Multiple sequence alignment - TraesCS7B01G054200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G054200 chr7B 100.000 3320 0 0 1 3320 57455723 57459042 0.000000e+00 6131.0
1 TraesCS7B01G054200 chr7B 96.386 83 3 0 815 897 57456456 57456538 1.610000e-28 137.0
2 TraesCS7B01G054200 chr7B 93.478 46 2 1 855 899 743884690 743884735 2.140000e-07 67.6
3 TraesCS7B01G054200 chr7D 95.941 2365 91 4 957 3320 101036124 101038484 0.000000e+00 3831.0
4 TraesCS7B01G054200 chr7A 93.531 2365 117 20 978 3320 103140566 103142916 0.000000e+00 3487.0
5 TraesCS7B01G054200 chr1A 73.730 807 153 41 25 815 120013228 120013991 9.140000e-66 261.0
6 TraesCS7B01G054200 chr5A 75.124 607 113 30 239 816 320936814 320937411 1.980000e-62 250.0
7 TraesCS7B01G054200 chr2D 80.175 343 53 14 486 816 649368543 649368204 3.310000e-60 243.0
8 TraesCS7B01G054200 chr2D 78.535 396 63 16 439 816 552532440 552532831 1.190000e-59 241.0
9 TraesCS7B01G054200 chr2D 75.781 512 84 26 336 815 489573693 489573190 4.310000e-54 222.0
10 TraesCS7B01G054200 chr2D 81.347 193 32 4 239 429 14968171 14968361 1.600000e-33 154.0
11 TraesCS7B01G054200 chr6D 80.059 341 55 11 485 814 404334785 404335123 1.190000e-59 241.0
12 TraesCS7B01G054200 chr3D 79.942 344 54 11 486 815 44963435 44963093 4.280000e-59 239.0
13 TraesCS7B01G054200 chr3D 74.426 305 59 14 241 536 550686512 550686806 2.710000e-21 113.0
14 TraesCS7B01G054200 chr3D 97.222 36 0 1 138 172 551902 551937 3.580000e-05 60.2
15 TraesCS7B01G054200 chr6A 77.074 458 70 26 384 816 317149596 317150043 7.160000e-57 231.0
16 TraesCS7B01G054200 chr6A 83.178 107 13 4 815 916 49073860 49073754 3.530000e-15 93.5
17 TraesCS7B01G054200 chr3A 79.710 345 49 17 486 816 41552092 41551755 2.580000e-56 230.0
18 TraesCS7B01G054200 chr3A 75.829 211 39 6 338 537 113255208 113254999 2.730000e-16 97.1
19 TraesCS7B01G054200 chr2A 78.036 387 63 20 439 814 183904724 183904349 1.200000e-54 224.0
20 TraesCS7B01G054200 chr1D 75.785 446 87 14 210 641 479347408 479346970 4.340000e-49 206.0
21 TraesCS7B01G054200 chr3B 74.730 463 97 11 353 798 631966538 631966997 4.370000e-44 189.0
22 TraesCS7B01G054200 chr5D 78.738 301 47 12 350 635 116070836 116071134 5.660000e-43 185.0
23 TraesCS7B01G054200 chr5D 74.105 475 86 20 153 607 116070839 116071296 9.530000e-36 161.0
24 TraesCS7B01G054200 chr5B 74.643 280 50 7 353 632 65197206 65197464 1.630000e-18 104.0
25 TraesCS7B01G054200 chr6B 74.206 252 54 11 287 530 572095137 572094889 9.810000e-16 95.3
26 TraesCS7B01G054200 chr4A 84.286 70 8 3 820 888 684524565 684524498 7.690000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G054200 chr7B 57455723 57459042 3319 False 3134 6131 98.193 1 3320 2 chr7B.!!$F2 3319
1 TraesCS7B01G054200 chr7D 101036124 101038484 2360 False 3831 3831 95.941 957 3320 1 chr7D.!!$F1 2363
2 TraesCS7B01G054200 chr7A 103140566 103142916 2350 False 3487 3487 93.531 978 3320 1 chr7A.!!$F1 2342
3 TraesCS7B01G054200 chr1A 120013228 120013991 763 False 261 261 73.730 25 815 1 chr1A.!!$F1 790
4 TraesCS7B01G054200 chr5A 320936814 320937411 597 False 250 250 75.124 239 816 1 chr5A.!!$F1 577
5 TraesCS7B01G054200 chr2D 489573190 489573693 503 True 222 222 75.781 336 815 1 chr2D.!!$R1 479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
386 410 0.106335 CTTCTCATGGAGGCGCTGAT 59.894 55.0 7.64 0.0 0.00 2.90 F
459 671 0.249699 TTTTTCGCGAGAGGTGCAGA 60.250 50.0 9.59 0.0 43.69 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1924 2181 0.386476 TTGCCAGCAAACAGAAGCAG 59.614 50.0 1.81 0.0 32.44 4.24 R
2450 2859 1.737838 TTGCGGTCATTCATCTCACC 58.262 50.0 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.849942 GGCCATGCCTTTTGAAAAAGT 58.150 42.857 13.09 0.00 46.69 2.66
63 64 1.241165 TTCCTTCTACGAGACGCACA 58.759 50.000 0.00 0.00 0.00 4.57
65 66 1.816835 TCCTTCTACGAGACGCACAAT 59.183 47.619 0.00 0.00 0.00 2.71
69 70 4.910456 CCTTCTACGAGACGCACAATATAC 59.090 45.833 0.00 0.00 0.00 1.47
70 71 5.277876 CCTTCTACGAGACGCACAATATACT 60.278 44.000 0.00 0.00 0.00 2.12
72 73 5.745514 TCTACGAGACGCACAATATACTTC 58.254 41.667 0.00 0.00 0.00 3.01
73 74 4.634184 ACGAGACGCACAATATACTTCT 57.366 40.909 0.00 0.00 0.00 2.85
74 75 4.599047 ACGAGACGCACAATATACTTCTC 58.401 43.478 0.00 0.00 0.00 2.87
75 76 4.095932 ACGAGACGCACAATATACTTCTCA 59.904 41.667 0.00 0.00 30.41 3.27
77 78 4.938080 AGACGCACAATATACTTCTCAGG 58.062 43.478 0.00 0.00 0.00 3.86
79 80 3.704566 ACGCACAATATACTTCTCAGGGA 59.295 43.478 0.00 0.00 0.00 4.20
80 81 4.202161 ACGCACAATATACTTCTCAGGGAG 60.202 45.833 0.00 0.00 0.00 4.30
81 82 4.636249 GCACAATATACTTCTCAGGGAGG 58.364 47.826 0.00 0.00 0.00 4.30
82 83 4.636249 CACAATATACTTCTCAGGGAGGC 58.364 47.826 0.00 0.00 0.00 4.70
83 84 4.101585 CACAATATACTTCTCAGGGAGGCA 59.898 45.833 0.00 0.00 0.00 4.75
84 85 4.101741 ACAATATACTTCTCAGGGAGGCAC 59.898 45.833 0.00 0.00 0.00 5.01
85 86 2.254152 ATACTTCTCAGGGAGGCACA 57.746 50.000 0.00 0.00 0.00 4.57
86 87 2.024176 TACTTCTCAGGGAGGCACAA 57.976 50.000 0.00 0.00 0.00 3.33
87 88 1.140312 ACTTCTCAGGGAGGCACAAA 58.860 50.000 0.00 0.00 0.00 2.83
88 89 1.707427 ACTTCTCAGGGAGGCACAAAT 59.293 47.619 0.00 0.00 0.00 2.32
89 90 2.108952 ACTTCTCAGGGAGGCACAAATT 59.891 45.455 0.00 0.00 0.00 1.82
90 91 2.978156 TCTCAGGGAGGCACAAATTT 57.022 45.000 0.00 0.00 0.00 1.82
91 92 2.517959 TCTCAGGGAGGCACAAATTTG 58.482 47.619 16.67 16.67 0.00 2.32
92 93 2.158475 TCTCAGGGAGGCACAAATTTGT 60.158 45.455 18.13 18.13 43.36 2.83
93 94 2.629617 CTCAGGGAGGCACAAATTTGTT 59.370 45.455 21.10 7.41 39.91 2.83
94 95 3.037549 TCAGGGAGGCACAAATTTGTTT 58.962 40.909 21.10 9.93 39.91 2.83
95 96 3.454082 TCAGGGAGGCACAAATTTGTTTT 59.546 39.130 21.10 9.58 39.91 2.43
96 97 3.809279 CAGGGAGGCACAAATTTGTTTTC 59.191 43.478 21.10 16.77 39.91 2.29
97 98 3.711190 AGGGAGGCACAAATTTGTTTTCT 59.289 39.130 21.10 16.96 39.91 2.52
98 99 4.058124 GGGAGGCACAAATTTGTTTTCTC 58.942 43.478 21.10 22.64 39.91 2.87
99 100 3.735746 GGAGGCACAAATTTGTTTTCTCG 59.264 43.478 21.10 10.04 39.91 4.04
100 101 4.499019 GGAGGCACAAATTTGTTTTCTCGA 60.499 41.667 21.10 0.00 39.91 4.04
101 102 4.610945 AGGCACAAATTTGTTTTCTCGAG 58.389 39.130 21.10 5.93 39.91 4.04
102 103 4.338118 AGGCACAAATTTGTTTTCTCGAGA 59.662 37.500 21.10 12.08 39.91 4.04
103 104 4.676924 GGCACAAATTTGTTTTCTCGAGAG 59.323 41.667 21.10 7.27 39.91 3.20
104 105 4.676924 GCACAAATTTGTTTTCTCGAGAGG 59.323 41.667 21.10 6.78 39.91 3.69
105 106 4.676924 CACAAATTTGTTTTCTCGAGAGGC 59.323 41.667 21.10 10.19 39.91 4.70
106 107 4.338118 ACAAATTTGTTTTCTCGAGAGGCA 59.662 37.500 18.13 12.61 38.47 4.75
107 108 5.010012 ACAAATTTGTTTTCTCGAGAGGCAT 59.990 36.000 18.13 0.96 38.47 4.40
108 109 4.691860 ATTTGTTTTCTCGAGAGGCATG 57.308 40.909 15.94 0.00 0.00 4.06
