Multiple sequence alignment - TraesCS7B01G053000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G053000 chr7B 100.000 2672 0 0 1 2672 55855166 55852495 0.000000e+00 4935.0
1 TraesCS7B01G053000 chr7D 90.017 1783 106 32 933 2672 100281444 100279691 0.000000e+00 2241.0
2 TraesCS7B01G053000 chr7D 94.203 138 7 1 260 397 100282003 100281867 2.700000e-50 209.0
3 TraesCS7B01G053000 chr7D 97.297 74 2 0 195 268 100283032 100282959 2.790000e-25 126.0
4 TraesCS7B01G053000 chr7D 82.390 159 10 9 32 185 100283301 100283156 3.610000e-24 122.0
5 TraesCS7B01G053000 chr7D 94.643 56 3 0 955 1010 63047478 63047533 1.320000e-13 87.9
6 TraesCS7B01G053000 chr7D 91.228 57 5 0 1516 1572 100283621 100283565 7.930000e-11 78.7
7 TraesCS7B01G053000 chr7A 90.103 1546 81 30 1162 2672 102538137 102536629 0.000000e+00 1941.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G053000 chr7B 55852495 55855166 2671 True 4935.00 4935 100.000 1 2672 1 chr7B.!!$R1 2671
1 TraesCS7B01G053000 chr7D 100279691 100283621 3930 True 555.34 2241 91.027 32 2672 5 chr7D.!!$R1 2640
2 TraesCS7B01G053000 chr7A 102536629 102538137 1508 True 1941.00 1941 90.103 1162 2672 1 chr7A.!!$R1 1510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 1774 0.034574 TGCCACGTGGGATAATTGCT 60.035 50.0 34.58 0.0 40.01 3.91 F
1187 2590 0.036164 CGTGTCTCCCAATCCAACCA 59.964 55.0 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1639 3076 0.096628 ATGTAGTCGTCGTCGCTGTC 59.903 55.000 0.00 0.0 36.96 3.51 R
2084 3548 3.634910 TGTGCTACTCTGTGTTGTACTGA 59.365 43.478 11.82 0.0 37.72 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.804843 TCCGTTGAGTTTAAGGAATTTTACA 57.195 32.000 0.00 0.00 0.00 2.41
34 35 8.398878 TCCGTTGAGTTTAAGGAATTTTACAT 57.601 30.769 0.00 0.00 0.00 2.29
75 365 5.501156 AGGAAAGAACGCATAAAGGAGATT 58.499 37.500 0.00 0.00 0.00 2.40
80 370 9.620660 GAAAGAACGCATAAAGGAGATTAAAAA 57.379 29.630 0.00 0.00 0.00 1.94
102 392 4.663636 AACGAGCAAAAGAAATCCTACG 57.336 40.909 0.00 0.00 0.00 3.51
103 393 3.660865 ACGAGCAAAAGAAATCCTACGT 58.339 40.909 0.00 0.00 0.00 3.57
104 394 3.432252 ACGAGCAAAAGAAATCCTACGTG 59.568 43.478 0.00 0.00 0.00 4.49
105 395 3.725010 CGAGCAAAAGAAATCCTACGTGC 60.725 47.826 0.00 0.00 0.00 5.34
106 396 3.146066 AGCAAAAGAAATCCTACGTGCA 58.854 40.909 0.00 0.00 31.92 4.57
107 397 3.189287 AGCAAAAGAAATCCTACGTGCAG 59.811 43.478 0.00 0.00 31.92 4.41
110 400 5.327091 CAAAAGAAATCCTACGTGCAGATG 58.673 41.667 0.00 0.00 0.00 2.90
115 405 1.990799 TCCTACGTGCAGATGAAACG 58.009 50.000 0.00 6.87 42.82 3.60
130 420 4.536364 TGAAACGAGCAAAAGAACTCTG 57.464 40.909 0.00 0.00 0.00 3.35
152 442 3.545633 GAACTGTTCGTGCAGATGAAAC 58.454 45.455 4.57 0.00 39.62 2.78
185 480 4.171234 TCCTCTGACCTCTTGGAAGAAAT 58.829 43.478 0.00 0.00 34.03 2.17
186 481 4.599241 TCCTCTGACCTCTTGGAAGAAATT 59.401 41.667 0.00 0.00 34.03 1.82
187 482 4.940654 CCTCTGACCTCTTGGAAGAAATTC 59.059 45.833 0.00 0.00 34.03 2.17
188 483 5.280419 CCTCTGACCTCTTGGAAGAAATTCT 60.280 44.000 0.00 0.00 34.03 2.40
189 484 6.070538 CCTCTGACCTCTTGGAAGAAATTCTA 60.071 42.308 0.00 0.00 34.03 2.10
190 485 7.365473 CCTCTGACCTCTTGGAAGAAATTCTAT 60.365 40.741 0.00 0.00 34.03 1.98
191 486 7.334090 TCTGACCTCTTGGAAGAAATTCTATG 58.666 38.462 0.00 0.00 34.03 2.23
192 487 7.020827 TGACCTCTTGGAAGAAATTCTATGT 57.979 36.000 0.00 0.00 34.03 2.29
193 488 6.881065 TGACCTCTTGGAAGAAATTCTATGTG 59.119 38.462 0.00 0.00 34.03 3.21
238 647 5.779529 ATGCAAATCCATTCATGTAGGTC 57.220 39.130 0.00 0.00 0.00 3.85
284 1657 8.622948 AGTTTTTAGAGACCTACAAATCAAGG 57.377 34.615 0.00 0.00 38.93 3.61
286 1659 9.063615 GTTTTTAGAGACCTACAAATCAAGGAA 57.936 33.333 0.00 0.00 36.66 3.36
292 1665 4.729868 ACCTACAAATCAAGGAAGCAACT 58.270 39.130 0.00 0.00 36.66 3.16
294 1667 4.082571 CCTACAAATCAAGGAAGCAACTGG 60.083 45.833 0.00 0.00 34.58 4.00
299 1672 1.988107 TCAAGGAAGCAACTGGGAGAT 59.012 47.619 0.00 0.00 0.00 2.75
374 1747 9.045745 TCTTAGGGCATGTACAATGATGATATA 57.954 33.333 0.00 0.00 0.00 0.86
397 1770 1.490490 AGTGATGCCACGTGGGATAAT 59.510 47.619 37.50 24.13 46.79 1.28
398 1771 2.092429 AGTGATGCCACGTGGGATAATT 60.092 45.455 37.50 26.34 46.79 1.40
399 1772 2.033299 GTGATGCCACGTGGGATAATTG 59.967 50.000 37.50 10.59 46.79 2.32
400 1773 1.001378 GATGCCACGTGGGATAATTGC 60.001 52.381 37.50 22.70 46.79 3.56
401 1774 0.034574 TGCCACGTGGGATAATTGCT 60.035 50.000 34.58 0.00 40.01 3.91
402 1775 1.102978 GCCACGTGGGATAATTGCTT 58.897 50.000 34.58 0.00 40.01 3.91
403 1776 2.294074 GCCACGTGGGATAATTGCTTA 58.706 47.619 34.58 0.00 40.01 3.09
404 1777 2.290641 GCCACGTGGGATAATTGCTTAG 59.709 50.000 34.58 5.52 40.01 2.18
405 1778 3.804036 CCACGTGGGATAATTGCTTAGA 58.196 45.455 27.57 0.00 40.01 2.10
406 1779 4.196193 CCACGTGGGATAATTGCTTAGAA 58.804 43.478 27.57 0.00 40.01 2.10
407 1780 4.638421 CCACGTGGGATAATTGCTTAGAAA 59.362 41.667 27.57 0.00 40.01 2.52
408 1781 5.220854 CCACGTGGGATAATTGCTTAGAAAG 60.221 44.000 27.57 0.00 40.01 2.62
409 1782 5.584649 CACGTGGGATAATTGCTTAGAAAGA 59.415 40.000 7.95 0.00 0.00 2.52
410 1783 5.817816 ACGTGGGATAATTGCTTAGAAAGAG 59.182 40.000 0.00 0.00 0.00 2.85
411 1784 6.049149 CGTGGGATAATTGCTTAGAAAGAGA 58.951 40.000 0.00 0.00 0.00 3.10
412 1785 6.201806 CGTGGGATAATTGCTTAGAAAGAGAG 59.798 42.308 0.00 0.00 0.00 3.20
413 1786 7.275920 GTGGGATAATTGCTTAGAAAGAGAGA 58.724 38.462 0.00 0.00 0.00 3.10
414 1787 7.440856 GTGGGATAATTGCTTAGAAAGAGAGAG 59.559 40.741 0.00 0.00 0.00 3.20
415 1788 7.345653 TGGGATAATTGCTTAGAAAGAGAGAGA 59.654 37.037 0.00 0.00 0.00 3.10
416 1789 7.872483 GGGATAATTGCTTAGAAAGAGAGAGAG 59.128 40.741 0.00 0.00 0.00 3.20
417 1790 8.637986 GGATAATTGCTTAGAAAGAGAGAGAGA 58.362 37.037 0.00 0.00 0.00 3.10
418 1791 9.683069 GATAATTGCTTAGAAAGAGAGAGAGAG 57.317 37.037 0.00 0.00 0.00 3.20
419 1792 7.716799 AATTGCTTAGAAAGAGAGAGAGAGA 57.283 36.000 0.00 0.00 0.00 3.10
420 1793 6.757897 TTGCTTAGAAAGAGAGAGAGAGAG 57.242 41.667 0.00 0.00 0.00 3.20
