Multiple sequence alignment - TraesCS7B01G053100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G053100 chr7B 100.000 2456 0 0 1 2456 55858333 55855878 0.000000e+00 4536.0
1 TraesCS7B01G053100 chr7D 85.213 1481 139 36 937 2383 100299775 100298341 0.000000e+00 1448.0
2 TraesCS7B01G053100 chr7D 81.395 344 36 14 208 534 100300412 100300080 3.130000e-64 255.0
3 TraesCS7B01G053100 chr7D 89.100 211 11 6 1 211 100300674 100300476 4.050000e-63 252.0
4 TraesCS7B01G053100 chr7D 83.684 190 10 8 417 592 63047711 63047893 2.530000e-35 159.0
5 TraesCS7B01G053100 chr7D 89.888 89 7 2 284 371 63047534 63047621 2.000000e-21 113.0
6 TraesCS7B01G053100 chr7D 85.135 74 11 0 809 882 63047934 63048007 2.620000e-10 76.8
7 TraesCS7B01G053100 chr7D 97.674 43 1 0 898 940 63048057 63048099 9.420000e-10 75.0
8 TraesCS7B01G053100 chr7D 96.875 32 1 0 561 592 100300084 100300053 1.000000e-03 54.7
9 TraesCS7B01G053100 chr7A 91.328 369 22 6 1185 1546 102540024 102539659 1.700000e-136 496.0
10 TraesCS7B01G053100 chr7A 94.578 166 6 1 937 1102 102540211 102540049 1.130000e-63 254.0
11 TraesCS7B01G053100 chr7A 88.112 143 7 4 615 757 102540565 102540433 7.030000e-36 161.0
12 TraesCS7B01G053100 chr7A 88.991 109 7 1 459 567 102540761 102540658 1.980000e-26 130.0
13 TraesCS7B01G053100 chr4A 79.967 614 99 13 1742 2340 574911191 574910587 4.850000e-117 431.0
14 TraesCS7B01G053100 chr6D 82.875 473 73 7 1742 2210 80604954 80604486 3.780000e-113 418.0
15 TraesCS7B01G053100 chr6D 77.222 720 139 18 1743 2456 80662778 80662078 4.920000e-107 398.0
16 TraesCS7B01G053100 chr6D 80.538 483 88 6 1757 2237 368735355 368735833 1.390000e-97 366.0
17 TraesCS7B01G053100 chr5B 76.316 798 164 16 1675 2453 709169769 709170560 1.060000e-108 403.0
18 TraesCS7B01G053100 chr5B 81.023 469 78 11 1758 2221 553702086 553702548 1.800000e-96 363.0
19 TraesCS7B01G053100 chr5B 79.021 143 22 5 1669 1810 129569565 129569700 9.350000e-15 91.6
20 TraesCS7B01G053100 chr2D 77.178 723 140 15 1744 2452 509759865 509760576 4.920000e-107 398.0
21 TraesCS7B01G053100 chr1A 78.409 616 123 8 1669 2280 518468096 518467487 2.290000e-105 392.0
22 TraesCS7B01G053100 chr1A 77.128 376 73 8 2083 2455 518100889 518100524 3.200000e-49 206.0
23 TraesCS7B01G053100 chr1B 81.250 144 23 4 1669 1810 326427033 326426892 2.000000e-21 113.0
24 TraesCS7B01G053100 chr4B 80.808 99 15 3 2351 2447 45208448 45208352 9.420000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G053100 chr7B 55855878 55858333 2455 True 4536.000 4536 100.00000 1 2456 1 chr7B.!!$R1 2455
1 TraesCS7B01G053100 chr7D 100298341 100300674 2333 True 502.425 1448 88.14575 1 2383 4 chr7D.!!$R1 2382
2 TraesCS7B01G053100 chr7A 102539659 102540761 1102 True 260.250 496 90.75225 459 1546 4 chr7A.!!$R1 1087
3 TraesCS7B01G053100 chr4A 574910587 574911191 604 True 431.000 431 79.96700 1742 2340 1 chr4A.!!$R1 598
4 TraesCS7B01G053100 chr6D 80662078 80662778 700 True 398.000 398 77.22200 1743 2456 1 chr6D.!!$R2 713
5 TraesCS7B01G053100 chr5B 709169769 709170560 791 False 403.000 403 76.31600 1675 2453 1 chr5B.!!$F3 778
6 TraesCS7B01G053100 chr2D 509759865 509760576 711 False 398.000 398 77.17800 1744 2452 1 chr2D.!!$F1 708
7 TraesCS7B01G053100 chr1A 518467487 518468096 609 True 392.000 392 78.40900 1669 2280 1 chr1A.!!$R2 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 968 0.249573 GGTCGACGGGTCAAACTTGA 60.25 55.0 9.92 0.0 34.2 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2374 0.312416 CTTCGAGGATGAGTAGGGCG 59.688 60.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 3.374058 GGATTTCGGGTGTACAACATCAG 59.626 47.826 14.02 0.91 28.66 2.90
124 125 5.287674 GGTAAGAAACTACCCAGGGTATC 57.712 47.826 19.57 13.73 37.56 2.24
