Multiple sequence alignment - TraesCS7B01G054900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G054900 chr7B 100.000 7310 0 0 1 7310 58255590 58248281 0.000000e+00 13500.0
1 TraesCS7B01G054900 chr7B 82.314 605 67 21 6025 6609 57870977 57870393 8.520000e-134 488.0
2 TraesCS7B01G054900 chr7B 84.729 406 47 11 5480 5877 57880763 57880365 6.880000e-105 392.0
3 TraesCS7B01G054900 chr7B 83.186 452 50 20 306 743 58432842 58432403 2.470000e-104 390.0
4 TraesCS7B01G054900 chr7B 90.647 278 19 2 63 334 58431247 58430971 5.390000e-96 363.0
5 TraesCS7B01G054900 chr7B 86.517 89 5 6 6762 6848 57703045 57702962 2.810000e-14 91.6
6 TraesCS7B01G054900 chr7B 97.297 37 1 0 2607 2643 519904375 519904411 6.120000e-06 63.9
7 TraesCS7B01G054900 chr7D 90.245 3639 212 75 1698 5259 101400188 101396616 0.000000e+00 4621.0
8 TraesCS7B01G054900 chr7D 88.462 1066 58 35 743 1766 101401211 101400169 0.000000e+00 1227.0
9 TraesCS7B01G054900 chr7D 89.643 589 44 10 6026 6605 101395883 101395303 0.000000e+00 734.0
10 TraesCS7B01G054900 chr7D 96.145 415 12 2 6896 7310 101394918 101394508 0.000000e+00 675.0
11 TraesCS7B01G054900 chr7D 84.843 607 49 10 61 660 101413631 101413061 8.230000e-159 571.0
12 TraesCS7B01G054900 chr7D 86.947 452 44 12 306 743 101423786 101423336 1.830000e-135 494.0
13 TraesCS7B01G054900 chr7D 89.922 387 30 7 61 438 101412029 101411643 2.370000e-134 490.0
14 TraesCS7B01G054900 chr7D 83.333 558 49 20 5266 5797 101396575 101396036 6.640000e-130 475.0
15 TraesCS7B01G054900 chr7D 84.343 396 49 7 6203 6591 101284670 101284281 6.920000e-100 375.0
16 TraesCS7B01G054900 chr7D 88.636 176 14 4 6600 6769 101395206 101395031 7.430000e-50 209.0
17 TraesCS7B01G054900 chr7D 97.826 46 1 0 6824 6869 101395031 101394986 6.080000e-11 80.5
18 TraesCS7B01G054900 chr7A 93.295 1044 43 8 2640 3658 104813185 104812144 0.000000e+00 1515.0
19 TraesCS7B01G054900 chr7A 87.017 1086 72 28 3654 4696 104806999 104805940 0.000000e+00 1160.0
20 TraesCS7B01G054900 chr7A 84.391 1198 125 38 4868 6022 104805749 104804571 0.000000e+00 1120.0
21 TraesCS7B01G054900 chr7A 85.267 862 85 13 5069 5895 104733376 104732522 0.000000e+00 850.0
22 TraesCS7B01G054900 chr7A 92.675 587 36 4 6026 6609 104804625 104804043 0.000000e+00 839.0
23 TraesCS7B01G054900 chr7A 89.602 654 33 16 743 1362 104815171 104814519 0.000000e+00 798.0
24 TraesCS7B01G054900 chr7A 89.292 607 29 18 6730 7310 104552496 104551900 0.000000e+00 728.0
25 TraesCS7B01G054900 chr7A 88.225 586 62 5 6025 6605 104243441 104242858 0.000000e+00 693.0
26 TraesCS7B01G054900 chr7A 87.884 586 64 5 6025 6605 104278345 104277762 0.000000e+00 682.0
27 TraesCS7B01G054900 chr7A 93.213 442 21 3 6869 7310 104803601 104803169 6.180000e-180 641.0
28 TraesCS7B01G054900 chr7A 87.146 459 51 8 306 758 105133663 105133207 1.410000e-141 514.0
29 TraesCS7B01G054900 chr7A 88.608 395 35 5 2210 2595 104813648 104813255 8.580000e-129 472.0
30 TraesCS7B01G054900 chr7A 84.000 450 40 21 6606 7028 104242776 104242332 3.180000e-108 403.0
31 TraesCS7B01G054900 chr7A 84.000 450 40 21 6606 7028 104277679 104277235 3.180000e-108 403.0
32 TraesCS7B01G054900 chr7A 91.096 292 20 6 7024 7310 104277097 104276807 2.470000e-104 390.0
33 TraesCS7B01G054900 chr7A 90.345 290 24 4 7024 7310 104242194 104241906 1.930000e-100 377.0
34 TraesCS7B01G054900 chr7A 91.544 272 16 4 6606 6872 104803913 104803644 1.160000e-97 368.0
35 TraesCS7B01G054900 chr7A 81.156 398 52 10 5480 5871 103954689 103954309 1.540000e-76 298.0
36 TraesCS7B01G054900 chr7A 83.168 303 34 9 6026 6312 104729782 104729481 2.020000e-65 261.0
37 TraesCS7B01G054900 chr7A 88.660 97 9 2 6777 6872 104727311 104727216 4.630000e-22 117.0
38 TraesCS7B01G054900 chr4D 91.329 173 12 2 2764 2933 50067948 50067776 4.410000e-57 233.0
39 TraesCS7B01G054900 chr2B 86.190 210 22 3 107 310 762209078 762209286 3.430000e-53 220.0
40 TraesCS7B01G054900 chr2B 86.364 198 17 4 121 310 324649930 324649735 2.670000e-49 207.0
41 TraesCS7B01G054900 chr2A 86.634 202 18 6 112 305 302055256 302055456 1.600000e-51 215.0
42 TraesCS7B01G054900 chr1D 88.554 166 15 2 148 310 217309362 217309198 1.610000e-46 198.0
43 TraesCS7B01G054900 chr5D 92.647 136 9 1 175 310 58121762 58121628 2.080000e-45 195.0
44 TraesCS7B01G054900 chr5D 83.065 124 19 2 1150 1272 357159656 357159534 2.160000e-20 111.0
45 TraesCS7B01G054900 chr5D 83.065 124 19 2 1150 1272 357371707 357371585 2.160000e-20 111.0
46 TraesCS7B01G054900 chr5D 95.000 40 2 0 2607 2646 136584047 136584086 6.120000e-06 63.9
47 TraesCS7B01G054900 chr6D 87.059 170 14 6 148 310 422931296 422931464 1.250000e-42 185.0
48 TraesCS7B01G054900 chr6D 83.000 200 27 6 109 304 6959278 6959474 2.710000e-39 174.0
49 TraesCS7B01G054900 chr6D 81.532 222 20 7 109 310 93632384 93632164 5.870000e-36 163.0
50 TraesCS7B01G054900 chr6D 80.214 187 31 5 1091 1275 305270888 305271070 1.280000e-27 135.0
51 TraesCS7B01G054900 chr6D 95.000 40 2 0 2607 2646 456822700 456822739 6.120000e-06 63.9
52 TraesCS7B01G054900 chr6B 80.000 220 23 5 111 310 691001428 691001646 7.640000e-30 143.0
53 TraesCS7B01G054900 chr6B 80.435 184 30 5 1094 1275 471313823 471313644 1.280000e-27 135.0
54 TraesCS7B01G054900 chr6B 97.368 38 1 0 2606 2643 618132623 618132660 1.700000e-06 65.8
55 TraesCS7B01G054900 chr6A 79.891 184 31 5 1094 1275 409135923 409135744 5.950000e-26 130.0
56 TraesCS7B01G054900 chr3B 87.500 112 10 3 2732 2841 54594963 54594854 7.700000e-25 126.0
57 TraesCS7B01G054900 chr3B 97.561 41 1 0 2608 2648 621152206 621152246 3.660000e-08 71.3
58 TraesCS7B01G054900 chr5B 84.677 124 17 2 1150 1272 421998400 421998278 9.960000e-24 122.0
59 TraesCS7B01G054900 chr5A 84.553 123 19 0 1150 1272 458525061 458524939 9.960000e-24 122.0
60 TraesCS7B01G054900 chr4A 93.750 48 3 0 2450 2497 659943345 659943392 1.020000e-08 73.1
61 TraesCS7B01G054900 chr4A 95.349 43 1 1 2608 2650 32052731 32052772 4.730000e-07 67.6
62 TraesCS7B01G054900 chr3D 95.000 40 2 0 2607 2646 555633637 555633676 6.120000e-06 63.9
63 TraesCS7B01G054900 chr3D 94.737 38 1 1 2618 2654 28505508 28505471 2.850000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G054900 chr7B 58248281 58255590 7309 True 13500.000000 13500 100.000000 1 7310 1 chr7B.!!$R4 7309
1 TraesCS7B01G054900 chr7B 57870393 57870977 584 True 488.000000 488 82.314000 6025 6609 1 chr7B.!!$R2 584
2 TraesCS7B01G054900 chr7B 58430971 58432842 1871 True 376.500000 390 86.916500 63 743 2 chr7B.!!$R5 680
3 TraesCS7B01G054900 chr7D 101394508 101401211 6703 True 1145.928571 4621 90.612857 743 7310 7 chr7D.!!$R3 6567
4 TraesCS7B01G054900 chr7D 101411643 101413631 1988 True 530.500000 571 87.382500 61 660 2 chr7D.!!$R4 599
5 TraesCS7B01G054900 chr7A 104812144 104815171 3027 True 928.333333 1515 90.501667 743 3658 3 chr7A.!!$R8 2915
6 TraesCS7B01G054900 chr7A 104803169 104806999 3830 True 825.600000 1160 89.768000 3654 7310 5 chr7A.!!$R7 3656
