Multiple sequence alignment - TraesCS7B01G053300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G053300 chr7B 100.000 2348 0 0 1 2348 55863409 55861062 0.000000e+00 4337
1 TraesCS7B01G053300 chr7B 82.533 229 37 3 341 568 296353749 296353523 5.120000e-47 198
2 TraesCS7B01G053300 chr7B 78.623 276 52 5 366 640 59622141 59621872 2.400000e-40 176
3 TraesCS7B01G053300 chr7A 95.419 1397 49 7 956 2348 102546808 102545423 0.000000e+00 2211
4 TraesCS7B01G053300 chr7A 82.096 229 39 2 341 568 375897206 375896979 6.620000e-46 195
5 TraesCS7B01G053300 chr7D 97.581 868 20 1 1481 2348 100302532 100301666 0.000000e+00 1485
6 TraesCS7B01G053300 chr7D 92.537 536 21 2 943 1475 100303613 100303094 0.000000e+00 750
7 TraesCS7B01G053300 chr7D 80.795 302 46 8 337 635 100304970 100304678 2.350000e-55 226
8 TraesCS7B01G053300 chr1B 79.032 372 59 13 345 705 644303460 644303823 1.080000e-58 237
9 TraesCS7B01G053300 chr1B 92.053 151 10 2 215 363 488821924 488821774 6.570000e-51 211
10 TraesCS7B01G053300 chr1A 96.403 139 5 0 208 346 486045907 486045769 1.810000e-56 230
11 TraesCS7B01G053300 chr1A 93.289 149 7 3 195 342 547571957 547571811 1.410000e-52 217
12 TraesCS7B01G053300 chr6B 97.015 134 4 0 213 346 207510898 207511031 2.350000e-55 226
13 TraesCS7B01G053300 chr6B 83.333 192 31 1 9 199 672281481 672281672 2.400000e-40 176
14 TraesCS7B01G053300 chr2A 96.350 137 5 0 216 352 638330265 638330129 2.350000e-55 226
15 TraesCS7B01G053300 chr2A 81.070 243 39 6 402 639 539018594 539018354 1.110000e-43 187
16 TraesCS7B01G053300 chr2D 96.324 136 5 0 207 342 450745500 450745635 8.440000e-55 224
17 TraesCS7B01G053300 chr2B 95.035 141 7 0 202 342 620596818 620596678 3.040000e-54 222
18 TraesCS7B01G053300 chr2B 77.815 302 55 7 340 640 485166614 485166324 2.400000e-40 176
19 TraesCS7B01G053300 chrUn 95.000 140 7 0 215 354 103517774 103517635 1.090000e-53 220
20 TraesCS7B01G053300 chr4B 92.208 154 11 1 190 342 89457571 89457724 1.410000e-52 217
21 TraesCS7B01G053300 chr4B 86.740 181 21 3 14 192 416170082 416169903 5.120000e-47 198
22 TraesCS7B01G053300 chr5D 77.322 366 60 12 366 725 379841203 379840855 6.620000e-46 195
23 TraesCS7B01G053300 chr5D 81.871 171 28 3 24 193 354739964 354739796 8.750000e-30 141
24 TraesCS7B01G053300 chr5B 76.613 372 63 17 340 707 455749935 455749584 1.430000e-42 183
25 TraesCS7B01G053300 chr5B 81.218 197 33 3 25 217 278046187 278046383 3.120000e-34 156
26 TraesCS7B01G053300 chr5B 82.081 173 27 4 24 193 419516456 419516285 6.760000e-31 145
27 TraesCS7B01G053300 chr5A 80.435 184 33 3 23 203 456742956 456742773 1.130000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G053300 chr7B 55861062 55863409 2347 True 4337.000000 4337 100.000000 1 2348 1 chr7B.!!$R1 2347
1 TraesCS7B01G053300 chr7A 102545423 102546808 1385 True 2211.000000 2211 95.419000 956 2348 1 chr7A.!!$R1 1392
2 TraesCS7B01G053300 chr7D 100301666 100304970 3304 True 820.333333 1485 90.304333 337 2348 3 chr7D.!!$R1 2011

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.032267 GGTACCTAGTGCGAGCATCC 59.968 60.0 4.06 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1369 2140 1.001974 CAGTGACCCATTTGACTCGGA 59.998 52.381 0.0 0.0 0.0 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.334102 AGACATATTCTCTCCATACGGTTC 57.666 41.667 0.00 0.00 0.00 3.62
24 25 5.833667 AGACATATTCTCTCCATACGGTTCA 59.166 40.000 0.00 0.00 0.00 3.18
25 26 6.495181 AGACATATTCTCTCCATACGGTTCAT 59.505 38.462 0.00 0.00 0.00 2.57
26 27 6.692486 ACATATTCTCTCCATACGGTTCATC 58.308 40.000 0.00 0.00 0.00 2.92
27 28 6.495181 ACATATTCTCTCCATACGGTTCATCT 59.505 38.462 0.00 0.00 0.00 2.90
28 29 4.920640 TTCTCTCCATACGGTTCATCTC 57.079 45.455 0.00 0.00 0.00 2.75
29 30 3.898482 TCTCTCCATACGGTTCATCTCA 58.102 45.455 0.00 0.00 0.00 3.27
30 31 3.632604 TCTCTCCATACGGTTCATCTCAC 59.367 47.826 0.00 0.00 0.00 3.51
31 32 2.693591 TCTCCATACGGTTCATCTCACC 59.306 50.000 0.00 0.00 0.00 4.02
32 33 2.430694 CTCCATACGGTTCATCTCACCA 59.569 50.000 0.00 0.00 33.36 4.17
33 34 2.835156 TCCATACGGTTCATCTCACCAA 59.165 45.455 0.00 0.00 33.36 3.67
34 35 3.454447 TCCATACGGTTCATCTCACCAAT 59.546 43.478 0.00 0.00 33.36 3.16
35 36 3.561310 CCATACGGTTCATCTCACCAATG 59.439 47.826 0.00 0.00 33.36 2.82
36 37 4.441792 CATACGGTTCATCTCACCAATGA 58.558 43.478 0.00 0.00 32.55 2.57
37 38 2.699954 ACGGTTCATCTCACCAATGAC 58.300 47.619 0.00 0.00 33.01 3.06
38 39 2.038426 ACGGTTCATCTCACCAATGACA 59.962 45.455 0.00 0.00 33.01 3.58
39 40 3.273434 CGGTTCATCTCACCAATGACAT 58.727 45.455 0.00 0.00 33.01 3.06
40 41 3.310774 CGGTTCATCTCACCAATGACATC 59.689 47.826 0.00 0.00 33.01 3.06
41 42 4.264253 GGTTCATCTCACCAATGACATCA 58.736 43.478 0.00 0.00 33.01 3.07
42 43 4.334759 GGTTCATCTCACCAATGACATCAG 59.665 45.833 0.00 0.00 33.01 2.90
43 44 3.538591 TCATCTCACCAATGACATCAGC 58.461 45.455 0.00 0.00 0.00 4.26
44 45 2.014335 TCTCACCAATGACATCAGCG 57.986 50.000 0.00 0.00 0.00 5.18
45 46 1.012086 CTCACCAATGACATCAGCGG 58.988 55.000 0.00 0.00 0.00 5.52
46 47 1.026182 TCACCAATGACATCAGCGGC 61.026 55.000 0.00 0.00 0.00 6.53
47 48 2.108514 ACCAATGACATCAGCGGCG 61.109 57.895 0.51 0.51 0.00 6.46
48 49 2.711311 CAATGACATCAGCGGCGG 59.289 61.111 9.78 0.00 0.00 6.13
49 50 2.108514 CAATGACATCAGCGGCGGT 61.109 57.895 5.44 5.44 0.00 5.68
50 51 0.809636 CAATGACATCAGCGGCGGTA 60.810 55.000 12.74 0.49 0.00 4.02
51 52 0.810031 AATGACATCAGCGGCGGTAC 60.810 55.000 12.74 1.98 0.00 3.34
52 53 2.585247 GACATCAGCGGCGGTACC 60.585 66.667 12.74 0.16 0.00 3.34
53 54 3.075005 ACATCAGCGGCGGTACCT 61.075 61.111 12.74 0.00 35.61 3.08
54 55 1.731433 GACATCAGCGGCGGTACCTA 61.731 60.000 12.74 0.00 35.61 3.08
55 56 1.007271 CATCAGCGGCGGTACCTAG 60.007 63.158 12.74 0.00 35.61 3.02
56 57 1.455217 ATCAGCGGCGGTACCTAGT 60.455 57.895 12.74 0.00 35.61 2.57
57 58 1.735376 ATCAGCGGCGGTACCTAGTG 61.735 60.000 12.74 0.00 35.61 2.74
58 59 3.834799 AGCGGCGGTACCTAGTGC 61.835 66.667 11.06 5.60 35.61 4.40
60 61 3.511595 CGGCGGTACCTAGTGCGA 61.512 66.667 10.90 0.00 35.61 5.10
61 62 2.412112 GGCGGTACCTAGTGCGAG 59.588 66.667 10.90 0.00 34.51 5.03
62 63 2.278661 GCGGTACCTAGTGCGAGC 60.279 66.667 10.90 0.00 0.00 5.03
63 64 3.060020 GCGGTACCTAGTGCGAGCA 62.060 63.158 10.90 0.00 0.00 4.26
64 65 1.734137 CGGTACCTAGTGCGAGCAT 59.266 57.895 10.90 0.00 0.00 3.79
65 66 0.317938 CGGTACCTAGTGCGAGCATC 60.318 60.000 10.90 0.00 0.00 3.91
66 67 0.032267 GGTACCTAGTGCGAGCATCC 59.968 60.000 4.06 0.00 0.00 3.51
67 68 1.033574 GTACCTAGTGCGAGCATCCT 58.966 55.000 0.00 0.00 0.00 3.24
68 69 1.001158 GTACCTAGTGCGAGCATCCTC 60.001 57.143 0.00 0.00 34.66 3.71
69 70 0.684479 ACCTAGTGCGAGCATCCTCA 60.684 55.000 0.00 0.00 38.00 3.86
70 71 0.678395 CCTAGTGCGAGCATCCTCAT 59.322 55.000 0.00 0.00 38.00 2.90
71 72 1.889170 CCTAGTGCGAGCATCCTCATA 59.111 52.381 0.00 0.00 38.00 2.15
72 73 2.094803 CCTAGTGCGAGCATCCTCATAG 60.095 54.545 0.00 0.00 38.00 2.23
73 74 0.033228 AGTGCGAGCATCCTCATAGC 59.967 55.000 0.00 0.00 38.00 2.97
74 75 0.249615 GTGCGAGCATCCTCATAGCA 60.250 55.000 0.00 0.00 38.00 3.49
75 76 0.465287 TGCGAGCATCCTCATAGCAA 59.535 50.000 0.00 0.00 38.00 3.91
76 77 0.864455 GCGAGCATCCTCATAGCAAC 59.136 55.000 0.00 0.00 38.00 4.17
77 78 1.506493 CGAGCATCCTCATAGCAACC 58.494 55.000 0.00 0.00 38.00 3.77
78 79 1.202568 CGAGCATCCTCATAGCAACCA 60.203 52.381 0.00 0.00 38.00 3.67
79 80 2.549563 CGAGCATCCTCATAGCAACCAT 60.550 50.000 0.00 0.00 38.00 3.55
80 81 2.812591 GAGCATCCTCATAGCAACCATG 59.187 50.000 0.00 0.00 38.03 3.66
81 82 4.911160 GAGCATCCTCATAGCAACCATGC 61.911 52.174 0.00 0.00 44.14 4.06
95 96 5.565592 CAACCATGCATTTCTACTTAGCA 57.434 39.130 0.00 0.00 39.79 3.49
96 97 5.575957 CAACCATGCATTTCTACTTAGCAG 58.424 41.667 0.00 0.00 38.75 4.24
97 98 5.102953 ACCATGCATTTCTACTTAGCAGA 57.897 39.130 0.00 0.00 38.75 4.26
98 99 5.121811 ACCATGCATTTCTACTTAGCAGAG 58.878 41.667 0.00 0.00 38.75 3.35
99 100 5.104776 ACCATGCATTTCTACTTAGCAGAGA 60.105 40.000 0.00 0.00 38.75 3.10
100 101 5.819379 CCATGCATTTCTACTTAGCAGAGAA 59.181 40.000 0.00 0.00 38.75 2.87
101 102 6.238320 CCATGCATTTCTACTTAGCAGAGAAC 60.238 42.308 0.00 0.00 38.75 3.01
