8542 3.297134 TTGACTTGCTCTTTCCCAACT 57.703 42.857 0.00 0.00 0.00 3.16
4104 8557 4.531854 TCCCAACTTGTGACAAGATGAAA 58.468 39.130 29.54 17.43 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.040445 ACAATGGTGTTTTTCGTTCCTG 57.960 40.909 0.00 0.00 32.58 3.86
14 15 1.701847 AGCTCCAGAGAACAATGGTGT 59.298 47.619 0.00 0.00 40.75 4.16
15 16 2.082231 CAGCTCCAGAGAACAATGGTG 58.918 52.381 0.00 0.00 37.84 4.17
16 17 1.980765 TCAGCTCCAGAGAACAATGGT 59.019 47.619 0.00 0.00 37.84 3.55
17 18 2.775911 TCAGCTCCAGAGAACAATGG 57.224 50.000 0.00 0.00 37.97 3.16
18 19 2.864946 CGATCAGCTCCAGAGAACAATG 59.135 50.000 0.00 0.00 0.00 2.82
19 20 2.741228 GCGATCAGCTCCAGAGAACAAT 60.741 50.000 0.00 0.00 44.04 2.71
34 35 3.050166 GCAATTGGTGCGGCGATCA 62.050 57.895 12.98 1.46 45.10 2.92
65 66 3.211045 TGGCTGAGTTCTTGGTTTACAC 58.789 45.455 0.00 0.00 0.00 2.90
135 138 4.026475 CGACACACAACTGAGACTTTCTTC 60.026 45.833 0.00 0.00 0.00 2.87
136 139 3.865745 CGACACACAACTGAGACTTTCTT 59.134 43.478 0.00 0.00 0.00 2.52
137 140 3.448686 CGACACACAACTGAGACTTTCT 58.551 45.455 0.00 0.00 0.00 2.52
138 141 2.540101 CCGACACACAACTGAGACTTTC 59.460 50.000 0.00 0.00 0.00 2.62
144 147 1.860950 CAACTCCGACACACAACTGAG 59.139 52.381 0.00 0.00 0.00 3.35
190 193 1.984990 CACAAATGTGGCGAAAATCGG 59.015 47.619 5.63 0.00 42.10 4.18
202 205 4.821805 CCTCTACACAAGTTCCACAAATGT 59.178 41.667 0.00 0.00 0.00 2.71
216 219 2.122729 AGGCCTGCCCTCTACACA 59.877 61.111 3.11 0.00 41.21 3.72
219 222 4.182433 GCCAGGCCTGCCCTCTAC 62.182 72.222 28.39 5.94 44.09 2.59
227 230 3.706373 ACCACTACGCCAGGCCTG 61.706 66.667 26.87 26.87 0.00 4.85
228 231 3.706373 CACCACTACGCCAGGCCT 61.706 66.667 5.63 0.00 0.00 5.19
229 232 3.248446 TTCACCACTACGCCAGGCC 62.248 63.158 5.63 0.00 0.00 5.19
230 233 1.741770 CTTCACCACTACGCCAGGC 60.742 63.158 0.00 0.00 0.00 4.85
231 234 0.389948 GACTTCACCACTACGCCAGG 60.390 60.000 0.00 0.00 0.00 4.45
232 235 0.389948 GGACTTCACCACTACGCCAG 60.390 60.000 0.00 0.00 0.00 4.85
233 236 0.830444 AGGACTTCACCACTACGCCA 60.830 55.000 0.00 0.00 0.00 5.69
234 237 0.108756 GAGGACTTCACCACTACGCC 60.109 60.000 0.00 0.00 0.00 5.68
235 238 0.108756 GGAGGACTTCACCACTACGC 60.109 60.000 0.00 0.00 0.00 4.42
236 239 0.531200 GGGAGGACTTCACCACTACG 59.469 60.000 0.00 0.00 0.00 3.51
243 246 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
244 247 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
245 248 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
246 249 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
247 250 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
248 251 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
249 252 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
260 263 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
261 264 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
262 265 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
263 266 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
264 267 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