7 TraesCS7B01G054900 chr7A 104551900 104552496 596 True 728.000000 728 89.292000 6730 7310 1 chr7A.!!$R2 580
8 TraesCS7B01G054900 chr7A 104276807 104278345 1538 True 491.666667 682 87.660000 6025 7310 3 chr7A.!!$R5 1285
9 TraesCS7B01G054900 chr7A 104241906 104243441 1535 True 491.000000 693 87.523333 6025 7310 3 chr7A.!!$R4 1285
10 TraesCS7B01G054900 chr7A 104727216 104733376 6160 True 409.333333 850 85.698333 5069 6872 3 chr7A.!!$R6 1803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 1024 0.039165 TGCACAGCTACACTCACTCG 60.039 55.0 0.00 0.00 0.00 4.18 F
975 1026 0.734253 CACAGCTACACTCACTCGGC 60.734 60.0 0.00 0.00 0.00 5.54 F
1893 2407 0.899717 TTCATTTGTCAGGGCCTGGC 60.900 55.0 30.98 30.98 36.52 4.85 F
3446 4057 0.467844 TTTCTGCTGCTGGGCTTTGA 60.468 50.0 6.69 0.00 0.00 2.69 F
4311 5164 0.810648 ACCATGTGCCGCACTTATTG 59.189 50.0 23.52 14.82 35.11 1.90 F
5648 6656 0.032815 GATGGCGAGGTAGAGGCTTC 59.967 60.0 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 2382 1.269517 GCCCTGACAAATGAAACGCAA 60.270 47.619 0.00 0.0 0.00 4.85 R
2469 3052 4.060205 GCAATGATTTGTGCCAAGAAAGT 58.940 39.130 0.00 0.0 35.17 2.66 R
3474 4085 0.682292 TGTGTCGTAGGTCATTGCCA 59.318 50.000 0.97 0.0 0.00 4.92 R
4541 5406 0.035317 ACGTGAAGCTGCTCAATGGA 59.965 50.000 1.00 0.0 0.00 3.41 R
5852 6865 1.216064 AGCATGCCTGGAACATCCTA 58.784 50.000 15.66 0.0 38.20 2.94 R
7002 12567 1.937108 GCTTGACCAGAGTTGAGACCG 60.937 57.143 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.559785 CTCTTCAAATGTGGCCGCT 58.440 52.632 18.96 0.00 0.00 5.52
19 20 0.169672 CTCTTCAAATGTGGCCGCTG 59.830 55.000 18.96 7.83 0.00 5.18
20 21 0.250684 TCTTCAAATGTGGCCGCTGA 60.251 50.000 18.96 10.35 0.00 4.26
21 22 0.109597 CTTCAAATGTGGCCGCTGAC 60.110 55.000 18.96 0.00 0.00 3.51
22 23 1.523154 TTCAAATGTGGCCGCTGACC 61.523 55.000 18.96 0.00 0.00 4.02
23 24 3.055719 AAATGTGGCCGCTGACCG 61.056 61.111 18.96 0.00 0.00 4.79
32 33 2.579201 CGCTGACCGGATTCTGGT 59.421 61.111 17.28 17.28 44.10 4.00
33 34 1.079127 CGCTGACCGGATTCTGGTT 60.079 57.895 18.25 2.68 40.63 3.67
34 35 1.084370 CGCTGACCGGATTCTGGTTC 61.084 60.000 18.25 11.72 40.63 3.62
35 36 1.084370 GCTGACCGGATTCTGGTTCG 61.084 60.000 18.25 12.84 40.63 3.95
36 37 0.530744 CTGACCGGATTCTGGTTCGA 59.469 55.000 18.25 5.41 40.63 3.71
37 38 0.970640 TGACCGGATTCTGGTTCGAA 59.029 50.000 18.25 0.00 40.63 3.71
38 39 1.345089 TGACCGGATTCTGGTTCGAAA 59.655 47.619 18.25 0.56 40.63 3.46
39 40 2.000447 GACCGGATTCTGGTTCGAAAG 59.000 52.381 18.25 0.00 40.63 2.62
40 41 1.346722 ACCGGATTCTGGTTCGAAAGT 59.653 47.619 9.46 0.00 35.82 2.66
41 42 2.224450 ACCGGATTCTGGTTCGAAAGTT 60.224 45.455 9.46 0.00 35.82 2.66
42 43 3.007182 ACCGGATTCTGGTTCGAAAGTTA 59.993 43.478 9.46 0.00 35.82 2.24
43 44 3.617263 CCGGATTCTGGTTCGAAAGTTAG 59.383 47.826 0.00 0.00 0.00 2.34
44 45 4.491676 CGGATTCTGGTTCGAAAGTTAGA 58.508 43.478 0.00 0.00 0.00 2.10
45 46 5.109903 CGGATTCTGGTTCGAAAGTTAGAT 58.890 41.667 0.00 0.00 0.00 1.98
46 47 6.270815 CGGATTCTGGTTCGAAAGTTAGATA 58.729 40.000 0.00 0.00 0.00 1.98
47 48 6.418226 CGGATTCTGGTTCGAAAGTTAGATAG 59.582 42.308 0.00 0.00 0.00 2.08
48 49 6.702282 GGATTCTGGTTCGAAAGTTAGATAGG 59.298 42.308 0.00 0.00 0.00 2.57
49 50 6.845758 TTCTGGTTCGAAAGTTAGATAGGA 57.154 37.500 0.00 0.00 0.00 2.94
50 51 7.419711 TTCTGGTTCGAAAGTTAGATAGGAT 57.580 36.000 0.00 0.00 0.00 3.24
51 52 7.040473 TCTGGTTCGAAAGTTAGATAGGATC 57.960 40.000 0.00 0.00 0.00 3.36
52 53 6.605995 TCTGGTTCGAAAGTTAGATAGGATCA 59.394 38.462 0.00 0.00 0.00 2.92
53 54 6.570692 TGGTTCGAAAGTTAGATAGGATCAC 58.429 40.000 0.00 0.00 0.00 3.06
54 55 5.984323 GGTTCGAAAGTTAGATAGGATCACC 59.016 44.000 0.00 0.00 0.00 4.02
108 109 4.142138 GGTAGCCCATGGAAGATAGATACG 60.142 50.000 15.22 0.00 0.00 3.06
109 110 2.834549 AGCCCATGGAAGATAGATACGG 59.165 50.000 15.22 0.00 0.00 4.02
134 135 3.658709 TCGTTGTAGCACATTGATGTCA 58.341 40.909 0.00 0.00 39.39 3.58
164 165 1.137479 CCGAGCATGCCAAATCCAAAT 59.863 47.619 15.66 0.00 0.00 2.32
193 200 4.397103 GTGATGCTTCAAGAATGATGGTGA 59.603 41.667 3.51 0.00 34.96 4.02
194 201 4.397103 TGATGCTTCAAGAATGATGGTGAC 59.603 41.667 0.00 0.00 34.96 3.67
234 241 5.022787 TGATATTGCCCTTGTAAAGCCTTT 58.977 37.500 0.00 0.00 44.44 3.11
236 243 2.373335 TGCCCTTGTAAAGCCTTTGA 57.627 45.000 0.00 0.00 44.44 2.69
238 245 3.238597 TGCCCTTGTAAAGCCTTTGAAT 58.761 40.909 0.00 0.00 44.44 2.57
253 260 9.836864 AAGCCTTTGAATAGTTCTTTTCATTTT 57.163 25.926 6.55 0.00 32.27 1.82
287 294 4.518211 AGTCAAGAGATTCAAGCAAACCTG 59.482 41.667 0.00 0.00 0.00 4.00
296 303 2.991540 GCAAACCTGGCCACCCTC 60.992 66.667 0.00 0.00 0.00 4.30
308 315 1.492133 CCACCCTCTTGCTTCTGGGA 61.492 60.000 11.33 0.00 42.11 4.37
309 316 0.622665 CACCCTCTTGCTTCTGGGAT 59.377 55.000 11.33 0.00 42.11 3.85
353 360 0.679002 GAGCAGATCCAGGCAAGCAA 60.679 55.000 4.68 0.00 0.00 3.91
424 431 3.003763 GGTCCTCCCCGTTGAGCT 61.004 66.667 0.00 0.00 0.00 4.09
474 482 0.329596 ACCACTCATCCTTGCTTCCC 59.670 55.000 0.00 0.00 0.00 3.97
493 501 4.069232 CCTTCCGAGCGCCTGTGA 62.069 66.667 2.29 0.00 0.00 3.58
502 510 4.812476 CGCCTGTGATCGCCGGAA 62.812 66.667 19.72 0.00 0.00 4.30
539 547 4.947147 CGGTGGTGGTGGTGGTGG 62.947 72.222 0.00 0.00 0.00 4.61
540 548 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
554 573 4.514585 TGGTGGTGGTGGTGGTGC 62.515 66.667 0.00 0.00 0.00 5.01
607 626 0.114364 TACAGGAGGAGTGGAGTGCA 59.886 55.000 0.00 0.00 0.00 4.57
669 691 2.258591 CGTCCCTCACCGTCACTG 59.741 66.667 0.00 0.00 0.00 3.66
670 692 2.561956 CGTCCCTCACCGTCACTGT 61.562 63.158 0.00 0.00 0.00 3.55
673 695 0.469331 TCCCTCACCGTCACTGTTCT 60.469 55.000 0.00 0.00 0.00 3.01
674 696 0.319900 CCCTCACCGTCACTGTTCTG 60.320 60.000 0.00 0.00 0.00 3.02
676 698 0.319900 CTCACCGTCACTGTTCTGGG 60.320 60.000 0.00 0.00 0.00 4.45
678 700 0.179056 CACCGTCACTGTTCTGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
679 701 0.179056 ACCGTCACTGTTCTGGGTTG 60.179 55.000 0.00 0.00 0.00 3.77
680 702 0.884704 CCGTCACTGTTCTGGGTTGG 60.885 60.000 0.00 0.00 0.00 3.77
681 703 0.884704 CGTCACTGTTCTGGGTTGGG 60.885 60.000 0.00 0.00 0.00 4.12
703 731 2.510906 CCAGATAGTTGGGCCCGG 59.489 66.667 19.37 5.34 34.46 5.73
728 756 1.285078 GGTCCAGAAAGGCCCAACTAT 59.715 52.381 0.00 0.00 34.73 2.12
730 758 3.017442 GTCCAGAAAGGCCCAACTATTC 58.983 50.000 0.00 0.00 37.29 1.75
731 759 2.017049 CCAGAAAGGCCCAACTATTCG 58.983 52.381 0.00 0.00 0.00 3.34
765 793 3.118408 ACGGACCATGTACTTGCATATGT 60.118 43.478 4.29 0.00 0.00 2.29
768 796 5.611374 GGACCATGTACTTGCATATGTACT 58.389 41.667 19.02 5.90 37.95 2.73
772 800 7.338710 ACCATGTACTTGCATATGTACTTCTT 58.661 34.615 19.02 6.19 37.95 2.52
774 802 7.306807 CCATGTACTTGCATATGTACTTCTTCG 60.307 40.741 19.02 7.40 37.95 3.79
788 819 2.358939 TCTTCGCTTCTACCGGAAAC 57.641 50.000 9.46 0.00 33.07 2.78
893 940 1.903860 ACTCGCCACTATTAACCACCA 59.096 47.619 0.00 0.00 0.00 4.17
897 944 2.676342 CGCCACTATTAACCACCACTTC 59.324 50.000 0.00 0.00 0.00 3.01
898 945 3.618997 CGCCACTATTAACCACCACTTCT 60.619 47.826 0.00 0.00 0.00 2.85
973 1024 0.039165 TGCACAGCTACACTCACTCG 60.039 55.000 0.00 0.00 0.00 4.18