102 103 4.864806 TGCATTTCTACTTAGCAGAGAACG 59.135 41.667 0.00 0.00 0.00 3.95
103 104 5.103000 GCATTTCTACTTAGCAGAGAACGA 58.897 41.667 0.00 0.00 0.00 3.85
104 105 5.231147 GCATTTCTACTTAGCAGAGAACGAG 59.769 44.000 0.00 0.00 0.00 4.18
105 106 6.556212 CATTTCTACTTAGCAGAGAACGAGA 58.444 40.000 0.00 0.00 0.00 4.04
106 107 5.804692 TTCTACTTAGCAGAGAACGAGAG 57.195 43.478 0.00 0.00 0.00 3.20
125 126 2.639970 TTGTCCGCAACAATCCCTG 58.360 52.632 0.00 0.00 42.95 4.45
126 127 0.893270 TTGTCCGCAACAATCCCTGG 60.893 55.000 0.00 0.00 42.95 4.45
127 128 1.303317 GTCCGCAACAATCCCTGGT 60.303 57.895 0.00 0.00 0.00 4.00
128 129 1.303236 TCCGCAACAATCCCTGGTG 60.303 57.895 0.00 0.00 46.44 4.17
129 130 1.303236 CCGCAACAATCCCTGGTGA 60.303 57.895 0.00 0.00 46.67 4.02
130 131 1.308069 CCGCAACAATCCCTGGTGAG 61.308 60.000 0.00 0.00 46.67 3.51
131 132 1.308069 CGCAACAATCCCTGGTGAGG 61.308 60.000 0.00 0.00 46.67 3.86
132 133 1.598701 GCAACAATCCCTGGTGAGGC 61.599 60.000 0.00 0.00 46.67 4.70
133 134 0.038744 CAACAATCCCTGGTGAGGCT 59.961 55.000 0.00 0.00 46.67 4.58
134 135 0.038744 AACAATCCCTGGTGAGGCTG 59.961 55.000 0.00 0.00 38.17 4.85
135 136 0.842030 ACAATCCCTGGTGAGGCTGA 60.842 55.000 0.00 0.00 38.17 4.26
136 137 0.329261 CAATCCCTGGTGAGGCTGAA 59.671 55.000 0.00 0.00 38.17 3.02
137 138 0.622665 AATCCCTGGTGAGGCTGAAG 59.377 55.000 0.00 0.00 38.17 3.02
138 139 0.548682 ATCCCTGGTGAGGCTGAAGT 60.549 55.000 0.00 0.00 38.17 3.01
139 140 0.116342 TCCCTGGTGAGGCTGAAGTA 59.884 55.000 0.00 0.00 38.17 2.24
140 141 1.207791 CCCTGGTGAGGCTGAAGTAT 58.792 55.000 0.00 0.00 38.17 2.12
141 142 1.134280 CCCTGGTGAGGCTGAAGTATG 60.134 57.143 0.00 0.00 38.17 2.39
142 143 1.134280 CCTGGTGAGGCTGAAGTATGG 60.134 57.143 0.00 0.00 30.52 2.74
143 144 1.833630 CTGGTGAGGCTGAAGTATGGA 59.166 52.381 0.00 0.00 0.00 3.41
144 145 2.437281 CTGGTGAGGCTGAAGTATGGAT 59.563 50.000 0.00 0.00 0.00 3.41
145 146 2.435805 TGGTGAGGCTGAAGTATGGATC 59.564 50.000 0.00 0.00 0.00 3.36
146 147 2.435805 GGTGAGGCTGAAGTATGGATCA 59.564 50.000 0.00 0.00 0.00 2.92
147 148 3.072184 GGTGAGGCTGAAGTATGGATCAT 59.928 47.826 0.00 0.00 0.00 2.45
148 149 4.063689 GTGAGGCTGAAGTATGGATCATG 58.936 47.826 0.00 0.00 0.00 3.07
149 150 3.713248 TGAGGCTGAAGTATGGATCATGT 59.287 43.478 0.00 0.00 0.00 3.21
150 151 4.063689 GAGGCTGAAGTATGGATCATGTG 58.936 47.826 0.00 0.00 0.00 3.21
151 152 2.551459 GGCTGAAGTATGGATCATGTGC 59.449 50.000 0.00 0.00 0.00 4.57
152 153 3.474600 GCTGAAGTATGGATCATGTGCT 58.525 45.455 0.00 0.00 0.00 4.40
153 154 3.881688 GCTGAAGTATGGATCATGTGCTT 59.118 43.478 0.00 0.00 0.00 3.91
154 155 4.024218 GCTGAAGTATGGATCATGTGCTTC 60.024 45.833 12.07 12.07 33.56 3.86
155 156 4.454678 TGAAGTATGGATCATGTGCTTCC 58.545 43.478 14.63 4.84 32.83 3.46
156 157 4.080413 TGAAGTATGGATCATGTGCTTCCA 60.080 41.667 14.63 10.36 43.37 3.53
157 158 3.813443 AGTATGGATCATGTGCTTCCAC 58.187 45.455 10.22 0.00 42.09 4.02
158 159 3.457380 AGTATGGATCATGTGCTTCCACT 59.543 43.478 10.22 4.03 42.09 4.00
159 160 2.408271 TGGATCATGTGCTTCCACTC 57.592 50.000 0.00 0.00 42.54 3.51
160 161 1.065199 TGGATCATGTGCTTCCACTCC 60.065 52.381 0.00 0.00 42.54 3.85
161 162 1.673168 GATCATGTGCTTCCACTCCC 58.327 55.000 0.00 0.00 42.54 4.30
162 163 1.211457 GATCATGTGCTTCCACTCCCT 59.789 52.381 0.00 0.00 42.54 4.20
163 164 0.615331 TCATGTGCTTCCACTCCCTC 59.385 55.000 0.00 0.00 42.54 4.30
164 165 0.393537 CATGTGCTTCCACTCCCTCC 60.394 60.000 0.00 0.00 42.54 4.30
165 166 0.842030 ATGTGCTTCCACTCCCTCCA 60.842 55.000 0.00 0.00 42.54 3.86
166 167 1.059584 TGTGCTTCCACTCCCTCCAA 61.060 55.000 0.00 0.00 42.54 3.53
167 168 0.606673 GTGCTTCCACTCCCTCCAAC 60.607 60.000 0.00 0.00 38.93 3.77
168 169 1.059584 TGCTTCCACTCCCTCCAACA 61.060 55.000 0.00 0.00 0.00 3.33
169 170 0.110486 GCTTCCACTCCCTCCAACAA 59.890 55.000 0.00 0.00 0.00 2.83
170 171 1.884067 GCTTCCACTCCCTCCAACAAG 60.884 57.143 0.00 0.00 0.00 3.16
171 172 0.110486 TTCCACTCCCTCCAACAAGC 59.890 55.000 0.00 0.00 0.00 4.01
172 173 1.672356 CCACTCCCTCCAACAAGCG 60.672 63.158 0.00 0.00 0.00 4.68
173 174 1.371183 CACTCCCTCCAACAAGCGA 59.629 57.895 0.00 0.00 0.00 4.93
174 175 0.250295 CACTCCCTCCAACAAGCGAA 60.250 55.000 0.00 0.00 0.00 4.70
175 176 0.472471 ACTCCCTCCAACAAGCGAAA 59.528 50.000 0.00 0.00 0.00 3.46
176 177 1.133915 ACTCCCTCCAACAAGCGAAAA 60.134 47.619 0.00 0.00 0.00 2.29
177 178 1.266989 CTCCCTCCAACAAGCGAAAAC 59.733 52.381 0.00 0.00 0.00 2.43
178 179 1.028905 CCCTCCAACAAGCGAAAACA 58.971 50.000 0.00 0.00 0.00 2.83
179 180 1.407258 CCCTCCAACAAGCGAAAACAA 59.593 47.619 0.00 0.00 0.00 2.83
180 181 2.543653 CCCTCCAACAAGCGAAAACAAG 60.544 50.000 0.00 0.00 0.00 3.16
181 182 2.543653 CCTCCAACAAGCGAAAACAAGG 60.544 50.000 0.00 0.00 0.00 3.61
182 183 1.407258 TCCAACAAGCGAAAACAAGGG 59.593 47.619 0.00 0.00 0.00 3.95
183 184 1.136110 CCAACAAGCGAAAACAAGGGT 59.864 47.619 0.00 0.00 0.00 4.34
184 185 2.418060 CCAACAAGCGAAAACAAGGGTT 60.418 45.455 0.00 0.00 39.43 4.11
186 187 4.425520 CAACAAGCGAAAACAAGGGTTTA 58.574 39.130 0.00 0.00 46.20 2.01
187 188 4.036567 ACAAGCGAAAACAAGGGTTTAC 57.963 40.909 0.00 0.00 46.20 2.01
188 189 3.040099 CAAGCGAAAACAAGGGTTTACG 58.960 45.455 0.00 0.00 46.20 3.18
189 190 1.002142 AGCGAAAACAAGGGTTTACGC 60.002 47.619 12.35 12.35 46.20 4.42
190 191 1.268640 GCGAAAACAAGGGTTTACGCA 60.269 47.619 14.17 0.00 46.20 5.24
191 192 2.606065 GCGAAAACAAGGGTTTACGCAT 60.606 45.455 14.17 0.00 46.20 4.73
192 193 3.365164 GCGAAAACAAGGGTTTACGCATA 60.365 43.478 14.17 0.00 46.20 3.14
193 194 4.673320 GCGAAAACAAGGGTTTACGCATAT 60.673 41.667 14.17 0.00 46.20 1.78
194 195 5.447548 GCGAAAACAAGGGTTTACGCATATA 60.448 40.000 14.17 0.00 46.20 0.86
195 196 6.544622 CGAAAACAAGGGTTTACGCATATAA 58.455 36.000 0.00 0.00 46.20 0.98
196 197 7.022384 CGAAAACAAGGGTTTACGCATATAAA 58.978 34.615 0.00 0.00 46.20 1.40
197 198 7.537991 CGAAAACAAGGGTTTACGCATATAAAA 59.462 33.333 0.00 0.00 46.20 1.52
198 199 8.751302 AAAACAAGGGTTTACGCATATAAAAG 57.249 30.769 0.00 0.00 46.20 2.27
199 200 7.457024 AACAAGGGTTTACGCATATAAAAGT 57.543 32.000 0.00 0.00 31.83 2.66
200 201 6.848451 ACAAGGGTTTACGCATATAAAAGTG 58.152 36.000 0.00 0.00 0.00 3.16
201 202 6.431852 ACAAGGGTTTACGCATATAAAAGTGT 59.568 34.615 0.00 0.00 0.00 3.55
202 203 6.673154 AGGGTTTACGCATATAAAAGTGTC 57.327 37.500 0.00 0.00 0.00 3.67
203 204 6.174760 AGGGTTTACGCATATAAAAGTGTCA 58.825 36.000 0.00 0.00 0.00 3.58
204 205 6.655848 AGGGTTTACGCATATAAAAGTGTCAA 59.344 34.615 0.00 0.00 0.00 3.18
205 206 7.338449 AGGGTTTACGCATATAAAAGTGTCAAT 59.662 33.333 0.00 0.00 0.00 2.57
206 207 7.431084 GGGTTTACGCATATAAAAGTGTCAATG 59.569 37.037 0.00 0.00 0.00 2.82
207 208 8.178964 GGTTTACGCATATAAAAGTGTCAATGA 58.821 33.333 0.00 0.00 0.00 2.57
208 209 9.549509 GTTTACGCATATAAAAGTGTCAATGAA 57.450 29.630 0.00 0.00 0.00 2.57
210 211 9.549509 TTACGCATATAAAAGTGTCAATGAAAC 57.450 29.630 0.00 0.00 0.00 2.78
211 212 7.027161 ACGCATATAAAAGTGTCAATGAAACC 58.973 34.615 0.00 0.00 0.00 3.27
212 213 7.026562 CGCATATAAAAGTGTCAATGAAACCA 58.973 34.615 0.00 0.00 0.00 3.67
213 214 7.701924 CGCATATAAAAGTGTCAATGAAACCAT 59.298 33.333 0.00 0.00 0.00 3.55
214 215 8.810427 GCATATAAAAGTGTCAATGAAACCATG 58.190 33.333 0.00 0.00 0.00 3.66
215 216 9.859427 CATATAAAAGTGTCAATGAAACCATGT 57.141 29.630 0.00 0.00 0.00 3.21
218 219 6.959639 AAAGTGTCAATGAAACCATGTACT 57.040 33.333 0.00 0.00 0.00 2.73
219 220 6.560253 AAGTGTCAATGAAACCATGTACTC 57.440 37.500 0.00 0.00 0.00 2.59
220 221 5.003804 AGTGTCAATGAAACCATGTACTCC 58.996 41.667 0.00 0.00 0.00 3.85
221 222 4.156008 GTGTCAATGAAACCATGTACTCCC 59.844 45.833 0.00 0.00 0.00 4.30
222 223 4.042809 TGTCAATGAAACCATGTACTCCCT 59.957 41.667 0.00 0.00 0.00 4.20
223 224 4.636206 GTCAATGAAACCATGTACTCCCTC 59.364 45.833 0.00 0.00 0.00 4.30
224 225 3.933861 ATGAAACCATGTACTCCCTCC 57.066 47.619 0.00 0.00 0.00 4.30
225 226 1.553248 TGAAACCATGTACTCCCTCCG 59.447 52.381 0.00 0.00 0.00 4.63
226 227 1.553704 GAAACCATGTACTCCCTCCGT 59.446 52.381 0.00 0.00 0.00 4.69
227 228 1.192428 AACCATGTACTCCCTCCGTC 58.808 55.000 0.00 0.00 0.00 4.79
228 229 0.686769 ACCATGTACTCCCTCCGTCC 60.687 60.000 0.00 0.00 0.00 4.79