265 268 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
266 269 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
267 270 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
268 271 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
269 272 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
278 281 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
279 282 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
280 283 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
281 284 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
282 285 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
283 286 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
284 287 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
285 288 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
287 290 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
288 291 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
289 292 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
290 293 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
301 304 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
302 305 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
303 306 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
304 307 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
305 308 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
306 309 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
307 310 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
308 311 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
309 312 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
310 313 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
311 314 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
312 315 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
313 316 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
314 317 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
315 318 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
316 319 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
317 320 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
318 321 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
319 322 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
320 323 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
321 324 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
322 325 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
323 326 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
324 327 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
325 328 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
326 329 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
327 330 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
328 331 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
329 332 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
330 333 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
331 334 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
332 335 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
333 336 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
334 337 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
336 339 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
337 340 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
338 341 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
339 342 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
340 343 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
341 344 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
342 345 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
350 353 3.679389 CATAGAAGCTTCCACACAAGGT 58.321 45.455 22.81 3.61 35.59 3.50
351 354 2.421424 GCATAGAAGCTTCCACACAAGG 59.579 50.000 22.81 5.06 0.00 3.61
352 355 3.076621 TGCATAGAAGCTTCCACACAAG 58.923 45.455 22.81 7.44 34.99 3.16
353 356 3.138884 TGCATAGAAGCTTCCACACAA 57.861 42.857 22.81 2.15 34.99 3.33
354 357 2.857186 TGCATAGAAGCTTCCACACA 57.143 45.000 22.81 13.46 34.99 3.72
355 358 3.181493 CCAATGCATAGAAGCTTCCACAC 60.181 47.826 22.81 11.03 34.99 3.82
356 359 3.018856 CCAATGCATAGAAGCTTCCACA 58.981 45.455 22.81 15.42 34.99 4.17
357 360 2.360165 CCCAATGCATAGAAGCTTCCAC 59.640 50.000 22.81 10.33 34.99 4.02
358 361 2.025037 ACCCAATGCATAGAAGCTTCCA 60.025 45.455 22.81 10.30 34.99 3.53
359 362 2.620585 GACCCAATGCATAGAAGCTTCC 59.379 50.000 22.81 8.12 34.99 3.46
360 363 3.314635 CAGACCCAATGCATAGAAGCTTC 59.685 47.826 19.11 19.11 34.99 3.86
361 364 3.285484 CAGACCCAATGCATAGAAGCTT 58.715 45.455 0.00 0.00 34.99 3.74
362 365 2.240667 ACAGACCCAATGCATAGAAGCT 59.759 45.455 0.00 0.00 34.99 3.74
363 366 2.615912 GACAGACCCAATGCATAGAAGC 59.384 50.000 0.00 0.00 0.00 3.86
364 367 3.118112 AGGACAGACCCAATGCATAGAAG 60.118 47.826 0.00 0.00 40.05 2.85
365 368 2.846206 AGGACAGACCCAATGCATAGAA 59.154 45.455 0.00 0.00 40.05 2.10
366 369 2.481441 AGGACAGACCCAATGCATAGA 58.519 47.619 0.00 0.00 40.05 1.98
367 370 3.287867 AAGGACAGACCCAATGCATAG 57.712 47.619 0.00 0.00 40.05 2.23
368 371 3.737559 AAAGGACAGACCCAATGCATA 57.262 42.857 0.00 0.00 40.05 3.14
369 372 2.610438 AAAGGACAGACCCAATGCAT 57.390 45.000 0.00 0.00 40.05 3.96
370 373 2.364970 CAAAAAGGACAGACCCAATGCA 59.635 45.455 0.00 0.00 40.05 3.96
371 374 2.365293 ACAAAAAGGACAGACCCAATGC 59.635 45.455 0.00 0.00 40.05 3.56
372 375 3.243839 CCACAAAAAGGACAGACCCAATG 60.244 47.826 0.00 0.00 40.05 2.82
373 376 2.965147 CCACAAAAAGGACAGACCCAAT 59.035 45.455 0.00 0.00 40.05 3.16
374 377 2.024846 TCCACAAAAAGGACAGACCCAA 60.025 45.455 0.00 0.00 40.05 4.12
375 378 1.566703 TCCACAAAAAGGACAGACCCA 59.433 47.619 0.00 0.00 40.05 4.51
376 379 2.358322 TCCACAAAAAGGACAGACCC 57.642 50.000 0.00 0.00 40.05 4.46
377 380 3.288092 AGTTCCACAAAAAGGACAGACC 58.712 45.455 0.00 0.00 34.19 3.85
378 381 4.157840 ACAAGTTCCACAAAAAGGACAGAC 59.842 41.667 0.00 0.00 34.19 3.51
379 382 4.157656 CACAAGTTCCACAAAAAGGACAGA 59.842 41.667 0.00 0.00 34.19 3.41
380 383 4.082245 ACACAAGTTCCACAAAAAGGACAG 60.082 41.667 0.00 0.00 34.19 3.51
381 384 3.829601 ACACAAGTTCCACAAAAAGGACA 59.170 39.130 0.00 0.00 34.19 4.02