125 126 4.102210 GGTAAGAAACTACCCAGGGTATCC 59.898 50.000 19.57 8.45 37.56 2.59
126 127 3.797671 AGAAACTACCCAGGGTATCCT 57.202 47.619 19.57 10.48 46.26 3.24
127 128 4.913154 AGAAACTACCCAGGGTATCCTA 57.087 45.455 19.57 0.00 42.67 2.94
128 129 5.435545 AGAAACTACCCAGGGTATCCTAT 57.564 43.478 19.57 4.18 42.67 2.57
129 130 5.800653 AGAAACTACCCAGGGTATCCTATT 58.199 41.667 19.57 9.56 42.67 1.73
130 131 5.607171 AGAAACTACCCAGGGTATCCTATTG 59.393 44.000 19.57 7.98 42.67 1.90
131 132 3.248888 ACTACCCAGGGTATCCTATTGC 58.751 50.000 19.57 0.00 42.67 3.56
132 133 2.514726 ACCCAGGGTATCCTATTGCT 57.485 50.000 10.48 0.00 42.67 3.91
133 134 2.339769 ACCCAGGGTATCCTATTGCTC 58.660 52.381 10.48 0.00 42.67 4.26
134 135 1.276421 CCCAGGGTATCCTATTGCTCG 59.724 57.143 0.00 0.00 42.67 5.03
135 136 1.338200 CCAGGGTATCCTATTGCTCGC 60.338 57.143 0.00 0.00 42.67 5.03
138 139 1.542915 GGGTATCCTATTGCTCGCGTA 59.457 52.381 5.77 0.00 0.00 4.42
223 291 2.031157 CCTTCACCAACATCCGTGTTTC 60.031 50.000 0.00 0.00 46.07 2.78
226 294 1.946768 CACCAACATCCGTGTTTCTGT 59.053 47.619 0.00 0.00 46.07 3.41
254 322 3.594134 CAGCACTGGAACCAAAAACAAA 58.406 40.909 0.00 0.00 0.00 2.83
255 323 3.999663 CAGCACTGGAACCAAAAACAAAA 59.000 39.130 0.00 0.00 0.00 2.44
256 324 4.453819 CAGCACTGGAACCAAAAACAAAAA 59.546 37.500 0.00 0.00 0.00 1.94
289 357 8.612619 GTGATTGTATCAGTAGTAACAAATGGG 58.387 37.037 0.00 0.00 40.53 4.00
291 359 7.915293 TTGTATCAGTAGTAACAAATGGGTG 57.085 36.000 0.00 0.00 0.00 4.61
292 360 7.247456 TGTATCAGTAGTAACAAATGGGTGA 57.753 36.000 0.00 0.00 0.00 4.02
293 361 7.327975 TGTATCAGTAGTAACAAATGGGTGAG 58.672 38.462 0.00 0.00 0.00 3.51
312 380 3.069443 TGAGGTTTTGATCCTTTGCCAAC 59.931 43.478 0.00 0.00 35.20 3.77
319 387 1.024579 ATCCTTTGCCAACCGTAGCG 61.025 55.000 0.00 0.00 0.00 4.26
330 398 0.887836 ACCGTAGCGAGTCAGACACA 60.888 55.000 2.66 0.00 0.00 3.72
367 435 3.493350 GCTATCCTGGTGTGTGGTATCAG 60.493 52.174 0.00 0.00 0.00 2.90
375 443 4.707448 TGGTGTGTGGTATCAGTTTTTGTT 59.293 37.500 0.00 0.00 0.00 2.83
376 444 5.186021 TGGTGTGTGGTATCAGTTTTTGTTT 59.814 36.000 0.00 0.00 0.00 2.83
377 445 6.103330 GGTGTGTGGTATCAGTTTTTGTTTT 58.897 36.000 0.00 0.00 0.00 2.43
378 446 6.592220 GGTGTGTGGTATCAGTTTTTGTTTTT 59.408 34.615 0.00 0.00 0.00 1.94
379 447 7.201487 GGTGTGTGGTATCAGTTTTTGTTTTTC 60.201 37.037 0.00 0.00 0.00 2.29
380 448 7.544217 GTGTGTGGTATCAGTTTTTGTTTTTCT 59.456 33.333 0.00 0.00 0.00 2.52
381 449 7.543868 TGTGTGGTATCAGTTTTTGTTTTTCTG 59.456 33.333 0.00 0.00 0.00 3.02
382 450 7.544217 GTGTGGTATCAGTTTTTGTTTTTCTGT 59.456 33.333 0.00 0.00 0.00 3.41
383 451 8.091449 TGTGGTATCAGTTTTTGTTTTTCTGTT 58.909 29.630 0.00 0.00 0.00 3.16
384 452 8.931775 GTGGTATCAGTTTTTGTTTTTCTGTTT 58.068 29.630 0.00 0.00 0.00 2.83
385 453 9.495572 TGGTATCAGTTTTTGTTTTTCTGTTTT 57.504 25.926 0.00 0.00 0.00 2.43
421 507 3.909732 TGAGGGGATGTTGTTTCAGTTT 58.090 40.909 0.00 0.00 0.00 2.66
438 524 5.189928 TCAGTTTTCTGGTAAGTCAAGCAA 58.810 37.500 0.00 0.00 46.94 3.91
450 536 0.895530 TCAAGCAAGTACTCCCTCCG 59.104 55.000 0.00 0.00 0.00 4.63
455 541 1.379576 AAGTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
456 542 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
457 543 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
485 585 4.459390 TTGATGTAATTTCGGACGGAGA 57.541 40.909 0.00 0.00 0.00 3.71
495 595 2.940158 TCGGACGGAGATAAATCAGGA 58.060 47.619 0.00 0.00 0.00 3.86
539 639 1.538047 CAGTTGCAGGGCTGTATTGT 58.462 50.000 6.79 0.00 0.00 2.71
540 640 2.617788 CCAGTTGCAGGGCTGTATTGTA 60.618 50.000 12.03 0.00 0.00 2.41
541 641 3.282021 CAGTTGCAGGGCTGTATTGTAT 58.718 45.455 6.79 0.00 0.00 2.29
542 642 3.696051 CAGTTGCAGGGCTGTATTGTATT 59.304 43.478 6.79 0.00 0.00 1.89