421 1794 6.061022 TGCTTAGAAAGAGAGAGAGAGAGA 57.939 41.667 0.00 0.00 0.00 3.10
422 1795 6.115446 TGCTTAGAAAGAGAGAGAGAGAGAG 58.885 44.000 0.00 0.00 0.00 3.20
423 1796 6.070251 TGCTTAGAAAGAGAGAGAGAGAGAGA 60.070 42.308 0.00 0.00 0.00 3.10
424 1797 6.481644 GCTTAGAAAGAGAGAGAGAGAGAGAG 59.518 46.154 0.00 0.00 0.00 3.20
425 1798 7.633772 GCTTAGAAAGAGAGAGAGAGAGAGAGA 60.634 44.444 0.00 0.00 0.00 3.10
426 1799 6.232581 AGAAAGAGAGAGAGAGAGAGAGAG 57.767 45.833 0.00 0.00 0.00 3.20
427 1800 5.960811 AGAAAGAGAGAGAGAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
428 1801 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
429 1802 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
430 1803 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
431 1804 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
432 1805 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
433 1806 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
434 1807 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
435 1808 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
436 1809 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
437 1810 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
438 1811 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
439 1812 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
440 1813 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
441 1814 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
442 1815 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
443 1816 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
444 1817 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
445 1818 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
446 1819 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
447 1820 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
448 1821 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
449 1822 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
450 1823 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
451 1824 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
452 1825 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
453 1826 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
454 1827 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
455 1828 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
456 1829 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
457 1830 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
458 1831 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
459 1832 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
460 1833 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
461 1834 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
462 1835 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
463 1836 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
464 1837 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
465 1838 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
466 1839 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
467 1840 5.960811 AGAGAGAGAGAGAGAGAGAGAGAAA 59.039 44.000 0.00 0.00 0.00 2.52
468 1841 6.614906 AGAGAGAGAGAGAGAGAGAGAGAAAT 59.385 42.308 0.00 0.00 0.00 2.17
469 1842 6.590068 AGAGAGAGAGAGAGAGAGAGAAATG 58.410 44.000 0.00 0.00 0.00 2.32
470 1843 6.385176 AGAGAGAGAGAGAGAGAGAGAAATGA 59.615 42.308 0.00 0.00 0.00 2.57
471 1844 6.962182 AGAGAGAGAGAGAGAGAGAAATGAA 58.038 40.000 0.00 0.00 0.00 2.57
472 1845 7.405292 AGAGAGAGAGAGAGAGAGAAATGAAA 58.595 38.462 0.00 0.00 0.00 2.69
473 1846 7.337942 AGAGAGAGAGAGAGAGAGAAATGAAAC 59.662 40.741 0.00 0.00 0.00 2.78
474 1847 6.947733 AGAGAGAGAGAGAGAGAAATGAAACA 59.052 38.462 0.00 0.00 0.00 2.83
475 1848 7.451255 AGAGAGAGAGAGAGAGAAATGAAACAA 59.549 37.037 0.00 0.00 0.00 2.83
476 1849 7.961351 AGAGAGAGAGAGAGAAATGAAACAAA 58.039 34.615 0.00 0.00 0.00 2.83
477 1850 8.428063 AGAGAGAGAGAGAGAAATGAAACAAAA 58.572 33.333 0.00 0.00 0.00 2.44
478 1851 8.970859 AGAGAGAGAGAGAAATGAAACAAAAA 57.029 30.769 0.00 0.00 0.00 1.94
479 1852 9.054922 AGAGAGAGAGAGAAATGAAACAAAAAG 57.945 33.333 0.00 0.00 0.00 2.27
480 1853 8.970859 AGAGAGAGAGAAATGAAACAAAAAGA 57.029 30.769 0.00 0.00 0.00 2.52
481 1854 9.401058 AGAGAGAGAGAAATGAAACAAAAAGAA 57.599 29.630 0.00 0.00 0.00 2.52
505 1878 9.736023 GAAAAACAGATGAAACTTGTTGTATCT 57.264 29.630 6.83 6.83 0.00 1.98
511 1884 8.173775 CAGATGAAACTTGTTGTATCTCACATC 58.826 37.037 0.00 0.00 36.90 3.06
526 1899 9.347934 GTATCTCACATCGGATAATAGTGAAAG 57.652 37.037 9.34 1.66 38.58 2.62
528 1901 8.007405 TCTCACATCGGATAATAGTGAAAGAA 57.993 34.615 9.34 0.00 38.58 2.52
529 1902 8.138074 TCTCACATCGGATAATAGTGAAAGAAG 58.862 37.037 9.34 0.59 38.58 2.85
530 1903 8.007405 TCACATCGGATAATAGTGAAAGAAGA 57.993 34.615 6.45 0.00 36.39 2.87
533 1906 9.838339 ACATCGGATAATAGTGAAAGAAGATTT 57.162 29.630 0.00 0.00 0.00 2.17
535 1908 8.662781 TCGGATAATAGTGAAAGAAGATTTGG 57.337 34.615 0.00 0.00 0.00 3.28
536 1909 7.715249 TCGGATAATAGTGAAAGAAGATTTGGG 59.285 37.037 0.00 0.00 0.00 4.12
537 1910 7.520614 CGGATAATAGTGAAAGAAGATTTGGGC 60.521 40.741 0.00 0.00 0.00 5.36
538 1911 5.567138 AATAGTGAAAGAAGATTTGGGCG 57.433 39.130 0.00 0.00 0.00 6.13
546 1919 2.750237 GATTTGGGCGGCTTCGGT 60.750 61.111 9.56 0.00 0.00 4.69
547 1920 2.282887 ATTTGGGCGGCTTCGGTT 60.283 55.556 9.56 0.00 0.00 4.44
551 1924 2.358984 GGGCGGCTTCGGTTTGTA 60.359 61.111 9.56 0.00 0.00 2.41
563 1936 3.137533 TCGGTTTGTAGTTTTTACCCCG 58.862 45.455 0.00 0.00 0.00 5.73
593 1973 4.760047 CCGCTCCAAGTCCACCCG 62.760 72.222 0.00 0.00 0.00 5.28
606 1986 1.450211 CACCCGTTGGACTTGGACT 59.550 57.895 0.00 0.00 34.81 3.85
614 1994 3.444034 CGTTGGACTTGGACTCTGATCTA 59.556 47.826 0.00 0.00 0.00 1.98
615 1995 4.439426 CGTTGGACTTGGACTCTGATCTAG 60.439 50.000 0.00 0.00 0.00 2.43
637 2017 0.530744 CCGAACATGACCGAAGAGGA 59.469 55.000 0.00 0.00 45.00 3.71