382 385 4.173256 CACACAAGTTCCACAAAAAGGAC 58.827 43.478 0.00 0.00 34.19 3.85
383 386 3.194542 CCACACAAGTTCCACAAAAAGGA 59.805 43.478 0.00 0.00 0.00 3.36
384 387 3.520569 CCACACAAGTTCCACAAAAAGG 58.479 45.455 0.00 0.00 0.00 3.11
385 388 3.194542 TCCCACACAAGTTCCACAAAAAG 59.805 43.478 0.00 0.00 0.00 2.27
386 389 3.056465 GTCCCACACAAGTTCCACAAAAA 60.056 43.478 0.00 0.00 0.00 1.94
387 390 2.494073 GTCCCACACAAGTTCCACAAAA 59.506 45.455 0.00 0.00 0.00 2.44
388 391 2.096248 GTCCCACACAAGTTCCACAAA 58.904 47.619 0.00 0.00 0.00 2.83
389 392 1.683629 GGTCCCACACAAGTTCCACAA 60.684 52.381 0.00 0.00 0.00 3.33
390 393 0.106918 GGTCCCACACAAGTTCCACA 60.107 55.000 0.00 0.00 0.00 4.17
391 394 1.164041 CGGTCCCACACAAGTTCCAC 61.164 60.000 0.00 0.00 0.00 4.02
392 395 1.147376 CGGTCCCACACAAGTTCCA 59.853 57.895 0.00 0.00 0.00 3.53
393 396 1.147600 ACGGTCCCACACAAGTTCC 59.852 57.895 0.00 0.00 0.00 3.62
394 397 1.782028 GCACGGTCCCACACAAGTTC 61.782 60.000 0.00 0.00 0.00 3.01
395 398 1.822186 GCACGGTCCCACACAAGTT 60.822 57.895 0.00 0.00 0.00 2.66
396 399 2.203153 GCACGGTCCCACACAAGT 60.203 61.111 0.00 0.00 0.00 3.16
397 400 2.111043 AGCACGGTCCCACACAAG 59.889 61.111 0.00 0.00 0.00 3.16
398 401 1.687297 TACAGCACGGTCCCACACAA 61.687 55.000 0.00 0.00 0.00 3.33
399 402 1.687297 TTACAGCACGGTCCCACACA 61.687 55.000 0.00 0.00 0.00 3.72
400 403 0.321298 ATTACAGCACGGTCCCACAC 60.321 55.000 0.00 0.00 0.00 3.82
401 404 0.321210 CATTACAGCACGGTCCCACA 60.321 55.000 0.00 0.00 0.00 4.17
425 428 1.532437 CGCTCAAATGAGAGTGCAACA 59.468 47.619 14.43 0.00 44.74 3.33
481 487 5.928839 TGTTTAGCAAACACACACAAACAAT 59.071 32.000 9.46 0.00 45.79 2.71
497 503 4.261572 GGAGAAACATTGCACTGTTTAGCA 60.262 41.667 28.56 0.00 46.50 3.49
538 553 2.334838 CTAACTACGTGGTTGTCAGCC 58.665 52.381 25.49 0.00 0.00 4.85
544 559 1.274167 TCAGCCCTAACTACGTGGTTG 59.726 52.381 25.49 15.28 0.00 3.77
546 561 1.636148 TTCAGCCCTAACTACGTGGT 58.364 50.000 0.00 0.00 0.00 4.16
550 565 3.921677 TCAACTTTCAGCCCTAACTACG 58.078 45.455 0.00 0.00 0.00 3.51
559 574 1.339291 AGCAGCTTTCAACTTTCAGCC 59.661 47.619 0.00 0.00 32.25 4.85
562 577 1.956477 GGGAGCAGCTTTCAACTTTCA 59.044 47.619 0.00 0.00 0.00 2.69
577 592 4.810191 AGTATTATGAATCGGAGGGAGC 57.190 45.455 0.00 0.00 0.00 4.70
591 606 9.740710 AACAAACCTAGAGCTTTCAAGTATTAT 57.259 29.630 0.00 0.00 0.00 1.28
601 616 5.124936 ACGTTTTGAACAAACCTAGAGCTTT 59.875 36.000 0.00 0.00 0.00 3.51
684 699 9.832445 AGAAAAATGTATTACTACATCGACCAT 57.168 29.630 6.23 0.00 45.73 3.55
725 740 8.887393 AGAAGTTCCAGGTTTATCCTAAAGTAA 58.113 33.333 0.00 0.00 46.24 2.24
726 741 8.319146 CAGAAGTTCCAGGTTTATCCTAAAGTA 58.681 37.037 0.00 0.00 46.24 2.24
727 742 7.017254 TCAGAAGTTCCAGGTTTATCCTAAAGT 59.983 37.037 0.00 0.00 46.24 2.66
728 743 7.394816 TCAGAAGTTCCAGGTTTATCCTAAAG 58.605 38.462 0.00 0.00 46.24 1.85
729 744 7.324388 TCAGAAGTTCCAGGTTTATCCTAAA 57.676 36.000 0.00 0.00 46.24 1.85
730 745 6.945636 TCAGAAGTTCCAGGTTTATCCTAA 57.054 37.500 0.00 0.00 46.24 2.69
731 746 8.798975 ATATCAGAAGTTCCAGGTTTATCCTA 57.201 34.615 0.00 0.00 46.24 2.94