543 643 4.158394 CAGTTGCAGGGCTGTATTGTATTT 59.842 41.667 6.79 0.00 0.00 1.40
553 653 2.354510 TGTATTGTATTTGCAGCTCGGC 59.645 45.455 0.00 0.00 0.00 5.54
588 688 5.049129 GCTCATTTGTAGCTCAAGTTCAAGT 60.049 40.000 0.00 0.00 37.35 3.16
595 695 1.683385 GCTCAAGTTCAAGTGGCCTTT 59.317 47.619 3.32 0.00 0.00 3.11
598 698 3.096092 TCAAGTTCAAGTGGCCTTTTGT 58.904 40.909 16.13 0.00 0.00 2.83
599 699 3.130340 TCAAGTTCAAGTGGCCTTTTGTC 59.870 43.478 16.13 11.82 0.00 3.18
600 700 2.031870 AGTTCAAGTGGCCTTTTGTCC 58.968 47.619 16.13 9.91 0.00 4.02
603 703 0.593128 CAAGTGGCCTTTTGTCCTCG 59.407 55.000 3.32 0.00 0.00 4.63
605 705 0.250338 AGTGGCCTTTTGTCCTCGAC 60.250 55.000 3.32 0.00 0.00 4.20
606 706 1.301401 TGGCCTTTTGTCCTCGACG 60.301 57.895 3.32 0.00 34.95 5.12
611 711 1.615107 CTTTTGTCCTCGACGTCGGC 61.615 60.000 35.05 22.53 40.29 5.54
649 794 0.527817 CCTTGGCCGATCGTAGTGAC 60.528 60.000 15.09 0.60 0.00 3.67
650 795 0.456221 CTTGGCCGATCGTAGTGACT 59.544 55.000 15.09 0.00 0.00 3.41
651 796 1.674441 CTTGGCCGATCGTAGTGACTA 59.326 52.381 15.09 0.00 0.00 2.59
652 797 1.306148 TGGCCGATCGTAGTGACTAG 58.694 55.000 15.09 0.00 0.00 2.57
653 798 1.307097 GGCCGATCGTAGTGACTAGT 58.693 55.000 15.09 0.00 0.00 2.57
654 799 1.002684 GGCCGATCGTAGTGACTAGTG 60.003 57.143 15.09 0.00 0.00 2.74
655 800 1.938577 GCCGATCGTAGTGACTAGTGA 59.061 52.381 15.09 0.00 0.00 3.41
656 801 2.286301 GCCGATCGTAGTGACTAGTGAC 60.286 54.545 15.09 4.04 0.00 3.67
667 812 3.697045 GTGACTAGTGACTAGTGAGCCAT 59.303 47.826 28.28 3.15 45.90 4.40
693 838 4.804139 ACGAAATCTGTGTTACGATCATCC 59.196 41.667 0.00 0.00 0.00 3.51
747 892 2.094390 TCATCTACAAAACCTCGACCCG 60.094 50.000 0.00 0.00 0.00 5.28
749 894 0.319405 CTACAAAACCTCGACCCGGT 59.681 55.000 0.00 0.00 35.97 5.28
761 906 3.708210 CCCGGTTGGTCTCTAGCA 58.292 61.111 0.00 0.00 0.00 3.49
762 907 2.212327 CCCGGTTGGTCTCTAGCAT 58.788 57.895 0.00 0.00 32.06 3.79
763 908 1.410004 CCCGGTTGGTCTCTAGCATA 58.590 55.000 0.00 0.00 32.06 3.14
764 909 1.341531 CCCGGTTGGTCTCTAGCATAG 59.658 57.143 0.00 0.00 41.04 2.23
765 910 1.341531 CCGGTTGGTCTCTAGCATAGG 59.658 57.143 0.00 0.00 39.78 2.57
766 911 2.307768 CGGTTGGTCTCTAGCATAGGA 58.692 52.381 0.00 0.00 39.78 2.94
767 912 2.294791 CGGTTGGTCTCTAGCATAGGAG 59.705 54.545 0.00 0.00 39.78 3.69
768 913 3.567397 GGTTGGTCTCTAGCATAGGAGA 58.433 50.000 0.00 0.00 39.78 3.71
769 914 3.961408 GGTTGGTCTCTAGCATAGGAGAA 59.039 47.826 0.00 0.00 39.78 2.87
770 915 4.406003 GGTTGGTCTCTAGCATAGGAGAAA 59.594 45.833 0.00 0.00 39.78 2.52
771 916 5.104900 GGTTGGTCTCTAGCATAGGAGAAAA 60.105 44.000 0.00 0.00 39.78 2.29
772 917 5.860941 TGGTCTCTAGCATAGGAGAAAAG 57.139 43.478 0.00 0.00 39.78 2.27
773 918 5.519808 TGGTCTCTAGCATAGGAGAAAAGA 58.480 41.667 0.00 0.00 39.78 2.52
774 919 5.596361 TGGTCTCTAGCATAGGAGAAAAGAG 59.404 44.000 0.00 0.00 39.78 2.85
775 920 5.830991 GGTCTCTAGCATAGGAGAAAAGAGA 59.169 44.000 0.00 0.00 39.78 3.10
776 921 6.493458 GGTCTCTAGCATAGGAGAAAAGAGAT 59.507 42.308 0.00 0.00 39.89 2.75
777 922 7.309194 GGTCTCTAGCATAGGAGAAAAGAGATC 60.309 44.444 0.00 0.00 39.89 2.75
778 923 6.719370 TCTCTAGCATAGGAGAAAAGAGATCC 59.281 42.308 0.00 0.00 39.78 3.36
779 924 4.599047 AGCATAGGAGAAAAGAGATCCG 57.401 45.455 0.00 0.00 38.20 4.18
799 944 0.456995 CTCCTGCCGAAACTCGACTC 60.457 60.000 0.00 0.00 43.74 3.36
800 945 1.801913 CCTGCCGAAACTCGACTCG 60.802 63.158 0.00 0.00 43.74 4.18
801 946 1.209383 CTGCCGAAACTCGACTCGA 59.791 57.895 0.29 0.29 43.74 4.04
802 947 1.066114 CTGCCGAAACTCGACTCGAC 61.066 60.000 0.00 0.00 43.74 4.20
803 948 2.144680 GCCGAAACTCGACTCGACG 61.145 63.158 0.00 0.00 43.74 5.12
804 949 1.511464 CCGAAACTCGACTCGACGG 60.511 63.158 12.22 12.22 43.74 4.79
805 950 1.511464 CGAAACTCGACTCGACGGG 60.511 63.158 0.00 0.00 43.74 5.28