229 230 0.686441 CCATGTACTCCCTCCGTCCA 60.686 60.000 0.00 0.00 0.00 4.02
230 231 1.191535 CATGTACTCCCTCCGTCCAA 58.808 55.000 0.00 0.00 0.00 3.53
231 232 1.553248 CATGTACTCCCTCCGTCCAAA 59.447 52.381 0.00 0.00 0.00 3.28
232 233 1.719529 TGTACTCCCTCCGTCCAAAA 58.280 50.000 0.00 0.00 0.00 2.44
233 234 2.048601 TGTACTCCCTCCGTCCAAAAA 58.951 47.619 0.00 0.00 0.00 1.94
234 235 2.640826 TGTACTCCCTCCGTCCAAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
235 236 3.839490 TGTACTCCCTCCGTCCAAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
236 237 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
237 238 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
238 239 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
239 240 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
240 241 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
241 242 3.439129 CCCTCCGTCCAAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
242 243 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
243 244 4.700213 CCTCCGTCCAAAAATACTTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
244 245 5.163754 CCTCCGTCCAAAAATACTTGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
245 246 5.309638 TCCGTCCAAAAATACTTGTCATCA 58.690 37.500 0.00 0.00 0.00 3.07
246 247 5.765677 TCCGTCCAAAAATACTTGTCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
247 248 6.263392 TCCGTCCAAAAATACTTGTCATCAAA 59.737 34.615 0.00 0.00 32.87 2.69
248 249 6.920758 CCGTCCAAAAATACTTGTCATCAAAA 59.079 34.615 0.00 0.00 32.87 2.44
249 250 7.598493 CCGTCCAAAAATACTTGTCATCAAAAT 59.402 33.333 0.00 0.00 32.87 1.82
250 251 8.427012 CGTCCAAAAATACTTGTCATCAAAATG 58.573 33.333 0.00 0.00 32.87 2.32
251 252 8.711457 GTCCAAAAATACTTGTCATCAAAATGG 58.289 33.333 0.00 0.00 33.42 3.16
252 253 8.646004 TCCAAAAATACTTGTCATCAAAATGGA 58.354 29.630 0.00 0.00 33.42 3.41
253 254 9.439500 CCAAAAATACTTGTCATCAAAATGGAT 57.561 29.630 0.00 0.00 33.42 3.41
261 262 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
297 298 9.623350 GAACTAAAATACGTCTAGATACATCCC 57.377 37.037 0.00 0.00 0.00 3.85
298 299 8.120140 ACTAAAATACGTCTAGATACATCCCC 57.880 38.462 0.00 0.00 0.00 4.81
299 300 7.949006 ACTAAAATACGTCTAGATACATCCCCT 59.051 37.037 0.00 0.00 0.00 4.79
300 301 7.613551 AAAATACGTCTAGATACATCCCCTT 57.386 36.000 0.00 0.00 0.00 3.95
301 302 7.613551 AAATACGTCTAGATACATCCCCTTT 57.386 36.000 0.00 0.00 0.00 3.11
302 303 7.613551 AATACGTCTAGATACATCCCCTTTT 57.386 36.000 0.00 0.00 0.00 2.27
303 304 8.716674 AATACGTCTAGATACATCCCCTTTTA 57.283 34.615 0.00 0.00 0.00 1.52
304 305 8.896722 ATACGTCTAGATACATCCCCTTTTAT 57.103 34.615 0.00 0.00 0.00 1.40
305 306 7.613551 ACGTCTAGATACATCCCCTTTTATT 57.386 36.000 0.00 0.00 0.00 1.40
306 307 7.668492 ACGTCTAGATACATCCCCTTTTATTC 58.332 38.462 0.00 0.00 0.00 1.75
307 308 7.289317 ACGTCTAGATACATCCCCTTTTATTCA 59.711 37.037 0.00 0.00 0.00 2.57
308 309 8.314751 CGTCTAGATACATCCCCTTTTATTCAT 58.685 37.037 0.00 0.00 0.00 2.57
321 322 9.942850 CCCCTTTTATTCATTTTAATGACAAGT 57.057 29.630 4.70 0.00 44.54 3.16
329 330 9.801873 ATTCATTTTAATGACAAGTATTTCCGG 57.198 29.630 4.70 0.00 44.54 5.14
330 331 8.568676 TCATTTTAATGACAAGTATTTCCGGA 57.431 30.769 0.00 0.00 40.32 5.14
331 332 8.455682 TCATTTTAATGACAAGTATTTCCGGAC 58.544 33.333 1.83 0.00 40.32 4.79
332 333 6.411630 TTTAATGACAAGTATTTCCGGACG 57.588 37.500 1.83 0.00 0.00 4.79
333 334 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
334 335 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
335 336 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
336 337 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
337 338 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
338 339 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
339 340 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
340 341 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
347 348 1.630223 GGACGGAGGGAGTATTAGGG 58.370 60.000 0.00 0.00 0.00 3.53
362 363 3.621682 TTAGGGAATGTTGGTTTGGGT 57.378 42.857 0.00 0.00 0.00 4.51
363 364 2.009681 AGGGAATGTTGGTTTGGGTC 57.990 50.000 0.00 0.00 0.00 4.46
364 365 1.219213 AGGGAATGTTGGTTTGGGTCA 59.781 47.619 0.00 0.00 0.00 4.02
373 374 4.399934 TGTTGGTTTGGGTCAAAAGTAGTC 59.600 41.667 0.00 0.00 35.03 2.59
374 375 4.513406 TGGTTTGGGTCAAAAGTAGTCT 57.487 40.909 0.00 0.00 35.03 3.24
375 376 5.633655 TGGTTTGGGTCAAAAGTAGTCTA 57.366 39.130 0.00 0.00 35.03 2.59
377 378 6.001460 TGGTTTGGGTCAAAAGTAGTCTATG 58.999 40.000 0.00 0.00 35.03 2.23
385 386 6.127423 GGTCAAAAGTAGTCTATGGTAGAGCA 60.127 42.308 0.00 0.00 35.04 4.26
386 387 7.418025 GGTCAAAAGTAGTCTATGGTAGAGCAT 60.418 40.741 0.00 0.00 35.04 3.79
388 389 6.658188 AAAGTAGTCTATGGTAGAGCATCC 57.342 41.667 0.00 0.00 35.04 3.51
398 399 1.957177 GTAGAGCATCCGTGATCCAGA 59.043 52.381 0.00 0.00 41.64 3.86
399 400 1.489481 AGAGCATCCGTGATCCAGAA 58.511 50.000 0.00 0.00 41.64 3.02
400 401 1.833630 AGAGCATCCGTGATCCAGAAA 59.166 47.619 0.00 0.00 41.64 2.52
402 403 1.017387 GCATCCGTGATCCAGAAACC 58.983 55.000 0.00 0.00 0.00 3.27
403 404 1.668419 CATCCGTGATCCAGAAACCC 58.332 55.000 0.00 0.00 0.00 4.11
404 405 1.210478 CATCCGTGATCCAGAAACCCT 59.790 52.381 0.00 0.00 0.00 4.34
405 406 2.241281 TCCGTGATCCAGAAACCCTA 57.759 50.000 0.00 0.00 0.00 3.53
406 407 2.759355 TCCGTGATCCAGAAACCCTAT 58.241 47.619 0.00 0.00 0.00 2.57
407 408 2.698797 TCCGTGATCCAGAAACCCTATC 59.301 50.000 0.00 0.00 0.00 2.08
408 409 2.224305 CCGTGATCCAGAAACCCTATCC 60.224 54.545 0.00 0.00 0.00 2.59
409 410 2.224305 CGTGATCCAGAAACCCTATCCC 60.224 54.545 0.00 0.00 0.00 3.85
410 411 2.777692 GTGATCCAGAAACCCTATCCCA 59.222 50.000 0.00 0.00 0.00 4.37
427 428 5.574970 ATCCCAGTTCAAAACTCTTCTCT 57.425 39.130 0.00 0.00 40.46 3.10
465 466 5.195001 TGAAGTTAAAAATGTGCTCCACC 57.805 39.130 0.00 0.00 32.73 4.61
468 469 3.502211 AGTTAAAAATGTGCTCCACCTCG 59.498 43.478 0.00 0.00 32.73 4.63
469 470 2.270352 AAAAATGTGCTCCACCTCGA 57.730 45.000 0.00 0.00 32.73 4.04
471 472 2.496899 AAATGTGCTCCACCTCGATT 57.503 45.000 0.00 0.00 32.73 3.34
483 484 3.609853 CACCTCGATTTCCATTTCCTCA 58.390 45.455 0.00 0.00 0.00 3.86
515 516 6.331061 TCATGATCATCATCATCTCGACATC 58.669 40.000 4.86 0.00 45.26 3.06
518 519 6.388278 TGATCATCATCATCTCGACATCTTC 58.612 40.000 0.00 0.00 33.80 2.87
528 529 0.797249 CGACATCTTCGTCCGACACC 60.797 60.000 0.00 0.00 43.24 4.16
531 532 0.797249 CATCTTCGTCCGACACCGAC 60.797 60.000 0.00 0.00 38.22 4.79
562 563 9.573133 CGAAGAACTCCTTTTGCATTAATTTAT 57.427 29.630 0.00 0.00 34.68 1.40
568 570 8.534496 ACTCCTTTTGCATTAATTTATCAGCTT 58.466 29.630 0.00 0.00 0.00 3.74
569 571 9.374838 CTCCTTTTGCATTAATTTATCAGCTTT 57.625 29.630 0.00 0.00 0.00 3.51
586 588 4.520492 CAGCTTTGTGTTTCCATACTCCTT 59.480 41.667 0.00 0.00 0.00 3.36
590 592 6.599638 GCTTTGTGTTTCCATACTCCTTATCT 59.400 38.462 0.00 0.00 0.00 1.98
591 593 7.769044 GCTTTGTGTTTCCATACTCCTTATCTA 59.231 37.037 0.00 0.00 0.00 1.98
593 595 9.444600 TTTGTGTTTCCATACTCCTTATCTAAC 57.555 33.333 0.00 0.00 0.00 2.34
594 596 8.141298 TGTGTTTCCATACTCCTTATCTAACA 57.859 34.615 0.00 0.00 0.00 2.41
596 598 9.444600 GTGTTTCCATACTCCTTATCTAACAAA 57.555 33.333 0.00 0.00 0.00 2.83
607 609 8.908786 TCCTTATCTAACAAATCATCCACATC 57.091 34.615 0.00 0.00 0.00 3.06
612 614 6.661777 TCTAACAAATCATCCACATCCATCA 58.338 36.000 0.00 0.00 0.00 3.07
613 615 5.587388 AACAAATCATCCACATCCATCAC 57.413 39.130 0.00 0.00 0.00 3.06
617 619 6.891361 ACAAATCATCCACATCCATCACTTTA 59.109 34.615 0.00 0.00 0.00 1.85
625 627 6.069673 TCCACATCCATCACTTTACCTACAAT 60.070 38.462 0.00 0.00 0.00 2.71
627 629 7.442364 CCACATCCATCACTTTACCTACAATAG 59.558 40.741 0.00 0.00 0.00 1.73
630 632 9.784531 CATCCATCACTTTACCTACAATAGAAT 57.215 33.333 0.00 0.00 0.00 2.40
632 634 8.988060 TCCATCACTTTACCTACAATAGAATCA 58.012 33.333 0.00 0.00 0.00 2.57
633 635 9.046296 CCATCACTTTACCTACAATAGAATCAC 57.954 37.037 0.00 0.00 0.00 3.06
634 636 9.599866 CATCACTTTACCTACAATAGAATCACA 57.400 33.333 0.00 0.00 0.00 3.58
661 663 6.389622 AAAAACGCTCTCAAAAACTTTGTC 57.610 33.333 0.00 0.00 0.00 3.18
662 664 4.695217 AACGCTCTCAAAAACTTTGTCA 57.305 36.364 0.00 0.00 0.00 3.58