733 748 8.753497 AAATATCAGAAGTTCCAGGTTTATCC 57.247 34.615 0.00 0.00 0.00 2.59
735 750 8.971073 CCAAAATATCAGAAGTTCCAGGTTTAT 58.029 33.333 0.00 0.00 0.00 1.40
736 751 8.167392 TCCAAAATATCAGAAGTTCCAGGTTTA 58.833 33.333 0.00 0.00 0.00 2.01
739 754 6.139679 TCCAAAATATCAGAAGTTCCAGGT 57.860 37.500 0.00 0.00 0.00 4.00
740 755 6.403636 CGTTCCAAAATATCAGAAGTTCCAGG 60.404 42.308 0.00 0.00 0.00 4.45
741 756 6.403636 CCGTTCCAAAATATCAGAAGTTCCAG 60.404 42.308 0.00 0.00 0.00 3.86
742 757 5.414454 CCGTTCCAAAATATCAGAAGTTCCA 59.586 40.000 0.00 0.00 0.00 3.53
744 759 6.371825 ACTCCGTTCCAAAATATCAGAAGTTC 59.628 38.462 0.00 0.00 0.00 3.01
754 769 7.669427 TGAACTACTTACTCCGTTCCAAAATA 58.331 34.615 0.00 0.00 35.97 1.40
775 790 6.051717 ACCTTATGACAGCATCACTATGAAC 58.948 40.000 0.00 0.00 41.24 3.18
785 800 3.077484 ACTGCAACCTTATGACAGCAT 57.923 42.857 0.00 0.00 38.54 3.79
791 806 4.340666 TGCTTTTCAACTGCAACCTTATGA 59.659 37.500 0.00 0.00 33.48 2.15
862 900 7.708998 AGGCGTTTCTTCAGTTTTTATTTACA 58.291 30.769 0.00 0.00 0.00 2.41
864 903 9.887406 CTTAGGCGTTTCTTCAGTTTTTATTTA 57.113 29.630 0.00 0.00 0.00 1.40
868 907 6.930667 ACTTAGGCGTTTCTTCAGTTTTTA 57.069 33.333 0.00 0.00 0.00 1.52
881 920 3.244112 ACTGCTTCTGTAACTTAGGCGTT 60.244 43.478 0.00 0.00 0.00 4.84
882 921 2.299297 ACTGCTTCTGTAACTTAGGCGT 59.701 45.455 0.00 0.00 0.00 5.68
893 932 6.040616 ACACTGTTAAGTACTACTGCTTCTGT 59.959 38.462 0.00 0.00 33.79 3.41
894 933 6.363626 CACACTGTTAAGTACTACTGCTTCTG 59.636 42.308 0.00 0.00 33.79 3.02
895 934 6.448006 CACACTGTTAAGTACTACTGCTTCT 58.552 40.000 0.00 0.00 33.79 2.85
896 935 5.634020 CCACACTGTTAAGTACTACTGCTTC 59.366 44.000 0.00 0.00 33.79 3.86
897 936 5.510861 CCCACACTGTTAAGTACTACTGCTT 60.511 44.000 0.00 0.00 33.79 3.91
899 938 4.021719 TCCCACACTGTTAAGTACTACTGC 60.022 45.833 0.00 0.00 33.79 4.40
900 939 5.717078 TCCCACACTGTTAAGTACTACTG 57.283 43.478 0.00 0.00 33.79 2.74
902 941 6.094193 ACTTCCCACACTGTTAAGTACTAC 57.906 41.667 0.00 0.00 33.79 2.73
907 946 4.497291 TGAACTTCCCACACTGTTAAGT 57.503 40.909 0.00 0.00 36.98 2.24
910 949 3.556213 CGGATGAACTTCCCACACTGTTA 60.556 47.826 0.00 0.00 31.61 2.41
911 950 2.810400 CGGATGAACTTCCCACACTGTT 60.810 50.000 0.00 0.00 31.61 3.16
912 951 1.270839 CGGATGAACTTCCCACACTGT 60.271 52.381 0.00 0.00 31.61 3.55
913 952 1.442769 CGGATGAACTTCCCACACTG 58.557 55.000 0.00 0.00 31.61 3.66
914 953 0.321653 GCGGATGAACTTCCCACACT 60.322 55.000 0.00 0.00 31.61 3.55
915 954 1.305930 GGCGGATGAACTTCCCACAC 61.306 60.000 0.00 0.00 31.61 3.82
916 955 1.002624 GGCGGATGAACTTCCCACA 60.003 57.895 0.00 0.00 31.61 4.17
951 1037 6.201425 TGAAGTAAACACACGAAATACAGACC 59.799 38.462 0.00 0.00 0.00 3.85
974 1060 1.005984 TTTCGCACGAACGGGATGA 60.006 52.632 4.73 0.00 33.41 2.92
995 1081 0.108804 TCCGACGGAACTCATTCAGC 60.109 55.000 15.79 0.00 36.46 4.26
1001 1087 1.585006 GCTCTTCCGACGGAACTCA 59.415 57.895 25.18 11.06 36.71 3.41
1024 1110 2.870372 GCGTGCTTGGCAGGTTAG 59.130 61.111 12.56 0.00 44.79 2.34
1048 2084 0.400213 TTTGCCATCTCTCCGTTGGT 59.600 50.000 0.00 0.00 35.34 3.67