807 952 0.454117 GAAACTCGACTCGACGGGTC 60.454 60.000 18.09 18.09 46.53 4.46
822 967 1.226030 GGGTCGACGGGTCAAACTTG 61.226 60.000 9.92 0.00 0.00 3.16
823 968 0.249573 GGTCGACGGGTCAAACTTGA 60.250 55.000 9.92 0.00 34.20 3.02
833 978 1.398692 TCAAACTTGACAACCCTGGC 58.601 50.000 0.00 0.00 31.01 4.85
835 980 0.759060 AAACTTGACAACCCTGGCCC 60.759 55.000 0.00 0.00 0.00 5.80
841 986 1.148027 TGACAACCCTGGCCCAAAATA 59.852 47.619 0.00 0.00 0.00 1.40
851 996 2.636893 TGGCCCAAAATATGCAAGTTGT 59.363 40.909 0.00 0.00 0.00 3.32
883 1047 5.655532 ACAGCCGGAAAAGTCTAGTCTAATA 59.344 40.000 5.05 0.00 0.00 0.98
884 1048 6.154021 ACAGCCGGAAAAGTCTAGTCTAATAA 59.846 38.462 5.05 0.00 0.00 1.40
886 1050 7.711339 CAGCCGGAAAAGTCTAGTCTAATAAAT 59.289 37.037 5.05 0.00 0.00 1.40
888 1052 8.976471 GCCGGAAAAGTCTAGTCTAATAAATAC 58.024 37.037 5.05 0.00 0.00 1.89
916 1121 5.149239 TGTATATATCCTTCCGTTCCACCA 58.851 41.667 0.00 0.00 0.00 4.17
921 1126 1.422024 TCCTTCCGTTCCACCAAATGA 59.578 47.619 0.00 0.00 0.00 2.57
922 1127 2.041081 TCCTTCCGTTCCACCAAATGAT 59.959 45.455 0.00 0.00 0.00 2.45
977 1231 4.007644 CCTGCACCGGAGACAGCA 62.008 66.667 9.46 9.26 35.43 4.41
1010 1266 0.825840 GAGGAGGAGATGGAGACGGG 60.826 65.000 0.00 0.00 0.00 5.28
1120 1376 4.124351 TAAGCACCCGCCGACGAG 62.124 66.667 0.00 0.00 43.93 4.18
1153 1432 4.314522 TGTTTCCTTTCCTCCATGCATA 57.685 40.909 0.00 0.00 0.00 3.14
1154 1433 4.870636 TGTTTCCTTTCCTCCATGCATAT 58.129 39.130 0.00 0.00 0.00 1.78
1155 1434 4.646040 TGTTTCCTTTCCTCCATGCATATG 59.354 41.667 0.00 0.00 0.00 1.78
1156 1435 2.867624 TCCTTTCCTCCATGCATATGC 58.132 47.619 21.09 21.09 42.50 3.14
1177 1456 3.126858 GCATGCATACCTTTCGACTTTCA 59.873 43.478 14.21 0.00 0.00 2.69
1179 1458 3.071479 TGCATACCTTTCGACTTTCACC 58.929 45.455 0.00 0.00 0.00 4.02
1180 1459 3.071479 GCATACCTTTCGACTTTCACCA 58.929 45.455 0.00 0.00 0.00 4.17
1213 1496 0.607489 ATGCTGCCGCTCACTCTTTT 60.607 50.000 0.70 0.00 36.97 2.27
1316 1599 1.092348 GTTATTCAAGCCCCCGTCAC 58.908 55.000 0.00 0.00 0.00 3.67
1334 1617 1.212490 CGGGTTACGTGCGGAACTA 59.788 57.895 17.63 0.00 38.88 2.24
1339 1622 0.168788 TTACGTGCGGAACTACCTCG 59.831 55.000 0.00 0.00 36.31 4.63
1349 1632 2.012673 GAACTACCTCGCCGTCTTCTA 58.987 52.381 0.00 0.00 0.00 2.10
1446 1732 2.104530 GCCGCCTCCTACGTCTTC 59.895 66.667 0.00 0.00 0.00 2.87
1466 1752 0.949105 GTCGCCTGACCGTGTTTGAT 60.949 55.000 0.00 0.00 39.30 2.57
1485 1771 0.676466 TGATTCCATGCCGTGTGGAC 60.676 55.000 0.68 0.00 45.05 4.02
1501 1787 2.142220 GACTGTCAGTCCCCCAACA 58.858 57.895 20.54 0.00 39.28 3.33
1512 1798 4.772100 CAGTCCCCCAACAAGATTATTTGT 59.228 41.667 0.00 0.00 42.82 2.83
1583 1869 2.649816 ACCTCCTTATTGTGCCTCCTTT 59.350 45.455 0.00 0.00 0.00 3.11
1624 1910 5.048573 AGGGCGAATTTTAGCTTAAAAACGA 60.049 36.000 21.89 0.00 40.62 3.85
1637 1923 7.796958 GCTTAAAAACGAAGCATCAAAGTAT 57.203 32.000 2.59 0.00 46.97 2.12
1654 1940 9.929180 ATCAAAGTATATATACAATGAGCACGT 57.071 29.630 22.00 9.30 35.26 4.49
1689 1975 4.442706 CATAGTTAGGGCATCTTCAACGT 58.557 43.478 0.00 0.00 0.00 3.99
1696 1982 1.523154 GCATCTTCAACGTTGGCCCA 61.523 55.000 27.02 5.85 0.00 5.36
1720 2006 2.796483 TTTGCTCCCACATCCGTCCG 62.796 60.000 0.00 0.00 0.00 4.79
1810 2097 4.517952 TGGACGAAATTCATGCAAACAT 57.482 36.364 0.00 0.00 36.79 2.71
1829 2116 7.975616 GCAAACATGGCGGATATTCATATAAAT 59.024 33.333 0.00 0.00 0.00 1.40
1890 2179 3.306472 AAAGCAGTTGGACCCTAAACA 57.694 42.857 0.00 0.00 0.00 2.83
1899 2188 5.368816 AGTTGGACCCTAAACATATCCTACC 59.631 44.000 0.00 0.00 36.29 3.18
1972 2261 4.478371 CTGCCGCCTCCATGAGCA 62.478 66.667 0.00 0.00 0.00 4.26
1990 2280 1.892209 CAGTAGCGGGGTTCAAAACT 58.108 50.000 0.00 0.00 0.00 2.66
2081 2374 3.704231 ATGCCATGTCGCCTCCCAC 62.704 63.158 0.00 0.00 0.00 4.61