109 110 2.099141 TGTTTTCTCGAGAGGCATGG 57.901 50.000 15.94 0.00 0.00 3.66
110 111 1.347707 TGTTTTCTCGAGAGGCATGGT 59.652 47.619 15.94 0.00 0.00 3.55
111 112 2.003301 GTTTTCTCGAGAGGCATGGTC 58.997 52.381 15.94 0.00 0.00 4.02
112 113 1.561643 TTTCTCGAGAGGCATGGTCT 58.438 50.000 15.94 0.00 0.00 3.85
113 114 1.561643 TTCTCGAGAGGCATGGTCTT 58.438 50.000 15.94 0.00 0.00 3.01
114 115 0.820226 TCTCGAGAGGCATGGTCTTG 59.180 55.000 12.08 0.00 0.00 3.02
115 116 0.809241 CTCGAGAGGCATGGTCTTGC 60.809 60.000 6.58 0.85 42.01 4.01
116 117 1.078918 CGAGAGGCATGGTCTTGCA 60.079 57.895 10.29 0.00 44.59 4.08
117 118 0.463295 CGAGAGGCATGGTCTTGCAT 60.463 55.000 10.29 3.78 44.59 3.96
119 120 3.491208 GAGGCATGGTCTTGCATCT 57.509 52.632 13.64 2.89 46.81 2.90
120 121 1.307097 GAGGCATGGTCTTGCATCTC 58.693 55.000 13.64 7.45 46.81 2.75
121 122 0.917533 AGGCATGGTCTTGCATCTCT 59.082 50.000 10.29 0.00 44.59 3.10
122 123 1.022735 GGCATGGTCTTGCATCTCTG 58.977 55.000 10.29 0.00 44.59 3.35
123 124 1.407851 GGCATGGTCTTGCATCTCTGA 60.408 52.381 10.29 0.00 44.59 3.27
124 125 2.362736 GCATGGTCTTGCATCTCTGAA 58.637 47.619 0.00 0.00 42.31 3.02
125 126 2.751259 GCATGGTCTTGCATCTCTGAAA 59.249 45.455 0.00 0.00 42.31 2.69
126 127 3.192001 GCATGGTCTTGCATCTCTGAAAA 59.808 43.478 0.00 0.00 42.31 2.29
127 128 4.674623 GCATGGTCTTGCATCTCTGAAAAG 60.675 45.833 0.00 0.00 42.31 2.27
128 129 3.415212 TGGTCTTGCATCTCTGAAAAGG 58.585 45.455 0.00 0.00 0.00 3.11
129 130 3.072915 TGGTCTTGCATCTCTGAAAAGGA 59.927 43.478 0.00 0.00 0.00 3.36
130 131 4.074970 GGTCTTGCATCTCTGAAAAGGAA 58.925 43.478 0.00 0.00 0.00 3.36
131 132 4.520492 GGTCTTGCATCTCTGAAAAGGAAA 59.480 41.667 0.00 0.00 0.00 3.13
132 133 5.010012 GGTCTTGCATCTCTGAAAAGGAAAA 59.990 40.000 0.00 0.00 0.00 2.29
133 134 5.917447 GTCTTGCATCTCTGAAAAGGAAAAC 59.083 40.000 0.00 0.00 0.00 2.43
134 135 5.593909 TCTTGCATCTCTGAAAAGGAAAACA 59.406 36.000 0.00 0.00 0.00 2.83
135 136 5.850557 TGCATCTCTGAAAAGGAAAACAA 57.149 34.783 0.00 0.00 0.00 2.83
136 137 6.409524 TGCATCTCTGAAAAGGAAAACAAT 57.590 33.333 0.00 0.00 0.00 2.71
137 138 6.819284 TGCATCTCTGAAAAGGAAAACAATT 58.181 32.000 0.00 0.00 0.00 2.32
138 139 7.274447 TGCATCTCTGAAAAGGAAAACAATTT 58.726 30.769 0.00 0.00 0.00 1.82
139 140 7.769970 TGCATCTCTGAAAAGGAAAACAATTTT 59.230 29.630 0.00 0.00 35.12 1.82
140 141 8.615211 GCATCTCTGAAAAGGAAAACAATTTTT 58.385 29.630 0.00 0.00 37.65 1.94
171 172 5.126396 GCAAGAGGCACAAATTTACTTCT 57.874 39.130 0.00 0.00 43.97 2.85
172 173 5.532557 GCAAGAGGCACAAATTTACTTCTT 58.467 37.500 6.59 6.59 43.97 2.52
173 174 5.403466 GCAAGAGGCACAAATTTACTTCTTG 59.597 40.000 22.35 22.35 43.97 3.02
174 175 6.735694 GCAAGAGGCACAAATTTACTTCTTGA 60.736 38.462 26.64 0.00 43.97 3.02
175 176 6.959639 AGAGGCACAAATTTACTTCTTGAA 57.040 33.333 0.00 0.00 0.00 2.69
176 177 6.974965 AGAGGCACAAATTTACTTCTTGAAG 58.025 36.000 8.65 8.65 0.00 3.02
177 178 6.772716 AGAGGCACAAATTTACTTCTTGAAGA 59.227 34.615 16.21 0.00 0.00 2.87
178 179 7.449704 AGAGGCACAAATTTACTTCTTGAAGAT 59.550 33.333 16.21 4.54 0.00 2.40
179 180 7.373493 AGGCACAAATTTACTTCTTGAAGATG 58.627 34.615 16.21 6.55 0.00 2.90
180 181 7.014615 AGGCACAAATTTACTTCTTGAAGATGT 59.985 33.333 16.43 16.43 36.67 3.06
181 182 8.296713 GGCACAAATTTACTTCTTGAAGATGTA 58.703 33.333 14.64 14.64 34.84 2.29
182 183 9.118236 GCACAAATTTACTTCTTGAAGATGTAC 57.882 33.333 17.34 3.88 35.45 2.90
183 184 9.318041 CACAAATTTACTTCTTGAAGATGTACG 57.682 33.333 17.34 8.78 35.45 3.67
184 185 8.504005 ACAAATTTACTTCTTGAAGATGTACGG 58.496 33.333 17.34 9.75 35.45 4.02
185 186 8.717821 CAAATTTACTTCTTGAAGATGTACGGA 58.282 33.333 17.34 9.36 35.45 4.69
186 187 9.449719 AAATTTACTTCTTGAAGATGTACGGAT 57.550 29.630 17.34 10.78 35.45 4.18
187 188 9.449719 AATTTACTTCTTGAAGATGTACGGATT 57.550 29.630 17.34 14.56 35.45 3.01
188 189 8.842358 TTTACTTCTTGAAGATGTACGGATTT 57.158 30.769 17.34 0.00 35.45 2.17
189 190 6.727824 ACTTCTTGAAGATGTACGGATTTG 57.272 37.500 16.21 0.00 31.76 2.32
190 191 5.122396 ACTTCTTGAAGATGTACGGATTTGC 59.878 40.000 16.21 0.00 31.76 3.68
191 192 4.832248 TCTTGAAGATGTACGGATTTGCT 58.168 39.130 0.00 0.00 0.00 3.91
192 193 5.245531 TCTTGAAGATGTACGGATTTGCTT 58.754 37.500 0.00 0.00 0.00 3.91
193 194 5.351465 TCTTGAAGATGTACGGATTTGCTTC 59.649 40.000 0.00 0.00 0.00 3.86
194 195 4.832248 TGAAGATGTACGGATTTGCTTCT 58.168 39.130 0.00 0.00 33.38 2.85
195 196 5.972935 TGAAGATGTACGGATTTGCTTCTA 58.027 37.500 0.00 0.00 33.38 2.10
196 197 5.810587 TGAAGATGTACGGATTTGCTTCTAC 59.189 40.000 0.00 0.00 33.38 2.59
197 198 5.339008 AGATGTACGGATTTGCTTCTACA 57.661 39.130 0.00 0.00 0.00 2.74
198 199 5.918608 AGATGTACGGATTTGCTTCTACAT 58.081 37.500 0.00 0.00 0.00 2.29
199 200 5.755375 AGATGTACGGATTTGCTTCTACATG 59.245 40.000 0.00 0.00 0.00 3.21
200 201 3.621268 TGTACGGATTTGCTTCTACATGC 59.379 43.478 0.00 0.00 0.00 4.06
201 202 1.665679 ACGGATTTGCTTCTACATGCG 59.334 47.619 0.00 0.00 36.63 4.73
202 203 1.003545 CGGATTTGCTTCTACATGCGG 60.004 52.381 0.00 0.00 0.00 5.69
203 204 1.268743 GGATTTGCTTCTACATGCGGC 60.269 52.381 0.00 0.00 0.00 6.53
204 205 1.401552 GATTTGCTTCTACATGCGGCA 59.598 47.619 4.58 4.58 0.00 5.69
205 206 0.521291 TTTGCTTCTACATGCGGCAC 59.479 50.000 4.03 0.00 32.47 5.01
220 221 2.505777 CACGCTCGTGCCTCTCAG 60.506 66.667 9.55 0.00 39.39 3.35
221 222 2.673341 ACGCTCGTGCCTCTCAGA 60.673 61.111 3.52 0.00 35.36 3.27
222 223 2.268802 ACGCTCGTGCCTCTCAGAA 61.269 57.895 3.52 0.00 35.36 3.02
223 224 1.080501 CGCTCGTGCCTCTCAGAAA 60.081 57.895 3.52 0.00 35.36 2.52
224 225 1.075425 CGCTCGTGCCTCTCAGAAAG 61.075 60.000 3.52 0.00 35.36 2.62
225 226 0.244994 GCTCGTGCCTCTCAGAAAGA 59.755 55.000 0.00 0.00 0.00 2.52
235 236 4.981389 CTCTCAGAAAGAGGAAAACGTG 57.019 45.455 0.00 0.00 46.73 4.49
236 237 3.131396 TCTCAGAAAGAGGAAAACGTGC 58.869 45.455 0.00 0.00 44.81 5.34
237 238 1.864711 TCAGAAAGAGGAAAACGTGCG 59.135 47.619 0.00 0.00 0.00 5.34
238 239 1.597663 CAGAAAGAGGAAAACGTGCGT 59.402 47.619 0.00 0.00 0.00 5.24
239 240 2.031683 CAGAAAGAGGAAAACGTGCGTT 59.968 45.455 3.97 3.97 40.45 4.84
240 241 7.422576 CTCAGAAAGAGGAAAACGTGCGTTT 62.423 44.000 15.73 15.73 43.74 3.60
241 242 8.792623 CTCAGAAAGAGGAAAACGTGCGTTTT 62.793 42.308 28.01 28.01 45.75 2.43
260 261 3.507162 TTTTCTTCCATGAGAGGCACA 57.493 42.857 0.00 0.00 0.00 4.57
261 262 2.479566 TTCTTCCATGAGAGGCACAC 57.520 50.000 0.00 0.00 0.00 3.82
262 263 1.351076 TCTTCCATGAGAGGCACACA 58.649 50.000 0.00 0.00 0.00 3.72
263 264 1.911357 TCTTCCATGAGAGGCACACAT 59.089 47.619 0.00 0.00 0.00 3.21
264 265 2.306805 TCTTCCATGAGAGGCACACATT 59.693 45.455 0.00 0.00 0.00 2.71
265 266 2.885135 TCCATGAGAGGCACACATTT 57.115 45.000 0.00 0.00 0.00 2.32
