Multiple sequence alignment - TraesCS7B01G052400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G052400 chr7B 100.000 4319 0 0 1 4319 54907591 54903273 0.000000e+00 7976.0
1 TraesCS7B01G052400 chr7B 94.203 414 17 6 3910 4319 747902028 747902438 3.670000e-175 625.0
2 TraesCS7B01G052400 chr7B 92.169 166 13 0 141 306 34678211 34678046 7.220000e-58 235.0
3 TraesCS7B01G052400 chr7B 86.026 229 20 7 499 726 54938020 54937803 7.220000e-58 235.0
4 TraesCS7B01G052400 chr7B 92.683 164 11 1 142 304 604115798 604115961 7.220000e-58 235.0
5 TraesCS7B01G052400 chr7D 94.634 2609 93 13 984 3570 99794689 99792106 0.000000e+00 3999.0
6 TraesCS7B01G052400 chr7D 88.318 428 27 13 303 720 99795245 99794831 3.880000e-135 492.0
7 TraesCS7B01G052400 chr7D 90.764 314 15 5 3607 3911 99792104 99791796 1.450000e-109 407.0
8 TraesCS7B01G052400 chr7D 87.234 235 20 3 499 726 99797007 99796776 4.280000e-65 259.0
9 TraesCS7B01G052400 chr7D 93.662 142 9 0 1 142 99795385 99795244 3.380000e-51 213.0
10 TraesCS7B01G052400 chr3B 89.784 1664 118 19 1740 3372 26503521 26505163 0.000000e+00 2084.0
11 TraesCS7B01G052400 chr3B 85.499 1393 128 27 303 1664 26502171 26503520 0.000000e+00 1386.0
12 TraesCS7B01G052400 chr3B 88.757 169 13 4 557 724 26501322 26501485 7.320000e-48 202.0
13 TraesCS7B01G052400 chr3B 88.095 168 16 4 557 724 26489011 26489174 3.410000e-46 196.0
14 TraesCS7B01G052400 chr3B 93.846 65 2 1 416 478 26482541 26482605 3.560000e-16 97.1
15 TraesCS7B01G052400 chr7A 85.239 691 39 17 2876 3524 102096522 102097191 0.000000e+00 652.0
16 TraesCS7B01G052400 chr7A 84.704 693 50 27 279 964 102095623 102096266 3.640000e-180 641.0
17 TraesCS7B01G052400 chr7A 93.117 247 17 0 2681 2927 102096273 102096519 3.170000e-96 363.0
18 TraesCS7B01G052400 chr7A 86.310 168 21 1 1 166 102095443 102095610 9.540000e-42 182.0
19 TraesCS7B01G052400 chr3A 84.836 244 31 6 2972 3212 11811247 11811007 1.550000e-59 241.0
20 TraesCS7B01G052400 chr5B 92.727 165 12 0 141 305 412615080 412614916 5.580000e-59 239.0
21 TraesCS7B01G052400 chr5B 84.874 238 30 6 2972 3206 670522218 670522452 7.220000e-58 235.0
22 TraesCS7B01G052400 chr5B 89.888 178 16 2 141 317 517578053 517577877 1.210000e-55 228.0
23 TraesCS7B01G052400 chr5B 86.885 61 8 0 1011 1071 543282501 543282441 7.750000e-08 69.4
24 TraesCS7B01G052400 chr4B 91.813 171 14 0 135 305 564660785 564660955 5.580000e-59 239.0
25 TraesCS7B01G052400 chr4B 91.617 167 14 0 141 307 78329228 78329062 9.340000e-57 231.0
26 TraesCS7B01G052400 chrUn 84.426 244 32 6 2972 3212 35128256 35128016 7.220000e-58 235.0
27 TraesCS7B01G052400 chr1A 91.279 172 15 0 135 306 501037666 501037837 7.220000e-58 235.0