639 2019 1.472878 CGAACATGACCGAAGAGGAGA 59.527 52.381 0.00 0.00 45.00 3.71
655 2038 1.977129 GGAGAGAGGAGATGGGAATGG 59.023 57.143 0.00 0.00 0.00 3.16
664 2047 2.368221 GAGATGGGAATGGGAGTGAGAG 59.632 54.545 0.00 0.00 0.00 3.20
665 2048 2.122768 GATGGGAATGGGAGTGAGAGT 58.877 52.381 0.00 0.00 0.00 3.24
667 2050 3.199442 TGGGAATGGGAGTGAGAGTTA 57.801 47.619 0.00 0.00 0.00 2.24
668 2051 3.107601 TGGGAATGGGAGTGAGAGTTAG 58.892 50.000 0.00 0.00 0.00 2.34
669 2052 2.436173 GGGAATGGGAGTGAGAGTTAGG 59.564 54.545 0.00 0.00 0.00 2.69
670 2053 2.158885 GGAATGGGAGTGAGAGTTAGGC 60.159 54.545 0.00 0.00 0.00 3.93
671 2054 2.559381 ATGGGAGTGAGAGTTAGGCT 57.441 50.000 0.00 0.00 0.00 4.58
672 2055 2.327325 TGGGAGTGAGAGTTAGGCTT 57.673 50.000 0.00 0.00 0.00 4.35
673 2056 3.468071 TGGGAGTGAGAGTTAGGCTTA 57.532 47.619 0.00 0.00 0.00 3.09
674 2057 3.366396 TGGGAGTGAGAGTTAGGCTTAG 58.634 50.000 0.00 0.00 0.00 2.18
675 2058 2.696187 GGGAGTGAGAGTTAGGCTTAGG 59.304 54.545 0.00 0.00 0.00 2.69
676 2059 2.696187 GGAGTGAGAGTTAGGCTTAGGG 59.304 54.545 0.00 0.00 0.00 3.53
677 2060 3.367321 GAGTGAGAGTTAGGCTTAGGGT 58.633 50.000 0.00 0.00 0.00 4.34
678 2061 3.770388 GAGTGAGAGTTAGGCTTAGGGTT 59.230 47.826 0.00 0.00 0.00 4.11
679 2062 4.168883 AGTGAGAGTTAGGCTTAGGGTTT 58.831 43.478 0.00 0.00 0.00 3.27
680 2063 4.020128 AGTGAGAGTTAGGCTTAGGGTTTG 60.020 45.833 0.00 0.00 0.00 2.93
681 2064 3.263425 TGAGAGTTAGGCTTAGGGTTTGG 59.737 47.826 0.00 0.00 0.00 3.28
682 2065 3.257578 AGAGTTAGGCTTAGGGTTTGGT 58.742 45.455 0.00 0.00 0.00 3.67
683 2066 3.009143 AGAGTTAGGCTTAGGGTTTGGTG 59.991 47.826 0.00 0.00 0.00 4.17
687 2070 1.302993 GCTTAGGGTTTGGTGCGGA 60.303 57.895 0.00 0.00 0.00 5.54
690 2073 1.472480 CTTAGGGTTTGGTGCGGATTG 59.528 52.381 0.00 0.00 0.00 2.67
692 2075 1.605165 GGGTTTGGTGCGGATTGGA 60.605 57.895 0.00 0.00 0.00 3.53
693 2076 1.182385 GGGTTTGGTGCGGATTGGAA 61.182 55.000 0.00 0.00 0.00 3.53
701 2084 1.153249 GCGGATTGGAACGGATGGA 60.153 57.895 0.00 0.00 0.00 3.41
710 2093 1.202580 GGAACGGATGGATCAGGACAG 60.203 57.143 0.00 0.00 0.00 3.51
714 2097 1.348008 GGATGGATCAGGACAGGCCA 61.348 60.000 5.01 0.00 40.02 5.36
733 2125 3.817787 CATGGCCAGACATGTCCG 58.182 61.111 22.21 12.33 42.48 4.79
736 2128 2.359850 GGCCAGACATGTCCGCAA 60.360 61.111 27.53 0.00 0.00 4.85
745 2137 3.511146 AGACATGTCCGCAAAATCCAATT 59.489 39.130 22.21 0.00 0.00 2.32
750 2142 0.998669 CCGCAAAATCCAATTTCCGC 59.001 50.000 0.00 0.00 0.00 5.54
753 2145 2.011548 GCAAAATCCAATTTCCGCCCC 61.012 52.381 0.00 0.00 0.00 5.80
754 2146 0.908910 AAAATCCAATTTCCGCCCCC 59.091 50.000 0.00 0.00 0.00 5.40
775 2167 4.599041 CCACATTTGGGATAAGGTTGAGA 58.401 43.478 0.00 0.00 39.57 3.27
776 2168 4.399303 CCACATTTGGGATAAGGTTGAGAC 59.601 45.833 0.00 0.00 39.57 3.36
782 2174 3.132289 TGGGATAAGGTTGAGACGATCAC 59.868 47.826 0.00 0.00 37.77 3.06
784 2176 3.066342 GGATAAGGTTGAGACGATCACGA 59.934 47.826 0.00 0.00 42.66 4.35
787 2179 1.611977 AGGTTGAGACGATCACGACAA 59.388 47.619 0.00 0.00 42.66 3.18
809 2201 6.071391 ACAATTCGGATAAATGAGTGGCTTTT 60.071 34.615 0.00 0.00 0.00 2.27
816 2208 6.096001 GGATAAATGAGTGGCTTTTGTGAGAT 59.904 38.462 0.00 0.00 0.00 2.75
821 2213 5.591099 TGAGTGGCTTTTGTGAGATTTTTC 58.409 37.500 0.00 0.00 0.00 2.29
822 2214 4.610945 AGTGGCTTTTGTGAGATTTTTCG 58.389 39.130 0.00 0.00 0.00 3.46
823 2215 3.735746 GTGGCTTTTGTGAGATTTTTCGG 59.264 43.478 0.00 0.00 0.00 4.30
824 2216 3.634448 TGGCTTTTGTGAGATTTTTCGGA 59.366 39.130 0.00 0.00 0.00 4.55
825 2217 3.981416 GGCTTTTGTGAGATTTTTCGGAC 59.019 43.478 0.00 0.00 0.00 4.79
827 2219 4.676924 GCTTTTGTGAGATTTTTCGGACAG 59.323 41.667 0.00 0.00 0.00 3.51
828 2220 5.733373 GCTTTTGTGAGATTTTTCGGACAGT 60.733 40.000 0.00 0.00 0.00 3.55
829 2221 5.418310 TTTGTGAGATTTTTCGGACAGTC 57.582 39.130 0.00 0.00 0.00 3.51
830 2222 3.399330 TGTGAGATTTTTCGGACAGTCC 58.601 45.455 9.92 9.92 0.00 3.85
845 2237 4.215399 GGACAGTCCGTTCAATTCAATTCA 59.785 41.667 3.05 0.00 0.00 2.57
846 2238 5.106157 GGACAGTCCGTTCAATTCAATTCAT 60.106 40.000 3.05 0.00 0.00 2.57
850 2242 5.939883 AGTCCGTTCAATTCAATTCATCTGA 59.060 36.000 0.00 0.00 0.00 3.27
854 2246 6.525628 CCGTTCAATTCAATTCATCTGAACAG 59.474 38.462 10.91 0.00 41.62 3.16
873 2265 5.787953 ACAGATGATGTGACTATGAGGAG 57.212 43.478 0.00 0.00 41.91 3.69
876 2268 5.481122 CAGATGATGTGACTATGAGGAGGAT 59.519 44.000 0.00 0.00 0.00 3.24
877 2269 6.014413 CAGATGATGTGACTATGAGGAGGATT 60.014 42.308 0.00 0.00 0.00 3.01
889 2284 3.116977 TGAGGAGGATTGGAGATGCTCTA 60.117 47.826 7.34 0.00 36.82 2.43
897 2292 2.121948 TGGAGATGCTCTAATGGTGCT 58.878 47.619 0.00 0.00 35.67 4.40
899 2294 3.054139 TGGAGATGCTCTAATGGTGCTTT 60.054 43.478 0.00 0.00 35.67 3.51
900 2295 3.950395 GGAGATGCTCTAATGGTGCTTTT 59.050 43.478 0.00 0.00 35.67 2.27
901 2296 4.400567 GGAGATGCTCTAATGGTGCTTTTT 59.599 41.667 0.00 0.00 35.67 1.94
902 2297 5.449725 GGAGATGCTCTAATGGTGCTTTTTC 60.450 44.000 0.00 0.00 35.67 2.29
903 2298 5.012239 AGATGCTCTAATGGTGCTTTTTCA 58.988 37.500 0.00 0.00 35.67 2.69
904 2299 5.477984 AGATGCTCTAATGGTGCTTTTTCAA 59.522 36.000 0.00 0.00 35.67 2.69
905 2300 4.870363 TGCTCTAATGGTGCTTTTTCAAC 58.130 39.130 0.00 0.00 35.67 3.18
906 2301 4.584325 TGCTCTAATGGTGCTTTTTCAACT 59.416 37.500 0.00 0.00 35.67 3.16
907 2302 5.068987 TGCTCTAATGGTGCTTTTTCAACTT 59.931 36.000 0.00 0.00 35.67 2.66
908 2303 5.631096 GCTCTAATGGTGCTTTTTCAACTTC 59.369 40.000 0.00 0.00 0.00 3.01
909 2304 6.707440 TCTAATGGTGCTTTTTCAACTTCA 57.293 33.333 0.00 0.00 0.00 3.02
910 2305 7.106439 TCTAATGGTGCTTTTTCAACTTCAA 57.894 32.000 0.00 0.00 0.00 2.69
911 2306 6.978080 TCTAATGGTGCTTTTTCAACTTCAAC 59.022 34.615 0.00 0.00 0.00 3.18
912 2307 4.799564 TGGTGCTTTTTCAACTTCAACT 57.200 36.364 0.00 0.00 0.00 3.16
913 2308 5.146010 TGGTGCTTTTTCAACTTCAACTT 57.854 34.783 0.00 0.00 0.00 2.66
914 2309 5.546526 TGGTGCTTTTTCAACTTCAACTTT 58.453 33.333 0.00 0.00 0.00 2.66
915 2310 5.994668 TGGTGCTTTTTCAACTTCAACTTTT 59.005 32.000 0.00 0.00 0.00 2.27