266 267 3.998913 TCCATGAGAGGCACACATTTA 57.001 42.857 0.00 0.00 0.00 1.40
267 268 3.609853 TCCATGAGAGGCACACATTTAC 58.390 45.455 0.00 0.00 0.00 2.01
268 269 3.264193 TCCATGAGAGGCACACATTTACT 59.736 43.478 0.00 0.00 0.00 2.24
269 270 4.012374 CCATGAGAGGCACACATTTACTT 58.988 43.478 0.00 0.00 0.00 2.24
270 271 4.095483 CCATGAGAGGCACACATTTACTTC 59.905 45.833 0.00 0.00 0.00 3.01
271 272 4.623932 TGAGAGGCACACATTTACTTCT 57.376 40.909 0.00 0.00 0.00 2.85
272 273 4.569943 TGAGAGGCACACATTTACTTCTC 58.430 43.478 0.00 0.00 0.00 2.87
273 274 3.589988 AGAGGCACACATTTACTTCTCG 58.410 45.455 0.00 0.00 0.00 4.04
274 275 3.006967 AGAGGCACACATTTACTTCTCGT 59.993 43.478 0.00 0.00 0.00 4.18
275 276 3.067106 AGGCACACATTTACTTCTCGTG 58.933 45.455 0.00 0.00 0.00 4.35
276 277 3.064207 GGCACACATTTACTTCTCGTGA 58.936 45.455 0.00 0.00 0.00 4.35
277 278 3.496884 GGCACACATTTACTTCTCGTGAA 59.503 43.478 0.00 0.00 0.00 3.18
285 286 3.894257 CTTCTCGTGAAGGCACTGA 57.106 52.632 17.47 0.00 44.33 3.41
286 287 2.376808 CTTCTCGTGAAGGCACTGAT 57.623 50.000 17.47 0.00 44.33 2.90
287 288 2.693069 CTTCTCGTGAAGGCACTGATT 58.307 47.619 17.47 0.00 44.33 2.57
288 289 2.839486 TCTCGTGAAGGCACTGATTT 57.161 45.000 0.00 0.00 42.93 2.17
289 290 3.126001 TCTCGTGAAGGCACTGATTTT 57.874 42.857 0.00 0.00 42.93 1.82
290 291 3.067106 TCTCGTGAAGGCACTGATTTTC 58.933 45.455 0.00 0.00 42.93 2.29
291 292 3.070018 CTCGTGAAGGCACTGATTTTCT 58.930 45.455 0.00 0.00 42.93 2.52
292 293 3.476552 TCGTGAAGGCACTGATTTTCTT 58.523 40.909 0.00 0.00 42.93 2.52
293 294 3.498397 TCGTGAAGGCACTGATTTTCTTC 59.502 43.478 0.00 0.00 42.93 2.87
294 295 3.365364 CGTGAAGGCACTGATTTTCTTCC 60.365 47.826 0.00 0.00 42.93 3.46
295 296 3.057245 GTGAAGGCACTGATTTTCTTCCC 60.057 47.826 0.00 0.00 40.86 3.97
296 297 2.222227 AGGCACTGATTTTCTTCCCC 57.778 50.000 0.00 0.00 37.18 4.81
297 298 0.811281 GGCACTGATTTTCTTCCCCG 59.189 55.000 0.00 0.00 0.00 5.73
298 299 1.534729 GCACTGATTTTCTTCCCCGT 58.465 50.000 0.00 0.00 0.00 5.28
299 300 1.200020 GCACTGATTTTCTTCCCCGTG 59.800 52.381 0.00 0.00 0.00 4.94
300 301 2.778299 CACTGATTTTCTTCCCCGTGA 58.222 47.619 0.00 0.00 0.00 4.35
301 302 2.744202 CACTGATTTTCTTCCCCGTGAG 59.256 50.000 0.00 0.00 0.00 3.51
322 323 3.581024 GCATGATTGTGCCTCTCAAAA 57.419 42.857 0.00 0.00 39.18 2.44
323 324 3.916761 GCATGATTGTGCCTCTCAAAAA 58.083 40.909 0.00 0.00 39.18 1.94
324 325 3.924686 GCATGATTGTGCCTCTCAAAAAG 59.075 43.478 0.00 0.00 39.18 2.27
325 326 4.321452 GCATGATTGTGCCTCTCAAAAAGA 60.321 41.667 0.00 0.00 39.18 2.52
372 373 9.547753 TTCATAAGAGGCACATATTTACTTCTC 57.452 33.333 0.00 0.00 0.00 2.87
373 374 8.704668 TCATAAGAGGCACATATTTACTTCTCA 58.295 33.333 0.00 0.00 0.00 3.27
374 375 9.499479 CATAAGAGGCACATATTTACTTCTCAT 57.501 33.333 0.00 0.00 0.00 2.90
375 376 7.798596 AAGAGGCACATATTTACTTCTCATG 57.201 36.000 0.00 0.00 0.00 3.07
381 382 5.178252 CACATATTTACTTCTCATGGAGGCG 59.822 44.000 0.00 0.00 0.00 5.52
383 384 1.195115 TTACTTCTCATGGAGGCGCT 58.805 50.000 7.64 0.00 0.00 5.92
385 409 1.260538 ACTTCTCATGGAGGCGCTGA 61.261 55.000 7.64 0.93 0.00 4.26
386 410 0.106335 CTTCTCATGGAGGCGCTGAT 59.894 55.000 7.64 0.00 0.00 2.90
387 411 0.543277 TTCTCATGGAGGCGCTGATT 59.457 50.000 7.64 0.00 0.00 2.57
395 595 0.522076 GAGGCGCTGATTTGCTTTCG 60.522 55.000 7.64 0.00 0.00 3.46
402 602 1.061711 CTGATTTGCTTTCGCGAGAGG 59.938 52.381 25.84 13.55 43.69 3.69
405 605 1.841663 TTTGCTTTCGCGAGAGGCAC 61.842 55.000 25.84 11.56 45.26 5.01
428 628 0.941542 CGTGCCACTCGGAAAAGAAA 59.058 50.000 0.00 0.00 0.00 2.52
429 629 1.332375 CGTGCCACTCGGAAAAGAAAA 59.668 47.619 0.00 0.00 0.00 2.29
457 669 4.447544 TTTTTCGCGAGAGGTGCA 57.552 50.000 9.59 0.00 43.69 4.57
459 671 0.249699 TTTTTCGCGAGAGGTGCAGA 60.250 50.000 9.59 0.00 43.69 4.26
463 675 0.815095 TCGCGAGAGGTGCAGATTTA 59.185 50.000 3.71 0.00 34.84 1.40
468 680 3.677424 GCGAGAGGTGCAGATTTACTTCT 60.677 47.826 0.00 0.00 36.16 2.85
469 681 4.109050 CGAGAGGTGCAGATTTACTTCTC 58.891 47.826 0.00 0.00 42.94 2.87
470 682 4.380973 CGAGAGGTGCAGATTTACTTCTCA 60.381 45.833 14.16 0.00 45.17 3.27
471 683 5.669477 GAGAGGTGCAGATTTACTTCTCAT 58.331 41.667 10.42 0.00 44.63 2.90
476 688 5.465056 GGTGCAGATTTACTTCTCATAGAGC 59.535 44.000 0.00 0.00 0.00 4.09
481 693 5.361285 AGATTTACTTCTCATAGAGCCACGT 59.639 40.000 0.00 0.00 0.00 4.49
482 694 6.546403 AGATTTACTTCTCATAGAGCCACGTA 59.454 38.462 0.00 0.00 0.00 3.57
483 695 5.496133 TTACTTCTCATAGAGCCACGTAC 57.504 43.478 0.00 0.00 0.00 3.67
484 696 3.622630 ACTTCTCATAGAGCCACGTACT 58.377 45.455 0.00 0.00 0.00 2.73
493 705 0.249741 AGCCACGTACTTGCTTTCGT 60.250 50.000 0.00 0.00 36.99 3.85
499 711 1.986378 CGTACTTGCTTTCGTGAGAGG 59.014 52.381 0.00 0.00 43.69 3.69
521 733 1.446272 GGTCGTGCCTCTCGGAAAG 60.446 63.158 0.00 0.00 0.00 2.62
561 781 0.816018 TTTCTTCCGTGAAAGGCGCA 60.816 50.000 10.83 0.00 32.82 6.09
562 782 1.227999 TTCTTCCGTGAAAGGCGCAG 61.228 55.000 10.83 0.00 0.00 5.18
563 783 1.667830 CTTCCGTGAAAGGCGCAGA 60.668 57.895 10.83 0.00 0.00 4.26
564 784 1.003839 TTCCGTGAAAGGCGCAGAT 60.004 52.632 10.83 0.00 0.00 2.90
565 785 0.605319 TTCCGTGAAAGGCGCAGATT 60.605 50.000 10.83 0.00 0.00 2.40
566 786 0.605319 TCCGTGAAAGGCGCAGATTT 60.605 50.000 10.83 6.99 0.00 2.17
567 787 1.083489 CCGTGAAAGGCGCAGATTTA 58.917 50.000 10.83 0.00 0.00 1.40
568 788 1.202031 CCGTGAAAGGCGCAGATTTAC 60.202 52.381 10.83 6.81 0.00 2.01
569 789 1.732259 CGTGAAAGGCGCAGATTTACT 59.268 47.619 10.83 0.00 0.00 2.24
570 790 2.159627 CGTGAAAGGCGCAGATTTACTT 59.840 45.455 10.83 0.00 0.00 2.24
571 791 3.725010 CGTGAAAGGCGCAGATTTACTTC 60.725 47.826 10.83 0.08 0.00 3.01
572 792 3.437049 GTGAAAGGCGCAGATTTACTTCT 59.563 43.478 10.83 0.00 0.00 2.85
573 793 3.684788 TGAAAGGCGCAGATTTACTTCTC 59.315 43.478 10.83 3.23 0.00 2.87
574 794 3.334583 AAGGCGCAGATTTACTTCTCA 57.665 42.857 10.83 0.00 0.00 3.27
575 795 3.550437 AGGCGCAGATTTACTTCTCAT 57.450 42.857 10.83 0.00 0.00 2.90
576 796 3.201290 AGGCGCAGATTTACTTCTCATG 58.799 45.455 10.83 0.00 0.00 3.07
577 797 2.289002 GGCGCAGATTTACTTCTCATGG 59.711 50.000 10.83 0.00 0.00 3.66
578 798 3.198068 GCGCAGATTTACTTCTCATGGA 58.802 45.455 0.30 0.00 0.00 3.41
579 799 3.247173 GCGCAGATTTACTTCTCATGGAG 59.753 47.826 0.30 0.00 0.00 3.86
580 800 3.806521 CGCAGATTTACTTCTCATGGAGG 59.193 47.826 0.00 0.00 0.00 4.30
581 801 3.563390 GCAGATTTACTTCTCATGGAGGC 59.437 47.826 0.00 0.00 0.00 4.70
582 802 4.774124 CAGATTTACTTCTCATGGAGGCA 58.226 43.478 0.00 0.00 0.00 4.75
583 803 5.374921 CAGATTTACTTCTCATGGAGGCAT 58.625 41.667 0.00 0.00 0.00 4.40
586 806 1.588239 ACTTCTCATGGAGGCATGGA 58.412 50.000 0.00 0.00 33.61 3.41
610 830 2.820767 CTTCCACGAGAGGCACGGTC 62.821 65.000 0.00 0.00 34.93 4.79
611 831 3.680786 CCACGAGAGGCACGGTCA 61.681 66.667 0.00 0.00 34.93 4.02