975 1026 0.734253 CACAGCTACACTCACTCGGC 60.734 60.000 0.00 0.00 0.00 5.54
1044 1110 1.153939 CGTTCTGCTCCTCGTCCTG 60.154 63.158 0.00 0.00 0.00 3.86
1275 1341 1.218316 CTGGCTCAACGGAGGTACC 59.782 63.158 2.73 2.73 41.67 3.34
1285 1351 3.468140 GAGGTACCACTCCCCGCC 61.468 72.222 15.94 0.00 0.00 6.13
1431 1652 2.491693 CGGGCCAAACATATGAAACTGT 59.508 45.455 10.38 0.00 0.00 3.55
1436 1657 4.923281 GCCAAACATATGAAACTGTTGTCC 59.077 41.667 10.38 0.00 35.82 4.02
1468 1801 5.865085 TCTTTTGCCTGTGATACAACTAGT 58.135 37.500 0.00 0.00 0.00 2.57
1525 1985 3.106672 GTGGTATCGCTTCAGAAGTACG 58.893 50.000 11.94 7.81 0.00 3.67
1587 2049 5.163195 GCCTATTCAGGTTCTTTATCTGGGA 60.163 44.000 0.00 0.00 44.68 4.37
1606 2068 1.905894 GAAAAATGCTTGGGGGCCTAA 59.094 47.619 0.84 0.00 0.00 2.69
1617 2079 3.403936 GGGCCTAAGCACATACTGG 57.596 57.895 0.84 0.00 44.19 4.00
1628 2090 7.493971 CCTAAGCACATACTGGAGCATATTATC 59.506 40.741 0.00 0.00 0.00 1.75
1629 2091 6.617782 AGCACATACTGGAGCATATTATCT 57.382 37.500 0.00 0.00 0.00 1.98
1680 2145 6.738114 TGTCCATTGAAAGAAATGTCAACTC 58.262 36.000 0.00 0.00 36.62 3.01
1749 2262 8.373220 AGTTAACTTATTATAGTGCCGCCTTAT 58.627 33.333 1.12 0.00 0.00 1.73
1752 2265 5.012768 ACTTATTATAGTGCCGCCTTATGGT 59.987 40.000 0.00 0.00 35.27 3.55
1772 2285 4.212425 TGGTGTTAGCTAATTGTTCACGTG 59.788 41.667 9.94 9.94 0.00 4.49
1865 2379 4.423625 ACTTGAGAGTATAATGGTGGCC 57.576 45.455 0.00 0.00 33.32 5.36
1868 2382 5.044846 ACTTGAGAGTATAATGGTGGCCTTT 60.045 40.000 3.32 0.00 33.32 3.11
1893 2407 0.899717 TTCATTTGTCAGGGCCTGGC 60.900 55.000 30.98 30.98 36.52 4.85
1989 2503 7.446625 GTGCATATGAATCCTTACTCTTGGAAT 59.553 37.037 6.97 0.00 35.81 3.01
2016 2532 6.237901 AGGTAGCATTCACACAGAAACATTA 58.762 36.000 0.00 0.00 40.22 1.90
2098 2615 7.865706 TCTTATTCCAACCTTCTATTTCTGC 57.134 36.000 0.00 0.00 0.00 4.26
2106 2623 4.985538 ACCTTCTATTTCTGCTTTCCACA 58.014 39.130 0.00 0.00 0.00 4.17
2177 2726 8.040716 AGAGACCCTTAACAAATATTTTGACG 57.959 34.615 6.96 0.00 0.00 4.35
2417 3000 2.917227 TGACGGCTGAGTCTGCCA 60.917 61.111 32.62 16.47 46.59 4.92
2439 3022 6.708054 GCCACATATTTTGCTAGAGTACTGAT 59.292 38.462 0.00 0.00 0.00 2.90
2444 3027 9.352784 CATATTTTGCTAGAGTACTGATAGCTC 57.647 37.037 25.79 9.05 41.95 4.09
2469 3052 4.274147 TGGTTGTTAAACTGGAAGCTCAA 58.726 39.130 0.00 0.00 37.60 3.02
2688 3296 4.066646 TGCTTGAACTGCTACTTACACA 57.933 40.909 0.00 0.00 0.00 3.72
2716 3324 4.638304 TGGAGTACAGCCTTAGTTTTCAC 58.362 43.478 0.00 0.00 0.00 3.18
2721 3329 5.992217 AGTACAGCCTTAGTTTTCACTCTTG 59.008 40.000 0.00 0.00 34.06 3.02
2732 3340 5.639082 AGTTTTCACTCTTGCAACCTTTTTG 59.361 36.000 0.00 0.00 0.00 2.44
2950 3558 1.066303 GATGAGAGGACTGGTACTGCG 59.934 57.143 0.00 0.00 0.00 5.18
2952 3560 1.341089 TGAGAGGACTGGTACTGCGAT 60.341 52.381 0.00 0.00 0.00 4.58
2999 3609 5.888161 GGTTTACATGAAATCCACATCCTCT 59.112 40.000 0.00 0.00 0.00 3.69
3157 3767 4.402793 GGAGAGAGTTATGCTGGTCTGTAA 59.597 45.833 0.00 0.00 0.00 2.41
3221 3831 7.489160 TGCTTCTTTCTTTCCTTTTCCTTTAC 58.511 34.615 0.00 0.00 0.00 2.01
3355 3965 7.294720 TCAATCTCAAGGGTTATATGGTATGGT 59.705 37.037 0.00 0.00 0.00 3.55
3442 4053 2.441001 ACTATATTTCTGCTGCTGGGCT 59.559 45.455 6.69 0.00 0.00 5.19
3446 4057 0.467844 TTTCTGCTGCTGGGCTTTGA 60.468 50.000 6.69 0.00 0.00 2.69
3471 4082 1.238439 AATGCCTTCGGTGTTCTGTG 58.762 50.000 0.00 0.00 0.00 3.66
3474 4085 0.818040 GCCTTCGGTGTTCTGTGGTT 60.818 55.000 0.00 0.00 0.00 3.67
3554 4189 3.003480 CAACTACCTTGTAGCTTGCCTC 58.997 50.000 0.00 0.00 0.00 4.70
3846 4481 2.417933 GCATTCATCTCCACAGTGTGAC 59.582 50.000 24.99 0.00 35.23 3.67
3915 4739 2.704572 AGCATCTTCACACCTACTTGC 58.295 47.619 0.00 0.00 0.00 4.01
3927 4751 4.702131 ACACCTACTTGCCATTCATCTTTC 59.298 41.667 0.00 0.00 0.00 2.62
3938 4762 3.417069 TTCATCTTTCGCCTCCTCAAA 57.583 42.857 0.00 0.00 0.00 2.69
3973 4797 1.971481 AAGGCTTCGGGTACGTTTTT 58.029 45.000 0.00 0.00 41.85 1.94
4071 4897 5.140454 GACCCATACAAATGCCTTCCTATT 58.860 41.667 0.00 0.00 0.00 1.73
4099 4925 3.384467 AGTTGCTAAGTTTTGTGCACCAT 59.616 39.130 15.69 0.00 35.01 3.55
4100 4926 4.582656 AGTTGCTAAGTTTTGTGCACCATA 59.417 37.500 15.69 0.00 35.01 2.74
4101 4927 5.068460 AGTTGCTAAGTTTTGTGCACCATAA 59.932 36.000 15.69 3.10 35.01 1.90
4102 4928 4.865776 TGCTAAGTTTTGTGCACCATAAC 58.134 39.130 15.69 14.91 35.84 1.89
4103 4929 4.582656 TGCTAAGTTTTGTGCACCATAACT 59.417 37.500 15.69 16.84 44.18 2.24
4108 4934 9.522804 CTAAGTTTTGTGCACCATAACTTTTTA 57.477 29.630 29.57 18.87 46.55 1.52
4174 5005 2.348411 ATGAACTAAGCGGGGAATGG 57.652 50.000 0.00 0.00 0.00 3.16
4216 5048 8.965819 TGTTCATATAAGTGCATACCATGTTTT 58.034 29.630 0.00 0.00 0.00 2.43
4306 5159 2.638480 ATTATACCATGTGCCGCACT 57.362 45.000 23.52 6.64 35.11 4.40
4307 5160 2.411628 TTATACCATGTGCCGCACTT 57.588 45.000 23.52 15.10 35.11 3.16
4308 5161 3.545366 TTATACCATGTGCCGCACTTA 57.455 42.857 23.52 5.51 35.11 2.24
4310 5163 2.411628 TACCATGTGCCGCACTTATT 57.588 45.000 23.52 10.29 35.11 1.40
4311 5164 0.810648 ACCATGTGCCGCACTTATTG 59.189 50.000 23.52 14.82 35.11 1.90
4312 5165 1.093972 CCATGTGCCGCACTTATTGA 58.906 50.000 23.52 3.22 35.11 2.57
4313 5166 1.472082 CCATGTGCCGCACTTATTGAA 59.528 47.619 23.52 2.47 35.11 2.69
4314 5167 2.094803 CCATGTGCCGCACTTATTGAAA 60.095 45.455 23.52 1.71 35.11 2.69
4315 5168 3.573598 CATGTGCCGCACTTATTGAAAA 58.426 40.909 23.52 0.96 35.11 2.29
4356 5221 7.654116 TGAATTCACACGTTTTCTGTACATCTA 59.346 33.333 3.38 0.00 0.00 1.98
4364 5229 9.901724 CACGTTTTCTGTACATCTAATTCATAC 57.098 33.333 0.00 0.00 0.00 2.39
4365 5230 9.095065 ACGTTTTCTGTACATCTAATTCATACC 57.905 33.333 0.00 0.00 0.00 2.73
4396 5261 8.006298 TGTGTTTTGATAGTCTGTTGGAAAAT 57.994 30.769 0.00 0.00 0.00 1.82
4541 5406 8.408601 CAGGTAATGTATTGAGCAGCTTTTTAT 58.591 33.333 0.00 0.00 0.00 1.40
4543 5408 7.862873 GGTAATGTATTGAGCAGCTTTTTATCC 59.137 37.037 0.00 0.00 0.00 2.59
4549 5414 5.571784 TGAGCAGCTTTTTATCCATTGAG 57.428 39.130 0.00 0.00 0.00 3.02
4550 5415 4.142315 TGAGCAGCTTTTTATCCATTGAGC 60.142 41.667 0.00 0.00 0.00 4.26
4551 5416 3.765511 AGCAGCTTTTTATCCATTGAGCA 59.234 39.130 0.00 0.00 32.78 4.26
4553 5418 4.110482 CAGCTTTTTATCCATTGAGCAGC 58.890 43.478 0.00 0.00 32.78 5.25
4556 5421 4.802563 GCTTTTTATCCATTGAGCAGCTTC 59.197 41.667 0.00 0.00 0.00 3.86
4580 5458 4.545610 CGTAAGTTTGTCCATTGCATTGT 58.454 39.130 7.75 0.00 0.00 2.71
4589 5467 9.149225 GTTTGTCCATTGCATTGTTATCATAAA 57.851 29.630 7.75 0.00 0.00 1.40
4667 5548 6.507958 TGATTTCATTTCACGCTCCATAAA 57.492 33.333 0.00 0.00 0.00 1.40
4680 5563 4.585879 GCTCCATAAAGTAGGGTTGTTCA 58.414 43.478 0.00 0.00 0.00 3.18
4681 5564 5.007682 GCTCCATAAAGTAGGGTTGTTCAA 58.992 41.667 0.00 0.00 0.00 2.69
4688 5571 9.927668 CATAAAGTAGGGTTGTTCAATGAATTT 57.072 29.630 0.00 0.00 0.00 1.82
4696 5579 8.096414 AGGGTTGTTCAATGAATTTTTATCCTG 58.904 33.333 0.00 0.00 0.00 3.86
4697 5580 7.148423 GGGTTGTTCAATGAATTTTTATCCTGC 60.148 37.037 0.00 0.00 0.00 4.85
4699 5582 8.938906 GTTGTTCAATGAATTTTTATCCTGCAT 58.061 29.630 0.00 0.00 0.00 3.96