664 666 4.662145 ACGCTCTCAAAAACTTTGTCAAG 58.338 39.130 0.00 0.00 35.92 3.02
667 669 4.266265 GCTCTCAAAAACTTTGTCAAGCAC 59.734 41.667 13.25 0.00 32.57 4.40
677 679 2.708216 TGTCAAGCACAAAGAGGACA 57.292 45.000 0.00 0.00 33.31 4.02
678 680 2.997980 TGTCAAGCACAAAGAGGACAA 58.002 42.857 0.00 0.00 32.85 3.18
679 681 2.945008 TGTCAAGCACAAAGAGGACAAG 59.055 45.455 0.00 0.00 32.85 3.16
681 683 2.092429 TCAAGCACAAAGAGGACAAGGT 60.092 45.455 0.00 0.00 0.00 3.50
682 684 1.972872 AGCACAAAGAGGACAAGGTG 58.027 50.000 0.00 0.00 0.00 4.00
683 685 0.312102 GCACAAAGAGGACAAGGTGC 59.688 55.000 0.00 0.00 43.78 5.01
684 686 1.679139 CACAAAGAGGACAAGGTGCA 58.321 50.000 0.00 0.00 0.00 4.57
685 687 1.605710 CACAAAGAGGACAAGGTGCAG 59.394 52.381 0.00 0.00 0.00 4.41
686 688 1.212935 ACAAAGAGGACAAGGTGCAGT 59.787 47.619 0.00 0.00 0.00 4.40
687 689 1.876156 CAAAGAGGACAAGGTGCAGTC 59.124 52.381 0.00 0.00 0.00 3.51
693 695 0.033504 GACAAGGTGCAGTCCGAGAA 59.966 55.000 0.00 0.00 0.00 2.87
694 696 0.468226 ACAAGGTGCAGTCCGAGAAA 59.532 50.000 0.00 0.00 0.00 2.52
695 697 1.134220 ACAAGGTGCAGTCCGAGAAAA 60.134 47.619 0.00 0.00 0.00 2.29
697 699 0.759346 AGGTGCAGTCCGAGAAAAGT 59.241 50.000 0.00 0.00 0.00 2.66
698 700 1.149148 GGTGCAGTCCGAGAAAAGTC 58.851 55.000 0.00 0.00 0.00 3.01
699 701 1.270358 GGTGCAGTCCGAGAAAAGTCT 60.270 52.381 0.00 0.00 36.55 3.24
703 705 2.545952 GCAGTCCGAGAAAAGTCTGACA 60.546 50.000 10.88 0.00 31.96 3.58
704 706 3.862642 GCAGTCCGAGAAAAGTCTGACAT 60.863 47.826 10.88 0.00 31.96 3.06
705 707 4.618460 GCAGTCCGAGAAAAGTCTGACATA 60.618 45.833 10.88 0.00 31.96 2.29
707 709 4.082136 AGTCCGAGAAAAGTCTGACATACC 60.082 45.833 10.88 0.00 31.96 2.73
708 710 3.830178 TCCGAGAAAAGTCTGACATACCA 59.170 43.478 10.88 0.00 32.80 3.25
709 711 3.927142 CCGAGAAAAGTCTGACATACCAC 59.073 47.826 10.88 0.00 32.80 4.16
710 712 3.608506 CGAGAAAAGTCTGACATACCACG 59.391 47.826 10.88 5.47 32.80 4.94
711 713 3.926616 AGAAAAGTCTGACATACCACGG 58.073 45.455 10.88 0.00 30.83 4.94
712 714 3.323979 AGAAAAGTCTGACATACCACGGT 59.676 43.478 10.88 0.00 30.83 4.83
713 715 4.525487 AGAAAAGTCTGACATACCACGGTA 59.475 41.667 10.88 0.00 30.83 4.02
714 716 4.451629 AAAGTCTGACATACCACGGTAG 57.548 45.455 10.88 0.00 33.77 3.18
715 717 1.749634 AGTCTGACATACCACGGTAGC 59.250 52.381 10.88 0.00 33.77 3.58
716 718 1.475280 GTCTGACATACCACGGTAGCA 59.525 52.381 2.24 0.06 33.77 3.49
718 720 2.361119 TCTGACATACCACGGTAGCATC 59.639 50.000 1.86 0.57 33.77 3.91
719 721 1.411246 TGACATACCACGGTAGCATCC 59.589 52.381 1.86 0.00 33.77 3.51
727 729 4.126524 GGTAGCATCCGAGGCAAC 57.873 61.111 7.91 0.00 0.00 4.17
729 731 1.141019 GTAGCATCCGAGGCAACGA 59.859 57.895 7.91 0.00 46.39 3.85
730 732 0.872021 GTAGCATCCGAGGCAACGAG 60.872 60.000 7.91 0.00 46.39 4.18
734 899 4.670199 TCCGAGGCAACGAGGATA 57.330 55.556 5.74 0.00 41.07 2.59
735 900 2.890612 TCCGAGGCAACGAGGATAA 58.109 52.632 5.74 0.00 41.07 1.75
741 906 1.887707 GCAACGAGGATAAGCCCGG 60.888 63.158 0.00 0.00 37.37 5.73
743 908 1.688187 AACGAGGATAAGCCCGGGT 60.688 57.895 24.63 5.39 37.37 5.28
746 911 1.400530 CGAGGATAAGCCCGGGTCTT 61.401 60.000 26.41 26.41 37.37 3.01
750 915 1.120530 GATAAGCCCGGGTCTTCTCA 58.879 55.000 26.82 14.65 0.00 3.27
755 920 0.321996 GCCCGGGTCTTCTCATATCC 59.678 60.000 24.63 0.00 0.00 2.59
758 923 0.673985 CGGGTCTTCTCATATCCGCA 59.326 55.000 0.00 0.00 0.00 5.69
759 924 1.273606 CGGGTCTTCTCATATCCGCAT 59.726 52.381 0.00 0.00 0.00 4.73
761 949 2.300152 GGGTCTTCTCATATCCGCATCA 59.700 50.000 0.00 0.00 0.00 3.07
772 960 2.738013 TCCGCATCAGATATGAGCTG 57.262 50.000 0.00 0.00 34.71 4.24
773 961 1.966354 TCCGCATCAGATATGAGCTGT 59.034 47.619 0.00 0.00 34.98 4.40
779 967 6.460676 CCGCATCAGATATGAGCTGTATATGA 60.461 42.308 12.73 12.73 35.14 2.15
782 970 7.435305 CATCAGATATGAGCTGTATATGAGGG 58.565 42.308 14.65 8.57 34.42 4.30
783 971 5.896106 TCAGATATGAGCTGTATATGAGGGG 59.104 44.000 8.29 0.00 34.98 4.79
784 972 5.660417 CAGATATGAGCTGTATATGAGGGGT 59.340 44.000 0.00 0.00 0.00 4.95
785 973 5.660417 AGATATGAGCTGTATATGAGGGGTG 59.340 44.000 0.00 0.00 0.00 4.61
786 974 3.046283 TGAGCTGTATATGAGGGGTGT 57.954 47.619 0.00 0.00 0.00 4.16
787 975 2.965831 TGAGCTGTATATGAGGGGTGTC 59.034 50.000 0.00 0.00 0.00 3.67
788 976 2.965831 GAGCTGTATATGAGGGGTGTCA 59.034 50.000 0.00 0.00 0.00 3.58
789 977 2.968574 AGCTGTATATGAGGGGTGTCAG 59.031 50.000 0.00 0.00 0.00 3.51
791 979 3.243907 GCTGTATATGAGGGGTGTCAGTC 60.244 52.174 0.00 0.00 0.00 3.51
792 980 4.219115 CTGTATATGAGGGGTGTCAGTCT 58.781 47.826 0.00 0.00 0.00 3.24
793 981 3.960755 TGTATATGAGGGGTGTCAGTCTG 59.039 47.826 0.00 0.00 0.00 3.51
794 982 1.866015 TATGAGGGGTGTCAGTCTGG 58.134 55.000 0.00 0.00 0.00 3.86
796 984 1.915769 GAGGGGTGTCAGTCTGGCT 60.916 63.158 5.94 0.00 0.00 4.75
797 985 2.177594 GAGGGGTGTCAGTCTGGCTG 62.178 65.000 5.94 2.07 46.34 4.85
819 1007 6.128117 GCTGAATTTATTGTACCGGTTTGAGA 60.128 38.462 15.04 0.00 0.00 3.27
823 1011 1.886886 TTGTACCGGTTTGAGAAGCC 58.113 50.000 15.04 0.00 0.00 4.35
824 1012 1.053424 TGTACCGGTTTGAGAAGCCT 58.947 50.000 15.04 0.00 0.00 4.58
827 1015 2.335712 CCGGTTTGAGAAGCCTGGC 61.336 63.158 11.65 11.65 0.00 4.85
833 1021 1.362224 TTGAGAAGCCTGGCTAGGTT 58.638 50.000 23.69 9.16 46.41 3.50
835 1023 2.764269 TGAGAAGCCTGGCTAGGTTAT 58.236 47.619 23.69 4.51 46.41 1.89
839 1027 5.221722 TGAGAAGCCTGGCTAGGTTATAATG 60.222 44.000 23.69 0.00 46.41 1.90
845 1036 4.102524 CCTGGCTAGGTTATAATGTGACCA 59.897 45.833 8.21 0.00 38.90 4.02
847 1038 4.966168 TGGCTAGGTTATAATGTGACCAGA 59.034 41.667 0.00 0.00 38.90 3.86
855 1046 6.480320 GGTTATAATGTGACCAGACACTGATC 59.520 42.308 0.00 0.00 40.87 2.92
860 1051 2.277858 ACCAGACACTGATCGGGTC 58.722 57.895 6.47 8.99 42.76 4.46
863 1054 0.179161 CAGACACTGATCGGGTCGTC 60.179 60.000 6.47 9.36 36.68 4.20
864 1055 1.139095 GACACTGATCGGGTCGTCC 59.861 63.158 6.47 0.00 0.00 4.79
877 1068 4.564116 CGTCCGCTCGGCCGTATT 62.564 66.667 27.15 0.00 31.41 1.89
878 1069 2.202837 GTCCGCTCGGCCGTATTT 60.203 61.111 27.15 0.00 34.68 1.40
880 1071 3.269347 CCGCTCGGCCGTATTTGG 61.269 66.667 27.15 16.77 0.00 3.28
882 1073 2.237751 CGCTCGGCCGTATTTGGAG 61.238 63.158 27.15 14.44 0.00 3.86
884 1075 0.103572 GCTCGGCCGTATTTGGAGTA 59.896 55.000 27.15 0.00 0.00 2.59
887 1078 2.620115 CTCGGCCGTATTTGGAGTAGTA 59.380 50.000 27.15 0.00 0.00 1.82
890 1081 3.067180 CGGCCGTATTTGGAGTAGTAGAA 59.933 47.826 19.50 0.00 0.00 2.10
891 1082 4.261909 CGGCCGTATTTGGAGTAGTAGAAT 60.262 45.833 19.50 0.00 0.00 2.40
893 1084 5.465724 GGCCGTATTTGGAGTAGTAGAATTG 59.534 44.000 0.00 0.00 0.00 2.32
894 1085 5.050295 GCCGTATTTGGAGTAGTAGAATTGC 60.050 44.000 0.00 0.00 0.00 3.56
895 1086 6.046593 CCGTATTTGGAGTAGTAGAATTGCA 58.953 40.000 0.00 0.00 0.00 4.08
896 1087 6.201044 CCGTATTTGGAGTAGTAGAATTGCAG 59.799 42.308 0.00 0.00 0.00 4.41
901 1594 8.911918 TTTGGAGTAGTAGAATTGCAGTAAAA 57.088 30.769 0.00 0.00 0.00 1.52
903 1596 7.676947 TGGAGTAGTAGAATTGCAGTAAAACT 58.323 34.615 0.00 0.00 0.00 2.66
906 1599 9.813080 GAGTAGTAGAATTGCAGTAAAACTTTG 57.187 33.333 0.00 0.00 0.00 2.77
908 1601 7.582667 AGTAGAATTGCAGTAAAACTTTGGT 57.417 32.000 0.00 0.00 0.00 3.67
911 1604 9.177304 GTAGAATTGCAGTAAAACTTTGGTTAC 57.823 33.333 0.00 0.00 34.90 2.50
922 1615 4.477302 ACTTTGGTTACGTGTAATGCAC 57.523 40.909 0.00 0.00 44.36 4.57
928 1621 6.453926 TGGTTACGTGTAATGCACTCTATA 57.546 37.500 0.00 0.00 45.57 1.31
930 1623 6.976349 TGGTTACGTGTAATGCACTCTATAAG 59.024 38.462 0.00 0.00 45.57 1.73
980 1745 1.394917 GACATTCCACTGCATCGACAC 59.605 52.381 0.00 0.00 0.00 3.67
984 1749 1.004560 CCACTGCATCGACACAGGT 60.005 57.895 17.98 4.33 38.25 4.00
1206 1974 2.756283 CGCCTCTTCGGGTCCTCT 60.756 66.667 0.00 0.00 0.00 3.69
1251 2019 2.821366 GACCTCCTCGGCGTCGTA 60.821 66.667 10.18 0.00 37.69 3.43
1358 2129 4.416516 TCCATGGTCTGAGTAAGTCTGAA 58.583 43.478 12.58 0.00 35.11 3.02
1359 2130 4.220821 TCCATGGTCTGAGTAAGTCTGAAC 59.779 45.833 12.58 0.00 40.44 3.18
1363 2134 4.278669 TGGTCTGAGTAAGTCTGAACACTC 59.721 45.833 2.08 7.32 43.77 3.51
1364 2135 4.278669 GGTCTGAGTAAGTCTGAACACTCA 59.721 45.833 13.40 13.40 43.77 3.41
1365 2136 5.216648 GTCTGAGTAAGTCTGAACACTCAC 58.783 45.833 11.18 2.99 41.76 3.51