614 834 2.202797 CGAGAGGCACGGTCATGG 60.203 66.667 0.00 0.00 0.00 3.66
627 872 0.537188 GTCATGGCTCTCGGAAAGGA 59.463 55.000 0.00 0.00 0.00 3.36
632 879 2.504367 TGGCTCTCGGAAAGGAAAAAG 58.496 47.619 0.00 0.00 0.00 2.27
634 881 3.146847 GGCTCTCGGAAAGGAAAAAGAA 58.853 45.455 0.00 0.00 0.00 2.52
635 882 3.759086 GGCTCTCGGAAAGGAAAAAGAAT 59.241 43.478 0.00 0.00 0.00 2.40
636 883 4.941873 GGCTCTCGGAAAGGAAAAAGAATA 59.058 41.667 0.00 0.00 0.00 1.75
639 887 6.094186 GCTCTCGGAAAGGAAAAAGAATATGT 59.906 38.462 0.00 0.00 0.00 2.29
708 959 6.260714 TCATGAAAACCTATCAACATGGATCG 59.739 38.462 0.00 0.00 36.70 3.69
726 977 3.671008 TCGAGTTTTGAAGATCCCGAA 57.329 42.857 0.00 0.00 0.00 4.30
737 988 0.676736 GATCCCGAAGCGAGGAATCT 59.323 55.000 0.00 0.00 35.30 2.40
741 992 1.136305 CCCGAAGCGAGGAATCTAACA 59.864 52.381 0.00 0.00 0.00 2.41
742 993 2.418197 CCCGAAGCGAGGAATCTAACAA 60.418 50.000 0.00 0.00 0.00 2.83
748 999 6.402118 CGAAGCGAGGAATCTAACAATGAAAA 60.402 38.462 0.00 0.00 0.00 2.29
751 1002 6.206634 AGCGAGGAATCTAACAATGAAAACAA 59.793 34.615 0.00 0.00 0.00 2.83
754 1005 8.853345 CGAGGAATCTAACAATGAAAACAATTG 58.147 33.333 3.24 3.24 40.23 2.32
755 1006 9.912634 GAGGAATCTAACAATGAAAACAATTGA 57.087 29.630 13.59 0.00 38.21 2.57
769 1020 8.890718 TGAAAACAATTGAAGATTTGAATGCAA 58.109 25.926 13.59 0.00 0.00 4.08
771 1022 8.665643 AAACAATTGAAGATTTGAATGCAAGA 57.334 26.923 13.59 0.00 35.04 3.02
772 1023 7.647907 ACAATTGAAGATTTGAATGCAAGAC 57.352 32.000 13.59 0.00 35.04 3.01
844 1095 8.870160 AACGATGAAAACAATTGAAGATTTGA 57.130 26.923 13.59 2.85 0.00 2.69
845 1096 8.870160 ACGATGAAAACAATTGAAGATTTGAA 57.130 26.923 13.59 0.00 0.00 2.69
846 1097 9.480053 ACGATGAAAACAATTGAAGATTTGAAT 57.520 25.926 13.59 0.33 0.00 2.57
847 1098 9.735646 CGATGAAAACAATTGAAGATTTGAATG 57.264 29.630 13.59 0.00 0.00 2.67
848 1099 9.537848 GATGAAAACAATTGAAGATTTGAATGC 57.462 29.630 13.59 0.00 0.00 3.56
849 1100 8.434733 TGAAAACAATTGAAGATTTGAATGCA 57.565 26.923 13.59 0.00 0.00 3.96
850 1101 8.890718 TGAAAACAATTGAAGATTTGAATGCAA 58.109 25.926 13.59 0.00 0.00 4.08
851 1102 9.377383 GAAAACAATTGAAGATTTGAATGCAAG 57.623 29.630 13.59 0.00 35.04 4.01
852 1103 8.665643 AAACAATTGAAGATTTGAATGCAAGA 57.334 26.923 13.59 0.00 35.04 3.02
853 1104 7.647907 ACAATTGAAGATTTGAATGCAAGAC 57.352 32.000 13.59 0.00 35.04 3.01
854 1105 7.439381 ACAATTGAAGATTTGAATGCAAGACT 58.561 30.769 13.59 0.00 35.04 3.24
855 1106 7.929785 ACAATTGAAGATTTGAATGCAAGACTT 59.070 29.630 13.59 6.82 35.53 3.01
856 1107 7.884816 ATTGAAGATTTGAATGCAAGACTTG 57.115 32.000 11.02 11.02 34.17 3.16
857 1108 6.638096 TGAAGATTTGAATGCAAGACTTGA 57.362 33.333 19.51 4.72 34.17 3.02
858 1109 6.675026 TGAAGATTTGAATGCAAGACTTGAG 58.325 36.000 19.51 0.00 34.17 3.02
859 1110 6.487668 TGAAGATTTGAATGCAAGACTTGAGA 59.512 34.615 19.51 4.65 34.17 3.27
860 1111 6.497785 AGATTTGAATGCAAGACTTGAGAG 57.502 37.500 19.51 0.00 35.04 3.20
861 1112 6.236409 AGATTTGAATGCAAGACTTGAGAGA 58.764 36.000 19.51 0.00 35.04 3.10
862 1113 6.885376 AGATTTGAATGCAAGACTTGAGAGAT 59.115 34.615 19.51 1.98 35.04 2.75
863 1114 8.045507 AGATTTGAATGCAAGACTTGAGAGATA 58.954 33.333 19.51 0.00 35.04 1.98
864 1115 7.984422 TTTGAATGCAAGACTTGAGAGATAA 57.016 32.000 19.51 3.69 35.04 1.75
865 1116 7.984422 TTGAATGCAAGACTTGAGAGATAAA 57.016 32.000 19.51 1.43 0.00 1.40
866 1117 7.984422 TGAATGCAAGACTTGAGAGATAAAA 57.016 32.000 19.51 0.00 0.00 1.52
867 1118 8.571461 TGAATGCAAGACTTGAGAGATAAAAT 57.429 30.769 19.51 0.00 0.00 1.82
868 1119 8.456471 TGAATGCAAGACTTGAGAGATAAAATG 58.544 33.333 19.51 0.00 0.00 2.32
869 1120 6.748333 TGCAAGACTTGAGAGATAAAATGG 57.252 37.500 19.51 0.00 0.00 3.16
870 1121 6.240894 TGCAAGACTTGAGAGATAAAATGGT 58.759 36.000 19.51 0.00 0.00 3.55
871 1122 6.716628 TGCAAGACTTGAGAGATAAAATGGTT 59.283 34.615 19.51 0.00 0.00 3.67
872 1123 7.231317 TGCAAGACTTGAGAGATAAAATGGTTT 59.769 33.333 19.51 0.00 0.00 3.27
873 1124 7.540055 GCAAGACTTGAGAGATAAAATGGTTTG 59.460 37.037 19.51 0.00 0.00 2.93
874 1125 8.786898 CAAGACTTGAGAGATAAAATGGTTTGA 58.213 33.333 9.76 0.00 0.00 2.69
875 1126 8.924511 AGACTTGAGAGATAAAATGGTTTGAA 57.075 30.769 0.00 0.00 0.00 2.69
876 1127 9.525826 AGACTTGAGAGATAAAATGGTTTGAAT 57.474 29.630 0.00 0.00 0.00 2.57
918 1169 7.745620 AAAAATCTCAGGTTACGACAAGAAT 57.254 32.000 0.00 0.00 0.00 2.40
919 1170 8.842358 AAAAATCTCAGGTTACGACAAGAATA 57.158 30.769 0.00 0.00 0.00 1.75
920 1171 7.829378 AAATCTCAGGTTACGACAAGAATAC 57.171 36.000 0.00 0.00 0.00 1.89
921 1172 5.970317 TCTCAGGTTACGACAAGAATACA 57.030 39.130 0.00 0.00 0.00 2.29
922 1173 5.706916 TCTCAGGTTACGACAAGAATACAC 58.293 41.667 0.00 0.00 0.00 2.90
923 1174 5.242171 TCTCAGGTTACGACAAGAATACACA 59.758 40.000 0.00 0.00 0.00 3.72
924 1175 5.224888 TCAGGTTACGACAAGAATACACAC 58.775 41.667 0.00 0.00 0.00 3.82
925 1176 4.986034 CAGGTTACGACAAGAATACACACA 59.014 41.667 0.00 0.00 0.00 3.72
926 1177 5.637810 CAGGTTACGACAAGAATACACACAT 59.362 40.000 0.00 0.00 0.00 3.21
927 1178 6.809689 CAGGTTACGACAAGAATACACACATA 59.190 38.462 0.00 0.00 0.00 2.29
928 1179 6.810182 AGGTTACGACAAGAATACACACATAC 59.190 38.462 0.00 0.00 0.00 2.39
929 1180 6.237384 GGTTACGACAAGAATACACACATACG 60.237 42.308 0.00 0.00 0.00 3.06
930 1181 4.171005 ACGACAAGAATACACACATACGG 58.829 43.478 0.00 0.00 0.00 4.02
931 1182 4.171005 CGACAAGAATACACACATACGGT 58.829 43.478 0.00 0.00 0.00 4.83
943 1194 2.091541 ACATACGGTGAGGCAAATTGG 58.908 47.619 0.00 0.00 0.00 3.16
944 1195 1.405105 CATACGGTGAGGCAAATTGGG 59.595 52.381 0.00 0.00 0.00 4.12
945 1196 0.963355 TACGGTGAGGCAAATTGGGC 60.963 55.000 0.00 0.00 0.00 5.36
954 1205 2.078849 GCAAATTGGGCCTTGTACAC 57.921 50.000 4.53 0.00 0.00 2.90
955 1206 1.337728 GCAAATTGGGCCTTGTACACC 60.338 52.381 4.53 0.00 0.00 4.16
965 1216 0.974383 CTTGTACACCCTTCCGAGGT 59.026 55.000 0.00 0.00 41.85 3.85
967 1218 1.843368 TGTACACCCTTCCGAGGTAG 58.157 55.000 0.00 0.00 41.85 3.18
968 1219 1.076024 TGTACACCCTTCCGAGGTAGT 59.924 52.381 0.00 0.00 41.85 2.73
969 1220 2.308570 TGTACACCCTTCCGAGGTAGTA 59.691 50.000 0.00 0.00 41.85 1.82
970 1221 2.140839 ACACCCTTCCGAGGTAGTAG 57.859 55.000 0.00 0.00 41.85 2.57
1056 1307 2.651361 CACTCCGTCGAGCACCTT 59.349 61.111 0.00 0.00 40.03 3.50
1578 1835 2.728383 GTGGTGTCGTGGACGTCG 60.728 66.667 9.92 0.00 40.80 5.12
1612 1869 1.817099 CTGCAGAATGGTCTCGCCC 60.817 63.158 8.42 0.00 35.86 6.13
1708 1965 3.057548 CGGCTTGCACCATGCTCA 61.058 61.111 2.02 0.00 45.31 4.26
1758 2015 2.108075 TGGGTCAGTGATCAAACATGGT 59.892 45.455 5.60 0.00 0.00 3.55
1924 2181 0.615331 TGGGAGTCCTCTTGATGCAC 59.385 55.000 9.58 0.00 0.00 4.57
1935 2192 3.216800 TCTTGATGCACTGCTTCTGTTT 58.783 40.909 15.75 0.00 34.46 2.83
1974 2231 2.791158 GCGCATTGTTCCTAATTCGGTG 60.791 50.000 0.30 0.00 29.49 4.94