4793 5677 2.483014 TGCAGTATTAAGGGCGTGTT 57.517 45.000 0.00 0.00 0.00 3.32
4806 5690 1.798813 GGCGTGTTTAGTGGTTGAGAG 59.201 52.381 0.00 0.00 0.00 3.20
4807 5691 2.547218 GGCGTGTTTAGTGGTTGAGAGA 60.547 50.000 0.00 0.00 0.00 3.10
4827 5712 5.555966 GAGACAACATTCTCTTTTCCTCCT 58.444 41.667 0.00 0.00 39.26 3.69
4831 5716 3.931578 ACATTCTCTTTTCCTCCTGTCG 58.068 45.455 0.00 0.00 0.00 4.35
4842 5727 2.506231 TCCTCCTGTCGTCTAGAGATGT 59.494 50.000 0.00 0.00 33.00 3.06
4847 5732 4.950475 TCCTGTCGTCTAGAGATGTCAATT 59.050 41.667 0.00 0.00 30.96 2.32
4983 5918 8.039538 AGGTTATTCTTAGTAACTGTAACTGGC 58.960 37.037 0.00 0.00 33.60 4.85
5005 5941 0.315886 ACGTGAACGCCAGTGACATA 59.684 50.000 2.11 0.00 44.43 2.29
5010 5946 4.318050 CGTGAACGCCAGTGACATATAATG 60.318 45.833 0.00 0.00 0.00 1.90
5012 5948 3.475566 ACGCCAGTGACATATAATGCT 57.524 42.857 0.00 0.00 0.00 3.79
5038 5974 3.347216 AGCAGATCCGCTAACATGTTTT 58.653 40.909 17.78 0.00 41.55 2.43
5085 6021 9.601217 AACATGTTGGTACTACTGATATTCTTC 57.399 33.333 11.07 0.00 0.00 2.87
5144 6080 8.138074 TGTGAAAGATCTGTACTGCATATCTAC 58.862 37.037 0.00 0.00 39.27 2.59
5219 6155 4.902448 ACTCTCTGAAGTCTTTACCCACTT 59.098 41.667 0.00 0.00 35.48 3.16
5253 6189 9.988815 CAAAGATGGCTCTATACTAAACTATGT 57.011 33.333 0.00 0.00 0.00 2.29
5297 6267 9.841880 GGATTCAGTTAGTTTATTCCTCAAAAC 57.158 33.333 0.00 0.00 36.13 2.43
5300 6270 8.974060 TCAGTTAGTTTATTCCTCAAAACTGT 57.026 30.769 9.98 0.00 43.77 3.55
5317 6287 8.687242 TCAAAACTGTTAAACATATTGTCACCA 58.313 29.630 0.00 0.00 0.00 4.17
5318 6288 8.751335 CAAAACTGTTAAACATATTGTCACCAC 58.249 33.333 0.00 0.00 0.00 4.16
5351 6321 6.882140 TGGGTTTATAAGATGGTTGTGTACAG 59.118 38.462 0.00 0.00 0.00 2.74
5371 6341 5.918608 ACAGCCTAGTTCGATGTCAATTAT 58.081 37.500 0.00 0.00 0.00 1.28
5397 6367 7.936496 TTTTATCATGCTCTCACCACATTTA 57.064 32.000 0.00 0.00 0.00 1.40
5403 6387 3.191162 TGCTCTCACCACATTTAACATGC 59.809 43.478 0.00 0.00 0.00 4.06
5465 6458 4.580580 ACTTTTCCCACTCTGTGCTTTAAG 59.419 41.667 0.00 0.00 31.34 1.85
5550 6558 2.093816 TGGAGACACAGATGCAGTGATC 60.094 50.000 11.19 8.27 40.16 2.92
5641 6649 3.606595 ATGATGATGATGGCGAGGTAG 57.393 47.619 0.00 0.00 0.00 3.18
5648 6656 0.032815 GATGGCGAGGTAGAGGCTTC 59.967 60.000 0.00 0.00 0.00 3.86
5659 6667 4.161377 AGGTAGAGGCTTCTTCTTGATCAC 59.839 45.833 2.68 0.00 34.79 3.06
5739 6750 5.945191 TGCATAATTTGTTCATCCTCAGACA 59.055 36.000 0.00 0.00 0.00 3.41
5748 6759 9.513906 TTTGTTCATCCTCAGACAATTTATACA 57.486 29.630 0.00 0.00 0.00 2.29
5776 6787 3.065371 GCCTTGGTTATGTGTCTATGTGC 59.935 47.826 0.00 0.00 0.00 4.57
5797 6808 4.777896 TGCAACCTCTGTCCTAATAGTCTT 59.222 41.667 0.00 0.00 0.00 3.01
5810 6821 8.400947 GTCCTAATAGTCTTGTCACGTATTACA 58.599 37.037 0.00 0.00 0.00 2.41
5837 6850 8.539770 CAAGTAGAGAAAAGTCTTGCAATCTA 57.460 34.615 0.00 0.00 32.80 1.98
5844 6857 9.102757 GAGAAAAGTCTTGCAATCTATATGTGA 57.897 33.333 0.00 0.00 32.80 3.58
5845 6858 9.453572 AGAAAAGTCTTGCAATCTATATGTGAA 57.546 29.630 0.00 0.00 0.00 3.18
5870 6884 1.884579 CATAGGATGTTCCAGGCATGC 59.115 52.381 9.90 9.90 39.61 4.06
5899 6913 9.252962 CACTTTCATTTTGATTTCTAACTTGCT 57.747 29.630 0.00 0.00 0.00 3.91
5912 6926 8.539770 TTTCTAACTTGCTATAGCTATCATGC 57.460 34.615 24.61 13.42 42.66 4.06
5913 6927 7.232118 TCTAACTTGCTATAGCTATCATGCA 57.768 36.000 24.61 15.75 42.66 3.96
5914 6928 7.845037 TCTAACTTGCTATAGCTATCATGCAT 58.155 34.615 24.61 13.71 42.66 3.96
5915 6929 8.971073 TCTAACTTGCTATAGCTATCATGCATA 58.029 33.333 24.61 13.98 42.66 3.14
5917 6931 8.489990 AACTTGCTATAGCTATCATGCATAAG 57.510 34.615 24.61 16.75 42.66 1.73
5918 6932 7.619050 ACTTGCTATAGCTATCATGCATAAGT 58.381 34.615 24.61 17.32 42.66 2.24
5919 6933 8.753133 ACTTGCTATAGCTATCATGCATAAGTA 58.247 33.333 24.61 11.07 42.66 2.24
5920 6934 8.932945 TTGCTATAGCTATCATGCATAAGTAC 57.067 34.615 24.61 0.00 42.66 2.73
5921 6935 8.066612 TGCTATAGCTATCATGCATAAGTACA 57.933 34.615 24.61 0.00 42.66 2.90
5922 6936 8.699130 TGCTATAGCTATCATGCATAAGTACAT 58.301 33.333 24.61 0.00 42.66 2.29
5923 6937 8.976471 GCTATAGCTATCATGCATAAGTACATG 58.024 37.037 17.75 0.00 40.43 3.21
5926 6940 6.169094 AGCTATCATGCATAAGTACATGGAC 58.831 40.000 0.00 0.00 43.12 4.02
5927 6941 5.352569 GCTATCATGCATAAGTACATGGACC 59.647 44.000 3.84 0.00 43.12 4.46
5928 6942 4.769345 TCATGCATAAGTACATGGACCA 57.231 40.909 3.84 0.00 43.12 4.02
5931 6945 4.568072 TGCATAAGTACATGGACCAGTT 57.432 40.909 3.84 0.00 0.00 3.16
5933 6947 4.941263 TGCATAAGTACATGGACCAGTTTC 59.059 41.667 3.84 0.00 0.00 2.78
5953 9633 8.195436 CAGTTTCATTTCGACTAGGATAGGTTA 58.805 37.037 0.00 0.00 44.97 2.85
5959 9639 9.804758 CATTTCGACTAGGATAGGTTATATTCC 57.195 37.037 0.00 0.00 44.97 3.01
5967 9647 7.067496 AGGATAGGTTATATTCCATATGCCG 57.933 40.000 0.00 0.00 31.33 5.69
5968 9648 6.615726 AGGATAGGTTATATTCCATATGCCGT 59.384 38.462 0.00 0.00 31.33 5.68
5969 9649 7.127339 AGGATAGGTTATATTCCATATGCCGTT 59.873 37.037 0.00 0.00 31.33 4.44
5970 9650 7.226720 GGATAGGTTATATTCCATATGCCGTTG 59.773 40.741 0.00 0.00 31.33 4.10
5971 9651 5.876357 AGGTTATATTCCATATGCCGTTGT 58.124 37.500 0.00 0.00 31.33 3.32
5972 9652 7.011499 AGGTTATATTCCATATGCCGTTGTA 57.989 36.000 0.00 0.00 31.33 2.41
5973 9653 7.455058 AGGTTATATTCCATATGCCGTTGTAA 58.545 34.615 0.00 0.00 31.33 2.41
5974 9654 8.107095 AGGTTATATTCCATATGCCGTTGTAAT 58.893 33.333 0.00 0.00 31.33 1.89
5975 9655 8.181573 GGTTATATTCCATATGCCGTTGTAATG 58.818 37.037 0.00 0.00 0.00 1.90
5976 9656 3.980646 TTCCATATGCCGTTGTAATGC 57.019 42.857 0.00 0.00 0.00 3.56
5977 9657 2.924421 TCCATATGCCGTTGTAATGCA 58.076 42.857 0.00 0.00 39.68 3.96
5978 9658 3.282885 TCCATATGCCGTTGTAATGCAA 58.717 40.909 0.00 0.00 38.69 4.08
5994 9674 9.486497 TTGTAATGCAACAATTGTATTGTCATT 57.514 25.926 22.21 22.21 44.07 2.57
5995 9675 9.486497 TGTAATGCAACAATTGTATTGTCATTT 57.514 25.926 22.96 14.63 44.07 2.32
5999 9679 9.656040 ATGCAACAATTGTATTGTCATTTATGT 57.344 25.926 12.39 0.00 31.69 2.29
6000 9680 9.486497 TGCAACAATTGTATTGTCATTTATGTT 57.514 25.926 12.39 0.00 0.00 2.71
6012 9692 9.762933 ATTGTCATTTATGTTTTGTTACTTGCT 57.237 25.926 0.00 0.00 0.00 3.91
6013 9693 8.795786 TGTCATTTATGTTTTGTTACTTGCTC 57.204 30.769 0.00 0.00 0.00 4.26
6014 9694 7.865385 TGTCATTTATGTTTTGTTACTTGCTCC 59.135 33.333 0.00 0.00 0.00 4.70
6015 9695 7.865385 GTCATTTATGTTTTGTTACTTGCTCCA 59.135 33.333 0.00 0.00 0.00 3.86
6016 9696 8.417106 TCATTTATGTTTTGTTACTTGCTCCAA 58.583 29.630 0.00 0.00 0.00 3.53
6017 9697 9.039870 CATTTATGTTTTGTTACTTGCTCCAAA 57.960 29.630 0.00 0.00 0.00 3.28
6018 9698 9.606631 ATTTATGTTTTGTTACTTGCTCCAAAA 57.393 25.926 0.00 0.00 35.18 2.44
6019 9699 9.606631 TTTATGTTTTGTTACTTGCTCCAAAAT 57.393 25.926 0.00 0.00 38.57 1.82
6020 9700 6.900568 TGTTTTGTTACTTGCTCCAAAATG 57.099 33.333 0.00 0.00 38.57 2.32
6021 9701 6.402222 TGTTTTGTTACTTGCTCCAAAATGT 58.598 32.000 0.00 0.00 38.57 2.71
6022 9702 6.533367 TGTTTTGTTACTTGCTCCAAAATGTC 59.467 34.615 0.00 0.00 38.57 3.06
6023 9703 6.463995 TTTGTTACTTGCTCCAAAATGTCT 57.536 33.333 0.00 0.00 0.00 3.41