1366 2137 4.278669 TCTGAGTAAGTCTGAACACTCACC 59.721 45.833 11.18 0.00 41.76 4.02
1367 2138 4.215908 TGAGTAAGTCTGAACACTCACCT 58.784 43.478 11.18 0.00 41.76 4.00
1368 2139 4.649674 TGAGTAAGTCTGAACACTCACCTT 59.350 41.667 11.18 0.00 41.76 3.50
1369 2140 5.128827 TGAGTAAGTCTGAACACTCACCTTT 59.871 40.000 11.18 0.00 41.76 3.11
1624 2951 0.250513 CTTCCTCCACCTTCTTCGGG 59.749 60.000 0.00 0.00 0.00 5.14
2071 3398 1.512310 CGTCGAGACCTTCACGCTC 60.512 63.158 0.00 0.00 30.66 5.03
2188 3515 2.056223 CGTGGTCCCGGACACCTAT 61.056 63.158 19.43 0.00 34.66 2.57
2200 3527 2.419297 GGACACCTATCTGCTCAACCTG 60.419 54.545 0.00 0.00 0.00 4.00
2257 3584 2.430367 GCCCTCAAGGTGTTCCGT 59.570 61.111 0.00 0.00 38.26 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.929625 AGATGAACCGTATGGAGAGAATATG 58.070 40.000 8.33 0.00 39.21 1.78
6 7 4.895889 TGAGATGAACCGTATGGAGAGAAT 59.104 41.667 8.33 0.00 39.21 2.40
7 8 4.098044 GTGAGATGAACCGTATGGAGAGAA 59.902 45.833 8.33 0.00 39.21 2.87
8 9 3.632604 GTGAGATGAACCGTATGGAGAGA 59.367 47.826 8.33 0.00 39.21 3.10
9 10 3.243569 GGTGAGATGAACCGTATGGAGAG 60.244 52.174 8.33 0.00 39.21 3.20
10 11 2.693591 GGTGAGATGAACCGTATGGAGA 59.306 50.000 8.33 0.00 39.21 3.71
11 12 2.430694 TGGTGAGATGAACCGTATGGAG 59.569 50.000 8.33 0.00 40.86 3.86
12 13 2.462723 TGGTGAGATGAACCGTATGGA 58.537 47.619 8.33 0.00 40.86 3.41
13 14 2.979814 TGGTGAGATGAACCGTATGG 57.020 50.000 0.00 0.00 40.86 2.74
14 15 4.271049 GTCATTGGTGAGATGAACCGTATG 59.729 45.833 0.00 0.00 40.86 2.39
15 16 4.081142 TGTCATTGGTGAGATGAACCGTAT 60.081 41.667 0.00 0.00 40.86 3.06
16 17 3.259625 TGTCATTGGTGAGATGAACCGTA 59.740 43.478 0.00 0.00 40.86 4.02
17 18 2.038426 TGTCATTGGTGAGATGAACCGT 59.962 45.455 0.00 0.00 40.86 4.83
18 19 2.698803 TGTCATTGGTGAGATGAACCG 58.301 47.619 0.00 0.00 40.86 4.44
19 20 4.264253 TGATGTCATTGGTGAGATGAACC 58.736 43.478 0.00 0.00 38.36 3.62
20 21 4.201891 GCTGATGTCATTGGTGAGATGAAC 60.202 45.833 0.00 0.00 38.36 3.18
21 22 3.943381 GCTGATGTCATTGGTGAGATGAA 59.057 43.478 0.00 0.00 38.36 2.57
22 23 3.538591 GCTGATGTCATTGGTGAGATGA 58.461 45.455 0.00 0.00 38.36 2.92
23 24 2.287103 CGCTGATGTCATTGGTGAGATG 59.713 50.000 0.00 0.00 38.36 2.90
24 25 2.558378 CGCTGATGTCATTGGTGAGAT 58.442 47.619 0.00 0.00 40.70 2.75
25 26 1.405933 CCGCTGATGTCATTGGTGAGA 60.406 52.381 0.00 0.00 34.36 3.27
26 27 1.012086 CCGCTGATGTCATTGGTGAG 58.988 55.000 0.00 0.00 34.36 3.51
27 28 1.026182 GCCGCTGATGTCATTGGTGA 61.026 55.000 0.00 0.00 0.00 4.02
28 29 1.430632 GCCGCTGATGTCATTGGTG 59.569 57.895 0.00 0.00 0.00 4.17
29 30 2.108514 CGCCGCTGATGTCATTGGT 61.109 57.895 0.00 0.00 0.00 3.67
30 31 2.711311 CGCCGCTGATGTCATTGG 59.289 61.111 0.00 0.00 0.00 3.16
31 32 0.809636 TACCGCCGCTGATGTCATTG 60.810 55.000 0.00 0.00 0.00 2.82
32 33 0.810031 GTACCGCCGCTGATGTCATT 60.810 55.000 0.00 0.00 0.00 2.57
33 34 1.227263 GTACCGCCGCTGATGTCAT 60.227 57.895 0.00 0.00 0.00 3.06
34 35 2.183300 GTACCGCCGCTGATGTCA 59.817 61.111 0.00 0.00 0.00 3.58
35 36 1.731433 TAGGTACCGCCGCTGATGTC 61.731 60.000 6.18 0.00 43.70 3.06
36 37 1.735376 CTAGGTACCGCCGCTGATGT 61.735 60.000 6.18 0.00 43.70 3.06
37 38 1.007271 CTAGGTACCGCCGCTGATG 60.007 63.158 6.18 0.00 43.70 3.07
38 39 1.455217 ACTAGGTACCGCCGCTGAT 60.455 57.895 6.18 0.00 43.70 2.90
39 40 2.044650 ACTAGGTACCGCCGCTGA 60.045 61.111 6.18 0.00 43.70 4.26
40 41 2.104331 CACTAGGTACCGCCGCTG 59.896 66.667 6.18 0.00 43.70 5.18
41 42 3.834799 GCACTAGGTACCGCCGCT 61.835 66.667 6.18 0.00 43.70 5.52
43 44 3.465296 CTCGCACTAGGTACCGCCG 62.465 68.421 6.18 6.34 43.70 6.46
44 45 2.412112 CTCGCACTAGGTACCGCC 59.588 66.667 6.18 0.00 37.58 6.13
45 46 2.278661 GCTCGCACTAGGTACCGC 60.279 66.667 6.18 2.56 0.00 5.68
46 47 0.317938 GATGCTCGCACTAGGTACCG 60.318 60.000 6.18 0.00 0.00 4.02
47 48 0.032267 GGATGCTCGCACTAGGTACC 59.968 60.000 2.73 2.73 0.00 3.34
48 49 1.001158 GAGGATGCTCGCACTAGGTAC 60.001 57.143 0.00 0.00 0.00 3.34
49 50 1.319541 GAGGATGCTCGCACTAGGTA 58.680 55.000 0.00 0.00 0.00 3.08
50 51 0.684479 TGAGGATGCTCGCACTAGGT 60.684 55.000 9.88 0.00 0.00 3.08
51 52 0.678395 ATGAGGATGCTCGCACTAGG 59.322 55.000 9.88 0.00 0.00 3.02
52 53 2.670789 GCTATGAGGATGCTCGCACTAG 60.671 54.545 9.88 8.68 0.00 2.57
53 54 1.270826 GCTATGAGGATGCTCGCACTA 59.729 52.381 9.88 0.00 0.00 2.74
54 55 0.033228 GCTATGAGGATGCTCGCACT 59.967 55.000 9.88 0.00 0.00 4.40
55 56 0.249615 TGCTATGAGGATGCTCGCAC 60.250 55.000 9.88 0.00 0.00 5.34
56 57 0.465287 TTGCTATGAGGATGCTCGCA 59.535 50.000 9.88 10.19 0.00 5.10
57 58 0.864455 GTTGCTATGAGGATGCTCGC 59.136 55.000 9.88 7.63 0.00 5.03
58 59 1.202568 TGGTTGCTATGAGGATGCTCG 60.203 52.381 9.88 0.00 0.00 5.03
59 60 2.627515 TGGTTGCTATGAGGATGCTC 57.372 50.000 7.39 7.39 0.00 4.26
60 61 2.860009 CATGGTTGCTATGAGGATGCT 58.140 47.619 0.00 0.00 0.00 3.79
61 62 1.268899 GCATGGTTGCTATGAGGATGC 59.731 52.381 0.00 0.00 45.77 3.91
73 74 5.355071 TCTGCTAAGTAGAAATGCATGGTTG 59.645 40.000 0.00 0.00 33.02 3.77
74 75 5.500234 TCTGCTAAGTAGAAATGCATGGTT 58.500 37.500 0.00 0.00 33.02 3.67
75 76 5.102953 TCTGCTAAGTAGAAATGCATGGT 57.897 39.130 0.00 0.00 33.02 3.55
76 77 5.363101 TCTCTGCTAAGTAGAAATGCATGG 58.637 41.667 0.00 0.00 33.02 3.66
77 78 6.509199 CGTTCTCTGCTAAGTAGAAATGCATG 60.509 42.308 0.00 0.00 31.41 4.06
78 79 5.521735 CGTTCTCTGCTAAGTAGAAATGCAT 59.478 40.000 0.00 0.00 31.41 3.96
79 80 4.864806 CGTTCTCTGCTAAGTAGAAATGCA 59.135 41.667 0.00 0.00 31.41 3.96
80 81 5.103000 TCGTTCTCTGCTAAGTAGAAATGC 58.897 41.667 0.00 0.00 31.41 3.56
81 82 6.556212 TCTCGTTCTCTGCTAAGTAGAAATG 58.444 40.000 0.00 0.00 31.41 2.32
82 83 6.376018 ACTCTCGTTCTCTGCTAAGTAGAAAT 59.624 38.462 0.00 0.00 31.41 2.17
83 84 5.706369 ACTCTCGTTCTCTGCTAAGTAGAAA 59.294 40.000 0.00 0.00 31.41 2.52
84 85 5.247084 ACTCTCGTTCTCTGCTAAGTAGAA 58.753 41.667 0.00 0.00 0.00 2.10
85 86 4.834534 ACTCTCGTTCTCTGCTAAGTAGA 58.165 43.478 0.00 0.00 0.00 2.59
86 87 5.106475 ACAACTCTCGTTCTCTGCTAAGTAG 60.106 44.000 0.00 0.00 0.00 2.57
87 88 4.760715 ACAACTCTCGTTCTCTGCTAAGTA 59.239 41.667 0.00 0.00 0.00 2.24
88 89 3.570550 ACAACTCTCGTTCTCTGCTAAGT 59.429 43.478 0.00 0.00 0.00 2.24
89 90 4.162812 GACAACTCTCGTTCTCTGCTAAG 58.837 47.826 0.00 0.00 0.00 2.18
90 91 3.057456 GGACAACTCTCGTTCTCTGCTAA 60.057 47.826 0.00 0.00 0.00 3.09
91 92 2.488545 GGACAACTCTCGTTCTCTGCTA 59.511 50.000 0.00 0.00 0.00 3.49
92 93 1.271102 GGACAACTCTCGTTCTCTGCT 59.729 52.381 0.00 0.00 0.00 4.24
93 94 1.704070 GGACAACTCTCGTTCTCTGC 58.296 55.000 0.00 0.00 0.00 4.26
94 95 1.970447 CGGACAACTCTCGTTCTCTG 58.030 55.000 0.00 0.00 0.00 3.35
95 96 0.241481 GCGGACAACTCTCGTTCTCT 59.759 55.000 0.00 0.00 0.00 3.10
96 97 0.039437 TGCGGACAACTCTCGTTCTC 60.039 55.000 0.00 0.00 0.00 2.87
97 98 0.387929 TTGCGGACAACTCTCGTTCT 59.612 50.000 0.00 0.00 0.00 3.01
98 99 2.895039 TTGCGGACAACTCTCGTTC 58.105 52.632 0.00 0.00 0.00 3.95
108 109 1.303236 CCAGGGATTGTTGCGGACA 60.303 57.895 0.00 0.00 36.19 4.02
109 110 1.303317 ACCAGGGATTGTTGCGGAC 60.303 57.895 0.00 0.00 0.00 4.79
110 111 1.303236 CACCAGGGATTGTTGCGGA 60.303 57.895 0.00 0.00 0.00 5.54
111 112 1.303236 TCACCAGGGATTGTTGCGG 60.303 57.895 0.00 0.00 0.00 5.69
112 113 1.308069 CCTCACCAGGGATTGTTGCG 61.308 60.000 0.00 0.00 35.89 4.85
113 114 1.598701 GCCTCACCAGGGATTGTTGC 61.599 60.000 0.00 0.00 40.75 4.17
114 115 0.038744 AGCCTCACCAGGGATTGTTG 59.961 55.000 0.00 0.00 40.75 3.33
115 116 0.038744 CAGCCTCACCAGGGATTGTT 59.961 55.000 0.00 0.00 40.75 2.83
116 117 0.842030 TCAGCCTCACCAGGGATTGT 60.842 55.000 0.00 0.00 40.75 2.71
117 118 0.329261 TTCAGCCTCACCAGGGATTG 59.671 55.000 0.00 0.00 40.75 2.67
118 119 0.622665 CTTCAGCCTCACCAGGGATT 59.377 55.000 0.00 0.00 40.75 3.01
119 120 0.548682 ACTTCAGCCTCACCAGGGAT 60.549 55.000 0.00 0.00 40.75 3.85
120 121 0.116342 TACTTCAGCCTCACCAGGGA 59.884 55.000 0.00 0.00 40.75 4.20
121 122 1.134280 CATACTTCAGCCTCACCAGGG 60.134 57.143 0.00 0.00 40.75 4.45
122 123 1.134280 CCATACTTCAGCCTCACCAGG 60.134 57.143 0.00 0.00 43.82 4.45
123 124 1.833630 TCCATACTTCAGCCTCACCAG 59.166 52.381 0.00 0.00 0.00 4.00
124 125 1.951209 TCCATACTTCAGCCTCACCA 58.049 50.000 0.00 0.00 0.00 4.17