2094 2503 0.736636 ATGTGGTGATGAATGCGCTG 59.263 50.000 9.73 0.00 0.00 5.18
2097 2506 0.251634 TGGTGATGAATGCGCTGGTA 59.748 50.000 9.73 0.00 0.00 3.25
2190 2599 6.995364 TGTTGTCACATGGAATTCATTGATT 58.005 32.000 7.93 0.00 32.92 2.57
2311 2720 1.750778 CCTTGTCAGCCTGTGTTTGTT 59.249 47.619 0.00 0.00 0.00 2.83
2349 2758 9.457436 ACTTATCGGTAAATGTTTCCATACTTT 57.543 29.630 0.00 0.00 0.00 2.66
2360 2769 6.815089 TGTTTCCATACTTTTGCTGTCAAAT 58.185 32.000 0.00 0.00 41.37 2.32
2450 2859 0.534412 ATCTGCTCAGAGGGTGTTCG 59.466 55.000 5.76 0.00 41.33 3.95
2584 2993 8.281212 ACAATATCCAACCAAATGAAGTAGTC 57.719 34.615 0.00 0.00 0.00 2.59
2627 3036 2.198827 CAGCCACACTGGAATGGTTA 57.801 50.000 0.00 0.00 40.96 2.85
2647 3056 6.764560 TGGTTACTGTAGGAAAGAAGTGTTTC 59.235 38.462 0.00 0.00 35.95 2.78
2660 3069 0.874390 GTGTTTCGAGAGCATGGCAA 59.126 50.000 0.00 0.00 0.00 4.52
2683 3092 7.308830 GCAAAGTATTTCAACATCACTCCTTCT 60.309 37.037 0.00 0.00 35.03 2.85
2717 3126 2.223641 GCATGTATGGTTGATGTGCTGG 60.224 50.000 0.00 0.00 0.00 4.85
2935 3344 2.125178 CTCATACGGGAGGTGGGAC 58.875 63.158 0.00 0.00 0.00 4.46
2941 3350 2.214216 CGGGAGGTGGGACAAGTCA 61.214 63.158 2.29 0.00 44.16 3.41
2942 3351 1.764571 CGGGAGGTGGGACAAGTCAA 61.765 60.000 2.29 0.00 44.16 3.18
3026 3435 6.043012 TGTGGGACTTGAAAATGGATGAATTT 59.957 34.615 0.00 0.00 0.00 1.82
3032 3441 8.767478 ACTTGAAAATGGATGAATTTGATGTC 57.233 30.769 0.00 0.00 30.21 3.06
3090 3510 5.163120 ACCTGATCGGTCCATAGAGTTACTA 60.163 44.000 0.00 0.00 44.93 1.82
3144 3564 6.267699 TCCTGTGTACACTCATATCTTATGGG 59.732 42.308 25.60 9.30 0.00 4.00
3200 3624 2.102420 CTGTGGAGTGTGTTGTCTGGTA 59.898 50.000 0.00 0.00 0.00 3.25
3210 3634 2.832129 TGTTGTCTGGTACCTGAGGATC 59.168 50.000 20.79 10.35 0.00 3.36
3243 3667 8.638565 CAAATTTGGAATGAATACTGAAACGAC 58.361 33.333 10.49 0.00 0.00 4.34
3303 3727 3.713248 TGAGATGATGAATACACCTGGCT 59.287 43.478 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.277713 CGTCTCGTAGAAGGAAAAATAAAAACA 58.722 33.333 0.00 0.00 34.09 2.83
34 35 7.267811 GCGTCTCGTAGAAGGAAAAATAAAAAC 59.732 37.037 0.00 0.00 34.09 2.43
35 36 7.041916 TGCGTCTCGTAGAAGGAAAAATAAAAA 60.042 33.333 0.00 0.00 34.09 1.94
36 37 6.424509 TGCGTCTCGTAGAAGGAAAAATAAAA 59.575 34.615 0.00 0.00 34.09 1.52
38 39 5.346822 GTGCGTCTCGTAGAAGGAAAAATAA 59.653 40.000 0.00 0.00 34.09 1.40
40 41 3.678548 GTGCGTCTCGTAGAAGGAAAAAT 59.321 43.478 0.00 0.00 34.09 1.82
50 51 5.749620 AGAAGTATATTGTGCGTCTCGTAG 58.250 41.667 0.00 0.00 0.00 3.51
51 52 5.295045 TGAGAAGTATATTGTGCGTCTCGTA 59.705 40.000 9.00 0.00 45.86 3.43
54 55 4.979197 CCTGAGAAGTATATTGTGCGTCTC 59.021 45.833 7.29 7.29 44.20 3.36
58 59 4.302455 CTCCCTGAGAAGTATATTGTGCG 58.698 47.826 0.00 0.00 0.00 5.34
63 64 4.298626 TGTGCCTCCCTGAGAAGTATATT 58.701 43.478 0.00 0.00 0.00 1.28
65 66 3.398318 TGTGCCTCCCTGAGAAGTATA 57.602 47.619 0.00 0.00 0.00 1.47
69 70 2.503895 ATTTGTGCCTCCCTGAGAAG 57.496 50.000 0.00 0.00 0.00 2.85
70 71 2.892852 CAAATTTGTGCCTCCCTGAGAA 59.107 45.455 10.15 0.00 0.00 2.87
72 73 2.242043 ACAAATTTGTGCCTCCCTGAG 58.758 47.619 22.71 0.00 40.49 3.35
73 74 2.380064 ACAAATTTGTGCCTCCCTGA 57.620 45.000 22.71 0.00 40.49 3.86
74 75 3.473923 AAACAAATTTGTGCCTCCCTG 57.526 42.857 23.93 0.00 41.31 4.45
75 76 3.711190 AGAAAACAAATTTGTGCCTCCCT 59.289 39.130 23.93 12.30 41.31 4.20
77 78 3.735746 CGAGAAAACAAATTTGTGCCTCC 59.264 43.478 23.93 12.46 41.31 4.30
79 80 4.338118 TCTCGAGAAAACAAATTTGTGCCT 59.662 37.500 23.93 19.12 41.31 4.75
80 81 4.606961 TCTCGAGAAAACAAATTTGTGCC 58.393 39.130 23.93 15.20 41.31 5.01
81 82 4.676924 CCTCTCGAGAAAACAAATTTGTGC 59.323 41.667 23.93 15.79 41.31 4.57
82 83 4.676924 GCCTCTCGAGAAAACAAATTTGTG 59.323 41.667 23.93 10.71 41.31 3.33
83 84 4.338118 TGCCTCTCGAGAAAACAAATTTGT 59.662 37.500 18.13 18.13 44.72 2.83
84 85 4.858935 TGCCTCTCGAGAAAACAAATTTG 58.141 39.130 17.36 16.67 0.00 2.32
85 86 5.464168 CATGCCTCTCGAGAAAACAAATTT 58.536 37.500 17.36 0.00 0.00 1.82
86 87 4.082571 CCATGCCTCTCGAGAAAACAAATT 60.083 41.667 17.36 0.00 0.00 1.82
87 88 3.441572 CCATGCCTCTCGAGAAAACAAAT 59.558 43.478 17.36 2.10 0.00 2.32
88 89 2.813754 CCATGCCTCTCGAGAAAACAAA 59.186 45.455 17.36 0.00 0.00 2.83
89 90 2.224523 ACCATGCCTCTCGAGAAAACAA 60.225 45.455 17.36 1.10 0.00 2.83
90 91 1.347707 ACCATGCCTCTCGAGAAAACA 59.652 47.619 17.36 14.52 0.00 2.83
91 92 2.003301 GACCATGCCTCTCGAGAAAAC 58.997 52.381 17.36 9.16 0.00 2.43
92 93 1.902508 AGACCATGCCTCTCGAGAAAA 59.097 47.619 17.36 5.21 0.00 2.29
93 94 1.561643 AGACCATGCCTCTCGAGAAA 58.438 50.000 17.36 5.59 0.00 2.52
94 95 1.205655 CAAGACCATGCCTCTCGAGAA 59.794 52.381 17.36 1.60 0.00 2.87
95 96 0.820226 CAAGACCATGCCTCTCGAGA 59.180 55.000 15.70 15.70 0.00 4.04
96 97 0.809241 GCAAGACCATGCCTCTCGAG 60.809 60.000 5.93 5.93 40.49 4.04
97 98 1.219124 GCAAGACCATGCCTCTCGA 59.781 57.895 0.00 0.00 40.49 4.04
98 99 0.463295 ATGCAAGACCATGCCTCTCG 60.463 55.000 0.00 0.00 45.83 4.04
99 100 1.134159 AGATGCAAGACCATGCCTCTC 60.134 52.381 0.00 0.00 44.62 3.20
100 101 0.917533 AGATGCAAGACCATGCCTCT 59.082 50.000 0.00 1.93 45.83 3.69
101 102 1.134159 AGAGATGCAAGACCATGCCTC 60.134 52.381 0.00 0.00 45.83 4.70
102 103 0.917533 AGAGATGCAAGACCATGCCT 59.082 50.000 0.00 0.00 45.83 4.75
103 104 1.022735 CAGAGATGCAAGACCATGCC 58.977 55.000 0.00 0.00 45.83 4.40
104 105 2.034104 TCAGAGATGCAAGACCATGC 57.966 50.000 0.00 0.00 46.58 4.06
105 106 4.142447 CCTTTTCAGAGATGCAAGACCATG 60.142 45.833 0.00 0.00 0.00 3.66
106 107 4.015084 CCTTTTCAGAGATGCAAGACCAT 58.985 43.478 0.00 0.00 0.00 3.55
107 108 3.072915 TCCTTTTCAGAGATGCAAGACCA 59.927 43.478 0.00 0.00 0.00 4.02
108 109 3.679389 TCCTTTTCAGAGATGCAAGACC 58.321 45.455 0.00 0.00 0.00 3.85
109 110 5.695851 TTTCCTTTTCAGAGATGCAAGAC 57.304 39.130 0.00 0.00 0.00 3.01
110 111 5.593909 TGTTTTCCTTTTCAGAGATGCAAGA 59.406 36.000 0.00 0.00 0.00 3.02
111 112 5.835257 TGTTTTCCTTTTCAGAGATGCAAG 58.165 37.500 0.00 0.00 0.00 4.01
112 113 5.850557 TGTTTTCCTTTTCAGAGATGCAA 57.149 34.783 0.00 0.00 0.00 4.08
113 114 5.850557 TTGTTTTCCTTTTCAGAGATGCA 57.149 34.783 0.00 0.00 0.00 3.96
114 115 7.719778 AAATTGTTTTCCTTTTCAGAGATGC 57.280 32.000 0.00 0.00 0.00 3.91
149 150 5.126396 AGAAGTAAATTTGTGCCTCTTGC 57.874 39.130 0.00 0.00 41.77 4.01
150 151 6.738114 TCAAGAAGTAAATTTGTGCCTCTTG 58.262 36.000 16.23 16.23 34.10 3.02
151 152 6.959639 TCAAGAAGTAAATTTGTGCCTCTT 57.040 33.333 0.00 0.03 0.00 2.85
152 153 6.772716 TCTTCAAGAAGTAAATTTGTGCCTCT 59.227 34.615 9.44 0.00 39.38 3.69
153 154 6.970484 TCTTCAAGAAGTAAATTTGTGCCTC 58.030 36.000 9.44 0.00 39.38 4.70
154 155 6.959639 TCTTCAAGAAGTAAATTTGTGCCT 57.040 33.333 9.44 0.00 39.38 4.75
155 156 7.147976 ACATCTTCAAGAAGTAAATTTGTGCC 58.852 34.615 9.44 0.00 39.38 5.01