1156 2192 1.064060 GATTTTTCGGATGGTGGCGAG 59.936 52.381 0.00 0.00 0.00 5.03
1401 2739 1.197430 ACAGGGAGAAGAGGCTGTGG 61.197 60.000 0.00 0.00 0.00 4.17
1630 4835 2.026590 ACGAGAACGAAACGCCGT 59.973 55.556 0.00 0.00 45.64 5.68
1664 4886 2.060004 GATCGATCTCCACCGCGACA 62.060 60.000 18.29 0.00 35.44 4.35
1687 4909 1.690219 CCTCGCCAGCTCCACCTTAT 61.690 60.000 0.00 0.00 0.00 1.73
1688 4910 2.359169 CCTCGCCAGCTCCACCTTA 61.359 63.158 0.00 0.00 0.00 2.69
1812 5034 5.862924 ACTAAATGTGGTCTTGTTCATCG 57.137 39.130 0.00 0.00 0.00 3.84
1835 5060 9.281371 GTCCAGTTATCAAAAGTTAACTAACCT 57.719 33.333 8.92 0.00 36.71 3.50
1846 5071 7.921786 TCAAGGTATGTCCAGTTATCAAAAG 57.078 36.000 0.00 0.00 39.02 2.27
1950 5180 8.299570 AGACAGATTTGTGAAATTCATGGTAAC 58.700 33.333 0.00 0.00 37.76 2.50
1951 5181 8.298854 CAGACAGATTTGTGAAATTCATGGTAA 58.701 33.333 0.00 0.00 37.76 2.85
1952 5182 7.448161 ACAGACAGATTTGTGAAATTCATGGTA 59.552 33.333 0.00 0.00 37.76 3.25
1953 5183 6.266103 ACAGACAGATTTGTGAAATTCATGGT 59.734 34.615 0.00 0.00 37.76 3.55
1954 5184 6.684686 ACAGACAGATTTGTGAAATTCATGG 58.315 36.000 0.00 0.00 37.76 3.66
1955 5185 9.121517 GTTACAGACAGATTTGTGAAATTCATG 57.878 33.333 0.00 0.00 37.76 3.07
1956 5186 9.071276 AGTTACAGACAGATTTGTGAAATTCAT 57.929 29.630 0.00 0.00 37.76 2.57
1957 5187 8.344831 CAGTTACAGACAGATTTGTGAAATTCA 58.655 33.333 0.00 0.00 37.76 2.57
1958 5188 8.345565 ACAGTTACAGACAGATTTGTGAAATTC 58.654 33.333 0.00 0.00 37.76 2.17
1959 5189 8.225603 ACAGTTACAGACAGATTTGTGAAATT 57.774 30.769 0.00 0.00 37.76 1.82
1961 5191 7.624360 AACAGTTACAGACAGATTTGTGAAA 57.376 32.000 0.00 0.00 37.76 2.69
2022 5271 3.300032 AGGTAGAATCCTGGTGCGA 57.700 52.632 0.00 0.00 36.35 5.10
2048 5297 3.576982 TGTATAACGAAGGGGCAGGATAG 59.423 47.826 0.00 0.00 0.00 2.08
2051 5300 1.868713 TGTATAACGAAGGGGCAGGA 58.131 50.000 0.00 0.00 0.00 3.86
2052 5301 2.702592 TTGTATAACGAAGGGGCAGG 57.297 50.000 0.00 0.00 0.00 4.85
2053 5302 5.763204 ACAATATTGTATAACGAAGGGGCAG 59.237 40.000 19.51 0.00 40.16 4.85
2054 5303 5.686753 ACAATATTGTATAACGAAGGGGCA 58.313 37.500 19.51 0.00 40.16 5.36
2055 5304 6.261381 TGAACAATATTGTATAACGAAGGGGC 59.739 38.462 21.07 0.23 41.31 5.80
2056 5305 7.255001 GGTGAACAATATTGTATAACGAAGGGG 60.255 40.741 21.07 0.00 41.31 4.79
2057 5306 7.281324 TGGTGAACAATATTGTATAACGAAGGG 59.719 37.037 21.07 0.00 41.31 3.95
2058 5307 8.203937 TGGTGAACAATATTGTATAACGAAGG 57.796 34.615 21.07 0.00 41.31 3.46
2061 5310 9.819267 TGTATGGTGAACAATATTGTATAACGA 57.181 29.630 21.07 15.72 41.31 3.85
2067 5316 9.945904 TTGTACTGTATGGTGAACAATATTGTA 57.054 29.630 21.07 6.01 41.31 2.41
2114 6436 5.985175 TGGGTTGATAGGATAATGGTGAA 57.015 39.130 0.00 0.00 0.00 3.18
2116 6438 7.601705 AAAATGGGTTGATAGGATAATGGTG 57.398 36.000 0.00 0.00 0.00 4.17
2117 6439 8.511126 ACTAAAATGGGTTGATAGGATAATGGT 58.489 33.333 0.00 0.00 0.00 3.55
2128 6450 4.321675 GGCGTTCAACTAAAATGGGTTGAT 60.322 41.667 8.91 0.00 46.98 2.57
2142 6464 0.110192 GCTTGCTACAGGCGTTCAAC 60.110 55.000 0.00 0.00 45.43 3.18