125 126 2.435805 TGATCCATACTTCAGCCTCACC 59.564 50.000 0.00 0.00 0.00 4.02
126 127 3.827008 TGATCCATACTTCAGCCTCAC 57.173 47.619 0.00 0.00 0.00 3.51
127 128 3.713248 ACATGATCCATACTTCAGCCTCA 59.287 43.478 0.00 0.00 0.00 3.86
128 129 4.063689 CACATGATCCATACTTCAGCCTC 58.936 47.826 0.00 0.00 0.00 4.70
129 130 3.746751 GCACATGATCCATACTTCAGCCT 60.747 47.826 0.00 0.00 0.00 4.58
130 131 2.551459 GCACATGATCCATACTTCAGCC 59.449 50.000 0.00 0.00 0.00 4.85
131 132 3.474600 AGCACATGATCCATACTTCAGC 58.525 45.455 0.00 0.00 0.00 4.26
132 133 4.514441 GGAAGCACATGATCCATACTTCAG 59.486 45.833 0.00 0.00 33.28 3.02
133 134 4.080413 TGGAAGCACATGATCCATACTTCA 60.080 41.667 0.00 0.00 38.30 3.02
134 135 4.274459 GTGGAAGCACATGATCCATACTTC 59.726 45.833 14.18 8.90 44.55 3.01
135 136 4.080129 AGTGGAAGCACATGATCCATACTT 60.080 41.667 14.18 1.99 44.55 2.24
136 137 3.457380 AGTGGAAGCACATGATCCATACT 59.543 43.478 14.18 7.68 44.55 2.12
137 138 3.812053 GAGTGGAAGCACATGATCCATAC 59.188 47.826 14.18 9.56 44.55 2.39
138 139 3.181451 GGAGTGGAAGCACATGATCCATA 60.181 47.826 14.18 0.00 44.55 2.74
139 140 2.422519 GGAGTGGAAGCACATGATCCAT 60.423 50.000 14.18 6.80 44.55 3.41
140 141 1.065199 GGAGTGGAAGCACATGATCCA 60.065 52.381 0.00 4.96 40.84 3.41
141 142 1.673168 GGAGTGGAAGCACATGATCC 58.327 55.000 0.00 2.16 0.00 3.36
142 143 1.211457 AGGGAGTGGAAGCACATGATC 59.789 52.381 0.00 0.00 0.00 2.92
143 144 1.211457 GAGGGAGTGGAAGCACATGAT 59.789 52.381 0.00 0.00 0.00 2.45
144 145 0.615331 GAGGGAGTGGAAGCACATGA 59.385 55.000 0.00 0.00 0.00 3.07
145 146 0.393537 GGAGGGAGTGGAAGCACATG 60.394 60.000 0.00 0.00 0.00 3.21
146 147 0.842030 TGGAGGGAGTGGAAGCACAT 60.842 55.000 0.00 0.00 0.00 3.21
147 148 1.059584 TTGGAGGGAGTGGAAGCACA 61.060 55.000 0.00 0.00 0.00 4.57
148 149 0.606673 GTTGGAGGGAGTGGAAGCAC 60.607 60.000 0.00 0.00 0.00 4.40
149 150 1.059584 TGTTGGAGGGAGTGGAAGCA 61.060 55.000 0.00 0.00 0.00 3.91
150 151 0.110486 TTGTTGGAGGGAGTGGAAGC 59.890 55.000 0.00 0.00 0.00 3.86
151 152 1.884067 GCTTGTTGGAGGGAGTGGAAG 60.884 57.143 0.00 0.00 0.00 3.46
152 153 0.110486 GCTTGTTGGAGGGAGTGGAA 59.890 55.000 0.00 0.00 0.00 3.53
153 154 1.761174 GCTTGTTGGAGGGAGTGGA 59.239 57.895 0.00 0.00 0.00 4.02
154 155 1.672356 CGCTTGTTGGAGGGAGTGG 60.672 63.158 0.00 0.00 0.00 4.00
155 156 0.250295 TTCGCTTGTTGGAGGGAGTG 60.250 55.000 0.00 0.00 39.39 3.51
156 157 0.472471 TTTCGCTTGTTGGAGGGAGT 59.528 50.000 0.00 0.00 39.39 3.85
157 158 1.266989 GTTTTCGCTTGTTGGAGGGAG 59.733 52.381 0.00 0.00 39.39 4.30
158 159 1.314730 GTTTTCGCTTGTTGGAGGGA 58.685 50.000 0.00 0.00 36.90 4.20
159 160 1.028905 TGTTTTCGCTTGTTGGAGGG 58.971 50.000 0.00 0.00 0.00 4.30
160 161 2.543653 CCTTGTTTTCGCTTGTTGGAGG 60.544 50.000 0.00 0.00 0.00 4.30
161 162 2.543653 CCCTTGTTTTCGCTTGTTGGAG 60.544 50.000 0.00 0.00 0.00 3.86
162 163 1.407258 CCCTTGTTTTCGCTTGTTGGA 59.593 47.619 0.00 0.00 0.00 3.53
163 164 1.136110 ACCCTTGTTTTCGCTTGTTGG 59.864 47.619 0.00 0.00 0.00 3.77
164 165 2.577449 ACCCTTGTTTTCGCTTGTTG 57.423 45.000 0.00 0.00 0.00 3.33
165 166 3.603158 AAACCCTTGTTTTCGCTTGTT 57.397 38.095 0.00 0.00 41.92 2.83
166 167 3.487879 CGTAAACCCTTGTTTTCGCTTGT 60.488 43.478 4.69 0.00 44.36 3.16
167 168 3.040099 CGTAAACCCTTGTTTTCGCTTG 58.960 45.455 4.69 0.00 44.36 4.01
168 169 3.343380 CGTAAACCCTTGTTTTCGCTT 57.657 42.857 4.69 0.00 44.36 4.68
172 173 8.745464 TTTTATATGCGTAAACCCTTGTTTTC 57.255 30.769 0.00 0.00 41.92 2.29
173 174 8.361889 ACTTTTATATGCGTAAACCCTTGTTTT 58.638 29.630 0.00 0.00 41.92 2.43
174 175 7.810759 CACTTTTATATGCGTAAACCCTTGTTT 59.189 33.333 0.00 0.00 46.22 2.83
175 176 7.040271 ACACTTTTATATGCGTAAACCCTTGTT 60.040 33.333 0.00 0.00 35.82 2.83
176 177 6.431852 ACACTTTTATATGCGTAAACCCTTGT 59.568 34.615 0.00 0.00 0.00 3.16
177 178 6.848451 ACACTTTTATATGCGTAAACCCTTG 58.152 36.000 0.00 0.00 0.00 3.61
178 179 6.655848 TGACACTTTTATATGCGTAAACCCTT 59.344 34.615 0.00 0.00 0.00 3.95
179 180 6.174760 TGACACTTTTATATGCGTAAACCCT 58.825 36.000 0.00 0.00 0.00 4.34
180 181 6.425577 TGACACTTTTATATGCGTAAACCC 57.574 37.500 0.00 0.00 0.00 4.11
181 182 8.178964 TCATTGACACTTTTATATGCGTAAACC 58.821 33.333 0.00 0.00 0.00 3.27
182 183 9.549509 TTCATTGACACTTTTATATGCGTAAAC 57.450 29.630 0.00 0.00 0.00 2.01
184 185 9.549509 GTTTCATTGACACTTTTATATGCGTAA 57.450 29.630 0.00 0.00 0.00 3.18
185 186 8.178964 GGTTTCATTGACACTTTTATATGCGTA 58.821 33.333 3.17 0.00 0.00 4.42
186 187 7.027161 GGTTTCATTGACACTTTTATATGCGT 58.973 34.615 3.17 0.00 0.00 5.24
187 188 7.026562 TGGTTTCATTGACACTTTTATATGCG 58.973 34.615 3.17 0.00 0.00 4.73
188 189 8.810427 CATGGTTTCATTGACACTTTTATATGC 58.190 33.333 3.17 0.00 0.00 3.14
189 190 9.859427 ACATGGTTTCATTGACACTTTTATATG 57.141 29.630 0.00 0.00 0.00 1.78
192 193 9.077885 AGTACATGGTTTCATTGACACTTTTAT 57.922 29.630 0.00 0.00 0.00 1.40
193 194 8.458573 AGTACATGGTTTCATTGACACTTTTA 57.541 30.769 0.00 0.00 0.00 1.52
194 195 7.346751 AGTACATGGTTTCATTGACACTTTT 57.653 32.000 0.00 0.00 0.00 2.27
195 196 6.016276 GGAGTACATGGTTTCATTGACACTTT 60.016 38.462 0.00 0.00 0.00 2.66
196 197 5.473504 GGAGTACATGGTTTCATTGACACTT 59.526 40.000 0.00 0.00 0.00 3.16
197 198 5.003804 GGAGTACATGGTTTCATTGACACT 58.996 41.667 0.00 0.00 0.00 3.55
198 199 4.156008 GGGAGTACATGGTTTCATTGACAC 59.844 45.833 0.00 0.00 0.00 3.67
199 200 4.042809 AGGGAGTACATGGTTTCATTGACA 59.957 41.667 0.00 0.00 0.00 3.58
200 201 4.589908 AGGGAGTACATGGTTTCATTGAC 58.410 43.478 0.00 0.00 0.00 3.18
201 202 4.324254 GGAGGGAGTACATGGTTTCATTGA 60.324 45.833 0.00 0.00 0.00 2.57
202 203 3.947834 GGAGGGAGTACATGGTTTCATTG 59.052 47.826 0.00 0.00 0.00 2.82
203 204 3.370527 CGGAGGGAGTACATGGTTTCATT 60.371 47.826 0.00 0.00 0.00 2.57
204 205 2.170607 CGGAGGGAGTACATGGTTTCAT 59.829 50.000 0.00 0.00 0.00 2.57
205 206 1.553248 CGGAGGGAGTACATGGTTTCA 59.447 52.381 0.00 0.00 0.00 2.69
206 207 1.553704 ACGGAGGGAGTACATGGTTTC 59.446 52.381 0.00 0.00 0.00 2.78
207 208 1.553704 GACGGAGGGAGTACATGGTTT 59.446 52.381 0.00 0.00 0.00 3.27
208 209 1.192428 GACGGAGGGAGTACATGGTT 58.808 55.000 0.00 0.00 0.00 3.67
209 210 0.686769 GGACGGAGGGAGTACATGGT 60.687 60.000 0.00 0.00 0.00 3.55
210 211 0.686441 TGGACGGAGGGAGTACATGG 60.686 60.000 0.00 0.00 0.00 3.66
211 212 1.191535 TTGGACGGAGGGAGTACATG 58.808 55.000 0.00 0.00 31.71 3.21
212 213 1.946984 TTTGGACGGAGGGAGTACAT 58.053 50.000 0.00 0.00 31.71 2.29
213 214 1.719529 TTTTGGACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
214 215 2.845363 TTTTTGGACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
215 216 4.098894 AGTATTTTTGGACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
216 217 2.910977 AGTATTTTTGGACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
217 218 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
218 219 3.073356 ACAAGTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 32.32 4.20
219 220 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
220 221 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
221 222 5.411361 TGATGACAAGTATTTTTGGACGGAG 59.589 40.000 0.00 0.00 32.32 4.63
222 223 5.309638 TGATGACAAGTATTTTTGGACGGA 58.690 37.500 0.00 0.00 32.32 4.69
223 224 5.621197 TGATGACAAGTATTTTTGGACGG 57.379 39.130 0.00 0.00 32.32 4.79
224 225 7.922505 TTTTGATGACAAGTATTTTTGGACG 57.077 32.000 0.00 0.00 37.32 4.79
225 226 8.711457 CCATTTTGATGACAAGTATTTTTGGAC 58.289 33.333 0.00 0.00 37.32 4.02
226 227 8.646004 TCCATTTTGATGACAAGTATTTTTGGA 58.354 29.630 0.00 0.00 37.32 3.53
227 228 8.830201 TCCATTTTGATGACAAGTATTTTTGG 57.170 30.769 0.00 0.00 37.32 3.28
235 236 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
271 272 9.623350 GGGATGTATCTAGACGTATTTTAGTTC 57.377 37.037 0.00 0.00 0.00 3.01
272 273 8.583296 GGGGATGTATCTAGACGTATTTTAGTT 58.417 37.037 0.00 0.00 0.00 2.24
273 274 7.949006 AGGGGATGTATCTAGACGTATTTTAGT 59.051 37.037 0.00 0.00 0.00 2.24
274 275 8.350852 AGGGGATGTATCTAGACGTATTTTAG 57.649 38.462 0.00 0.00 0.00 1.85
275 276 8.716674 AAGGGGATGTATCTAGACGTATTTTA 57.283 34.615 0.00 0.00 0.00 1.52
276 277 7.613551 AAGGGGATGTATCTAGACGTATTTT 57.386 36.000 0.00 0.00 0.00 1.82
277 278 7.613551 AAAGGGGATGTATCTAGACGTATTT 57.386 36.000 0.00 0.00 0.00 1.40