2116 2409 1.152096 AAGGAGTCCCCGACCTGTT 60.152 57.895 5.25 0.00 40.87 3.16
2154 2448 3.389002 TGAACATGAGGTCGATGATGGAT 59.611 43.478 0.00 0.00 0.00 3.41
2205 2500 0.400213 TGCACCCTCGAAAGTTGGAT 59.600 50.000 0.00 0.00 0.00 3.41
2252 2547 1.281960 CGTCAGAGTTCACGACCGT 59.718 57.895 0.00 0.00 38.32 4.83
2300 2611 2.497628 CGCGTTTGCTCTGCGTTC 60.498 61.111 0.00 0.00 46.29 3.95
2330 2641 3.549900 TTGAGCACGCATGGCCTCA 62.550 57.895 3.32 0.00 0.00 3.86
2340 2651 1.840650 ATGGCCTCATAGAGCGCCT 60.841 57.895 19.84 3.28 42.40 5.52
2362 2673 1.964373 GCCCCGCAAAGAAGTTCGA 60.964 57.895 0.00 0.00 0.00 3.71
2363 2674 1.305930 GCCCCGCAAAGAAGTTCGAT 61.306 55.000 0.00 0.00 0.00 3.59
2406 2717 3.188786 CCTACTCGCTTGCGCACC 61.189 66.667 11.12 2.75 35.30 5.01
2407 2718 2.125912 CTACTCGCTTGCGCACCT 60.126 61.111 11.12 0.00 35.30 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 8.907222 TTTGCTATATCAAGAGATGTAATGCA 57.093 30.769 0.00 0.00 35.67 3.96
35 36 3.174375 GAGGAATTGCGTTCTCATTTGC 58.826 45.455 0.00 0.00 37.01 3.68
90 91 5.216614 AGTTTCTTACCCAGAGAGTTGAC 57.783 43.478 0.00 0.00 31.12 3.18
119 120 2.864968 CTACGCGAGCAATAGGATACC 58.135 52.381 15.93 0.00 37.17 2.73
131 132 1.063327 CTGTCTCCAGCTACGCGAG 59.937 63.158 15.93 7.21 0.00 5.03
132 133 1.241990 AACTGTCTCCAGCTACGCGA 61.242 55.000 15.93 0.00 42.81 5.87
133 134 0.450583 TAACTGTCTCCAGCTACGCG 59.549 55.000 3.53 3.53 42.81 6.01
134 135 2.649331 TTAACTGTCTCCAGCTACGC 57.351 50.000 0.00 0.00 42.81 4.42
135 136 4.733887 CGTATTTAACTGTCTCCAGCTACG 59.266 45.833 0.00 0.00 42.81 3.51
138 139 5.599999 ATCGTATTTAACTGTCTCCAGCT 57.400 39.130 0.00 0.00 42.81 4.24
194 195 3.193479 GGATGTTGGTGAAGGTTGGAATC 59.807 47.826 0.00 0.00 0.00 2.52
198 199 0.881118 CGGATGTTGGTGAAGGTTGG 59.119 55.000 0.00 0.00 0.00 3.77
255 323 9.787435 TTACTACTGATACAATCACCTGTTTTT 57.213 29.630 0.00 0.00 35.06 1.94
256 324 9.216117 GTTACTACTGATACAATCACCTGTTTT 57.784 33.333 0.00 0.00 35.06 2.43
257 325 8.372459 TGTTACTACTGATACAATCACCTGTTT 58.628 33.333 0.00 0.00 35.06 2.83
258 326 7.903145 TGTTACTACTGATACAATCACCTGTT 58.097 34.615 0.00 0.00 35.06 3.16
259 327 7.476540 TGTTACTACTGATACAATCACCTGT 57.523 36.000 0.00 0.00 35.06 4.00
260 328 8.771920 TTTGTTACTACTGATACAATCACCTG 57.228 34.615 0.00 0.00 35.06 4.00
261 329 9.383519 CATTTGTTACTACTGATACAATCACCT 57.616 33.333 0.00 0.00 35.06 4.00
262 330 8.612619 CCATTTGTTACTACTGATACAATCACC 58.387 37.037 0.00 0.00 35.06 4.02
263 331 8.612619 CCCATTTGTTACTACTGATACAATCAC 58.387 37.037 0.00 0.00 35.06 3.06
264 332 8.325787 ACCCATTTGTTACTACTGATACAATCA 58.674 33.333 0.00 0.00 37.76 2.57
269 337 6.761714 CCTCACCCATTTGTTACTACTGATAC 59.238 42.308 0.00 0.00 0.00 2.24
274 342 5.578157 AACCTCACCCATTTGTTACTACT 57.422 39.130 0.00 0.00 0.00 2.57
289 357 2.627699 TGGCAAAGGATCAAAACCTCAC 59.372 45.455 0.00 0.00 36.67 3.51
291 359 3.554960 GGTTGGCAAAGGATCAAAACCTC 60.555 47.826 0.00 0.00 36.67 3.85
292 360 2.368548 GGTTGGCAAAGGATCAAAACCT 59.631 45.455 0.00 0.00 39.69 3.50
293 361 2.766313 GGTTGGCAAAGGATCAAAACC 58.234 47.619 0.00 0.00 0.00 3.27
312 380 0.240145 TTGTGTCTGACTCGCTACGG 59.760 55.000 9.51 0.00 0.00 4.02
319 387 3.141398 TGCAGGATTTTGTGTCTGACTC 58.859 45.455 9.51 6.13 0.00 3.36
390 458 5.810095 ACAACATCCCCTCAAAAACAAAAA 58.190 33.333 0.00 0.00 0.00 1.94
391 459 5.428184 ACAACATCCCCTCAAAAACAAAA 57.572 34.783 0.00 0.00 0.00 2.44
392 460 5.428184 AACAACATCCCCTCAAAAACAAA 57.572 34.783 0.00 0.00 0.00 2.83
393 461 5.046304 TGAAACAACATCCCCTCAAAAACAA 60.046 36.000 0.00 0.00 0.00 2.83
394 462 4.467795 TGAAACAACATCCCCTCAAAAACA 59.532 37.500 0.00 0.00 0.00 2.83
395 463 5.017294 TGAAACAACATCCCCTCAAAAAC 57.983 39.130 0.00 0.00 0.00 2.43
397 465 4.285863 ACTGAAACAACATCCCCTCAAAA 58.714 39.130 0.00 0.00 0.00 2.44