916 2311 6.147000 TGGTGCTTTTTCAACTTCAACTTTTC 59.853 34.615 0.00 0.00 0.00 2.29
917 2312 6.402118 GGTGCTTTTTCAACTTCAACTTTTCC 60.402 38.462 0.00 0.00 0.00 3.13
918 2313 5.641636 TGCTTTTTCAACTTCAACTTTTCCC 59.358 36.000 0.00 0.00 0.00 3.97
919 2314 5.064707 GCTTTTTCAACTTCAACTTTTCCCC 59.935 40.000 0.00 0.00 0.00 4.81
920 2315 4.379339 TTTCAACTTCAACTTTTCCCCG 57.621 40.909 0.00 0.00 0.00 5.73
921 2316 1.679153 TCAACTTCAACTTTTCCCCGC 59.321 47.619 0.00 0.00 0.00 6.13
922 2317 1.407258 CAACTTCAACTTTTCCCCGCA 59.593 47.619 0.00 0.00 0.00 5.69
923 2318 1.770294 ACTTCAACTTTTCCCCGCAA 58.230 45.000 0.00 0.00 0.00 4.85
924 2319 2.104170 ACTTCAACTTTTCCCCGCAAA 58.896 42.857 0.00 0.00 0.00 3.68
925 2320 2.159156 ACTTCAACTTTTCCCCGCAAAC 60.159 45.455 0.00 0.00 0.00 2.93
926 2321 1.475403 TCAACTTTTCCCCGCAAACA 58.525 45.000 0.00 0.00 0.00 2.83
927 2322 1.825474 TCAACTTTTCCCCGCAAACAA 59.175 42.857 0.00 0.00 0.00 2.83
928 2323 2.233922 TCAACTTTTCCCCGCAAACAAA 59.766 40.909 0.00 0.00 0.00 2.83
929 2324 3.003480 CAACTTTTCCCCGCAAACAAAA 58.997 40.909 0.00 0.00 0.00 2.44
930 2325 2.899976 ACTTTTCCCCGCAAACAAAAG 58.100 42.857 0.00 0.00 40.30 2.27
931 2326 2.209273 CTTTTCCCCGCAAACAAAAGG 58.791 47.619 0.00 0.00 33.84 3.11
937 2332 1.136110 CCCGCAAACAAAAGGAACTGT 59.864 47.619 0.00 0.00 40.86 3.55
993 2389 5.481473 ACTGGAATGTTGGTTGATGCTTATT 59.519 36.000 0.00 0.00 0.00 1.40
994 2390 5.964758 TGGAATGTTGGTTGATGCTTATTC 58.035 37.500 0.00 0.00 0.00 1.75
995 2391 5.479724 TGGAATGTTGGTTGATGCTTATTCA 59.520 36.000 0.00 0.00 0.00 2.57
996 2392 6.038356 GGAATGTTGGTTGATGCTTATTCAG 58.962 40.000 0.00 0.00 0.00 3.02
998 2394 5.885230 TGTTGGTTGATGCTTATTCAGAG 57.115 39.130 0.00 0.00 0.00 3.35
1000 2396 6.003326 TGTTGGTTGATGCTTATTCAGAGAA 58.997 36.000 0.00 0.00 0.00 2.87
1001 2397 6.660521 TGTTGGTTGATGCTTATTCAGAGAAT 59.339 34.615 0.00 0.00 0.00 2.40
1002 2398 6.688637 TGGTTGATGCTTATTCAGAGAATG 57.311 37.500 2.65 0.00 0.00 2.67
1003 2399 6.417258 TGGTTGATGCTTATTCAGAGAATGA 58.583 36.000 2.65 0.00 35.62 2.57
1005 2401 6.765036 GGTTGATGCTTATTCAGAGAATGAGA 59.235 38.462 13.62 2.47 39.68 3.27
1010 2411 6.511416 TGCTTATTCAGAGAATGAGAGTAGC 58.489 40.000 13.62 8.03 39.68 3.58
1011 2412 5.629020 GCTTATTCAGAGAATGAGAGTAGCG 59.371 44.000 13.62 0.00 39.68 4.26
1015 2416 4.987832 TCAGAGAATGAGAGTAGCGTTTC 58.012 43.478 0.00 0.00 32.77 2.78
1043 2446 2.739379 TGTCGCTCAATACGCAATTTGA 59.261 40.909 0.00 0.00 0.00 2.69
1044 2447 3.373748 TGTCGCTCAATACGCAATTTGAT 59.626 39.130 0.00 0.00 0.00 2.57
1087 2490 0.608640 ACCCGAGCTGACCTGTAAAG 59.391 55.000 0.00 0.00 0.00 1.85
1100 2503 0.759959 TGTAAAGCGGGACCAACAGA 59.240 50.000 0.00 0.00 0.00 3.41
1101 2504 1.154197 GTAAAGCGGGACCAACAGAC 58.846 55.000 0.00 0.00 0.00 3.51
1102 2505 0.759959 TAAAGCGGGACCAACAGACA 59.240 50.000 0.00 0.00 0.00 3.41
1103 2506 0.535102 AAAGCGGGACCAACAGACAG 60.535 55.000 0.00 0.00 0.00 3.51
1104 2507 1.407656 AAGCGGGACCAACAGACAGA 61.408 55.000 0.00 0.00 0.00 3.41
1105 2508 1.374758 GCGGGACCAACAGACAGAG 60.375 63.158 0.00 0.00 0.00 3.35
1107 2510 1.821061 CGGGACCAACAGACAGAGCT 61.821 60.000 0.00 0.00 0.00 4.09
1108 2511 0.321122 GGGACCAACAGACAGAGCTG 60.321 60.000 0.00 0.00 41.63 4.24
1109 2512 0.952984 GGACCAACAGACAGAGCTGC 60.953 60.000 0.00 0.00 39.51 5.25
1114 2517 3.117171 CAGACAGAGCTGCCGTGC 61.117 66.667 0.00 0.00 0.00 5.34
1115 2518 4.385405 AGACAGAGCTGCCGTGCC 62.385 66.667 0.00 0.00 0.00 5.01
1116 2519 4.385405 GACAGAGCTGCCGTGCCT 62.385 66.667 0.00 0.00 0.00 4.75
1117 2520 4.385405 ACAGAGCTGCCGTGCCTC 62.385 66.667 0.00 0.00 0.00 4.70
1126 2529 2.357517 CCGTGCCTCGCAGAACTT 60.358 61.111 0.00 0.00 40.08 2.66
1185 2588 0.323629 TCCGTGTCTCCCAATCCAAC 59.676 55.000 0.00 0.00 0.00 3.77
1186 2589 0.676782 CCGTGTCTCCCAATCCAACC 60.677 60.000 0.00 0.00 0.00 3.77
1187 2590 0.036164 CGTGTCTCCCAATCCAACCA 59.964 55.000 0.00 0.00 0.00 3.67
1188 2591 1.826385 GTGTCTCCCAATCCAACCAG 58.174 55.000 0.00 0.00 0.00 4.00
1252 2676 2.671682 GTTGGTCCAGCTCCCCTC 59.328 66.667 0.00 0.00 0.00 4.30
1314 2738 4.329545 GCAACCCAGCCGGAGACA 62.330 66.667 5.05 0.00 34.64 3.41
1447 2871 0.725117 CTCCGTACGCCACCAATTTC 59.275 55.000 10.49 0.00 0.00 2.17
1453 2877 0.893727 ACGCCACCAATTTCACCTCC 60.894 55.000 0.00 0.00 0.00 4.30
1456 2880 0.965363 CCACCAATTTCACCTCCCCG 60.965 60.000 0.00 0.00 0.00 5.73
1473 2909 1.306226 CGTCCCCCTCCCTCTCTTT 60.306 63.158 0.00 0.00 0.00 2.52
1507 2943 3.244770 ACCGTGTTTCTCTCTCTCTCTCT 60.245 47.826 0.00 0.00 0.00 3.10
1508 2944 3.374058 CCGTGTTTCTCTCTCTCTCTCTC 59.626 52.174 0.00 0.00 0.00 3.20
1510 2946 4.589908 GTGTTTCTCTCTCTCTCTCTCCT 58.410 47.826 0.00 0.00 0.00 3.69
1511 2947 4.636206 GTGTTTCTCTCTCTCTCTCTCCTC 59.364 50.000 0.00 0.00 0.00 3.71
1522 2959 0.614979 TCTCTCCTCCCCGTTTCTGG 60.615 60.000 0.00 0.00 0.00 3.86
1523 2960 2.245438 CTCTCCTCCCCGTTTCTGGC 62.245 65.000 0.00 0.00 0.00 4.85
1572 3009 1.043116 TCACCATCCTCGGCTACCTG 61.043 60.000 0.00 0.00 0.00 4.00
1676 3113 0.748367 ATCTACGTCGCCTGAGCAGA 60.748 55.000 0.00 0.00 39.83 4.26
1678 3115 0.798771 CTACGTCGCCTGAGCAGAAC 60.799 60.000 0.00 0.00 39.83 3.01
1679 3116 2.209064 TACGTCGCCTGAGCAGAACC 62.209 60.000 0.00 0.00 39.83 3.62
1680 3117 2.343758 GTCGCCTGAGCAGAACCA 59.656 61.111 0.00 0.00 39.83 3.67
1681 3118 1.739562 GTCGCCTGAGCAGAACCAG 60.740 63.158 0.00 0.00 39.83 4.00
1682 3119 3.123620 CGCCTGAGCAGAACCAGC 61.124 66.667 0.00 0.00 39.83 4.85
1683 3120 2.749441 GCCTGAGCAGAACCAGCC 60.749 66.667 0.00 0.00 39.53 4.85
1684 3121 2.435586 CCTGAGCAGAACCAGCCG 60.436 66.667 0.00 0.00 0.00 5.52
1685 3122 3.123620 CTGAGCAGAACCAGCCGC 61.124 66.667 0.00 0.00 0.00 6.53
1686 3123 4.704833 TGAGCAGAACCAGCCGCC 62.705 66.667 0.00 0.00 0.00 6.13
1702 3139 4.888325 CCGCTCCTCCCCTCCCAT 62.888 72.222 0.00 0.00 0.00 4.00
1703 3140 3.237741 CGCTCCTCCCCTCCCATC 61.238 72.222 0.00 0.00 0.00 3.51