278 279 7.613551 AAAAGGGGATGTATCTAGACGTATT 57.386 36.000 0.00 0.00 0.00 1.89
279 280 8.896722 ATAAAAGGGGATGTATCTAGACGTAT 57.103 34.615 0.00 0.00 0.00 3.06
280 281 8.716674 AATAAAAGGGGATGTATCTAGACGTA 57.283 34.615 0.00 0.00 0.00 3.57
281 282 7.289317 TGAATAAAAGGGGATGTATCTAGACGT 59.711 37.037 0.00 0.00 0.00 4.34
282 283 7.667557 TGAATAAAAGGGGATGTATCTAGACG 58.332 38.462 0.00 0.00 0.00 4.18
295 296 9.942850 ACTTGTCATTAAAATGAATAAAAGGGG 57.057 29.630 6.95 0.00 46.13 4.79
303 304 9.801873 CCGGAAATACTTGTCATTAAAATGAAT 57.198 29.630 6.95 0.00 46.13 2.57
304 305 9.015367 TCCGGAAATACTTGTCATTAAAATGAA 57.985 29.630 0.00 0.00 46.13 2.57
305 306 8.455682 GTCCGGAAATACTTGTCATTAAAATGA 58.544 33.333 5.23 1.23 42.78 2.57
306 307 7.428183 CGTCCGGAAATACTTGTCATTAAAATG 59.572 37.037 5.23 0.00 37.75 2.32
307 308 7.414762 CCGTCCGGAAATACTTGTCATTAAAAT 60.415 37.037 5.23 0.00 37.50 1.82
308 309 6.128227 CCGTCCGGAAATACTTGTCATTAAAA 60.128 38.462 5.23 0.00 37.50 1.52
309 310 5.352016 CCGTCCGGAAATACTTGTCATTAAA 59.648 40.000 5.23 0.00 37.50 1.52
310 311 4.871557 CCGTCCGGAAATACTTGTCATTAA 59.128 41.667 5.23 0.00 37.50 1.40
311 312 4.160065 TCCGTCCGGAAATACTTGTCATTA 59.840 41.667 5.23 0.00 42.05 1.90
312 313 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
313 314 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
314 315 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
315 316 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
316 317 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
317 318 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
318 319 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
319 320 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
320 321 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
321 322 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
322 323 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
323 324 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
324 325 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
325 326 0.846015 TAATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
326 327 1.245732 CTAATACTCCCTCCGTCCGG 58.754 60.000 0.00 0.00 0.00 5.14
327 328 1.245732 CCTAATACTCCCTCCGTCCG 58.754 60.000 0.00 0.00 0.00 4.79
328 329 1.146566 TCCCTAATACTCCCTCCGTCC 59.853 57.143 0.00 0.00 0.00 4.79
329 330 2.671896 TCCCTAATACTCCCTCCGTC 57.328 55.000 0.00 0.00 0.00 4.79
330 331 3.240302 CATTCCCTAATACTCCCTCCGT 58.760 50.000 0.00 0.00 0.00 4.69
331 332 3.240302 ACATTCCCTAATACTCCCTCCG 58.760 50.000 0.00 0.00 0.00 4.63
332 333 4.202472 CCAACATTCCCTAATACTCCCTCC 60.202 50.000 0.00 0.00 0.00 4.30
333 334 4.412528 ACCAACATTCCCTAATACTCCCTC 59.587 45.833 0.00 0.00 0.00 4.30
334 335 4.380791 ACCAACATTCCCTAATACTCCCT 58.619 43.478 0.00 0.00 0.00 4.20
335 336 4.790718 ACCAACATTCCCTAATACTCCC 57.209 45.455 0.00 0.00 0.00 4.30
336 337 5.359860 CCAAACCAACATTCCCTAATACTCC 59.640 44.000 0.00 0.00 0.00 3.85
337 338 5.359860 CCCAAACCAACATTCCCTAATACTC 59.640 44.000 0.00 0.00 0.00 2.59
338 339 5.222463 ACCCAAACCAACATTCCCTAATACT 60.222 40.000 0.00 0.00 0.00 2.12
339 340 5.020795 ACCCAAACCAACATTCCCTAATAC 58.979 41.667 0.00 0.00 0.00 1.89
340 341 5.222358 TGACCCAAACCAACATTCCCTAATA 60.222 40.000 0.00 0.00 0.00 0.98
347 348 4.765273 ACTTTTGACCCAAACCAACATTC 58.235 39.130 0.00 0.00 32.79 2.67
362 363 7.201920 GGATGCTCTACCATAGACTACTTTTGA 60.202 40.741 0.00 0.00 0.00 2.69
363 364 6.926272 GGATGCTCTACCATAGACTACTTTTG 59.074 42.308 0.00 0.00 0.00 2.44
364 365 6.239064 CGGATGCTCTACCATAGACTACTTTT 60.239 42.308 0.00 0.00 0.00 2.27
373 374 3.119316 GGATCACGGATGCTCTACCATAG 60.119 52.174 0.00 0.00 0.00 2.23
374 375 2.826128 GGATCACGGATGCTCTACCATA 59.174 50.000 0.00 0.00 0.00 2.74
375 376 1.620819 GGATCACGGATGCTCTACCAT 59.379 52.381 0.00 0.00 0.00 3.55
377 378 1.000283 CTGGATCACGGATGCTCTACC 60.000 57.143 0.00 0.00 31.64 3.18
385 386 1.584724 AGGGTTTCTGGATCACGGAT 58.415 50.000 0.00 0.00 33.61 4.18
386 387 2.241281 TAGGGTTTCTGGATCACGGA 57.759 50.000 0.00 0.00 0.00 4.69
388 389 2.224305 GGGATAGGGTTTCTGGATCACG 60.224 54.545 0.00 0.00 0.00 4.35
398 399 5.074746 AGTTTTGAACTGGGATAGGGTTT 57.925 39.130 0.00 0.00 41.01 3.27
399 400 4.354087 AGAGTTTTGAACTGGGATAGGGTT 59.646 41.667 0.00 0.00 43.03 4.11
400 401 3.916989 AGAGTTTTGAACTGGGATAGGGT 59.083 43.478 0.00 0.00 43.03 4.34
402 403 5.810095 AGAAGAGTTTTGAACTGGGATAGG 58.190 41.667 0.00 0.00 43.03 2.57
403 404 6.706295 AGAGAAGAGTTTTGAACTGGGATAG 58.294 40.000 0.00 0.00 43.03 2.08
404 405 6.498651 AGAGAGAAGAGTTTTGAACTGGGATA 59.501 38.462 0.00 0.00 43.03 2.59
405 406 5.309282 AGAGAGAAGAGTTTTGAACTGGGAT 59.691 40.000 0.00 0.00 43.03 3.85
406 407 4.656112 AGAGAGAAGAGTTTTGAACTGGGA 59.344 41.667 0.00 0.00 43.03 4.37
407 408 4.967036 AGAGAGAAGAGTTTTGAACTGGG 58.033 43.478 0.00 0.00 43.03 4.45
408 409 6.540189 TCAAAGAGAGAAGAGTTTTGAACTGG 59.460 38.462 0.00 0.00 43.03 4.00
409 410 7.545362 TCAAAGAGAGAAGAGTTTTGAACTG 57.455 36.000 0.00 0.00 43.03 3.16
410 411 8.744568 AATCAAAGAGAGAAGAGTTTTGAACT 57.255 30.769 2.57 0.00 46.38 3.01
439 440 5.596361 TGGAGCACATTTTTAACTTCAAGGA 59.404 36.000 0.00 0.00 0.00 3.36
440 441 5.691754 GTGGAGCACATTTTTAACTTCAAGG 59.308 40.000 0.00 0.00 34.08 3.61
443 444 4.892934 AGGTGGAGCACATTTTTAACTTCA 59.107 37.500 0.00 0.00 35.86 3.02
447 448 3.500680 TCGAGGTGGAGCACATTTTTAAC 59.499 43.478 0.00 0.00 35.86 2.01
452 453 2.496899 AATCGAGGTGGAGCACATTT 57.503 45.000 0.00 0.00 35.86 2.32
515 516 2.448153 TTCGTCGGTGTCGGACGAAG 62.448 60.000 27.71 11.99 44.74 3.79
518 519 1.866496 GATTCGTCGGTGTCGGACG 60.866 63.158 18.66 18.66 39.42 4.79
521 522 1.132199 CTTCGATTCGTCGGTGTCGG 61.132 60.000 5.89 0.00 36.95 4.79
522 523 0.179207 TCTTCGATTCGTCGGTGTCG 60.179 55.000 5.89 8.01 35.55 4.35
526 527 1.135460 GGAGTTCTTCGATTCGTCGGT 60.135 52.381 5.89 0.00 0.00 4.69
528 529 2.546195 AGGAGTTCTTCGATTCGTCG 57.454 50.000 5.89 0.00 0.00 5.12
531 532 3.186409 TGCAAAAGGAGTTCTTCGATTCG 59.814 43.478 0.00 0.00 33.94 3.34
586 588 8.439172 TGATGGATGTGGATGATTTGTTAGATA 58.561 33.333 0.00 0.00 0.00 1.98
590 592 6.425735 AGTGATGGATGTGGATGATTTGTTA 58.574 36.000 0.00 0.00 0.00 2.41
591 593 5.266788 AGTGATGGATGTGGATGATTTGTT 58.733 37.500 0.00 0.00 0.00 2.83
593 595 5.847111 AAGTGATGGATGTGGATGATTTG 57.153 39.130 0.00 0.00 0.00 2.32
594 596 6.322201 GGTAAAGTGATGGATGTGGATGATTT 59.678 38.462 0.00 0.00 0.00 2.17
596 598 5.133322 AGGTAAAGTGATGGATGTGGATGAT 59.867 40.000 0.00 0.00 0.00 2.45
597 599 4.474651 AGGTAAAGTGATGGATGTGGATGA 59.525 41.667 0.00 0.00 0.00 2.92
603 605 8.319057 TCTATTGTAGGTAAAGTGATGGATGT 57.681 34.615 0.00 0.00 0.00 3.06
607 609 9.046296 GTGATTCTATTGTAGGTAAAGTGATGG 57.954 37.037 0.00 0.00 0.00 3.51
639 641 5.465935 TGACAAAGTTTTTGAGAGCGTTTT 58.534 33.333 8.41 0.00 0.00 2.43
640 642 5.054390 TGACAAAGTTTTTGAGAGCGTTT 57.946 34.783 8.41 0.00 0.00 3.60
641 643 4.695217 TGACAAAGTTTTTGAGAGCGTT 57.305 36.364 8.41 0.00 0.00 4.84
642 644 4.662145 CTTGACAAAGTTTTTGAGAGCGT 58.338 39.130 8.41 0.00 0.00 5.07
643 645 3.483558 GCTTGACAAAGTTTTTGAGAGCG 59.516 43.478 8.41 0.00 35.69 5.03
644 646 4.266265 GTGCTTGACAAAGTTTTTGAGAGC 59.734 41.667 8.41 12.48 35.69 4.09
645 647 5.401550 TGTGCTTGACAAAGTTTTTGAGAG 58.598 37.500 8.41 4.57 35.69 3.20
646 648 5.384063 TGTGCTTGACAAAGTTTTTGAGA 57.616 34.783 8.41 0.00 35.69 3.27
661 663 2.033801 CACCTTGTCCTCTTTGTGCTTG 59.966 50.000 0.00 0.00 0.00 4.01
662 664 2.301346 CACCTTGTCCTCTTTGTGCTT 58.699 47.619 0.00 0.00 0.00 3.91
664 666 0.312102 GCACCTTGTCCTCTTTGTGC 59.688 55.000 0.00 0.00 41.75 4.57
667 669 1.876156 GACTGCACCTTGTCCTCTTTG 59.124 52.381 0.00 0.00 0.00 2.77
675 677 0.468226 TTTCTCGGACTGCACCTTGT 59.532 50.000 0.00 0.00 0.00 3.16
676 678 1.532868 CTTTTCTCGGACTGCACCTTG 59.467 52.381 0.00 0.00 0.00 3.61
677 679 1.141053 ACTTTTCTCGGACTGCACCTT 59.859 47.619 0.00 0.00 0.00 3.50
678 680 0.759346 ACTTTTCTCGGACTGCACCT 59.241 50.000 0.00 0.00 0.00 4.00
679 681 1.149148 GACTTTTCTCGGACTGCACC 58.851 55.000 0.00 0.00 0.00 5.01
681 683 1.686587 TCAGACTTTTCTCGGACTGCA 59.313 47.619 0.00 0.00 0.00 4.41