411 479 6.404293 GCTTGACTTACCAGAAAACTGAAACA 60.404 38.462 0.00 0.00 0.00 2.83
421 507 5.510861 GGAGTACTTGCTTGACTTACCAGAA 60.511 44.000 0.00 0.00 0.00 3.02
438 524 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
450 536 5.828299 TTACATCAATTTCCATTCCGGAC 57.172 39.130 1.83 0.00 46.36 4.79
465 565 4.665833 ATCTCCGTCCGAAATTACATCA 57.334 40.909 0.00 0.00 0.00 3.07
475 575 2.940158 TCCTGATTTATCTCCGTCCGA 58.060 47.619 0.00 0.00 0.00 4.55
485 585 6.015688 GGCATCACAATCACATCCTGATTTAT 60.016 38.462 0.00 0.00 45.89 1.40
495 595 2.112380 TCACGGCATCACAATCACAT 57.888 45.000 0.00 0.00 0.00 3.21
539 639 0.744414 GGTGAGCCGAGCTGCAAATA 60.744 55.000 1.02 0.00 39.88 1.40
540 640 2.042831 GGTGAGCCGAGCTGCAAAT 61.043 57.895 1.02 0.00 39.88 2.32
541 641 2.669569 GGTGAGCCGAGCTGCAAA 60.670 61.111 1.02 0.00 39.88 3.68
542 642 4.704833 GGGTGAGCCGAGCTGCAA 62.705 66.667 1.02 0.00 39.88 4.08
553 653 0.523072 CAAATGAGCAACCGGGTGAG 59.477 55.000 27.49 0.00 0.00 3.51
588 688 1.301401 CGTCGAGGACAAAAGGCCA 60.301 57.895 5.01 0.00 32.09 5.36
595 695 2.537792 GATGCCGACGTCGAGGACAA 62.538 60.000 37.65 16.50 43.02 3.18
605 705 1.348250 CCATTTGACGATGCCGACG 59.652 57.895 0.00 0.00 39.50 5.12
606 706 0.802494 AACCATTTGACGATGCCGAC 59.198 50.000 0.00 0.00 39.50 4.79
611 711 4.970662 AGGATGAAACCATTTGACGATG 57.029 40.909 0.00 0.00 0.00 3.84
649 794 4.260825 CGTGTATGGCTCACTAGTCACTAG 60.261 50.000 10.55 10.55 40.98 2.57
650 795 3.626217 CGTGTATGGCTCACTAGTCACTA 59.374 47.826 0.00 0.00 40.98 2.74
651 796 2.423892 CGTGTATGGCTCACTAGTCACT 59.576 50.000 0.00 0.00 40.98 3.41
652 797 2.422479 TCGTGTATGGCTCACTAGTCAC 59.578 50.000 0.00 0.00 40.98 3.67
653 798 2.718563 TCGTGTATGGCTCACTAGTCA 58.281 47.619 0.00 0.00 42.75 3.41
654 799 3.777465 TTCGTGTATGGCTCACTAGTC 57.223 47.619 0.00 0.00 34.14 2.59
655 800 4.402793 AGATTTCGTGTATGGCTCACTAGT 59.597 41.667 0.00 0.00 34.14 2.57
656 801 4.742167 CAGATTTCGTGTATGGCTCACTAG 59.258 45.833 0.00 0.00 34.14 2.57
667 812 5.701855 TGATCGTAACACAGATTTCGTGTA 58.298 37.500 0.00 0.00 46.65 2.90
721 866 6.072119 GGGTCGAGGTTTTGTAGATGATTTTT 60.072 38.462 0.00 0.00 0.00 1.94
724 869 4.514401 GGGTCGAGGTTTTGTAGATGATT 58.486 43.478 0.00 0.00 0.00 2.57
732 877 3.233331 ACCGGGTCGAGGTTTTGT 58.767 55.556 6.32 0.00 39.29 2.83
747 892 3.567397 TCTCCTATGCTAGAGACCAACC 58.433 50.000 0.00 0.00 0.00 3.77
749 894 5.958380 TCTTTTCTCCTATGCTAGAGACCAA 59.042 40.000 0.00 0.00 0.00 3.67
754 899 6.349280 CGGATCTCTTTTCTCCTATGCTAGAG 60.349 46.154 0.00 0.00 0.00 2.43
755 900 5.475220 CGGATCTCTTTTCTCCTATGCTAGA 59.525 44.000 0.00 0.00 0.00 2.43
756 901 5.708948 CGGATCTCTTTTCTCCTATGCTAG 58.291 45.833 0.00 0.00 0.00 3.42
757 902 4.021894 GCGGATCTCTTTTCTCCTATGCTA 60.022 45.833 0.00 0.00 0.00 3.49
758 903 3.244044 GCGGATCTCTTTTCTCCTATGCT 60.244 47.826 0.00 0.00 0.00 3.79
759 904 3.063485 GCGGATCTCTTTTCTCCTATGC 58.937 50.000 0.00 0.00 0.00 3.14
760 905 4.555262 GAGCGGATCTCTTTTCTCCTATG 58.445 47.826 0.00 0.00 38.78 2.23
761 906 3.576550 GGAGCGGATCTCTTTTCTCCTAT 59.423 47.826 0.00 0.00 41.60 2.57
762 907 2.959707 GGAGCGGATCTCTTTTCTCCTA 59.040 50.000 0.00 0.00 41.60 2.94
763 908 1.760029 GGAGCGGATCTCTTTTCTCCT 59.240 52.381 0.00 0.00 41.60 3.69
764 909 1.760029 AGGAGCGGATCTCTTTTCTCC 59.240 52.381 0.00 0.00 41.60 3.71
765 910 2.820330 CAGGAGCGGATCTCTTTTCTC 58.180 52.381 0.00 0.00 41.60 2.87
766 911 1.134551 GCAGGAGCGGATCTCTTTTCT 60.135 52.381 0.00 0.00 41.60 2.52
767 912 1.294857 GCAGGAGCGGATCTCTTTTC 58.705 55.000 0.00 0.00 41.60 2.29
768 913 0.107459 GGCAGGAGCGGATCTCTTTT 60.107 55.000 0.00 0.00 43.41 2.27
769 914 1.524482 GGCAGGAGCGGATCTCTTT 59.476 57.895 0.00 0.00 43.41 2.52
770 915 2.790791 CGGCAGGAGCGGATCTCTT 61.791 63.158 0.00 0.00 43.11 2.85