6038 9718 7.812191 TCCAAAATGTCTGTTATAATGCAACAC 59.188 33.333 0.00 0.00 32.64 3.32
6039 9719 7.598118 CCAAAATGTCTGTTATAATGCAACACA 59.402 33.333 0.00 0.00 32.64 3.72
6040 9720 8.427012 CAAAATGTCTGTTATAATGCAACACAC 58.573 33.333 0.00 0.00 32.64 3.82
6055 9735 2.466846 ACACACGTGTTCTCCTTTACG 58.533 47.619 20.79 6.11 41.83 3.18
6075 9757 3.059188 ACGTTTTGTTACTCGCTCCAATG 60.059 43.478 0.00 0.00 0.00 2.82
6090 9773 6.428465 TCGCTCCAATGTGTTTAGTTATTTGA 59.572 34.615 0.00 0.00 0.00 2.69
6117 9800 2.700897 CCGTCCTCCATTCTGTTCCTAT 59.299 50.000 0.00 0.00 0.00 2.57
6387 10336 6.183361 ACCAAGGCAGTTCAGTAGTTTAAGTA 60.183 38.462 0.00 0.00 0.00 2.24
6388 10337 6.708949 CCAAGGCAGTTCAGTAGTTTAAGTAA 59.291 38.462 0.00 0.00 0.00 2.24
6461 10414 1.961793 GCTATTGGCACCAACCGATA 58.038 50.000 3.77 0.00 38.88 2.92
6544 10498 6.183360 GGCACTGCCTGTTAAATTAATCTGAT 60.183 38.462 13.28 0.00 46.69 2.90
6579 10533 5.374921 AGATGAATCGAATTTCAGCATCCT 58.625 37.500 16.74 3.44 42.89 3.24
6593 10547 4.526650 TCAGCATCCTTCTTATACGCCATA 59.473 41.667 0.00 0.00 0.00 2.74
6596 10550 6.699204 CAGCATCCTTCTTATACGCCATATAG 59.301 42.308 0.00 0.00 0.00 1.31
6597 10551 5.463724 GCATCCTTCTTATACGCCATATAGC 59.536 44.000 0.00 0.00 0.00 2.97
6598 10552 6.573434 CATCCTTCTTATACGCCATATAGCA 58.427 40.000 0.00 0.00 0.00 3.49
6599 10553 6.599356 TCCTTCTTATACGCCATATAGCAA 57.401 37.500 0.00 0.00 0.00 3.91
6600 10554 6.631016 TCCTTCTTATACGCCATATAGCAAG 58.369 40.000 0.00 0.00 0.00 4.01
6601 10555 6.210784 TCCTTCTTATACGCCATATAGCAAGT 59.789 38.462 0.00 0.00 0.00 3.16
6602 10556 7.395206 TCCTTCTTATACGCCATATAGCAAGTA 59.605 37.037 0.00 0.00 0.00 2.24
6604 10558 7.698506 TCTTATACGCCATATAGCAAGTACT 57.301 36.000 0.00 0.00 0.00 2.73
6624 10757 6.771749 AGTACTAGTAGCATACAGAACGGATT 59.228 38.462 1.87 0.00 46.26 3.01
6686 10823 2.736721 GTTGCAACGCTAGTCTTCATGA 59.263 45.455 14.90 0.00 0.00 3.07
6697 10834 5.396213 GCTAGTCTTCATGATTCTGGGAACT 60.396 44.000 0.00 0.00 0.00 3.01
6876 12440 4.668576 ATGCAGATACTGTTTGTCAACG 57.331 40.909 0.00 0.00 35.40 4.10
6889 12453 2.493713 GTCAACGGACGCTCATCTAT 57.506 50.000 0.00 0.00 33.68 1.98
6890 12454 2.120232 GTCAACGGACGCTCATCTATG 58.880 52.381 0.00 0.00 33.68 2.23
6891 12455 0.855349 CAACGGACGCTCATCTATGC 59.145 55.000 0.00 0.00 0.00 3.14
6892 12456 0.747255 AACGGACGCTCATCTATGCT 59.253 50.000 0.00 0.00 0.00 3.79
6893 12457 1.605753 ACGGACGCTCATCTATGCTA 58.394 50.000 0.00 0.00 0.00 3.49
6963 12527 9.920946 AATTATCAGGCTAAGGTATTTCTTTCA 57.079 29.630 0.00 0.00 0.00 2.69
7002 12567 3.193479 CCATGGCTTAAACTTGGAACCTC 59.807 47.826 0.00 0.00 35.74 3.85
7046 12753 8.004215 AGCCTTAATGTAACATAATCCATTCCA 58.996 33.333 0.00 0.00 0.00 3.53
7134 12848 7.701539 TTGCCATTTAGATTTCTTGCTTCTA 57.298 32.000 0.00 0.00 0.00 2.10
7303 13026 9.139174 ACGATTTGCTTACCTTTAATCATTTTG 57.861 29.630 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.169672 CAGCGGCCACATTTGAAGAG 59.830 55.000 2.24 0.00 0.00 2.85
1 2 0.250684 TCAGCGGCCACATTTGAAGA 60.251 50.000 2.24 0.00 0.00 2.87
2 3 0.109597 GTCAGCGGCCACATTTGAAG 60.110 55.000 2.24 0.00 0.00 3.02
3 4 1.523154 GGTCAGCGGCCACATTTGAA 61.523 55.000 2.24 0.00 0.00 2.69
4 5 1.971167 GGTCAGCGGCCACATTTGA 60.971 57.895 2.24 0.00 0.00 2.69
5 6 2.568090 GGTCAGCGGCCACATTTG 59.432 61.111 2.24 0.00 0.00 2.32
6 7 3.055719 CGGTCAGCGGCCACATTT 61.056 61.111 2.24 0.00 0.00 2.32
10 11 4.778143 AATCCGGTCAGCGGCCAC 62.778 66.667 11.45 0.00 0.00 5.01
11 12 4.467084 GAATCCGGTCAGCGGCCA 62.467 66.667 11.45 0.00 0.00 5.36
12 13 4.162690 AGAATCCGGTCAGCGGCC 62.163 66.667 11.45 1.99 0.00 6.13
13 14 2.892425 CAGAATCCGGTCAGCGGC 60.892 66.667 11.45 0.00 0.00 6.53
14 15 2.202932 CCAGAATCCGGTCAGCGG 60.203 66.667 9.68 9.68 0.00 5.52
15 16 1.079127 AACCAGAATCCGGTCAGCG 60.079 57.895 0.00 0.00 34.99 5.18
16 17 1.084370 CGAACCAGAATCCGGTCAGC 61.084 60.000 0.00 0.00 34.99 4.26
17 18 0.530744 TCGAACCAGAATCCGGTCAG 59.469 55.000 0.00 0.00 34.99 3.51
18 19 0.970640 TTCGAACCAGAATCCGGTCA 59.029 50.000 0.00 0.00 34.99 4.02
19 20 2.000447 CTTTCGAACCAGAATCCGGTC 59.000 52.381 0.00 0.00 34.99 4.79
20 21 1.346722 ACTTTCGAACCAGAATCCGGT 59.653 47.619 0.00 0.00 38.85 5.28
21 22 2.094762 ACTTTCGAACCAGAATCCGG 57.905 50.000 0.00 0.00 0.00 5.14
22 23 4.491676 TCTAACTTTCGAACCAGAATCCG 58.508 43.478 0.00 0.00 0.00 4.18
23 24 6.702282 CCTATCTAACTTTCGAACCAGAATCC 59.298 42.308 0.00 0.00 0.00 3.01
24 25 7.490000 TCCTATCTAACTTTCGAACCAGAATC 58.510 38.462 0.00 0.00 0.00 2.52
25 26 7.419711 TCCTATCTAACTTTCGAACCAGAAT 57.580 36.000 0.00 0.00 0.00 2.40
26 27 6.845758 TCCTATCTAACTTTCGAACCAGAA 57.154 37.500 0.00 0.00 0.00 3.02
27 28 6.605995 TGATCCTATCTAACTTTCGAACCAGA 59.394 38.462 0.00 0.00 0.00 3.86
28 29 6.697892 GTGATCCTATCTAACTTTCGAACCAG 59.302 42.308 0.00 0.00 0.00 4.00
29 30 6.406624 GGTGATCCTATCTAACTTTCGAACCA 60.407 42.308 0.00 0.00 0.00 3.67
30 31 5.984323 GGTGATCCTATCTAACTTTCGAACC 59.016 44.000 0.00 0.00 0.00 3.62
31 32 6.807789 AGGTGATCCTATCTAACTTTCGAAC 58.192 40.000 0.00 0.00 43.12 3.95
47 48 4.792068 TCAAATCCCAACATAGGTGATCC 58.208 43.478 0.00 0.00 0.00 3.36
48 49 5.684704 TCTCAAATCCCAACATAGGTGATC 58.315 41.667 0.00 0.00 0.00 2.92
49 50 5.715439 TCTCAAATCCCAACATAGGTGAT 57.285 39.130 0.00 0.00 0.00 3.06
50 51 5.191522 TCATCTCAAATCCCAACATAGGTGA 59.808 40.000 0.00 0.00 0.00 4.02
51 52 5.439721 TCATCTCAAATCCCAACATAGGTG 58.560 41.667 0.00 0.00 0.00 4.00
52 53 5.715439 TCATCTCAAATCCCAACATAGGT 57.285 39.130 0.00 0.00 0.00 3.08
53 54 6.066690 ACATCATCTCAAATCCCAACATAGG 58.933 40.000 0.00 0.00 0.00 2.57
54 55 7.283807 TCAACATCATCTCAAATCCCAACATAG 59.716 37.037 0.00 0.00 0.00 2.23
55 56 7.067372 GTCAACATCATCTCAAATCCCAACATA 59.933 37.037 0.00 0.00 0.00 2.29
56 57 5.953548 TCAACATCATCTCAAATCCCAACAT 59.046 36.000 0.00 0.00 0.00 2.71
57 58 5.183713 GTCAACATCATCTCAAATCCCAACA 59.816 40.000 0.00 0.00 0.00 3.33
58 59 5.183713 TGTCAACATCATCTCAAATCCCAAC 59.816 40.000 0.00 0.00 0.00 3.77
59 60 5.323581 TGTCAACATCATCTCAAATCCCAA 58.676 37.500 0.00 0.00 0.00 4.12
108 109 1.006832 AATGTGCTACAACGATCGCC 58.993 50.000 16.60 0.00 0.00 5.54
109 110 1.658596 TCAATGTGCTACAACGATCGC 59.341 47.619 16.60 0.00 0.00 4.58
134 135 2.108514 CATGCTCGGGTCGCACAAT 61.109 57.895 0.00 0.00 40.65 2.71
140 141 2.051804 GATTTGGCATGCTCGGGTCG 62.052 60.000 18.92 0.00 0.00 4.79
164 165 5.993055 TCATTCTTGAAGCATCACAGGATA 58.007 37.500 0.00 0.00 34.61 2.59
193 200 7.497249 GCAATATCAGAGTCATGTTAAGAAGGT 59.503 37.037 0.00 0.00 0.00 3.50
194 201 7.041508 GGCAATATCAGAGTCATGTTAAGAAGG 60.042 40.741 0.00 0.00 0.00 3.46
234 241 9.761504 TGCATTGAAAATGAAAAGAACTATTCA 57.238 25.926 4.18 0.00 39.66 2.57
238 245 7.656542 TGCATGCATTGAAAATGAAAAGAACTA 59.343 29.630 18.46 0.00 0.00 2.24
253 260 3.062122 TCTCTTGACTGCATGCATTGA 57.938 42.857 22.97 7.04 0.00 2.57
287 294 1.676967 CAGAAGCAAGAGGGTGGCC 60.677 63.158 0.00 0.00 0.00 5.36
296 303 1.482593 ACGTCCTATCCCAGAAGCAAG 59.517 52.381 0.00 0.00 0.00 4.01
308 315 2.432300 CGCCCCTCCAACGTCCTAT 61.432 63.158 0.00 0.00 0.00 2.57