1734 3184 5.836024 TTAGGTTAGTGGAATGAACCAGT 57.164 39.130 5.86 0.00 44.29 4.00
1756 3207 1.141053 CTGTTCCTGCCCCCTGTATAC 59.859 57.143 0.00 0.00 0.00 1.47
1762 3213 1.068127 CTGCCCCCTGTATACGTACAC 59.932 57.143 0.00 0.00 35.94 2.90
1765 3216 2.223900 GCCCCCTGTATACGTACACTTC 60.224 54.545 5.47 0.00 35.94 3.01
1768 3219 2.033801 CCCTGTATACGTACACTTCGGG 59.966 54.545 5.47 8.56 36.69 5.14
1769 3220 2.684881 CCTGTATACGTACACTTCGGGT 59.315 50.000 5.47 0.00 35.94 5.28
1857 3321 0.385390 CCTGGTTCAGTTGTGGTTGC 59.615 55.000 0.00 0.00 0.00 4.17
1901 3365 4.051237 GGGTTCATTTCAACTTTGCTGTC 58.949 43.478 0.00 0.00 0.00 3.51
1969 3433 4.703093 AGAAAACCTTGAGTTCCGACAAAA 59.297 37.500 0.00 0.00 37.88 2.44
2038 3502 4.393062 CGCATGTGAACTGAAGAAGGTATT 59.607 41.667 0.00 0.00 0.00 1.89
2040 3504 6.237942 CGCATGTGAACTGAAGAAGGTATTAG 60.238 42.308 0.00 0.00 0.00 1.73
2056 3520 7.118496 AGGTATTAGTGATCAAAGTGAGAGG 57.882 40.000 0.00 0.00 0.00 3.69
2084 3548 7.092846 ACAACTAAGCCCTAGTGTTTCATCTAT 60.093 37.037 0.00 0.00 40.14 1.98
2085 3549 7.056844 ACTAAGCCCTAGTGTTTCATCTATC 57.943 40.000 0.00 0.00 39.52 2.08
2101 3565 8.575649 TTCATCTATCAGTACAACACAGAGTA 57.424 34.615 0.00 0.00 0.00 2.59
2122 3586 6.904626 AGTAGCACATGATTTTCCTAGGATT 58.095 36.000 13.57 0.14 0.00 3.01
2135 3599 8.736097 TTTTCCTAGGATTACATAGATGCCTA 57.264 34.615 13.57 0.00 32.94 3.93
2136 3600 8.736097 TTTCCTAGGATTACATAGATGCCTAA 57.264 34.615 13.57 0.00 32.94 2.69
2215 3679 7.284919 TCTTCAACCTAAATTTGGAGGAAAC 57.715 36.000 13.00 0.00 36.61 2.78
2246 3710 7.661536 AGATACTATTCTAACAAGGTGAGCA 57.338 36.000 0.00 0.00 0.00 4.26
2327 3793 0.804364 GCATCTGATTCACGTTGCCA 59.196 50.000 0.00 0.00 0.00 4.92
2616 4082 6.992063 ACCTGTAGAATCATTAGCAAGTTG 57.008 37.500 0.00 0.00 0.00 3.16
2660 4126 4.216472 TGGCACGCAACTTAACATCATAAA 59.784 37.500 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.867752 TGTAAAATTCCTTAAACTCAACGGAG 58.132 34.615 0.00 0.00 46.96 4.63
9 10 7.804843 TGTAAAATTCCTTAAACTCAACGGA 57.195 32.000 0.00 0.00 0.00 4.69
80 370 4.514066 ACGTAGGATTTCTTTTGCTCGTTT 59.486 37.500 0.00 0.00 0.00 3.60
82 372 3.432252 CACGTAGGATTTCTTTTGCTCGT 59.568 43.478 0.00 0.00 0.00 4.18
83 373 3.725010 GCACGTAGGATTTCTTTTGCTCG 60.725 47.826 0.00 0.00 0.00 5.03
84 374 3.188460 TGCACGTAGGATTTCTTTTGCTC 59.812 43.478 0.00 0.00 0.00 4.26
85 375 3.146066 TGCACGTAGGATTTCTTTTGCT 58.854 40.909 0.00 0.00 0.00 3.91
86 376 3.188460 TCTGCACGTAGGATTTCTTTTGC 59.812 43.478 0.00 0.00 0.00 3.68
87 377 5.122239 TCATCTGCACGTAGGATTTCTTTTG 59.878 40.000 0.00 0.00 0.00 2.44
88 378 5.245531 TCATCTGCACGTAGGATTTCTTTT 58.754 37.500 0.00 0.00 0.00 2.27
89 379 4.832248 TCATCTGCACGTAGGATTTCTTT 58.168 39.130 0.00 0.00 0.00 2.52
92 382 4.492570 CGTTTCATCTGCACGTAGGATTTC 60.493 45.833 0.00 0.00 0.00 2.17
93 383 3.370978 CGTTTCATCTGCACGTAGGATTT 59.629 43.478 0.00 0.00 0.00 2.17
95 385 2.165641 TCGTTTCATCTGCACGTAGGAT 59.834 45.455 0.00 0.00 35.40 3.24
96 386 1.542472 TCGTTTCATCTGCACGTAGGA 59.458 47.619 0.00 0.00 35.40 2.94
97 387 1.920574 CTCGTTTCATCTGCACGTAGG 59.079 52.381 0.00 0.00 35.40 3.18
98 388 1.321743 GCTCGTTTCATCTGCACGTAG 59.678 52.381 0.00 0.00 35.40 3.51
99 389 1.336424 TGCTCGTTTCATCTGCACGTA 60.336 47.619 0.00 0.00 35.40 3.57
100 390 0.599991 TGCTCGTTTCATCTGCACGT 60.600 50.000 0.00 0.00 35.40 4.49
101 391 0.512518 TTGCTCGTTTCATCTGCACG 59.487 50.000 0.00 0.00 33.13 5.34
102 392 2.686558 TTTGCTCGTTTCATCTGCAC 57.313 45.000 0.00 0.00 33.13 4.57
103 393 2.877786 TCTTTTGCTCGTTTCATCTGCA 59.122 40.909 0.00 0.00 0.00 4.41
104 394 3.542712 TCTTTTGCTCGTTTCATCTGC 57.457 42.857 0.00 0.00 0.00 4.26
105 395 5.049818 AGAGTTCTTTTGCTCGTTTCATCTG 60.050 40.000 0.00 0.00 36.88 2.90
106 396 5.049818 CAGAGTTCTTTTGCTCGTTTCATCT 60.050 40.000 0.00 0.00 36.88 2.90
107 397 5.142962 CAGAGTTCTTTTGCTCGTTTCATC 58.857 41.667 0.00 0.00 36.88 2.92
110 400 3.560068 TCCAGAGTTCTTTTGCTCGTTTC 59.440 43.478 0.00 0.00 36.88 2.78
115 405 3.879892 ACAGTTCCAGAGTTCTTTTGCTC 59.120 43.478 0.00 0.00 0.00 4.26
130 420 1.795768 TCATCTGCACGAACAGTTCC 58.204 50.000 7.76 0.00 38.84 3.62
152 442 4.222588 AGAGGTCAGAGGAGTGAATGAAAG 59.777 45.833 0.00 0.00 0.00 2.62
186 481 9.905713 AGTTTATTTTCATAGGAAGCACATAGA 57.094 29.630 0.00 0.00 33.82 1.98
189 484 9.023962 TGAAGTTTATTTTCATAGGAAGCACAT 57.976 29.630 0.00 0.00 33.82 3.21
190 485 8.402798 TGAAGTTTATTTTCATAGGAAGCACA 57.597 30.769 0.00 0.00 33.82 4.57
191 486 9.860898 ATTGAAGTTTATTTTCATAGGAAGCAC 57.139 29.630 0.00 0.00 34.76 4.40
192 487 9.859427 CATTGAAGTTTATTTTCATAGGAAGCA 57.141 29.630 0.00 0.00 34.76 3.91
193 488 8.811378 GCATTGAAGTTTATTTTCATAGGAAGC 58.189 33.333 0.00 0.00 34.76 3.86
238 647 5.634896 ACTCAAGAATAGAAAAAGCGCATG 58.365 37.500 11.47 0.00 0.00 4.06
284 1657 6.821388 TCTTAAGATATCTCCCAGTTGCTTC 58.179 40.000 5.51 0.00 0.00 3.86
286 1659 6.814954 TTCTTAAGATATCTCCCAGTTGCT 57.185 37.500 5.51 0.00 0.00 3.91
374 1747 0.908910 TCCCACGTGGCATCACTAAT 59.091 50.000 29.75 0.00 41.53 1.73
390 1763 7.731054 TCTCTCTCTTTCTAAGCAATTATCCC 58.269 38.462 0.00 0.00 0.00 3.85
397 1770 6.480763 TCTCTCTCTCTCTCTTTCTAAGCAA 58.519 40.000 0.00 0.00 0.00 3.91
398 1771 6.061022 TCTCTCTCTCTCTCTTTCTAAGCA 57.939 41.667 0.00 0.00 0.00 3.91
399 1772 6.349300 TCTCTCTCTCTCTCTCTTTCTAAGC 58.651 44.000 0.00 0.00 0.00 3.09
400 1773 7.786030 TCTCTCTCTCTCTCTCTCTTTCTAAG 58.214 42.308 0.00 0.00 0.00 2.18
401 1774 7.619698 TCTCTCTCTCTCTCTCTCTCTTTCTAA 59.380 40.741 0.00 0.00 0.00 2.10
402 1775 7.126061 TCTCTCTCTCTCTCTCTCTCTTTCTA 58.874 42.308 0.00 0.00 0.00 2.10
403 1776 5.960811 TCTCTCTCTCTCTCTCTCTCTTTCT 59.039 44.000 0.00 0.00 0.00 2.52
404 1777 6.097554 TCTCTCTCTCTCTCTCTCTCTCTTTC 59.902 46.154 0.00 0.00 0.00 2.62
405 1778 5.960811 TCTCTCTCTCTCTCTCTCTCTCTTT 59.039 44.000 0.00 0.00 0.00 2.52
406 1779 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
407 1780 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
408 1781 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