771 916 3.222855 CGGCAGGAGCGGATCTCT 61.223 66.667 0.00 0.00 43.11 3.10
772 917 3.219928 TCGGCAGGAGCGGATCTC 61.220 66.667 0.00 0.00 44.00 2.75
776 921 3.296709 GAGTTTCGGCAGGAGCGGA 62.297 63.158 0.00 0.00 46.68 5.54
777 922 2.815647 GAGTTTCGGCAGGAGCGG 60.816 66.667 0.00 0.00 43.41 5.52
778 923 3.181967 CGAGTTTCGGCAGGAGCG 61.182 66.667 0.00 0.00 43.41 5.03
779 924 2.095252 GTCGAGTTTCGGCAGGAGC 61.095 63.158 0.00 0.00 45.01 4.70
800 945 3.211564 TTTGACCCGTCGACCCGTC 62.212 63.158 18.28 18.28 0.00 4.79
801 946 3.225798 TTTGACCCGTCGACCCGT 61.226 61.111 10.58 5.88 0.00 5.28
802 947 2.704342 AAGTTTGACCCGTCGACCCG 62.704 60.000 10.58 2.19 0.00 5.28
803 948 1.070275 AAGTTTGACCCGTCGACCC 59.930 57.895 10.58 0.00 0.00 4.46
804 949 0.249573 TCAAGTTTGACCCGTCGACC 60.250 55.000 10.58 0.00 31.01 4.79
805 950 3.277652 TCAAGTTTGACCCGTCGAC 57.722 52.632 5.18 5.18 31.01 4.20
816 961 0.759060 GGGCCAGGGTTGTCAAGTTT 60.759 55.000 4.39 0.00 0.00 2.66
822 967 1.931635 TATTTTGGGCCAGGGTTGTC 58.068 50.000 6.23 0.00 0.00 3.18
823 968 2.187100 CATATTTTGGGCCAGGGTTGT 58.813 47.619 6.23 0.00 0.00 3.32
833 978 5.868801 CCAGTTACAACTTGCATATTTTGGG 59.131 40.000 0.00 0.00 37.08 4.12
835 980 6.393720 GCCAGTTACAACTTGCATATTTTG 57.606 37.500 11.99 0.00 44.48 2.44
886 1050 9.182214 GGAACGGAAGGATATATACATACAGTA 57.818 37.037 0.00 0.00 37.06 2.74
888 1052 7.974501 GTGGAACGGAAGGATATATACATACAG 59.025 40.741 0.00 0.00 0.00 2.74
889 1053 7.093640 GGTGGAACGGAAGGATATATACATACA 60.094 40.741 0.00 0.00 38.12 2.29
890 1054 7.093640 TGGTGGAACGGAAGGATATATACATAC 60.094 40.741 0.00 0.00 38.12 2.39
895 1059 6.750660 TTTGGTGGAACGGAAGGATATATA 57.249 37.500 0.00 0.00 38.12 0.86
896 1060 5.640158 TTTGGTGGAACGGAAGGATATAT 57.360 39.130 0.00 0.00 38.12 0.86
901 1106 1.422024 TCATTTGGTGGAACGGAAGGA 59.578 47.619 0.00 0.00 38.12 3.36
916 1121 2.681848 CGCTCCTTGCTTCTGATCATTT 59.318 45.455 0.00 0.00 40.11 2.32
921 1126 1.601171 AGCGCTCCTTGCTTCTGAT 59.399 52.632 2.64 0.00 40.48 2.90
922 1127 3.063526 AGCGCTCCTTGCTTCTGA 58.936 55.556 2.64 0.00 40.48 3.27
970 1224 2.267006 CGGTGGATGCTGCTGTCT 59.733 61.111 0.00 0.00 0.00 3.41
977 1231 2.765807 CCTCCTCCGGTGGATGCT 60.766 66.667 24.92 0.00 38.51 3.79
1114 1370 3.642778 ATGGGGTGTTCGCTCGTCG 62.643 63.158 0.00 0.00 40.15 5.12
1115 1371 2.100631 CATGGGGTGTTCGCTCGTC 61.101 63.158 0.00 0.00 0.00 4.20
1116 1372 2.047274 CATGGGGTGTTCGCTCGT 60.047 61.111 0.00 0.00 0.00 4.18
1117 1373 2.047274 ACATGGGGTGTTCGCTCG 60.047 61.111 0.00 0.00 38.01 5.03
1124 1380 1.503347 AGGAAAGGAAACATGGGGTGT 59.497 47.619 0.00 0.00 44.84 4.16
1125 1381 2.171003 GAGGAAAGGAAACATGGGGTG 58.829 52.381 0.00 0.00 0.00 4.61
1126 1382 1.077169 GGAGGAAAGGAAACATGGGGT 59.923 52.381 0.00 0.00 0.00 4.95
1127 1383 1.077005 TGGAGGAAAGGAAACATGGGG 59.923 52.381 0.00 0.00 0.00 4.96
1129 1385 2.167075 GCATGGAGGAAAGGAAACATGG 59.833 50.000 0.00 0.00 36.96 3.66
1153 1432 2.923121 AGTCGAAAGGTATGCATGCAT 58.077 42.857 33.92 33.92 40.19 3.96
1154 1433 2.401583 AGTCGAAAGGTATGCATGCA 57.598 45.000 25.04 25.04 0.00 3.96
1155 1434 3.126858 TGAAAGTCGAAAGGTATGCATGC 59.873 43.478 11.82 11.82 0.00 4.06
1156 1435 4.437390 GGTGAAAGTCGAAAGGTATGCATG 60.437 45.833 10.16 0.00 0.00 4.06
1157 1436 3.689649 GGTGAAAGTCGAAAGGTATGCAT 59.310 43.478 3.79 3.79 0.00 3.96
1159 1438 3.071479 TGGTGAAAGTCGAAAGGTATGC 58.929 45.455 0.00 0.00 0.00 3.14
1160 1439 3.125316 GCTGGTGAAAGTCGAAAGGTATG 59.875 47.826 0.00 0.00 0.00 2.39
1161 1440 3.008049 AGCTGGTGAAAGTCGAAAGGTAT 59.992 43.478 0.00 0.00 0.00 2.73
1162 1441 2.367567 AGCTGGTGAAAGTCGAAAGGTA 59.632 45.455 0.00 0.00 0.00 3.08
1163 1442 1.141053 AGCTGGTGAAAGTCGAAAGGT 59.859 47.619 0.00 0.00 0.00 3.50
1164 1443 1.532868 CAGCTGGTGAAAGTCGAAAGG 59.467 52.381 5.57 0.00 0.00 3.11