156 157 9.118236 GTACATCTTCAAGAAGTAAATTTGTGC 57.882 33.333 4.07 0.00 39.38 4.57
157 158 9.318041 CGTACATCTTCAAGAAGTAAATTTGTG 57.682 33.333 4.07 0.00 39.38 3.33
158 159 8.504005 CCGTACATCTTCAAGAAGTAAATTTGT 58.496 33.333 4.07 0.00 39.38 2.83
159 160 8.717821 TCCGTACATCTTCAAGAAGTAAATTTG 58.282 33.333 4.07 0.00 39.38 2.32
160 161 8.842358 TCCGTACATCTTCAAGAAGTAAATTT 57.158 30.769 4.07 0.00 39.38 1.82
161 162 9.449719 AATCCGTACATCTTCAAGAAGTAAATT 57.550 29.630 4.07 3.22 39.38 1.82
162 163 9.449719 AAATCCGTACATCTTCAAGAAGTAAAT 57.550 29.630 4.07 0.00 39.38 1.40
163 164 8.717821 CAAATCCGTACATCTTCAAGAAGTAAA 58.282 33.333 4.07 0.00 39.38 2.01
164 165 7.148474 GCAAATCCGTACATCTTCAAGAAGTAA 60.148 37.037 4.07 0.00 39.38 2.24
165 166 6.312918 GCAAATCCGTACATCTTCAAGAAGTA 59.687 38.462 9.44 0.00 39.38 2.24
166 167 5.122396 GCAAATCCGTACATCTTCAAGAAGT 59.878 40.000 9.44 0.17 39.38 3.01
167 168 5.352569 AGCAAATCCGTACATCTTCAAGAAG 59.647 40.000 3.43 3.43 39.71 2.85
168 169 5.245531 AGCAAATCCGTACATCTTCAAGAA 58.754 37.500 0.00 0.00 0.00 2.52
169 170 4.832248 AGCAAATCCGTACATCTTCAAGA 58.168 39.130 0.00 0.00 0.00 3.02
170 171 5.352569 AGAAGCAAATCCGTACATCTTCAAG 59.647 40.000 0.00 0.00 33.06 3.02
171 172 5.245531 AGAAGCAAATCCGTACATCTTCAA 58.754 37.500 0.00 0.00 33.06 2.69
172 173 4.832248 AGAAGCAAATCCGTACATCTTCA 58.168 39.130 0.00 0.00 33.06 3.02
173 174 5.810587 TGTAGAAGCAAATCCGTACATCTTC 59.189 40.000 0.00 0.00 0.00 2.87
174 175 5.730550 TGTAGAAGCAAATCCGTACATCTT 58.269 37.500 0.00 0.00 0.00 2.40
175 176 5.339008 TGTAGAAGCAAATCCGTACATCT 57.661 39.130 0.00 0.00 0.00 2.90
176 177 5.559035 GCATGTAGAAGCAAATCCGTACATC 60.559 44.000 0.00 0.00 30.49 3.06
177 178 4.273480 GCATGTAGAAGCAAATCCGTACAT 59.727 41.667 0.00 0.00 32.58 2.29
178 179 3.621268 GCATGTAGAAGCAAATCCGTACA 59.379 43.478 0.00 0.00 0.00 2.90
179 180 3.302480 CGCATGTAGAAGCAAATCCGTAC 60.302 47.826 0.00 0.00 0.00 3.67
180 181 2.863740 CGCATGTAGAAGCAAATCCGTA 59.136 45.455 0.00 0.00 0.00 4.02
181 182 1.665679 CGCATGTAGAAGCAAATCCGT 59.334 47.619 0.00 0.00 0.00 4.69
182 183 1.003545 CCGCATGTAGAAGCAAATCCG 60.004 52.381 0.00 0.00 0.00 4.18
183 184 1.268743 GCCGCATGTAGAAGCAAATCC 60.269 52.381 0.00 0.00 0.00 3.01
184 185 1.401552 TGCCGCATGTAGAAGCAAATC 59.598 47.619 0.00 0.00 0.00 2.17
185 186 1.133025 GTGCCGCATGTAGAAGCAAAT 59.867 47.619 0.00 0.00 34.79 2.32
186 187 0.521291 GTGCCGCATGTAGAAGCAAA 59.479 50.000 0.00 0.00 34.79 3.68
187 188 1.634757 CGTGCCGCATGTAGAAGCAA 61.635 55.000 4.27 0.00 34.79 3.91
188 189 2.100031 CGTGCCGCATGTAGAAGCA 61.100 57.895 4.27 0.00 0.00 3.91
189 190 2.703409 CGTGCCGCATGTAGAAGC 59.297 61.111 4.27 0.00 0.00 3.86
204 205 1.806461 TTTCTGAGAGGCACGAGCGT 61.806 55.000 0.00 0.00 43.41 5.07
205 206 1.075425 CTTTCTGAGAGGCACGAGCG 61.075 60.000 0.00 0.00 43.41 5.03
206 207 0.244994 TCTTTCTGAGAGGCACGAGC 59.755 55.000 0.00 0.00 41.10 5.03
207 208 2.276472 CTCTTTCTGAGAGGCACGAG 57.724 55.000 0.00 0.00 46.77 4.18
215 216 3.131396 GCACGTTTTCCTCTTTCTGAGA 58.869 45.455 0.00 0.00 45.39 3.27
216 217 2.096713 CGCACGTTTTCCTCTTTCTGAG 60.097 50.000 0.00 0.00 42.30 3.35
217 218 1.864711 CGCACGTTTTCCTCTTTCTGA 59.135 47.619 0.00 0.00 0.00 3.27
218 219 1.597663 ACGCACGTTTTCCTCTTTCTG 59.402 47.619 0.00 0.00 0.00 3.02
219 220 1.949465 ACGCACGTTTTCCTCTTTCT 58.051 45.000 0.00 0.00 0.00 2.52
220 221 2.750301 AACGCACGTTTTCCTCTTTC 57.250 45.000 1.93 0.00 34.22 2.62
239 240 3.569701 GTGTGCCTCTCATGGAAGAAAAA 59.430 43.478 0.00 0.00 0.00 1.94
240 241 3.149196 GTGTGCCTCTCATGGAAGAAAA 58.851 45.455 0.00 0.00 0.00 2.29
241 242 2.106338 TGTGTGCCTCTCATGGAAGAAA 59.894 45.455 0.00 0.00 0.00 2.52
242 243 1.699083 TGTGTGCCTCTCATGGAAGAA 59.301 47.619 0.00 0.00 0.00 2.52
243 244 1.351076 TGTGTGCCTCTCATGGAAGA 58.649 50.000 0.00 0.00 0.00 2.87
244 245 2.414994 ATGTGTGCCTCTCATGGAAG 57.585 50.000 0.00 0.00 0.00 3.46
245 246 2.885135 AATGTGTGCCTCTCATGGAA 57.115 45.000 0.00 0.00 31.74 3.53
246 247 2.885135 AAATGTGTGCCTCTCATGGA 57.115 45.000 0.00 0.00 31.74 3.41
247 248 3.614092 AGTAAATGTGTGCCTCTCATGG 58.386 45.455 0.00 0.00 31.74 3.66
248 249 4.940046 AGAAGTAAATGTGTGCCTCTCATG 59.060 41.667 0.00 0.00 31.74 3.07
249 250 5.171339 AGAAGTAAATGTGTGCCTCTCAT 57.829 39.130 0.00 0.00 32.53 2.90
250 251 4.569943 GAGAAGTAAATGTGTGCCTCTCA 58.430 43.478 0.00 0.00 0.00 3.27
251 252 3.614616 CGAGAAGTAAATGTGTGCCTCTC 59.385 47.826 0.00 0.00 0.00 3.20
252 253 3.006967 ACGAGAAGTAAATGTGTGCCTCT 59.993 43.478 0.00 0.00 0.00 3.69
253 254 3.123621 CACGAGAAGTAAATGTGTGCCTC 59.876 47.826 0.00 0.00 0.00 4.70
254 255 3.067106 CACGAGAAGTAAATGTGTGCCT 58.933 45.455 0.00 0.00 0.00 4.75
255 256 3.064207 TCACGAGAAGTAAATGTGTGCC 58.936 45.455 0.00 0.00 32.55 5.01
256 257 4.702392 CTTCACGAGAAGTAAATGTGTGC 58.298 43.478 13.71 0.00 44.97 4.57
273 274 3.057245 GGGAAGAAAATCAGTGCCTTCAC 60.057 47.826 0.00 0.00 43.44 3.18
274 275 3.157087 GGGAAGAAAATCAGTGCCTTCA 58.843 45.455 0.00 0.00 36.03 3.02
275 276 2.493675 GGGGAAGAAAATCAGTGCCTTC 59.506 50.000 0.00 0.00 34.19 3.46
276 277 2.529632 GGGGAAGAAAATCAGTGCCTT 58.470 47.619 0.00 0.00 0.00 4.35
277 278 1.614317 CGGGGAAGAAAATCAGTGCCT 60.614 52.381 0.00 0.00 0.00 4.75
278 279 0.811281 CGGGGAAGAAAATCAGTGCC 59.189 55.000 0.00 0.00 0.00 5.01
279 280 1.200020 CACGGGGAAGAAAATCAGTGC 59.800 52.381 0.00 0.00 0.00 4.40
280 281 2.744202 CTCACGGGGAAGAAAATCAGTG 59.256 50.000 0.00 0.00 0.00 3.66
281 282 2.290323 CCTCACGGGGAAGAAAATCAGT 60.290 50.000 0.00 0.00 0.00 3.41
282 283 2.359900 CCTCACGGGGAAGAAAATCAG 58.640 52.381 0.00 0.00 0.00 2.90
283 284 1.613255 GCCTCACGGGGAAGAAAATCA 60.613 52.381 0.00 0.00 35.12 2.57
284 285 1.095600 GCCTCACGGGGAAGAAAATC 58.904 55.000 0.00 0.00 35.12 2.17
285 286 0.404040 TGCCTCACGGGGAAGAAAAT 59.596 50.000 0.00 0.00 35.12 1.82
286 287 0.404040 ATGCCTCACGGGGAAGAAAA 59.596 50.000 0.00 0.00 39.39 2.29
287 288 0.322456 CATGCCTCACGGGGAAGAAA 60.322 55.000 0.00 0.00 39.39 2.52
288 289 1.198094 TCATGCCTCACGGGGAAGAA 61.198 55.000 0.00 0.00 39.39 2.52
289 290 0.982852 ATCATGCCTCACGGGGAAGA 60.983 55.000 0.00 0.00 39.39 2.87
290 291 0.107017 AATCATGCCTCACGGGGAAG 60.107 55.000 0.00 0.00 39.39 3.46
291 292 0.394216 CAATCATGCCTCACGGGGAA 60.394 55.000 0.00 0.00 39.39 3.97
292 293 1.224315 CAATCATGCCTCACGGGGA 59.776 57.895 0.00 0.00 40.52 4.81
293 294 1.077501 ACAATCATGCCTCACGGGG 60.078 57.895 0.00 0.00 35.12 5.73
294 295 1.996786 GCACAATCATGCCTCACGGG 61.997 60.000 0.00 0.00 39.86 5.28
295 296 1.430632 GCACAATCATGCCTCACGG 59.569 57.895 0.00 0.00 39.86 4.94
302 303 3.581024 TTTTGAGAGGCACAATCATGC 57.419 42.857 0.00 0.00 45.34 4.06
303 304 5.381174 TCTTTTTGAGAGGCACAATCATG 57.619 39.130 0.00 0.00 0.00 3.07