682 684 2.062519 GTCAGACTTTTCTCGGACTGC 58.937 52.381 0.00 0.00 33.86 4.40
683 685 3.371102 TGTCAGACTTTTCTCGGACTG 57.629 47.619 1.31 0.00 36.60 3.51
684 686 4.082136 GGTATGTCAGACTTTTCTCGGACT 60.082 45.833 1.31 0.00 36.60 3.85
685 687 4.174762 GGTATGTCAGACTTTTCTCGGAC 58.825 47.826 1.31 0.00 36.30 4.79
686 688 3.830178 TGGTATGTCAGACTTTTCTCGGA 59.170 43.478 1.31 0.00 0.00 4.55
687 689 3.927142 GTGGTATGTCAGACTTTTCTCGG 59.073 47.826 1.31 0.00 0.00 4.63
689 691 3.927142 CCGTGGTATGTCAGACTTTTCTC 59.073 47.826 1.31 0.00 0.00 2.87
693 695 3.368116 GCTACCGTGGTATGTCAGACTTT 60.368 47.826 1.31 0.00 0.00 2.66
694 696 2.165845 GCTACCGTGGTATGTCAGACTT 59.834 50.000 1.31 0.00 0.00 3.01
695 697 1.749634 GCTACCGTGGTATGTCAGACT 59.250 52.381 1.31 0.00 0.00 3.24
697 699 1.842052 TGCTACCGTGGTATGTCAGA 58.158 50.000 0.00 0.00 0.00 3.27
698 700 2.545952 GGATGCTACCGTGGTATGTCAG 60.546 54.545 0.00 0.00 0.00 3.51
699 701 1.411246 GGATGCTACCGTGGTATGTCA 59.589 52.381 0.00 0.00 0.00 3.58
710 712 1.883084 CGTTGCCTCGGATGCTACC 60.883 63.158 12.40 0.00 32.01 3.18
711 713 0.872021 CTCGTTGCCTCGGATGCTAC 60.872 60.000 9.12 9.12 0.00 3.58
712 714 1.437573 CTCGTTGCCTCGGATGCTA 59.562 57.895 6.81 0.00 0.00 3.49
713 715 2.185350 CTCGTTGCCTCGGATGCT 59.815 61.111 6.81 0.00 0.00 3.79
714 716 2.650813 ATCCTCGTTGCCTCGGATGC 62.651 60.000 0.00 0.00 35.07 3.91
715 717 0.673985 TATCCTCGTTGCCTCGGATG 59.326 55.000 0.00 0.00 36.92 3.51
716 718 1.341531 CTTATCCTCGTTGCCTCGGAT 59.658 52.381 0.00 0.00 39.47 4.18
718 720 0.876342 GCTTATCCTCGTTGCCTCGG 60.876 60.000 0.00 0.00 0.00 4.63
719 721 0.876342 GGCTTATCCTCGTTGCCTCG 60.876 60.000 0.00 0.00 40.36 4.63
721 723 1.527370 GGGCTTATCCTCGTTGCCT 59.473 57.895 0.00 0.00 42.84 4.75
726 728 2.042230 ACCCGGGCTTATCCTCGT 60.042 61.111 24.08 0.00 34.39 4.18
727 729 1.400530 AAGACCCGGGCTTATCCTCG 61.401 60.000 24.08 0.00 34.39 4.63
729 731 0.031010 AGAAGACCCGGGCTTATCCT 60.031 55.000 24.08 14.79 34.39 3.24
730 732 0.393448 GAGAAGACCCGGGCTTATCC 59.607 60.000 27.88 17.83 29.69 2.59
734 899 1.694696 GATATGAGAAGACCCGGGCTT 59.305 52.381 24.08 24.36 0.00 4.35
735 900 1.343069 GATATGAGAAGACCCGGGCT 58.657 55.000 24.08 16.60 0.00 5.19
741 906 3.256879 TCTGATGCGGATATGAGAAGACC 59.743 47.826 0.00 0.00 0.00 3.85
750 915 4.405036 ACAGCTCATATCTGATGCGGATAT 59.595 41.667 0.00 3.51 41.49 1.63
755 920 6.501781 TCATATACAGCTCATATCTGATGCG 58.498 40.000 0.00 0.00 35.61 4.73
758 923 6.554228 CCCCTCATATACAGCTCATATCTGAT 59.446 42.308 0.00 0.00 35.61 2.90
759 924 5.896106 CCCCTCATATACAGCTCATATCTGA 59.104 44.000 0.00 0.00 35.61 3.27
761 949 5.660417 CACCCCTCATATACAGCTCATATCT 59.340 44.000 0.00 0.00 0.00 1.98
768 956 2.968574 CTGACACCCCTCATATACAGCT 59.031 50.000 0.00 0.00 0.00 4.24
772 960 3.322254 CCAGACTGACACCCCTCATATAC 59.678 52.174 3.32 0.00 0.00 1.47
773 961 3.576861 CCAGACTGACACCCCTCATATA 58.423 50.000 3.32 0.00 0.00 0.86
779 967 2.205462 AGCCAGACTGACACCCCT 59.795 61.111 3.32 0.00 0.00 4.79
788 976 4.876107 CGGTACAATAAATTCAGCCAGACT 59.124 41.667 0.00 0.00 0.00 3.24
789 977 4.035208 CCGGTACAATAAATTCAGCCAGAC 59.965 45.833 0.00 0.00 0.00 3.51
791 979 3.945285 ACCGGTACAATAAATTCAGCCAG 59.055 43.478 4.49 0.00 0.00 4.85
792 980 3.958018 ACCGGTACAATAAATTCAGCCA 58.042 40.909 4.49 0.00 0.00 4.75
793 981 4.976224 AACCGGTACAATAAATTCAGCC 57.024 40.909 8.00 0.00 0.00 4.85
794 982 5.945155 TCAAACCGGTACAATAAATTCAGC 58.055 37.500 8.00 0.00 0.00 4.26
796 984 7.574217 GCTTCTCAAACCGGTACAATAAATTCA 60.574 37.037 8.00 0.00 0.00 2.57
797 985 6.745907 GCTTCTCAAACCGGTACAATAAATTC 59.254 38.462 8.00 0.00 0.00 2.17
805 993 1.053424 AGGCTTCTCAAACCGGTACA 58.947 50.000 8.00 0.00 0.00 2.90
807 995 0.323629 CCAGGCTTCTCAAACCGGTA 59.676 55.000 8.00 0.00 0.00 4.02
808 996 1.073199 CCAGGCTTCTCAAACCGGT 59.927 57.895 0.00 0.00 0.00 5.28
823 1011 5.070446 TCTGGTCACATTATAACCTAGCCAG 59.930 44.000 15.51 15.51 40.58 4.85
824 1012 4.966168 TCTGGTCACATTATAACCTAGCCA 59.034 41.667 0.00 0.00 34.05 4.75
827 1015 6.980978 CAGTGTCTGGTCACATTATAACCTAG 59.019 42.308 0.00 0.00 40.37 3.02
833 1021 5.221244 CCGATCAGTGTCTGGTCACATTATA 60.221 44.000 10.06 0.00 41.28 0.98
835 1023 3.119137 CCGATCAGTGTCTGGTCACATTA 60.119 47.826 10.06 0.00 41.28 1.90
839 1027 0.108615 CCCGATCAGTGTCTGGTCAC 60.109 60.000 10.06 0.00 41.28 3.67
845 1036 1.313812 GGACGACCCGATCAGTGTCT 61.314 60.000 0.00 0.00 0.00 3.41
847 1038 3.285371 GGACGACCCGATCAGTGT 58.715 61.111 0.00 0.00 0.00 3.55
863 1054 3.269347 CCAAATACGGCCGAGCGG 61.269 66.667 35.90 19.91 38.57 5.52
864 1055 2.202824 TCCAAATACGGCCGAGCG 60.203 61.111 35.90 14.72 0.00 5.03
867 1058 1.477553 ACTACTCCAAATACGGCCGA 58.522 50.000 35.90 16.57 0.00 5.54
868 1059 2.620115 TCTACTACTCCAAATACGGCCG 59.380 50.000 26.86 26.86 0.00 6.13
869 1060 4.660789 TTCTACTACTCCAAATACGGCC 57.339 45.455 0.00 0.00 0.00 6.13
870 1061 5.050295 GCAATTCTACTACTCCAAATACGGC 60.050 44.000 0.00 0.00 0.00 5.68
871 1062 6.046593 TGCAATTCTACTACTCCAAATACGG 58.953 40.000 0.00 0.00 0.00 4.02
872 1063 6.757010 ACTGCAATTCTACTACTCCAAATACG 59.243 38.462 0.00 0.00 0.00 3.06
873 1064 9.595823 TTACTGCAATTCTACTACTCCAAATAC 57.404 33.333 0.00 0.00 0.00 1.89
875 1066 9.515226 TTTTACTGCAATTCTACTACTCCAAAT 57.485 29.630 0.00 0.00 0.00 2.32
876 1067 8.780249 GTTTTACTGCAATTCTACTACTCCAAA 58.220 33.333 0.00 0.00 0.00 3.28
877 1068 8.154856 AGTTTTACTGCAATTCTACTACTCCAA 58.845 33.333 0.00 0.00 0.00 3.53
878 1069 7.676947 AGTTTTACTGCAATTCTACTACTCCA 58.323 34.615 0.00 0.00 0.00 3.86
880 1071 9.813080 CAAAGTTTTACTGCAATTCTACTACTC 57.187 33.333 0.00 0.00 0.00 2.59
882 1073 8.565416 ACCAAAGTTTTACTGCAATTCTACTAC 58.435 33.333 0.00 0.00 0.00 2.73
884 1075 7.582667 ACCAAAGTTTTACTGCAATTCTACT 57.417 32.000 0.00 0.00 0.00 2.57
887 1078 6.915843 CGTAACCAAAGTTTTACTGCAATTCT 59.084 34.615 0.00 0.00 37.42 2.40
890 1081 5.974751 CACGTAACCAAAGTTTTACTGCAAT 59.025 36.000 0.00 0.00 37.42 3.56
891 1082 5.106237 ACACGTAACCAAAGTTTTACTGCAA 60.106 36.000 0.00 0.00 37.42 4.08
893 1084 4.912214 ACACGTAACCAAAGTTTTACTGC 58.088 39.130 0.00 0.00 37.42 4.40
894 1085 7.112426 GCATTACACGTAACCAAAGTTTTACTG 59.888 37.037 0.00 0.00 37.42 2.74
895 1086 7.134163 GCATTACACGTAACCAAAGTTTTACT 58.866 34.615 0.00 0.00 37.42 2.24
896 1087 6.911511 TGCATTACACGTAACCAAAGTTTTAC 59.088 34.615 0.00 0.00 37.42 2.01
901 1594 4.477302 GTGCATTACACGTAACCAAAGT 57.523 40.909 0.00 0.00 40.07 2.66
928 1621 4.343526 TGTCTCTCTCAAAGCAGAACTCTT 59.656 41.667 0.00 0.00 0.00 2.85
930 1623 4.250116 TGTCTCTCTCAAAGCAGAACTC 57.750 45.455 0.00 0.00 0.00 3.01
937 1630 5.356751 TCTCTCTGTATGTCTCTCTCAAAGC 59.643 44.000 0.00 0.00 0.00 3.51
939 1632 6.241645 TGTCTCTCTGTATGTCTCTCTCAAA 58.758 40.000 0.00 0.00 0.00 2.69
984 1749 3.147595 ATCAGTCAGCCGCCGCTA 61.148 61.111 0.00 0.00 46.25 4.26
1358 2129 1.410004 TGACTCGGAAAGGTGAGTGT 58.590 50.000 0.00 0.00 45.09 3.55
1359 2130 2.526304 TTGACTCGGAAAGGTGAGTG 57.474 50.000 0.00 0.00 45.09 3.51
1363 2134 1.812571 CCCATTTGACTCGGAAAGGTG 59.187 52.381 0.00 0.00 0.00 4.00
1364 2135 1.423921 ACCCATTTGACTCGGAAAGGT 59.576 47.619 0.00 0.00 0.00 3.50
1365 2136 2.084546 GACCCATTTGACTCGGAAAGG 58.915 52.381 0.00 0.00 0.00 3.11
1366 2137 2.484264 GTGACCCATTTGACTCGGAAAG 59.516 50.000 0.00 0.00 0.00 2.62
1367 2138 2.105821 AGTGACCCATTTGACTCGGAAA 59.894 45.455 0.00 0.00 0.00 3.13
1368 2139 1.697432 AGTGACCCATTTGACTCGGAA 59.303 47.619 0.00 0.00 0.00 4.30
1369 2140 1.001974 CAGTGACCCATTTGACTCGGA 59.998 52.381 0.00 0.00 0.00 4.55
1446 2217 2.970324 GTGGAAAGGTCACGCGCA 60.970 61.111 5.73 0.00 0.00 6.09
1624 2951 3.844090 GCAGAGCCCTCGGAGTCC 61.844 72.222 0.00 0.00 34.09 3.85
1744 3071 1.519455 CTCGGAGTTGATGGCGTCC 60.519 63.158 3.88 0.00 0.00 4.79
1981 3308 1.676678 CGAAGGCGATGGGGAAGAGA 61.677 60.000 0.00 0.00 40.82 3.10
2071 3398 3.302347 GACCACGGTGCTGAGGAGG 62.302 68.421 1.68 0.00 0.00 4.30
2188 3515 3.370209 CCTTGATGATCAGGTTGAGCAGA 60.370 47.826 0.09 0.00 46.57 4.26
2200 3527 1.160137 GCCCATACGCCTTGATGATC 58.840 55.000 0.00 0.00 0.00 2.92
2278 3605 1.006571 GGTGAACTCGTTCGGCTCA 60.007 57.895 5.43 0.00 42.28 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.