409 1782 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
410 1783 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
411 1784 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
412 1785 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
413 1786 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
414 1787 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
415 1788 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
416 1789 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
417 1790 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
418 1791 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
419 1792 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
420 1793 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
421 1794 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
422 1795 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
423 1796 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
424 1797 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
425 1798 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
426 1799 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
427 1800 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
428 1801 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
429 1802 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
430 1803 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
431 1804 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
432 1805 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
433 1806 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
434 1807 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
435 1808 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
436 1809 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
437 1810 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
438 1811 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
439 1812 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
440 1813 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
441 1814 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
442 1815 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
443 1816 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
444 1817 5.860941 TTCTCTCTCTCTCTCTCTCTCTC 57.139 47.826 0.00 0.00 0.00 3.20
445 1818 6.385176 TCATTTCTCTCTCTCTCTCTCTCTCT 59.615 42.308 0.00 0.00 0.00 3.10
446 1819 6.586344 TCATTTCTCTCTCTCTCTCTCTCTC 58.414 44.000 0.00 0.00 0.00 3.20
447 1820 6.566079 TCATTTCTCTCTCTCTCTCTCTCT 57.434 41.667 0.00 0.00 0.00 3.10
448 1821 7.121168 TGTTTCATTTCTCTCTCTCTCTCTCTC 59.879 40.741 0.00 0.00 0.00 3.20
449 1822 6.947733 TGTTTCATTTCTCTCTCTCTCTCTCT 59.052 38.462 0.00 0.00 0.00 3.10
450 1823 7.156876 TGTTTCATTTCTCTCTCTCTCTCTC 57.843 40.000 0.00 0.00 0.00 3.20
451 1824 7.537596 TTGTTTCATTTCTCTCTCTCTCTCT 57.462 36.000 0.00 0.00 0.00 3.10
452 1825 8.600449 TTTTGTTTCATTTCTCTCTCTCTCTC 57.400 34.615 0.00 0.00 0.00 3.20
453 1826 8.970859 TTTTTGTTTCATTTCTCTCTCTCTCT 57.029 30.769 0.00 0.00 0.00 3.10
454 1827 9.050601 TCTTTTTGTTTCATTTCTCTCTCTCTC 57.949 33.333 0.00 0.00 0.00 3.20
455 1828 8.970859 TCTTTTTGTTTCATTTCTCTCTCTCT 57.029 30.769 0.00 0.00 0.00 3.10
472 1845 9.271828 ACAAGTTTCATCTGTTTTTCTTTTTGT 57.728 25.926 0.00 0.00 0.00 2.83
475 1848 9.271828 ACAACAAGTTTCATCTGTTTTTCTTTT 57.728 25.926 0.00 0.00 0.00 2.27
476 1849 8.831715 ACAACAAGTTTCATCTGTTTTTCTTT 57.168 26.923 0.00 0.00 0.00 2.52
478 1851 9.736023 GATACAACAAGTTTCATCTGTTTTTCT 57.264 29.630 0.00 0.00 0.00 2.52
479 1852 9.736023 AGATACAACAAGTTTCATCTGTTTTTC 57.264 29.630 5.64 0.00 31.46 2.29
480 1853 9.736023 GAGATACAACAAGTTTCATCTGTTTTT 57.264 29.630 9.56 0.00 31.46 1.94
481 1854 8.902806 TGAGATACAACAAGTTTCATCTGTTTT 58.097 29.630 9.56 0.00 31.46 2.43
482 1855 8.345565 GTGAGATACAACAAGTTTCATCTGTTT 58.654 33.333 9.56 0.00 31.46 2.83
483 1856 7.498900 TGTGAGATACAACAAGTTTCATCTGTT 59.501 33.333 9.56 0.00 36.06 3.16
484 1857 6.992123 TGTGAGATACAACAAGTTTCATCTGT 59.008 34.615 9.56 0.00 36.06 3.41
485 1858 7.425577 TGTGAGATACAACAAGTTTCATCTG 57.574 36.000 9.56 0.00 36.06 2.90
486 1859 7.063898 CGATGTGAGATACAACAAGTTTCATCT 59.936 37.037 5.99 5.99 43.77 2.90
487 1860 7.176075 CGATGTGAGATACAACAAGTTTCATC 58.824 38.462 0.00 0.00 43.77 2.92
505 1878 8.007405 TCTTCTTTCACTATTATCCGATGTGA 57.993 34.615 0.00 0.00 36.10 3.58
511 1884 7.520614 GCCCAAATCTTCTTTCACTATTATCCG 60.521 40.741 0.00 0.00 0.00 4.18
526 1899 1.429423 CGAAGCCGCCCAAATCTTC 59.571 57.895 0.00 0.00 33.50 2.87
528 1901 2.438434 CCGAAGCCGCCCAAATCT 60.438 61.111 0.00 0.00 0.00 2.40
529 1902 1.873270 AAACCGAAGCCGCCCAAATC 61.873 55.000 0.00 0.00 0.00 2.17
530 1903 1.906333 AAACCGAAGCCGCCCAAAT 60.906 52.632 0.00 0.00 0.00 2.32
533 1906 3.179888 TACAAACCGAAGCCGCCCA 62.180 57.895 0.00 0.00 0.00 5.36
535 1908 1.232621 AACTACAAACCGAAGCCGCC 61.233 55.000 0.00 0.00 0.00 6.13
536 1909 0.589708 AAACTACAAACCGAAGCCGC 59.410 50.000 0.00 0.00 0.00 6.53
537 1910 3.343380 AAAAACTACAAACCGAAGCCG 57.657 42.857 0.00 0.00 0.00 5.52
538 1911 4.539870 GGTAAAAACTACAAACCGAAGCC 58.460 43.478 0.00 0.00 0.00 4.35
546 1919 5.435291 TCAAGTCGGGGTAAAAACTACAAA 58.565 37.500 0.00 0.00 0.00 2.83
547 1920 5.033589 TCAAGTCGGGGTAAAAACTACAA 57.966 39.130 0.00 0.00 0.00 2.41
551 1924 2.158726 TGCTCAAGTCGGGGTAAAAACT 60.159 45.455 0.00 0.00 0.00 2.66
563 1936 4.606071 AGCGGTGATGCTCAAGTC 57.394 55.556 0.00 0.00 42.95 3.01
575 1948 3.637273 GGGTGGACTTGGAGCGGT 61.637 66.667 0.00 0.00 0.00 5.68
593 1973 3.971245 AGATCAGAGTCCAAGTCCAAC 57.029 47.619 0.00 0.00 0.00 3.77
606 1986 4.520874 GGTCATGTTCGGATCTAGATCAGA 59.479 45.833 29.33 27.56 39.60 3.27
614 1994 2.099921 CTCTTCGGTCATGTTCGGATCT 59.900 50.000 9.67 0.00 0.00 2.75
615 1995 2.464865 CTCTTCGGTCATGTTCGGATC 58.535 52.381 9.67 0.00 0.00 3.36
637 2017 1.582624 TCCCATTCCCATCTCCTCTCT 59.417 52.381 0.00 0.00 0.00 3.10