309 316 3.072468 CGCCCCTCCAACGTCCTA 61.072 66.667 0.00 0.00 0.00 2.94
331 338 0.255318 CTTGCCTGGATCTGCTCCTT 59.745 55.000 0.00 0.00 45.21 3.36
455 462 0.329596 GGGAAGCAAGGATGAGTGGT 59.670 55.000 0.00 0.00 0.00 4.16
521 529 4.183858 CACCACCACCACCACCGT 62.184 66.667 0.00 0.00 0.00 4.83
531 539 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
533 541 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
534 542 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
535 543 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
536 544 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
539 547 4.868116 ACGCACCACCACCACCAC 62.868 66.667 0.00 0.00 0.00 4.16
540 548 4.866224 CACGCACCACCACCACCA 62.866 66.667 0.00 0.00 0.00 4.17
590 609 0.617413 AATGCACTCCACTCCTCCTG 59.383 55.000 0.00 0.00 0.00 3.86
660 682 0.179056 CAACCCAGAACAGTGACGGT 60.179 55.000 0.00 0.00 0.00 4.83
662 684 0.884704 CCCAACCCAGAACAGTGACG 60.885 60.000 0.00 0.00 0.00 4.35
663 685 0.472471 TCCCAACCCAGAACAGTGAC 59.528 55.000 0.00 0.00 0.00 3.67
665 687 0.250901 CCTCCCAACCCAGAACAGTG 60.251 60.000 0.00 0.00 0.00 3.66
666 688 2.069165 GCCTCCCAACCCAGAACAGT 62.069 60.000 0.00 0.00 0.00 3.55
667 689 1.303643 GCCTCCCAACCCAGAACAG 60.304 63.158 0.00 0.00 0.00 3.16
669 691 2.035783 GGCCTCCCAACCCAGAAC 59.964 66.667 0.00 0.00 0.00 3.01
670 692 3.264845 GGGCCTCCCAACCCAGAA 61.265 66.667 0.84 0.00 46.22 3.02
679 701 1.839894 CCAACTATCTGGGCCTCCC 59.160 63.158 4.53 0.00 45.71 4.30
701 729 2.125512 CTTTCTGGACCTCGGCCG 60.126 66.667 22.12 22.12 0.00 6.13
703 731 2.436824 GCCTTTCTGGACCTCGGC 60.437 66.667 0.00 0.00 38.35 5.54
714 742 1.401905 CAGCGAATAGTTGGGCCTTTC 59.598 52.381 4.53 0.00 0.00 2.62
716 744 0.394352 CCAGCGAATAGTTGGGCCTT 60.394 55.000 4.53 0.00 46.12 4.35
728 756 4.728102 CGTGTACGGCCCAGCGAA 62.728 66.667 0.00 0.00 35.37 4.70
765 793 2.715046 TCCGGTAGAAGCGAAGAAGTA 58.285 47.619 0.00 0.00 42.41 2.24
768 796 2.680577 GTTTCCGGTAGAAGCGAAGAA 58.319 47.619 0.00 0.00 42.41 2.52
893 940 2.031870 GTTGGCTTGGGTCAAAGAAGT 58.968 47.619 0.00 0.00 38.87 3.01
897 944 0.389025 GTGGTTGGCTTGGGTCAAAG 59.611 55.000 0.00 0.00 38.87 2.77
898 945 1.045911 GGTGGTTGGCTTGGGTCAAA 61.046 55.000 0.00 0.00 38.87 2.69
1074 1140 2.757077 CGCCAAGACTCCCCCTTT 59.243 61.111 0.00 0.00 0.00 3.11
1288 1354 3.204827 CAGAAGGAATGGGCGCGG 61.205 66.667 8.83 0.00 0.00 6.46
1431 1652 3.429684 GGCAAAAGAAACCTTTCGGACAA 60.430 43.478 0.00 0.00 41.92 3.18
1436 1657 3.115554 CACAGGCAAAAGAAACCTTTCG 58.884 45.455 0.00 0.00 41.92 3.46
1452 1673 6.459848 GCCTAGTACACTAGTTGTATCACAGG 60.460 46.154 13.87 6.49 42.82 4.00
1468 1801 2.165030 GCCAAGTACGAAGCCTAGTACA 59.835 50.000 8.23 0.00 43.98 2.90
1485 1818 0.675083 CAATCTTGTGCAGTGGCCAA 59.325 50.000 7.24 0.00 40.13 4.52
1511 1971 2.546195 AGCTACGTACTTCTGAAGCG 57.454 50.000 17.00 15.00 35.17 4.68
1587 2049 1.908619 CTTAGGCCCCCAAGCATTTTT 59.091 47.619 0.00 0.00 0.00 1.94
1606 2068 6.617782 AGATAATATGCTCCAGTATGTGCT 57.382 37.500 0.00 0.00 35.25 4.40
1617 2079 9.585099 CATCTTCTAGTCCAAGATAATATGCTC 57.415 37.037 5.17 0.00 38.33 4.26
1628 2090 4.285863 AGGAGGTCATCTTCTAGTCCAAG 58.714 47.826 0.00 0.00 26.83 3.61
1629 2091 4.338795 AGGAGGTCATCTTCTAGTCCAA 57.661 45.455 0.00 0.00 26.83 3.53
1680 2145 2.418368 TAACCCATAAGGCAGCAGTG 57.582 50.000 0.00 0.00 40.58 3.66
1722 2235 5.989777 AGGCGGCACTATAATAAGTTAACTG 59.010 40.000 13.08 0.00 0.00 3.16
1742 2255 4.574828 ACAATTAGCTAACACCATAAGGCG 59.425 41.667 8.70 0.00 39.06 5.52
1749 2262 4.212425 CACGTGAACAATTAGCTAACACCA 59.788 41.667 10.90 0.39 0.00 4.17
1752 2265 5.524281 TGAACACGTGAACAATTAGCTAACA 59.476 36.000 25.01 0.00 0.00 2.41
1788 2301 7.443302 TGAATGAAGGAGAAGTCAATATCCT 57.557 36.000 0.00 0.00 44.12 3.24
1844 2358 4.040755 AGGCCACCATTATACTCTCAAGT 58.959 43.478 5.01 0.00 39.66 3.16
1865 2379 3.490526 CCCTGACAAATGAAACGCAAAAG 59.509 43.478 0.00 0.00 0.00 2.27
1868 2382 1.269517 GCCCTGACAAATGAAACGCAA 60.270 47.619 0.00 0.00 0.00 4.85
1893 2407 4.174009 CTCCAAAAGCAATTGATGAGCAG 58.826 43.478 10.34 0.00 31.84 4.24
1989 2503 4.350368 TTCTGTGTGAATGCTACCTTGA 57.650 40.909 0.00 0.00 0.00 3.02
1997 2511 8.236586 TCAATAGTAATGTTTCTGTGTGAATGC 58.763 33.333 0.00 0.00 34.24 3.56
2016 2532 9.911788 AAAGTGGTGATATTCATCTTCAATAGT 57.088 29.630 0.00 0.00 31.93 2.12
2098 2615 5.569059 GCTAACATCGTTCATTTGTGGAAAG 59.431 40.000 0.00 0.00 0.00 2.62
2106 2623 5.957842 TTTCCAGCTAACATCGTTCATTT 57.042 34.783 0.00 0.00 0.00 2.32
2177 2726 5.795972 AGTTGGCTAGTTTAGGAACTTCTC 58.204 41.667 0.00 0.00 43.48 2.87
2326 2908 4.509970 TGAATACAACACTGTGAAACCTCG 59.490 41.667 15.86 0.00 36.96 4.63
2417 3000 8.865090 AGCTATCAGTACTCTAGCAAAATATGT 58.135 33.333 25.20 8.54 40.23 2.29
2439 3022 5.626142 TCCAGTTTAACAACCAATGAGCTA 58.374 37.500 0.00 0.00 32.70 3.32
2444 3027 5.200368 AGCTTCCAGTTTAACAACCAATG 57.800 39.130 0.00 0.00 32.70 2.82
2469 3052 4.060205 GCAATGATTTGTGCCAAGAAAGT 58.940 39.130 0.00 0.00 35.17 2.66
2688 3296 6.561519 AACTAAGGCTGTACTCCAATATGT 57.438 37.500 7.34 0.00 0.00 2.29
2732 3340 9.353999 GAAAATGGGTACTGATATGAAACAAAC 57.646 33.333 0.00 0.00 0.00 2.93
2950 3558 7.172875 CCAAATGATAGACAGAGTGAATGGATC 59.827 40.741 0.00 0.00 0.00 3.36
2952 3560 6.070021 ACCAAATGATAGACAGAGTGAATGGA 60.070 38.462 0.00 0.00 0.00 3.41
3157 3767 8.257306 TGAAGAAACAAAAGCCTGTAAAGATTT 58.743 29.630 0.00 0.00 0.00 2.17
3355 3965 9.995003 AATAATCAAAATGCAGAAGTACCAAAA 57.005 25.926 0.00 0.00 0.00 2.44
3436 4047 3.259123 AGGCATTTTAGTTCAAAGCCCAG 59.741 43.478 0.00 0.00 41.45 4.45
3437 4048 3.238597 AGGCATTTTAGTTCAAAGCCCA 58.761 40.909 0.00 0.00 41.45 5.36
3471 4082 1.084289 GTCGTAGGTCATTGCCAACC 58.916 55.000 0.97 0.00 35.69 3.77
3474 4085 0.682292 TGTGTCGTAGGTCATTGCCA 59.318 50.000 0.97 0.00 0.00 4.92
3581 4216 8.193250 ACCAACGAAAACATAGTATGATACAC 57.807 34.615 17.13 3.74 0.00 2.90
3846 4481 5.123502 AGTGCTAGCAATGTCAAGAATCTTG 59.876 40.000 21.29 16.39 0.00 3.02
3915 4739 2.216898 GAGGAGGCGAAAGATGAATGG 58.783 52.381 0.00 0.00 0.00 3.16
3927 4751 2.031682 CACTTTGTTCTTTGAGGAGGCG 60.032 50.000 0.00 0.00 0.00 5.52
3938 4762 3.365472 AGCCTTTTCACCACTTTGTTCT 58.635 40.909 0.00 0.00 0.00 3.01
3973 4797 2.224606 CTTTGAGTTGCAGGAGCTTCA 58.775 47.619 0.00 0.00 42.74 3.02
4051 4877 6.713762 TCAAATAGGAAGGCATTTGTATGG 57.286 37.500 7.00 0.00 41.06 2.74
4071 4897 4.202010 GCACAAAACTTAGCAACTCCTCAA 60.202 41.667 0.00 0.00 0.00 3.02
4108 4934 5.460091 GCGCAAAACTCTTGAGATTTTCTTT 59.540 36.000 0.30 0.00 0.00 2.52
4119 4949 0.854705 GCCAAAGCGCAAAACTCTTG 59.145 50.000 11.47 1.01 0.00 3.02
4174 5005 3.664107 TGAACAGTACAGATCAAGGCAC 58.336 45.455 0.00 0.00 0.00 5.01
4313 5166 9.932207 TGTGAATTCATGAAGCATTAGAAATTT 57.068 25.926 12.12 0.00 0.00 1.82
4314 5167 9.362539 GTGTGAATTCATGAAGCATTAGAAATT 57.637 29.630 12.12 0.00 0.00 1.82
4315 5168 7.699391 CGTGTGAATTCATGAAGCATTAGAAAT 59.301 33.333 12.12 0.00 0.00 2.17
4356 5221 7.479352 TCAAAACACATCATGGGTATGAATT 57.521 32.000 6.07 0.00 45.82 2.17