1165 1444 2.483876 TCAGCTGGTGAAAGTCGAAAG 58.516 47.619 15.13 0.00 29.64 2.62
1166 1445 2.613026 TCAGCTGGTGAAAGTCGAAA 57.387 45.000 15.13 0.00 29.64 3.46
1167 1446 2.839486 ATCAGCTGGTGAAAGTCGAA 57.161 45.000 15.13 0.00 39.19 3.71
1168 1447 2.037121 TGAATCAGCTGGTGAAAGTCGA 59.963 45.455 15.13 0.00 39.19 4.20
1169 1448 2.158449 GTGAATCAGCTGGTGAAAGTCG 59.842 50.000 15.13 0.00 39.19 4.18
1170 1449 2.485814 GGTGAATCAGCTGGTGAAAGTC 59.514 50.000 15.13 11.62 39.19 3.01
1171 1450 2.508526 GGTGAATCAGCTGGTGAAAGT 58.491 47.619 15.13 2.30 39.19 2.66
1177 1456 0.107508 CATCGGGTGAATCAGCTGGT 60.108 55.000 19.64 11.28 38.59 4.00
1179 1458 0.463295 AGCATCGGGTGAATCAGCTG 60.463 55.000 14.59 14.59 39.31 4.24
1180 1459 0.463295 CAGCATCGGGTGAATCAGCT 60.463 55.000 12.42 0.00 45.29 4.24
1316 1599 1.072666 GTAGTTCCGCACGTAACCCG 61.073 60.000 0.00 0.00 44.03 5.28
1334 1617 0.739561 GACATAGAAGACGGCGAGGT 59.260 55.000 16.62 0.00 0.00 3.85
1339 1622 2.197577 GAGCAAGACATAGAAGACGGC 58.802 52.381 0.00 0.00 0.00 5.68
1342 1625 3.129638 ACGAGGAGCAAGACATAGAAGAC 59.870 47.826 0.00 0.00 0.00 3.01
1349 1632 1.153745 GCGACGAGGAGCAAGACAT 60.154 57.895 0.00 0.00 0.00 3.06
1446 1732 2.660552 AAACACGGTCAGGCGACG 60.661 61.111 0.00 0.00 43.61 5.12
1466 1752 1.682257 TCCACACGGCATGGAATCA 59.318 52.632 2.36 0.00 43.43 2.57
1485 1771 0.764890 TCTTGTTGGGGGACTGACAG 59.235 55.000 0.00 0.00 0.00 3.51
1496 1782 4.414852 CTCGCCACAAATAATCTTGTTGG 58.585 43.478 0.00 0.00 37.43 3.77
1501 1787 4.222124 AGACCTCGCCACAAATAATCTT 57.778 40.909 0.00 0.00 0.00 2.40
1512 1798 1.367471 CAGTGACAAGACCTCGCCA 59.633 57.895 0.00 0.00 0.00 5.69
1636 1922 5.393787 CCGGGTACGTGCTCATTGTATATAT 60.394 44.000 3.90 0.00 38.78 0.86
1637 1923 4.082625 CCGGGTACGTGCTCATTGTATATA 60.083 45.833 3.90 0.00 38.78 0.86
1647 1933 1.012486 CAAAGACCGGGTACGTGCTC 61.012 60.000 6.32 0.00 38.78 4.26
1653 1939 2.685850 ACTATGCAAAGACCGGGTAC 57.314 50.000 6.32 0.00 0.00 3.34
1654 1940 3.133362 CCTAACTATGCAAAGACCGGGTA 59.867 47.826 6.32 0.00 0.00 3.69
1689 1975 1.836802 GGGAGCAAATTTATGGGCCAA 59.163 47.619 11.89 0.00 0.00 4.52
1696 1982 3.631250 ACGGATGTGGGAGCAAATTTAT 58.369 40.909 0.00 0.00 0.00 1.40
1720 2006 6.166982 GGCCAACTTCTATATCTGTATCCAC 58.833 44.000 0.00 0.00 0.00 4.02
1725 2011 5.843969 TGGATGGCCAACTTCTATATCTGTA 59.156 40.000 10.96 0.00 42.49 2.74
1789 2075 3.998099 TGTTTGCATGAATTTCGTCCA 57.002 38.095 0.00 0.00 0.00 4.02
1810 2097 7.392953 TGCTTTGATTTATATGAATATCCGCCA 59.607 33.333 0.00 0.00 0.00 5.69
1877 2164 4.345837 CGGTAGGATATGTTTAGGGTCCAA 59.654 45.833 0.00 0.00 0.00 3.53
1890 2179 1.533273 AGGCACCGCGGTAGGATAT 60.533 57.895 33.70 11.18 34.73 1.63
1972 2261 1.607251 CGAGTTTTGAACCCCGCTACT 60.607 52.381 0.00 0.00 0.00 2.57
1990 2280 0.464036 ACTGCACCTTCACTTCACGA 59.536 50.000 0.00 0.00 0.00 4.35
2081 2374 0.312416 CTTCGAGGATGAGTAGGGCG 59.688 60.000 0.00 0.00 0.00 6.13
2134 2428 3.135348 ACATCCATCATCGACCTCATGTT 59.865 43.478 0.00 0.00 0.00 2.71
2137 2431 2.038164 CCACATCCATCATCGACCTCAT 59.962 50.000 0.00 0.00 0.00 2.90
2214 2509 1.290324 CGCCAGCTATGCGTCCTAT 59.710 57.895 18.68 0.00 46.59 2.57
2237 2532 1.004277 GCAGACGGTCGTGAACTCTG 61.004 60.000 0.00 2.97 0.00 3.35
2238 2533 1.286260 GCAGACGGTCGTGAACTCT 59.714 57.895 0.00 0.00 0.00 3.24
2266 2561 3.357079 GGCTGTGGTCGCACAAGG 61.357 66.667 0.00 0.00 34.35 3.61
2322 2633 1.840650 AGGCGCTCTATGAGGCCAT 60.841 57.895 20.65 0.00 43.47 4.40
2340 2651 2.985282 CTTCTTTGCGGGGCAGCA 60.985 61.111 2.71 2.71 46.54 4.41
2346 2657 2.724839 CGAAATCGAACTTCTTTGCGGG 60.725 50.000 0.00 0.00 43.02 6.13
2362 2673 3.202001 CCATGACCGCGGCGAAAT 61.202 61.111 28.58 11.06 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.