304 305 5.640189 CTCTTTTTGAGAGGCACAATCAT 57.360 39.130 0.00 0.00 46.77 2.45
349 350 9.499479 CATGAGAAGTAAATATGTGCCTCTTAT 57.501 33.333 0.00 0.00 0.00 1.73
350 351 7.933577 CCATGAGAAGTAAATATGTGCCTCTTA 59.066 37.037 0.00 0.00 0.00 2.10
351 352 6.769822 CCATGAGAAGTAAATATGTGCCTCTT 59.230 38.462 0.00 0.00 0.00 2.85
360 361 4.040952 AGCGCCTCCATGAGAAGTAAATAT 59.959 41.667 2.29 0.00 0.00 1.28
366 367 1.220206 CAGCGCCTCCATGAGAAGT 59.780 57.895 2.29 0.00 0.00 3.01
372 373 1.065273 GCAAATCAGCGCCTCCATG 59.935 57.895 2.29 0.00 0.00 3.66
373 374 0.682209 AAGCAAATCAGCGCCTCCAT 60.682 50.000 2.29 0.00 40.15 3.41
374 375 0.895100 AAAGCAAATCAGCGCCTCCA 60.895 50.000 2.29 0.00 40.15 3.86
375 376 0.179153 GAAAGCAAATCAGCGCCTCC 60.179 55.000 2.29 0.00 40.15 4.30
405 605 3.851845 TTTCCGAGTGGCACGACCG 62.852 63.158 12.71 16.14 43.94 4.79
453 665 5.465056 GGCTCTATGAGAAGTAAATCTGCAC 59.535 44.000 0.00 0.00 0.00 4.57
454 666 5.129320 TGGCTCTATGAGAAGTAAATCTGCA 59.871 40.000 0.00 0.00 0.00 4.41
455 667 5.465056 GTGGCTCTATGAGAAGTAAATCTGC 59.535 44.000 0.00 0.00 0.00 4.26
457 669 5.361285 ACGTGGCTCTATGAGAAGTAAATCT 59.639 40.000 0.00 0.00 0.00 2.40
459 671 5.599999 ACGTGGCTCTATGAGAAGTAAAT 57.400 39.130 0.00 0.00 0.00 1.40
463 675 3.622630 AGTACGTGGCTCTATGAGAAGT 58.377 45.455 0.00 0.00 0.00 3.01
468 680 2.100197 AGCAAGTACGTGGCTCTATGA 58.900 47.619 10.87 0.00 30.74 2.15
469 681 2.586258 AGCAAGTACGTGGCTCTATG 57.414 50.000 10.87 0.00 30.74 2.23
470 682 3.522553 GAAAGCAAGTACGTGGCTCTAT 58.477 45.455 10.87 1.13 36.76 1.98
471 683 2.670229 CGAAAGCAAGTACGTGGCTCTA 60.670 50.000 10.87 0.00 36.76 2.43
481 693 1.343142 TGCCTCTCACGAAAGCAAGTA 59.657 47.619 0.00 0.00 0.00 2.24
482 694 0.106708 TGCCTCTCACGAAAGCAAGT 59.893 50.000 0.00 0.00 0.00 3.16
483 695 0.514691 GTGCCTCTCACGAAAGCAAG 59.485 55.000 0.00 0.00 35.76 4.01
484 696 2.616969 GTGCCTCTCACGAAAGCAA 58.383 52.632 0.00 0.00 35.76 3.91
545 760 1.021390 ATCTGCGCCTTTCACGGAAG 61.021 55.000 4.18 0.00 0.00 3.46
554 774 3.334583 TGAGAAGTAAATCTGCGCCTT 57.665 42.857 4.18 0.00 0.00 4.35
557 777 3.198068 TCCATGAGAAGTAAATCTGCGC 58.802 45.455 0.00 0.00 0.00 6.09
561 781 5.643421 ATGCCTCCATGAGAAGTAAATCT 57.357 39.130 0.00 0.00 0.00 2.40
573 793 3.980583 GCAAATCCATGCCTCCATG 57.019 52.632 0.00 0.00 46.70 3.66
576 796 0.749049 GGAAGCAAATCCATGCCTCC 59.251 55.000 1.51 1.51 46.51 4.30
586 806 0.036732 TGCCTCTCGTGGAAGCAAAT 59.963 50.000 2.93 0.00 38.32 2.32
610 830 2.113860 TTTCCTTTCCGAGAGCCATG 57.886 50.000 0.00 0.00 0.00 3.66
611 831 2.879103 TTTTCCTTTCCGAGAGCCAT 57.121 45.000 0.00 0.00 0.00 4.40
614 834 6.094186 ACATATTCTTTTTCCTTTCCGAGAGC 59.906 38.462 0.00 0.00 0.00 4.09
617 862 7.251281 GGAACATATTCTTTTTCCTTTCCGAG 58.749 38.462 0.00 0.00 35.56 4.63
627 872 4.157105 CCGAACCGGGAACATATTCTTTTT 59.843 41.667 6.32 0.00 44.15 1.94
685 935 6.356556 TCGATCCATGTTGATAGGTTTTCAT 58.643 36.000 0.00 0.00 0.00 2.57
687 937 5.817816 ACTCGATCCATGTTGATAGGTTTTC 59.182 40.000 0.00 0.00 0.00 2.29
708 959 2.094417 CGCTTCGGGATCTTCAAAACTC 59.906 50.000 0.00 0.00 0.00 3.01
722 973 2.579207 TGTTAGATTCCTCGCTTCGG 57.421 50.000 0.00 0.00 0.00 4.30
726 977 5.705441 TGTTTTCATTGTTAGATTCCTCGCT 59.295 36.000 0.00 0.00 0.00 4.93
741 992 9.887406 GCATTCAAATCTTCAATTGTTTTCATT 57.113 25.926 5.13 0.00 0.00 2.57
742 993 9.058174 TGCATTCAAATCTTCAATTGTTTTCAT 57.942 25.926 5.13 0.00 0.00 2.57
748 999 7.439381 AGTCTTGCATTCAAATCTTCAATTGT 58.561 30.769 5.13 0.00 0.00 2.71
751 1002 7.663827 TCAAGTCTTGCATTCAAATCTTCAAT 58.336 30.769 7.78 0.00 0.00 2.57
754 1005 6.906659 TCTCAAGTCTTGCATTCAAATCTTC 58.093 36.000 7.78 0.00 0.00 2.87
755 1006 6.713903 TCTCTCAAGTCTTGCATTCAAATCTT 59.286 34.615 7.78 0.00 0.00 2.40
763 1014 8.345724 ACATTTTATCTCTCAAGTCTTGCATT 57.654 30.769 7.78 0.00 0.00 3.56
765 1016 7.750229 AACATTTTATCTCTCAAGTCTTGCA 57.250 32.000 7.78 0.00 0.00 4.08
818 1069 9.958234 TCAAATCTTCAATTGTTTTCATCGTTA 57.042 25.926 5.13 0.00 0.00 3.18
819 1070 8.870160 TCAAATCTTCAATTGTTTTCATCGTT 57.130 26.923 5.13 0.00 0.00 3.85
820 1071 8.870160 TTCAAATCTTCAATTGTTTTCATCGT 57.130 26.923 5.13 0.00 0.00 3.73
821 1072 9.735646 CATTCAAATCTTCAATTGTTTTCATCG 57.264 29.630 5.13 0.00 0.00 3.84
822 1073 9.537848 GCATTCAAATCTTCAATTGTTTTCATC 57.462 29.630 5.13 0.00 0.00 2.92
823 1074 9.058174 TGCATTCAAATCTTCAATTGTTTTCAT 57.942 25.926 5.13 0.00 0.00 2.57
824 1075 8.434733 TGCATTCAAATCTTCAATTGTTTTCA 57.565 26.923 5.13 0.00 0.00 2.69
825 1076 9.377383 CTTGCATTCAAATCTTCAATTGTTTTC 57.623 29.630 5.13 0.00 0.00 2.29
826 1077 9.111613 TCTTGCATTCAAATCTTCAATTGTTTT 57.888 25.926 5.13 0.00 0.00 2.43
827 1078 8.553696 GTCTTGCATTCAAATCTTCAATTGTTT 58.446 29.630 5.13 0.00 0.00 2.83
828 1079 7.929785 AGTCTTGCATTCAAATCTTCAATTGTT 59.070 29.630 5.13 0.00 0.00 2.83
829 1080 7.439381 AGTCTTGCATTCAAATCTTCAATTGT 58.561 30.769 5.13 0.00 0.00 2.71
830 1081 7.884816 AGTCTTGCATTCAAATCTTCAATTG 57.115 32.000 0.00 0.00 0.00 2.32
831 1082 8.145767 TCAAGTCTTGCATTCAAATCTTCAATT 58.854 29.630 7.78 0.00 0.00 2.32
832 1083 7.663827 TCAAGTCTTGCATTCAAATCTTCAAT 58.336 30.769 7.78 0.00 0.00 2.57
833 1084 7.013559 TCTCAAGTCTTGCATTCAAATCTTCAA 59.986 33.333 7.78 0.00 0.00 2.69
834 1085 6.487668 TCTCAAGTCTTGCATTCAAATCTTCA 59.512 34.615 7.78 0.00 0.00 3.02
835 1086 6.906659 TCTCAAGTCTTGCATTCAAATCTTC 58.093 36.000 7.78 0.00 0.00 2.87
836 1087 6.713903 TCTCTCAAGTCTTGCATTCAAATCTT 59.286 34.615 7.78 0.00 0.00 2.40
837 1088 6.236409 TCTCTCAAGTCTTGCATTCAAATCT 58.764 36.000 7.78 0.00 0.00 2.40
838 1089 6.492007 TCTCTCAAGTCTTGCATTCAAATC 57.508 37.500 7.78 0.00 0.00 2.17
839 1090 8.571461 TTATCTCTCAAGTCTTGCATTCAAAT 57.429 30.769 7.78 0.00 0.00 2.32
840 1091 7.984422 TTATCTCTCAAGTCTTGCATTCAAA 57.016 32.000 7.78 0.00 0.00 2.69
841 1092 7.984422 TTTATCTCTCAAGTCTTGCATTCAA 57.016 32.000 7.78 0.00 0.00 2.69
842 1093 7.984422 TTTTATCTCTCAAGTCTTGCATTCA 57.016 32.000 7.78 0.00 0.00 2.57
843 1094 7.914346 CCATTTTATCTCTCAAGTCTTGCATTC 59.086 37.037 7.78 0.00 0.00 2.67
844 1095 7.395489 ACCATTTTATCTCTCAAGTCTTGCATT 59.605 33.333 7.78 0.00 0.00 3.56
845 1096 6.888632 ACCATTTTATCTCTCAAGTCTTGCAT 59.111 34.615 7.78 0.53 0.00 3.96
846 1097 6.240894 ACCATTTTATCTCTCAAGTCTTGCA 58.759 36.000 7.78 0.00 0.00 4.08
847 1098 6.749923 ACCATTTTATCTCTCAAGTCTTGC 57.250 37.500 7.78 0.00 0.00 4.01
848 1099 8.786898 TCAAACCATTTTATCTCTCAAGTCTTG 58.213 33.333 6.21 6.21 0.00 3.02
849 1100 8.924511 TCAAACCATTTTATCTCTCAAGTCTT 57.075 30.769 0.00 0.00 0.00 3.01
850 1101 8.924511 TTCAAACCATTTTATCTCTCAAGTCT 57.075 30.769 0.00 0.00 0.00 3.24
894 1145 7.745620 ATTCTTGTCGTAACCTGAGATTTTT 57.254 32.000 0.00 0.00 0.00 1.94