639 2019 1.296523 ACTCCCATTCCCATCTCCTCT 59.703 52.381 0.00 0.00 0.00 3.69
655 2038 2.696187 CCCTAAGCCTAACTCTCACTCC 59.304 54.545 0.00 0.00 0.00 3.85
664 2047 1.816835 GCACCAAACCCTAAGCCTAAC 59.183 52.381 0.00 0.00 0.00 2.34
665 2048 1.612199 CGCACCAAACCCTAAGCCTAA 60.612 52.381 0.00 0.00 0.00 2.69
667 2050 1.303317 CGCACCAAACCCTAAGCCT 60.303 57.895 0.00 0.00 0.00 4.58
668 2051 2.340328 CCGCACCAAACCCTAAGCC 61.340 63.158 0.00 0.00 0.00 4.35
669 2052 0.679960 ATCCGCACCAAACCCTAAGC 60.680 55.000 0.00 0.00 0.00 3.09
670 2053 1.472480 CAATCCGCACCAAACCCTAAG 59.528 52.381 0.00 0.00 0.00 2.18
671 2054 1.540267 CAATCCGCACCAAACCCTAA 58.460 50.000 0.00 0.00 0.00 2.69
672 2055 0.322997 CCAATCCGCACCAAACCCTA 60.323 55.000 0.00 0.00 0.00 3.53
673 2056 1.606313 CCAATCCGCACCAAACCCT 60.606 57.895 0.00 0.00 0.00 4.34
674 2057 1.182385 TTCCAATCCGCACCAAACCC 61.182 55.000 0.00 0.00 0.00 4.11
675 2058 0.038618 GTTCCAATCCGCACCAAACC 60.039 55.000 0.00 0.00 0.00 3.27
676 2059 0.386731 CGTTCCAATCCGCACCAAAC 60.387 55.000 0.00 0.00 0.00 2.93
677 2060 1.519751 CCGTTCCAATCCGCACCAAA 61.520 55.000 0.00 0.00 0.00 3.28
678 2061 1.969064 CCGTTCCAATCCGCACCAA 60.969 57.895 0.00 0.00 0.00 3.67
679 2062 2.191786 ATCCGTTCCAATCCGCACCA 62.192 55.000 0.00 0.00 0.00 4.17
680 2063 1.451387 ATCCGTTCCAATCCGCACC 60.451 57.895 0.00 0.00 0.00 5.01
681 2064 1.714899 CCATCCGTTCCAATCCGCAC 61.715 60.000 0.00 0.00 0.00 5.34
682 2065 1.451207 CCATCCGTTCCAATCCGCA 60.451 57.895 0.00 0.00 0.00 5.69
683 2066 0.535102 ATCCATCCGTTCCAATCCGC 60.535 55.000 0.00 0.00 0.00 5.54
687 2070 2.126882 TCCTGATCCATCCGTTCCAAT 58.873 47.619 0.00 0.00 0.00 3.16
690 2073 0.830648 TGTCCTGATCCATCCGTTCC 59.169 55.000 0.00 0.00 0.00 3.62
692 2075 0.833287 CCTGTCCTGATCCATCCGTT 59.167 55.000 0.00 0.00 0.00 4.44
693 2076 1.690219 GCCTGTCCTGATCCATCCGT 61.690 60.000 0.00 0.00 0.00 4.69
701 2084 0.033796 CCATGTTGGCCTGTCCTGAT 60.034 55.000 3.32 0.00 35.26 2.90
722 2105 1.811965 TGGATTTTGCGGACATGTCTG 59.188 47.619 27.31 27.31 38.96 3.51
723 2106 2.198827 TGGATTTTGCGGACATGTCT 57.801 45.000 24.50 3.40 0.00 3.41
724 2107 3.508744 ATTGGATTTTGCGGACATGTC 57.491 42.857 17.91 17.91 0.00 3.06
730 2122 1.403514 GCGGAAATTGGATTTTGCGGA 60.404 47.619 11.68 0.00 46.41 5.54
731 2123 0.998669 GCGGAAATTGGATTTTGCGG 59.001 50.000 11.68 0.00 46.41 5.69
733 2125 1.368641 GGGCGGAAATTGGATTTTGC 58.631 50.000 0.00 0.00 34.91 3.68
736 2128 0.252467 TGGGGGCGGAAATTGGATTT 60.252 50.000 0.00 0.00 34.64 2.17
745 2137 2.283532 CCAAATGTGGGGGCGGAA 60.284 61.111 0.00 0.00 41.77 4.30
753 2145 4.399303 GTCTCAACCTTATCCCAAATGTGG 59.601 45.833 0.00 0.00 45.53 4.17
754 2146 4.094887 CGTCTCAACCTTATCCCAAATGTG 59.905 45.833 0.00 0.00 0.00 3.21
766 2158 1.611977 TGTCGTGATCGTCTCAACCTT 59.388 47.619 0.00 0.00 35.07 3.50
769 2161 3.241364 CGAATTGTCGTGATCGTCTCAAC 60.241 47.826 0.00 0.00 42.53 3.18
775 2167 2.579207 ATCCGAATTGTCGTGATCGT 57.421 45.000 0.00 0.00 46.21 3.73
776 2168 5.174943 TCATTTATCCGAATTGTCGTGATCG 59.825 40.000 4.22 0.00 46.21 3.69
784 2176 4.526970 AGCCACTCATTTATCCGAATTGT 58.473 39.130 0.00 0.00 0.00 2.71
787 2179 5.418840 ACAAAAGCCACTCATTTATCCGAAT 59.581 36.000 0.00 0.00 0.00 3.34
791 2183 5.415701 TCTCACAAAAGCCACTCATTTATCC 59.584 40.000 0.00 0.00 0.00 2.59
800 2192 4.499696 CCGAAAAATCTCACAAAAGCCACT 60.500 41.667 0.00 0.00 0.00 4.00
809 2201 3.399330 GGACTGTCCGAAAAATCTCACA 58.601 45.455 11.71 0.00 0.00 3.58
822 2214 4.215399 TGAATTGAATTGAACGGACTGTCC 59.785 41.667 16.99 16.99 0.00 4.02
823 2215 5.356882 TGAATTGAATTGAACGGACTGTC 57.643 39.130 0.00 0.00 0.00 3.51
824 2216 5.707298 AGATGAATTGAATTGAACGGACTGT 59.293 36.000 0.00 0.00 0.00 3.55
825 2217 6.025896 CAGATGAATTGAATTGAACGGACTG 58.974 40.000 0.00 0.00 0.00 3.51
827 2219 6.182039 TCAGATGAATTGAATTGAACGGAC 57.818 37.500 0.00 0.00 0.00 4.79
828 2220 6.206438 TGTTCAGATGAATTGAATTGAACGGA 59.794 34.615 15.05 0.73 44.35 4.69
829 2221 6.380995 TGTTCAGATGAATTGAATTGAACGG 58.619 36.000 15.05 0.00 44.35 4.44
830 2222 7.300320 TCTGTTCAGATGAATTGAATTGAACG 58.700 34.615 15.05 11.63 44.35 3.95
845 2237 7.357429 TCATAGTCACATCATCTGTTCAGAT 57.643 36.000 9.22 9.22 35.29 2.90
846 2238 6.183360 CCTCATAGTCACATCATCTGTTCAGA 60.183 42.308 4.96 4.96 35.29 3.27
850 2242 5.070180 CCTCCTCATAGTCACATCATCTGTT 59.930 44.000 0.00 0.00 35.29 3.16
854 2246 5.999205 ATCCTCCTCATAGTCACATCATC 57.001 43.478 0.00 0.00 0.00 2.92
856 2248 4.346127 CCAATCCTCCTCATAGTCACATCA 59.654 45.833 0.00 0.00 0.00 3.07
859 2251 3.963374 CTCCAATCCTCCTCATAGTCACA 59.037 47.826 0.00 0.00 0.00 3.58
863 2255 3.582208 GCATCTCCAATCCTCCTCATAGT 59.418 47.826 0.00 0.00 0.00 2.12
889 2284 5.733676 AGTTGAAGTTGAAAAAGCACCATT 58.266 33.333 0.00 0.00 0.00 3.16
897 2292 5.172205 CGGGGAAAAGTTGAAGTTGAAAAA 58.828 37.500 0.00 0.00 0.00 1.94
899 2294 3.429684 GCGGGGAAAAGTTGAAGTTGAAA 60.430 43.478 0.00 0.00 0.00 2.69
900 2295 2.100087 GCGGGGAAAAGTTGAAGTTGAA 59.900 45.455 0.00 0.00 0.00 2.69
901 2296 1.679153 GCGGGGAAAAGTTGAAGTTGA 59.321 47.619 0.00 0.00 0.00 3.18
902 2297 1.407258 TGCGGGGAAAAGTTGAAGTTG 59.593 47.619 0.00 0.00 0.00 3.16
903 2298 1.770294 TGCGGGGAAAAGTTGAAGTT 58.230 45.000 0.00 0.00 0.00 2.66
904 2299 1.770294 TTGCGGGGAAAAGTTGAAGT 58.230 45.000 0.00 0.00 0.00 3.01
905 2300 2.159170 TGTTTGCGGGGAAAAGTTGAAG 60.159 45.455 0.00 0.00 0.00 3.02
906 2301 1.825474 TGTTTGCGGGGAAAAGTTGAA 59.175 42.857 0.00 0.00 0.00 2.69
907 2302 1.475403 TGTTTGCGGGGAAAAGTTGA 58.525 45.000 0.00 0.00 0.00 3.18
908 2303 2.301577 TTGTTTGCGGGGAAAAGTTG 57.698 45.000 0.00 0.00 0.00 3.16
909 2304 3.266636 CTTTTGTTTGCGGGGAAAAGTT 58.733 40.909 0.00 0.00 32.91 2.66
910 2305 2.419436 CCTTTTGTTTGCGGGGAAAAGT 60.419 45.455 0.00 0.00 34.83 2.66
911 2306 2.159028 TCCTTTTGTTTGCGGGGAAAAG 60.159 45.455 0.00 0.00 35.89 2.27
912 2307 1.831736 TCCTTTTGTTTGCGGGGAAAA 59.168 42.857 0.00 0.00 0.00 2.29