4364 5229 5.649395 ACAGACTATCAAAACACATCATGGG 59.351 40.000 0.00 0.00 0.00 4.00
4365 5230 6.748333 ACAGACTATCAAAACACATCATGG 57.252 37.500 0.00 0.00 0.00 3.66
4396 5261 4.659115 CATGGATCATATTGCTCTCCCAA 58.341 43.478 0.00 0.00 0.00 4.12
4541 5406 0.035317 ACGTGAAGCTGCTCAATGGA 59.965 50.000 1.00 0.00 0.00 3.41
4543 5408 2.738846 ACTTACGTGAAGCTGCTCAATG 59.261 45.455 1.00 2.31 38.92 2.82
4549 5414 2.349532 GGACAAACTTACGTGAAGCTGC 60.350 50.000 0.00 0.00 38.92 5.25
4550 5415 2.869801 TGGACAAACTTACGTGAAGCTG 59.130 45.455 0.00 2.76 38.92 4.24
4551 5416 3.188159 TGGACAAACTTACGTGAAGCT 57.812 42.857 0.00 0.00 38.92 3.74
4553 5418 4.219033 GCAATGGACAAACTTACGTGAAG 58.781 43.478 0.00 0.59 41.37 3.02
4556 5421 3.617540 TGCAATGGACAAACTTACGTG 57.382 42.857 0.00 0.00 0.00 4.49
4641 5522 4.735985 TGGAGCGTGAAATGAAATCAATG 58.264 39.130 0.00 0.00 0.00 2.82
4645 5526 6.555315 ACTTTATGGAGCGTGAAATGAAATC 58.445 36.000 0.00 0.00 0.00 2.17
4646 5527 6.515272 ACTTTATGGAGCGTGAAATGAAAT 57.485 33.333 0.00 0.00 0.00 2.17
4650 5531 4.273480 CCCTACTTTATGGAGCGTGAAATG 59.727 45.833 0.00 0.00 0.00 2.32
4654 5535 2.463752 ACCCTACTTTATGGAGCGTGA 58.536 47.619 0.00 0.00 0.00 4.35
4806 5690 5.066593 ACAGGAGGAAAAGAGAATGTTGTC 58.933 41.667 0.00 0.00 0.00 3.18
4807 5691 5.053978 ACAGGAGGAAAAGAGAATGTTGT 57.946 39.130 0.00 0.00 0.00 3.32
4821 5706 2.506231 ACATCTCTAGACGACAGGAGGA 59.494 50.000 0.00 0.00 0.00 3.71
4827 5712 9.899226 CATATTAATTGACATCTCTAGACGACA 57.101 33.333 0.00 0.00 0.00 4.35
4884 5819 8.246180 ACCACATAAATTTAGAGACATGCAAAG 58.754 33.333 3.94 0.00 0.00 2.77
4887 5822 6.883756 TCACCACATAAATTTAGAGACATGCA 59.116 34.615 3.94 0.00 0.00 3.96
4928 5863 8.216423 AGATGCCATCTCTAAGTCACATATTTT 58.784 33.333 0.08 0.00 33.42 1.82
4941 5876 7.474445 AGAATAACCTCTAGATGCCATCTCTA 58.526 38.462 11.20 0.00 40.76 2.43
4983 5918 0.315869 GTCACTGGCGTTCACGTTTG 60.316 55.000 0.62 0.00 42.22 2.93
5010 5946 2.732412 TAGCGGATCTGCTTATCAGC 57.268 50.000 32.99 13.27 44.46 4.26
5012 5948 4.202253 ACATGTTAGCGGATCTGCTTATCA 60.202 41.667 32.99 25.98 44.46 2.15
5038 5974 7.846644 TGTTAAAAGAGTAAACAAGAACGGA 57.153 32.000 0.00 0.00 30.54 4.69
5085 6021 7.227461 CAGTTAGTGTTAATAACTTCACTGCG 58.773 38.462 4.67 0.00 40.61 5.18
5105 6041 5.544176 AGATCTTTCACAGTCCTTCCAGTTA 59.456 40.000 0.00 0.00 0.00 2.24
5160 6096 3.942829 ACATCCATATACGAAGCCCATG 58.057 45.455 0.00 0.00 0.00 3.66
5219 6155 2.191400 AGAGCCATCTTTGAGTGCCTA 58.809 47.619 0.00 0.00 28.57 3.93
5253 6189 5.425217 TGAATCCTAAGTCTACAGCATGGAA 59.575 40.000 0.00 0.00 43.62 3.53
5289 6259 9.180678 GTGACAATATGTTTAACAGTTTTGAGG 57.819 33.333 17.91 3.22 0.00 3.86
5291 6261 8.687242 TGGTGACAATATGTTTAACAGTTTTGA 58.313 29.630 17.91 0.00 37.44 2.69
5293 6263 8.470805 TGTGGTGACAATATGTTTAACAGTTTT 58.529 29.630 3.63 0.00 46.06 2.43
5297 6267 7.387673 TCTCTGTGGTGACAATATGTTTAACAG 59.612 37.037 3.63 0.00 46.06 3.16
5298 6268 7.220740 TCTCTGTGGTGACAATATGTTTAACA 58.779 34.615 0.00 0.00 46.06 2.41
5299 6269 7.667043 TCTCTGTGGTGACAATATGTTTAAC 57.333 36.000 0.00 0.00 46.06 2.01
5300 6270 7.936847 ACTTCTCTGTGGTGACAATATGTTTAA 59.063 33.333 0.00 0.00 46.06 1.52
5302 6272 6.205464 CACTTCTCTGTGGTGACAATATGTTT 59.795 38.462 0.00 0.00 46.06 2.83
5317 6287 6.215636 ACCATCTTATAAACCCACTTCTCTGT 59.784 38.462 0.00 0.00 0.00 3.41
5318 6288 6.653989 ACCATCTTATAAACCCACTTCTCTG 58.346 40.000 0.00 0.00 0.00 3.35
5377 6347 5.255687 TGTTAAATGTGGTGAGAGCATGAT 58.744 37.500 0.00 0.00 0.00 2.45
5381 6351 3.191162 GCATGTTAAATGTGGTGAGAGCA 59.809 43.478 0.00 0.00 0.00 4.26
5382 6352 3.441572 AGCATGTTAAATGTGGTGAGAGC 59.558 43.478 0.00 0.00 0.00 4.09
5388 6358 4.935352 ACACAAGCATGTTAAATGTGGT 57.065 36.364 14.77 1.78 44.24 4.16
5389 6359 7.887996 AATTACACAAGCATGTTAAATGTGG 57.112 32.000 14.77 1.29 44.24 4.17
5397 6367 6.160576 AGGTCAAAATTACACAAGCATGTT 57.839 33.333 0.00 0.00 37.82 2.71
5403 6387 8.458843 CCTTATGGTAGGTCAAAATTACACAAG 58.541 37.037 0.00 0.00 0.00 3.16
5437 6421 1.843851 ACAGAGTGGGAAAAGTGACCA 59.156 47.619 0.00 0.00 0.00 4.02
5438 6422 2.222027 CACAGAGTGGGAAAAGTGACC 58.778 52.381 0.00 0.00 0.00 4.02
5515 6523 3.997021 GTGTCTCCACTGGACAAAGTATG 59.003 47.826 0.00 0.00 43.90 2.39
5516 6524 3.646162 TGTGTCTCCACTGGACAAAGTAT 59.354 43.478 0.00 0.00 43.90 2.12
5550 6558 5.986135 GCTGTATCTAGTTGATGTTACTGGG 59.014 44.000 0.00 0.00 36.65 4.45
5641 6649 3.124297 CGTTGTGATCAAGAAGAAGCCTC 59.876 47.826 0.00 0.00 33.97 4.70
5648 6656 1.522668 TGGGCGTTGTGATCAAGAAG 58.477 50.000 0.00 0.00 33.97 2.85
5659 6667 3.951115 CATGGAATCATGGGCGTTG 57.049 52.632 0.00 0.00 45.19 4.10
5714 6725 6.604396 TGTCTGAGGATGAACAAATTATGCAT 59.396 34.615 3.79 3.79 0.00 3.96
5747 6758 6.515272 AGACACATAACCAAGGCTAAAATG 57.485 37.500 0.00 0.00 0.00 2.32
5748 6759 7.834181 ACATAGACACATAACCAAGGCTAAAAT 59.166 33.333 0.00 0.00 0.00 1.82
5753 6764 4.517285 CACATAGACACATAACCAAGGCT 58.483 43.478 0.00 0.00 0.00 4.58
5776 6787 6.071334 TGACAAGACTATTAGGACAGAGGTTG 60.071 42.308 0.00 0.00 0.00 3.77
5797 6808 5.413523 TCTCTACTTGCTGTAATACGTGACA 59.586 40.000 0.00 0.00 0.00 3.58
5844 6857 4.165950 TGCCTGGAACATCCTATGTGTATT 59.834 41.667 0.00 0.00 44.07 1.89
5845 6858 3.716353 TGCCTGGAACATCCTATGTGTAT 59.284 43.478 0.00 0.00 44.07 2.29
5846 6859 3.111484 TGCCTGGAACATCCTATGTGTA 58.889 45.455 0.00 0.00 44.07 2.90
5847 6860 1.915489 TGCCTGGAACATCCTATGTGT 59.085 47.619 0.00 0.00 44.07 3.72
5848 6861 2.715749 TGCCTGGAACATCCTATGTG 57.284 50.000 0.00 0.00 44.07 3.21
5851 6864 1.779092 AGCATGCCTGGAACATCCTAT 59.221 47.619 15.66 0.00 38.20 2.57
5852 6865 1.216064 AGCATGCCTGGAACATCCTA 58.784 50.000 15.66 0.00 38.20 2.94
5854 6867 1.312815 GTAGCATGCCTGGAACATCC 58.687 55.000 15.66 0.00 38.20 3.51
5856 6869 1.283029 AGTGTAGCATGCCTGGAACAT 59.717 47.619 15.66 0.00 38.20 2.71
5861 6875 1.825090 TGAAAGTGTAGCATGCCTGG 58.175 50.000 15.66 0.00 0.00 4.45
5908 6922 4.454678 ACTGGTCCATGTACTTATGCATG 58.545 43.478 10.16 0.00 45.64 4.06
5910 6924 4.568072 AACTGGTCCATGTACTTATGCA 57.432 40.909 0.00 0.00 0.00 3.96
5911 6925 4.941263 TGAAACTGGTCCATGTACTTATGC 59.059 41.667 0.00 0.00 0.00 3.14
5912 6926 7.630242 AATGAAACTGGTCCATGTACTTATG 57.370 36.000 0.00 0.00 0.00 1.90
5913 6927 7.065803 CGAAATGAAACTGGTCCATGTACTTAT 59.934 37.037 0.00 0.00 0.00 1.73
5914 6928 6.370442 CGAAATGAAACTGGTCCATGTACTTA 59.630 38.462 0.00 0.00 0.00 2.24
5915 6929 5.181245 CGAAATGAAACTGGTCCATGTACTT 59.819 40.000 0.00 0.00 0.00 2.24
5917 6931 4.693566 TCGAAATGAAACTGGTCCATGTAC 59.306 41.667 0.00 0.00 0.00 2.90
5918 6932 4.693566 GTCGAAATGAAACTGGTCCATGTA 59.306 41.667 0.00 0.00 0.00 2.29
5919 6933 3.502211 GTCGAAATGAAACTGGTCCATGT 59.498 43.478 0.00 0.00 0.00 3.21
5920 6934 3.753272 AGTCGAAATGAAACTGGTCCATG 59.247 43.478 0.00 0.00 0.00 3.66
5921 6935 4.021102 AGTCGAAATGAAACTGGTCCAT 57.979 40.909 0.00 0.00 0.00 3.41
5922 6936 3.485463 AGTCGAAATGAAACTGGTCCA 57.515 42.857 0.00 0.00 0.00 4.02
5923 6937 3.933332 CCTAGTCGAAATGAAACTGGTCC 59.067 47.826 0.00 0.00 0.00 4.46
5926 6940 5.986135 CCTATCCTAGTCGAAATGAAACTGG 59.014 44.000 0.00 0.00 0.00 4.00