2181 6505 7.267128 AGAAAGCAATTGACAAGTTGAATTCA 58.733 30.769 10.34 3.38 30.50 2.57
2187 6511 6.532657 ACTTGAAGAAAGCAATTGACAAGTTG 59.467 34.615 10.34 0.00 42.12 3.16
2260 6584 6.260936 GGTGTAGTTATCCCTCATGATGTTTG 59.739 42.308 0.00 0.00 0.00 2.93
2282 6606 5.089970 TCACTAGTTCATCTTGGATGGTG 57.910 43.478 0.00 7.34 0.00 4.17
2483 6809 2.489329 ACAATTTGGAAGATGGTGAGCG 59.511 45.455 0.78 0.00 0.00 5.03
2493 6822 6.149474 CACCTAGTGTAAGGACAATTTGGAAG 59.851 42.308 0.78 0.00 39.15 3.46
2532 6867 5.722021 AAACTGTTTCAAACCTGTCTGTT 57.278 34.783 0.00 0.00 0.00 3.16
2582 6917 0.657312 CAACGACTGCAAAGCACTCA 59.343 50.000 0.00 0.00 33.79 3.41
2630 6965 2.231964 GGAATGTGCAAGCTTCCATGAA 59.768 45.455 14.99 0.00 38.64 2.57
2770 7110 4.455606 GATGAGGGGTATGTTTCTTCAGG 58.544 47.826 0.00 0.00 0.00 3.86
3022 7368 5.578727 CCAAAAGGAGAGAAGAACAGTATCG 59.421 44.000 0.00 0.00 0.00 2.92
3118 7468 5.672503 TGTACGTAGCTCTCTTCACTCTAT 58.327 41.667 0.00 0.00 0.00 1.98
3222 7667 1.000955 GAAGAACTTCGCCTCACTGGA 59.999 52.381 0.00 0.00 38.35 3.86
3410 7855 2.586648 ACCCAATTCGAGAAAGCCTT 57.413 45.000 0.00 0.00 0.00 4.35
3440 7885 5.586155 TGGGGGTTAAACAATTAGAGTCA 57.414 39.130 0.00 0.00 0.00 3.41
3497 7942 2.570752 CCCATATCTGACTCCAGGGATG 59.429 54.545 0.00 0.00 40.76 3.51
3512 7957 8.717717 TGAGATTTCAGTAGACATTTCCCATAT 58.282 33.333 0.00 0.00 0.00 1.78
3539 7984 2.869192 GCCGATTCAATGAGAGGACTTC 59.131 50.000 5.20 0.00 0.00 3.01
3643 8088 1.073125 CCATGCGTCCCCATATGGTAA 59.927 52.381 20.46 5.13 36.25 2.85
3692 8137 9.340223 CCTACTCCTATCCCTTTATTCCTATTT 57.660 37.037 0.00 0.00 0.00 1.40
3693 8138 8.698476 TCCTACTCCTATCCCTTTATTCCTATT 58.302 37.037 0.00 0.00 0.00 1.73
3694 8139 8.258641 TCCTACTCCTATCCCTTTATTCCTAT 57.741 38.462 0.00 0.00 0.00 2.57
3695 8140 7.674327 TCCTACTCCTATCCCTTTATTCCTA 57.326 40.000 0.00 0.00 0.00 2.94
3696 8141 6.562845 TCCTACTCCTATCCCTTTATTCCT 57.437 41.667 0.00 0.00 0.00 3.36
3755 8206 1.656587 TAGATGTTCCCACTGGTGCT 58.343 50.000 0.00 0.00 0.00 4.40
3761 8212 7.623999 ATTCATCAGTATAGATGTTCCCACT 57.376 36.000 0.00 0.00 44.46 4.00
3781 8232 5.938710 TGTATTACAGGCCACGTTTAATTCA 59.061 36.000 5.01 1.18 0.00 2.57
3850 8301 1.281867 CAGTATGGGTTCCTTGGCTGA 59.718 52.381 0.00 0.00 0.00 4.26
3868 8319 3.149196 ACAGGAAACAACATGCTACCAG 58.851 45.455 0.00 0.00 0.00 4.00
3888 8339 2.664971 CGCCTAGACAATACGATCCGAC 60.665 54.545 0.00 0.00 0.00 4.79
3896 8347 2.295253 ACACTGCGCCTAGACAATAC 57.705 50.000 4.18 0.00 0.00 1.89
3927 8378 3.990318 TGCGACGAGACAATATGATCT 57.010 42.857 0.00 0.00 0.00 2.75
3932 8383 3.845178 TCAGTTTGCGACGAGACAATAT 58.155 40.909 0.00 0.00 0.00 1.28
3964 8417 2.238395 GGAGAAGGCTCAACAAGAGGAT 59.762 50.000 0.00 0.00 44.86 3.24
4104 8557 8.825667 TGCTGTTTACTTTGAACTTTCTTTTT 57.174 26.923 0.00 0.00 0.00 1.94
4107 8560 8.872845 CAATTGCTGTTTACTTTGAACTTTCTT 58.127 29.630 0.00 0.00 0.00 2.52
4140 8593 4.039092 GCTGCCCTGGCCAGAAGA 62.039 66.667 34.91 15.26 41.09 2.87
4160 8613 4.089361 TCAGCTGTCTACTTCCATCTTCA 58.911 43.478 14.67 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.