913 2308 1.486211 TCCTTTTGTTTGCGGGGAAA 58.514 45.000 0.00 0.00 0.00 3.13
914 2309 1.137282 GTTCCTTTTGTTTGCGGGGAA 59.863 47.619 0.00 0.00 0.00 3.97
915 2310 0.747852 GTTCCTTTTGTTTGCGGGGA 59.252 50.000 0.00 0.00 0.00 4.81
916 2311 0.750249 AGTTCCTTTTGTTTGCGGGG 59.250 50.000 0.00 0.00 0.00 5.73
917 2312 1.136110 ACAGTTCCTTTTGTTTGCGGG 59.864 47.619 0.00 0.00 0.00 6.13
918 2313 2.577449 ACAGTTCCTTTTGTTTGCGG 57.423 45.000 0.00 0.00 0.00 5.69
919 2314 4.919677 AAAACAGTTCCTTTTGTTTGCG 57.080 36.364 3.66 0.00 44.32 4.85
968 2364 2.559668 AGCATCAACCAACATTCCAGTG 59.440 45.455 0.00 0.00 0.00 3.66
993 2389 4.459337 TGAAACGCTACTCTCATTCTCTGA 59.541 41.667 0.00 0.00 0.00 3.27
994 2390 4.738124 TGAAACGCTACTCTCATTCTCTG 58.262 43.478 0.00 0.00 0.00 3.35
995 2391 4.702612 TCTGAAACGCTACTCTCATTCTCT 59.297 41.667 0.00 0.00 0.00 3.10
996 2392 4.987832 TCTGAAACGCTACTCTCATTCTC 58.012 43.478 0.00 0.00 0.00 2.87
998 2394 6.654793 AAATCTGAAACGCTACTCTCATTC 57.345 37.500 0.00 0.00 0.00 2.67
1000 2396 5.934625 ACAAAATCTGAAACGCTACTCTCAT 59.065 36.000 0.00 0.00 0.00 2.90
1001 2397 5.297547 ACAAAATCTGAAACGCTACTCTCA 58.702 37.500 0.00 0.00 0.00 3.27
1002 2398 5.443431 CGACAAAATCTGAAACGCTACTCTC 60.443 44.000 0.00 0.00 0.00 3.20
1003 2399 4.386049 CGACAAAATCTGAAACGCTACTCT 59.614 41.667 0.00 0.00 0.00 3.24
1005 2401 3.120649 GCGACAAAATCTGAAACGCTACT 60.121 43.478 0.00 0.00 39.92 2.57
1010 2411 3.519908 TGAGCGACAAAATCTGAAACG 57.480 42.857 0.00 0.00 0.00 3.60
1011 2412 5.504755 CGTATTGAGCGACAAAATCTGAAAC 59.495 40.000 3.79 0.00 42.03 2.78
1015 2416 3.181521 TGCGTATTGAGCGACAAAATCTG 60.182 43.478 3.79 0.00 42.03 2.90
1059 2462 2.614481 GGTCAGCTCGGGTTTTATCACA 60.614 50.000 0.00 0.00 0.00 3.58
1065 2468 1.053424 TACAGGTCAGCTCGGGTTTT 58.947 50.000 0.00 0.00 0.00 2.43
1087 2490 1.374758 CTCTGTCTGTTGGTCCCGC 60.375 63.158 0.00 0.00 0.00 6.13
1100 2503 4.385405 GAGGCACGGCAGCTCTGT 62.385 66.667 0.00 0.00 33.70 3.41
1109 2512 2.357517 AAGTTCTGCGAGGCACGG 60.358 61.111 6.44 0.00 42.83 4.94
1114 2517 1.743252 GGCTGGAAGTTCTGCGAGG 60.743 63.158 2.25 0.00 35.30 4.63
1115 2518 0.603707 TTGGCTGGAAGTTCTGCGAG 60.604 55.000 2.25 0.00 35.30 5.03
1116 2519 0.884704 GTTGGCTGGAAGTTCTGCGA 60.885 55.000 2.25 2.76 35.30 5.10
1117 2520 1.576421 GTTGGCTGGAAGTTCTGCG 59.424 57.895 2.25 0.00 35.30 5.18
1126 2529 4.278513 CGGGTTGGGTTGGCTGGA 62.279 66.667 0.00 0.00 0.00 3.86
1174 2577 2.196997 CTCGGCTGGTTGGATTGGGA 62.197 60.000 0.00 0.00 0.00 4.37
1185 2588 3.815569 GAGATCGCGACTCGGCTGG 62.816 68.421 12.93 0.00 39.05 4.85
1186 2589 2.352915 GAGATCGCGACTCGGCTG 60.353 66.667 12.93 0.00 39.05 4.85
1187 2590 3.587933 GGAGATCGCGACTCGGCT 61.588 66.667 12.93 3.71 39.05 5.52
1188 2591 4.632458 GGGAGATCGCGACTCGGC 62.632 72.222 12.93 8.45 39.05 5.54
1453 2877 4.862823 GAGAGGGAGGGGGACGGG 62.863 77.778 0.00 0.00 0.00 5.28
1456 2880 1.916206 GCAAAGAGAGGGAGGGGGAC 61.916 65.000 0.00 0.00 0.00 4.46
1468 2904 1.017387 GGTGATTAGCCGGCAAAGAG 58.983 55.000 31.54 0.00 0.00 2.85
1492 2928 2.777692 GGGAGGAGAGAGAGAGAGAGAA 59.222 54.545 0.00 0.00 0.00 2.87
1507 2943 3.702048 CGCCAGAAACGGGGAGGA 61.702 66.667 0.00 0.00 41.43 3.71
1510 2946 4.697756 CTGCGCCAGAAACGGGGA 62.698 66.667 4.18 0.00 41.43 4.81
1511 2947 3.976701 ATCTGCGCCAGAAACGGGG 62.977 63.158 4.18 0.00 44.04 5.73
1522 2959 0.179062 ATCCAGAACTCCATCTGCGC 60.179 55.000 0.00 0.00 44.43 6.09
1523 2960 1.137675 TGATCCAGAACTCCATCTGCG 59.862 52.381 0.00 0.00 44.43 5.18
1637 3074 3.358667 TAGTCGTCGTCGCTGTCGC 62.359 63.158 0.00 0.00 36.96 5.19
1638 3075 1.577117 GTAGTCGTCGTCGCTGTCG 60.577 63.158 0.00 0.00 36.96 4.35
1639 3076 0.096628 ATGTAGTCGTCGTCGCTGTC 59.903 55.000 0.00 0.00 36.96 3.51
1640 3077 0.096628 GATGTAGTCGTCGTCGCTGT 59.903 55.000 0.00 0.00 36.96 4.40
1641 3078 0.374063 AGATGTAGTCGTCGTCGCTG 59.626 55.000 0.00 0.00 36.96 5.18
1642 3079 1.592081 GTAGATGTAGTCGTCGTCGCT 59.408 52.381 0.00 0.97 36.96 4.93
1685 3122 4.888325 ATGGGAGGGGAGGAGCGG 62.888 72.222 0.00 0.00 0.00 5.52
1686 3123 3.237741 GATGGGAGGGGAGGAGCG 61.238 72.222 0.00 0.00 0.00 5.03
1687 3124 2.851588 GGATGGGAGGGGAGGAGC 60.852 72.222 0.00 0.00 0.00 4.70
1703 3140 3.112263 TCCACTAACCTAATCCCACAGG 58.888 50.000 0.00 0.00 37.97 4.00
1734 3184 2.409984 TACAGGGGGCAGGAACAGGA 62.410 60.000 0.00 0.00 0.00 3.86
1762 3213 4.879598 GGTATATAACCTGTCACCCGAAG 58.120 47.826 0.00 0.00 45.75 3.79
1775 3226 9.965902 ATCTGGATCCAATTTCAGGTATATAAC 57.034 33.333 17.00 0.00 0.00 1.89
1778 3229 9.305555 CAAATCTGGATCCAATTTCAGGTATAT 57.694 33.333 17.00 0.00 0.00 0.86
1779 3230 7.231317 GCAAATCTGGATCCAATTTCAGGTATA 59.769 37.037 17.00 0.00 0.00 1.47
1780 3231 6.041296 GCAAATCTGGATCCAATTTCAGGTAT 59.959 38.462 17.00 0.01 0.00 2.73
1857 3321 7.056635 ACCCAGATGAAATACTCATAAACCAG 58.943 38.462 0.00 0.00 45.23 4.00
1921 3385 6.266103 TGAAATGGATCTAGGATGGAATTTGC 59.734 38.462 0.00 0.00 0.00 3.68
1969 3433 5.184864 CCTGATCCTCTAGCTTATGAATCGT 59.815 44.000 0.00 0.00 0.00 3.73
2038 3502 6.493802 AGTTGTACCTCTCACTTTGATCACTA 59.506 38.462 0.00 0.00 0.00 2.74
2040 3504 5.542779 AGTTGTACCTCTCACTTTGATCAC 58.457 41.667 0.00 0.00 0.00 3.06
2056 3520 5.544650 TGAAACACTAGGGCTTAGTTGTAC 58.455 41.667 6.55 7.63 40.68 2.90
2084 3548 3.634910 TGTGCTACTCTGTGTTGTACTGA 59.365 43.478 11.82 0.00 37.72 3.41
2085 3549 3.977427 TGTGCTACTCTGTGTTGTACTG 58.023 45.455 11.82 0.00 37.72 2.74
2101 3565 6.662755 TGTAATCCTAGGAAAATCATGTGCT 58.337 36.000 17.30 0.00 0.00 4.40
2135 3599 5.879223 AGATCAAGATTCTCACGATTTGCTT 59.121 36.000 0.00 0.00 0.00 3.91
2136 3600 5.293814 CAGATCAAGATTCTCACGATTTGCT 59.706 40.000 0.00 0.00 0.00 3.91
2246 3710 7.678837 TGTTCAAATCATTAGAAATGCCCTTT 58.321 30.769 0.00 0.00 0.00 3.11
2327 3793 8.339714 CAAAATGCTTCACAGAAATGAACAAAT 58.660 29.630 0.00 0.00 34.84 2.32
2616 4082 4.318831 CCACGTAGTTGCTCAAAGAAGTTC 60.319 45.833 0.00 0.00 41.61 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.