5927 6941 6.574350 ACCTATCCTAGTCGAAATGAAACTG 58.426 40.000 0.00 0.00 0.00 3.16
5928 6942 6.793505 ACCTATCCTAGTCGAAATGAAACT 57.206 37.500 0.00 0.00 0.00 2.66
5933 6947 9.804758 GGAATATAACCTATCCTAGTCGAAATG 57.195 37.037 0.00 0.00 0.00 2.32
5953 9633 5.709631 TGCATTACAACGGCATATGGAATAT 59.290 36.000 4.56 0.00 41.02 1.28
5968 9648 9.486497 AATGACAATACAATTGTTGCATTACAA 57.514 25.926 17.78 6.43 41.81 2.41
5969 9649 9.486497 AAATGACAATACAATTGTTGCATTACA 57.514 25.926 17.78 13.19 33.61 2.41
5973 9653 9.656040 ACATAAATGACAATACAATTGTTGCAT 57.344 25.926 17.78 13.53 31.96 3.96
5974 9654 9.486497 AACATAAATGACAATACAATTGTTGCA 57.514 25.926 17.78 11.99 31.96 4.08
5986 9666 9.762933 AGCAAGTAACAAAACATAAATGACAAT 57.237 25.926 0.00 0.00 0.00 2.71
5987 9667 9.243637 GAGCAAGTAACAAAACATAAATGACAA 57.756 29.630 0.00 0.00 0.00 3.18
5988 9668 7.865385 GGAGCAAGTAACAAAACATAAATGACA 59.135 33.333 0.00 0.00 0.00 3.58
5989 9669 7.865385 TGGAGCAAGTAACAAAACATAAATGAC 59.135 33.333 0.00 0.00 0.00 3.06
5990 9670 7.946207 TGGAGCAAGTAACAAAACATAAATGA 58.054 30.769 0.00 0.00 0.00 2.57
5991 9671 8.586570 TTGGAGCAAGTAACAAAACATAAATG 57.413 30.769 0.00 0.00 0.00 2.32
5992 9672 9.606631 TTTTGGAGCAAGTAACAAAACATAAAT 57.393 25.926 0.00 0.00 37.74 1.40
5993 9673 9.606631 ATTTTGGAGCAAGTAACAAAACATAAA 57.393 25.926 0.00 0.00 43.12 1.40
5994 9674 9.039870 CATTTTGGAGCAAGTAACAAAACATAA 57.960 29.630 0.00 0.00 43.12 1.90
5995 9675 8.200792 ACATTTTGGAGCAAGTAACAAAACATA 58.799 29.630 0.00 0.00 43.12 2.29
5996 9676 7.047271 ACATTTTGGAGCAAGTAACAAAACAT 58.953 30.769 0.00 0.00 43.12 2.71
5997 9677 6.402222 ACATTTTGGAGCAAGTAACAAAACA 58.598 32.000 0.00 0.00 43.12 2.83
5998 9678 6.756542 AGACATTTTGGAGCAAGTAACAAAAC 59.243 34.615 0.00 0.00 43.12 2.43
5999 9679 6.756074 CAGACATTTTGGAGCAAGTAACAAAA 59.244 34.615 0.00 0.00 44.04 2.44
6000 9680 6.127479 ACAGACATTTTGGAGCAAGTAACAAA 60.127 34.615 0.00 0.00 0.00 2.83
6001 9681 5.359576 ACAGACATTTTGGAGCAAGTAACAA 59.640 36.000 0.00 0.00 0.00 2.83
6002 9682 4.887071 ACAGACATTTTGGAGCAAGTAACA 59.113 37.500 0.00 0.00 0.00 2.41
6003 9683 5.438761 ACAGACATTTTGGAGCAAGTAAC 57.561 39.130 0.00 0.00 0.00 2.50
6004 9684 7.759489 ATAACAGACATTTTGGAGCAAGTAA 57.241 32.000 0.00 0.00 0.00 2.24
6005 9685 8.856153 TTATAACAGACATTTTGGAGCAAGTA 57.144 30.769 0.00 0.00 0.00 2.24
6006 9686 7.759489 TTATAACAGACATTTTGGAGCAAGT 57.241 32.000 0.00 0.00 0.00 3.16
6007 9687 7.221452 GCATTATAACAGACATTTTGGAGCAAG 59.779 37.037 0.00 0.00 0.00 4.01
6008 9688 7.035004 GCATTATAACAGACATTTTGGAGCAA 58.965 34.615 0.00 0.00 0.00 3.91
6009 9689 6.152492 TGCATTATAACAGACATTTTGGAGCA 59.848 34.615 0.00 0.00 0.00 4.26
6010 9690 6.563422 TGCATTATAACAGACATTTTGGAGC 58.437 36.000 0.00 0.00 0.00 4.70
6011 9691 8.028354 TGTTGCATTATAACAGACATTTTGGAG 58.972 33.333 0.00 0.00 33.43 3.86
6012 9692 7.812191 GTGTTGCATTATAACAGACATTTTGGA 59.188 33.333 0.00 0.00 38.58 3.53
6013 9693 7.598118 TGTGTTGCATTATAACAGACATTTTGG 59.402 33.333 0.00 0.00 38.58 3.28
6014 9694 8.427012 GTGTGTTGCATTATAACAGACATTTTG 58.573 33.333 10.04 0.00 45.92 2.44
6015 9695 7.325821 CGTGTGTTGCATTATAACAGACATTTT 59.674 33.333 14.01 0.00 46.56 1.82
6016 9696 6.801377 CGTGTGTTGCATTATAACAGACATTT 59.199 34.615 14.01 0.00 46.56 2.32
6017 9697 6.072728 ACGTGTGTTGCATTATAACAGACATT 60.073 34.615 14.01 0.51 46.56 2.71
6018 9698 5.411361 ACGTGTGTTGCATTATAACAGACAT 59.589 36.000 14.01 0.00 46.56 3.06
6019 9699 4.752604 ACGTGTGTTGCATTATAACAGACA 59.247 37.500 14.01 0.00 46.56 3.41
6020 9700 5.079406 CACGTGTGTTGCATTATAACAGAC 58.921 41.667 7.58 5.84 44.28 3.51
6021 9701 4.752604 ACACGTGTGTTGCATTATAACAGA 59.247 37.500 22.71 0.00 41.83 3.41
6022 9702 5.029650 ACACGTGTGTTGCATTATAACAG 57.970 39.130 22.71 0.00 41.83 3.16
6038 9718 4.201744 ACAAAACGTAAAGGAGAACACGTG 60.202 41.667 15.48 15.48 46.05 4.49
6040 9720 4.525411 ACAAAACGTAAAGGAGAACACG 57.475 40.909 0.00 0.00 40.15 4.49
6054 9734 3.059188 ACATTGGAGCGAGTAACAAAACG 60.059 43.478 0.00 0.00 0.00 3.60
6055 9735 4.219033 CACATTGGAGCGAGTAACAAAAC 58.781 43.478 0.00 0.00 0.00 2.43
6075 9757 8.762426 GGACGGATATCTCAAATAACTAAACAC 58.238 37.037 2.05 0.00 0.00 3.32
6090 9773 3.850752 ACAGAATGGAGGACGGATATCT 58.149 45.455 2.05 0.00 43.62 1.98
6117 9800 4.402056 AAACACGGAAGAGTTCAGAAGA 57.598 40.909 0.00 0.00 44.08 2.87
6387 10336 8.246180 CCTTATATTGTGAAAGTTCTGCATGTT 58.754 33.333 0.00 0.00 0.00 2.71
6388 10337 7.611467 TCCTTATATTGTGAAAGTTCTGCATGT 59.389 33.333 0.00 0.00 0.00 3.21
6493 10446 6.610075 AGTGTCAATTAATGGCAGGAAATT 57.390 33.333 0.00 0.00 46.22 1.82
6494 10447 6.183360 CGTAGTGTCAATTAATGGCAGGAAAT 60.183 38.462 0.00 0.00 46.22 2.17
6553 10507 6.417044 GGATGCTGAAATTCGATTCATCTTTG 59.583 38.462 2.08 0.00 38.55 2.77
6579 10533 8.118976 AGTACTTGCTATATGGCGTATAAGAA 57.881 34.615 13.53 6.05 34.52 2.52
6593 10547 8.569641 GTTCTGTATGCTACTAGTACTTGCTAT 58.430 37.037 0.00 7.86 0.00 2.97
6596 10550 5.681982 CGTTCTGTATGCTACTAGTACTTGC 59.318 44.000 0.00 2.02 0.00 4.01
6597 10551 6.037940 TCCGTTCTGTATGCTACTAGTACTTG 59.962 42.308 0.00 0.59 0.00 3.16
6598 10552 6.118170 TCCGTTCTGTATGCTACTAGTACTT 58.882 40.000 0.00 0.00 0.00 2.24
6599 10553 5.678583 TCCGTTCTGTATGCTACTAGTACT 58.321 41.667 0.00 0.00 0.00 2.73
6600 10554 5.998454 TCCGTTCTGTATGCTACTAGTAC 57.002 43.478 0.00 0.00 0.00 2.73
6601 10555 6.514541 GCAATCCGTTCTGTATGCTACTAGTA 60.515 42.308 1.89 1.89 0.00 1.82
6602 10556 5.736492 GCAATCCGTTCTGTATGCTACTAGT 60.736 44.000 0.00 0.00 0.00 2.57
6604 10558 4.098807 TGCAATCCGTTCTGTATGCTACTA 59.901 41.667 0.00 0.00 34.97 1.82
6624 10757 2.759191 CAAGACAGCAAGAGTACTGCA 58.241 47.619 0.00 0.00 37.42 4.41
6664 10801 2.232756 TGAAGACTAGCGTTGCAACA 57.767 45.000 28.01 9.07 0.00 3.33
6673 10810 4.679373 TCCCAGAATCATGAAGACTAGC 57.321 45.455 0.00 0.00 0.00 3.42
6674 10811 6.232581 AGTTCCCAGAATCATGAAGACTAG 57.767 41.667 0.00 0.00 0.00 2.57
6686 10823 4.660771 CAGATAACCCCTAGTTCCCAGAAT 59.339 45.833 0.00 0.00 40.05 2.40
6697 10834 5.030147 ACACAGTTCATCAGATAACCCCTA 58.970 41.667 0.00 0.00 0.00 3.53
6732 10870 8.515414 GTTCAAGGATTTGCAGTTTAGATAACT 58.485 33.333 0.00 0.00 34.21 2.24
6739 10877 4.892934 ACTGGTTCAAGGATTTGCAGTTTA 59.107 37.500 0.00 0.00 33.91 2.01
6876 12440 4.172505 CTCATTAGCATAGATGAGCGTCC 58.827 47.826 0.95 0.00 41.78 4.79
6891 12455 4.507710 TCTTACCTTGTGCTGCTCATTAG 58.492 43.478 5.13 1.17 0.00 1.73
6892 12456 4.507710 CTCTTACCTTGTGCTGCTCATTA 58.492 43.478 5.13 0.00 0.00 1.90
6893 12457 3.341823 CTCTTACCTTGTGCTGCTCATT 58.658 45.455 5.13 0.00 0.00 2.57
6960 12524 8.486210 GCCATGGGAAGTGTATCTATATATGAA 58.514 37.037 15.13 0.00 0.00 2.57
6962 12526 8.027524 AGCCATGGGAAGTGTATCTATATATG 57.972 38.462 15.13 0.00 0.00 1.78
6963 12527 8.629821 AAGCCATGGGAAGTGTATCTATATAT 57.370 34.615 15.13 0.00 0.00 0.86
7002 12567 1.937108 GCTTGACCAGAGTTGAGACCG 60.937 57.143 0.00 0.00 0.00 4.79
7134 12848 6.102321 AGGAGTCTGGTCATAAATGGAATCAT 59.898 38.462 0.00 0.00 34.56 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.