895 1146 7.876068 TGTATTCTTGTCGTAACCTGAGATTTT 59.124 33.333 0.00 0.00 0.00 1.82
896 1147 7.331193 GTGTATTCTTGTCGTAACCTGAGATTT 59.669 37.037 0.00 0.00 0.00 2.17
897 1148 6.812160 GTGTATTCTTGTCGTAACCTGAGATT 59.188 38.462 0.00 0.00 0.00 2.40
898 1149 6.071560 TGTGTATTCTTGTCGTAACCTGAGAT 60.072 38.462 0.00 0.00 0.00 2.75
899 1150 5.242171 TGTGTATTCTTGTCGTAACCTGAGA 59.758 40.000 0.00 0.00 0.00 3.27
900 1151 5.345202 GTGTGTATTCTTGTCGTAACCTGAG 59.655 44.000 0.00 0.00 0.00 3.35
901 1152 5.221283 TGTGTGTATTCTTGTCGTAACCTGA 60.221 40.000 0.00 0.00 0.00 3.86
902 1153 4.986034 TGTGTGTATTCTTGTCGTAACCTG 59.014 41.667 0.00 0.00 0.00 4.00
903 1154 5.204409 TGTGTGTATTCTTGTCGTAACCT 57.796 39.130 0.00 0.00 0.00 3.50
904 1155 6.237384 CGTATGTGTGTATTCTTGTCGTAACC 60.237 42.308 0.00 0.00 0.00 2.85
905 1156 6.237384 CCGTATGTGTGTATTCTTGTCGTAAC 60.237 42.308 0.00 0.00 0.00 2.50
906 1157 5.801444 CCGTATGTGTGTATTCTTGTCGTAA 59.199 40.000 0.00 0.00 0.00 3.18
907 1158 5.106197 ACCGTATGTGTGTATTCTTGTCGTA 60.106 40.000 0.00 0.00 0.00 3.43
908 1159 4.171005 CCGTATGTGTGTATTCTTGTCGT 58.829 43.478 0.00 0.00 0.00 4.34
909 1160 4.031314 CACCGTATGTGTGTATTCTTGTCG 59.969 45.833 0.00 0.00 40.26 4.35
910 1161 5.165676 TCACCGTATGTGTGTATTCTTGTC 58.834 41.667 0.00 0.00 45.61 3.18
911 1162 5.142061 TCACCGTATGTGTGTATTCTTGT 57.858 39.130 0.00 0.00 45.61 3.16
912 1163 4.566759 CCTCACCGTATGTGTGTATTCTTG 59.433 45.833 0.00 0.00 45.61 3.02
913 1164 4.755411 CCTCACCGTATGTGTGTATTCTT 58.245 43.478 0.00 0.00 45.61 2.52
914 1165 3.430374 GCCTCACCGTATGTGTGTATTCT 60.430 47.826 0.00 0.00 45.61 2.40
915 1166 2.864343 GCCTCACCGTATGTGTGTATTC 59.136 50.000 0.00 0.00 45.61 1.75
916 1167 2.235155 TGCCTCACCGTATGTGTGTATT 59.765 45.455 0.00 0.00 45.61 1.89
917 1168 1.828595 TGCCTCACCGTATGTGTGTAT 59.171 47.619 0.00 0.00 45.61 2.29
918 1169 1.258676 TGCCTCACCGTATGTGTGTA 58.741 50.000 0.00 0.00 45.61 2.90
919 1170 0.394938 TTGCCTCACCGTATGTGTGT 59.605 50.000 0.00 0.00 45.61 3.72
920 1171 1.518325 TTTGCCTCACCGTATGTGTG 58.482 50.000 0.00 0.00 45.61 3.82
921 1172 2.487762 CAATTTGCCTCACCGTATGTGT 59.512 45.455 0.00 0.00 45.61 3.72
922 1173 2.159393 CCAATTTGCCTCACCGTATGTG 60.159 50.000 0.00 0.00 46.88 3.21
923 1174 2.091541 CCAATTTGCCTCACCGTATGT 58.908 47.619 0.00 0.00 0.00 2.29
924 1175 1.405105 CCCAATTTGCCTCACCGTATG 59.595 52.381 0.00 0.00 0.00 2.39
925 1176 1.762708 CCCAATTTGCCTCACCGTAT 58.237 50.000 0.00 0.00 0.00 3.06
926 1177 0.963355 GCCCAATTTGCCTCACCGTA 60.963 55.000 0.00 0.00 0.00 4.02
927 1178 2.275380 GCCCAATTTGCCTCACCGT 61.275 57.895 0.00 0.00 0.00 4.83
928 1179 2.573340 GCCCAATTTGCCTCACCG 59.427 61.111 0.00 0.00 0.00 4.94
929 1180 2.981302 GGCCCAATTTGCCTCACC 59.019 61.111 8.25 0.00 45.70 4.02
935 1186 1.337728 GGTGTACAAGGCCCAATTTGC 60.338 52.381 0.00 0.00 0.00 3.68
936 1187 1.275010 GGGTGTACAAGGCCCAATTTG 59.725 52.381 13.83 0.00 41.93 2.32
937 1188 1.149077 AGGGTGTACAAGGCCCAATTT 59.851 47.619 19.37 0.00 44.69 1.82
938 1189 0.783850 AGGGTGTACAAGGCCCAATT 59.216 50.000 19.37 0.00 44.69 2.32
939 1190 0.783850 AAGGGTGTACAAGGCCCAAT 59.216 50.000 19.37 7.45 44.69 3.16
940 1191 0.111639 GAAGGGTGTACAAGGCCCAA 59.888 55.000 19.37 0.00 44.69 4.12
941 1192 1.765074 GAAGGGTGTACAAGGCCCA 59.235 57.895 19.37 0.00 44.69 5.36
942 1193 1.001269 GGAAGGGTGTACAAGGCCC 60.001 63.158 11.32 11.32 42.64 5.80
943 1194 1.376812 CGGAAGGGTGTACAAGGCC 60.377 63.158 0.00 0.00 0.00 5.19
944 1195 0.391263 CTCGGAAGGGTGTACAAGGC 60.391 60.000 0.00 0.00 0.00 4.35
945 1196 0.249398 CCTCGGAAGGGTGTACAAGG 59.751 60.000 0.00 0.00 39.21 3.61
946 1197 3.834732 CCTCGGAAGGGTGTACAAG 57.165 57.895 0.00 0.00 39.21 3.16
965 1216 3.863400 GCTTCCGGTTCTGTTTGCTACTA 60.863 47.826 0.00 0.00 0.00 1.82
967 1218 1.197036 GCTTCCGGTTCTGTTTGCTAC 59.803 52.381 0.00 0.00 0.00 3.58
968 1219 1.519408 GCTTCCGGTTCTGTTTGCTA 58.481 50.000 0.00 0.00 0.00 3.49
969 1220 1.172812 GGCTTCCGGTTCTGTTTGCT 61.173 55.000 0.00 0.00 0.00 3.91
970 1221 1.285950 GGCTTCCGGTTCTGTTTGC 59.714 57.895 0.00 0.00 0.00 3.68
1578 1835 4.853050 AGGCAGCCGCTGAGCATC 62.853 66.667 24.80 5.49 38.60 3.91
1612 1869 0.886490 AACAGCGCCAGTCCTTCTTG 60.886 55.000 2.29 0.00 0.00 3.02
1708 1965 2.054799 TCTCCCTTGGTGTAAACTGCT 58.945 47.619 0.00 0.00 0.00 4.24
1924 2181 0.386476 TTGCCAGCAAACAGAAGCAG 59.614 50.000 1.81 0.00 32.44 4.24
1935 2192 1.868469 GCACAAATTTCTTGCCAGCA 58.132 45.000 9.34 0.00 0.00 4.41
1974 2231 4.378874 GCTGAAAGAACAGTTGCTATGGTC 60.379 45.833 0.00 0.00 39.73 4.02
2094 2503 8.283291 GCTTTACACTTTGCATACATATCTACC 58.717 37.037 0.00 0.00 0.00 3.18
2097 2506 7.554118 ACTGCTTTACACTTTGCATACATATCT 59.446 33.333 0.00 0.00 34.79 1.98
2190 2599 3.273434 GTCATTCTCAACATAGCCAGCA 58.727 45.455 0.00 0.00 0.00 4.41
2311 2720 6.795144 TTACCGATAAGTAGATCACCCAAA 57.205 37.500 0.00 0.00 0.00 3.28
2349 2758 4.023279 ACAGAAATGCGTATTTGACAGCAA 60.023 37.500 16.49 0.00 39.71 3.91
2360 2769 5.390040 CGTAAATGTTGGACAGAAATGCGTA 60.390 40.000 0.00 0.00 0.00 4.42
2450 2859 1.737838 TTGCGGTCATTCATCTCACC 58.262 50.000 0.00 0.00 0.00 4.02
2584 2993 3.545703 AGTGGAAAGGACACTTGTGAAG 58.454 45.455 7.83 0.00 46.38 3.02
2594 3003 0.823356 TGGCTGCAAGTGGAAAGGAC 60.823 55.000 0.50 0.00 35.30 3.85
2620 3029 6.838382 ACACTTCTTTCCTACAGTAACCATT 58.162 36.000 0.00 0.00 0.00 3.16
2627 3036 5.068723 TCTCGAAACACTTCTTTCCTACAGT 59.931 40.000 0.00 0.00 0.00 3.55
2647 3056 3.374988 TGAAATACTTTGCCATGCTCTCG 59.625 43.478 0.00 0.00 0.00 4.04
2660 3069 9.388506 CATAGAAGGAGTGATGTTGAAATACTT 57.611 33.333 0.00 0.00 0.00 2.24
2683 3092 7.447853 TCAACCATACATGCATAATGCTTCATA 59.552 33.333 13.34 0.00 45.31 2.15
2935 3344 5.177142 CGATCTCCTGATAGCAATTGACTTG 59.823 44.000 10.34 0.00 33.83 3.16
2941 3350 4.252073 GCATCGATCTCCTGATAGCAATT 58.748 43.478 0.00 0.00 32.19 2.32
2942 3351 3.260128 TGCATCGATCTCCTGATAGCAAT 59.740 43.478 0.00 0.00 32.19 3.56
3026 3435 1.707989 TGGCCTTTGTTAGGGACATCA 59.292 47.619 3.32 0.00 44.91 3.07
3032 3441 1.073923 ACTCTGTGGCCTTTGTTAGGG 59.926 52.381 3.32 0.00 44.91 3.53
3144 3564 4.493547 CATCCTTATTCTGGATCTCGCTC 58.506 47.826 0.00 0.00 41.94 5.03
3200 3624 0.252881 TTGGAGCCAGATCCTCAGGT 60.253 55.000 3.25 0.00 40.29 4.00
3217 3641 8.638565 GTCGTTTCAGTATTCATTCCAAATTTG 58.361 33.333 11.40 11.40 0.00 2.32
3220 3644 6.370442 TCGTCGTTTCAGTATTCATTCCAAAT 59.630 34.615 0.00 0.00 0.00 2.32
3232 3656 4.696877 TCAGTTATCCTCGTCGTTTCAGTA 59.303 41.667 0.00 0.00 0.00 2.74
3233 3657 3.504906 TCAGTTATCCTCGTCGTTTCAGT 59.495 43.478 0.00 0.00 0.00 3.41
3243 3667 8.438676 AAATTTGACCTTATCAGTTATCCTCG 57.561 34.615 0.00 0.00 38.99 4.63
3295 3719 0.957395 CTGCCAACACTAGCCAGGTG 60.957 60.000 0.00 0.00 40.19 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.