28 TraesCS7B01G052400 chr1A 88.710 186 20 1 3032 3217 574639956 574640140 4.350000e-55 226.0
29 TraesCS7B01G052400 chr1B 91.279 172 14 1 141 311 34233590 34233761 2.600000e-57 233.0
30 TraesCS7B01G052400 chr1B 88.172 186 21 1 3032 3217 666256492 666256676 2.020000e-53 220.0
31 TraesCS7B01G052400 chr6B 90.805 174 14 2 131 304 567476492 567476663 9.340000e-57 231.0
32 TraesCS7B01G052400 chr1D 88.710 186 20 1 3032 3217 478357459 478357643 4.350000e-55 226.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G052400 chr7B 54903273 54907591 4318 True 7976.0 7976 100.000000 1 4319 1 chr7B.!!$R2 4318
1 TraesCS7B01G052400 chr7D 99791796 99797007 5211 True 1074.0 3999 90.922400 1 3911 5 chr7D.!!$R1 3910
2 TraesCS7B01G052400 chr3B 26501322 26505163 3841 False 1224.0 2084 88.013333 303 3372 3 chr3B.!!$F3 3069
3 TraesCS7B01G052400 chr7A 102095443 102097191 1748 False 459.5 652 87.342500 1 3524 4 chr7A.!!$F1 3523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 2628 0.167908 CCACACACACACACACACAC 59.832 55.0 0.0 0.0 0.00 3.82 F
1311 3016 0.177604 CTCCTGTCCTGCTCATCCAC 59.822 60.0 0.0 0.0 0.00 4.02 F
3010 4781 0.037882 CAGTCTCGCAAAGGAGCTGA 60.038 55.0 0.0 0.0 38.93 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2370 4084 0.465097 CCTGTGCATCCACCAGATCC 60.465 60.0 2.98 0.0 41.35 3.36 R
3274 5066 0.536460 AAACCAGGTAGTTGTGGGCG 60.536 55.0 0.00 0.0 38.25 6.13 R
3911 5731 0.032678 ACGCGCCATCAAGGATCTAG 59.967 55.0 5.73 0.0 41.22 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 1754 1.379916 CTTGCCCCTGACATGTGGA 59.620 57.895 1.15 0.00 0.00 4.02
149 1774 5.046231 GTGGATTCCATCTATTACTCCCTCC 60.046 48.000 9.01 0.00 35.28 4.30
150 1775 5.094387 GGATTCCATCTATTACTCCCTCCA 58.906 45.833 0.00 0.00 0.00 3.86
152 1777 6.216456 GGATTCCATCTATTACTCCCTCCATT 59.784 42.308 0.00 0.00 0.00 3.16
155 1780 6.393897 TCCATCTATTACTCCCTCCATTTCT 58.606 40.000 0.00 0.00 0.00 2.52
166 1791 8.753497 ACTCCCTCCATTTCTAAATATTTGTC 57.247 34.615 11.05 0.00 0.00 3.18
167 1792 8.560903 ACTCCCTCCATTTCTAAATATTTGTCT 58.439 33.333 11.05 0.00 0.00 3.41
168 1793 9.413734 CTCCCTCCATTTCTAAATATTTGTCTT 57.586 33.333 11.05 0.00 0.00 3.01
202 1827 8.662781 TTTCAATAAGTGACTACATATGGAGC 57.337 34.615 15.30 8.47 35.39 4.70
203 1828 7.360113 TCAATAAGTGACTACATATGGAGCA 57.640 36.000 15.30 10.95 0.00 4.26
204 1829 7.436933 TCAATAAGTGACTACATATGGAGCAG 58.563 38.462 15.30 4.79 0.00 4.24
205 1830 7.287696 TCAATAAGTGACTACATATGGAGCAGA 59.712 37.037 15.30 4.28 0.00 4.26
206 1831 5.939764 AAGTGACTACATATGGAGCAGAA 57.060 39.130 15.30 0.00 0.00 3.02
207 1832 6.491714 AAGTGACTACATATGGAGCAGAAT 57.508 37.500 15.30 0.00 0.00 2.40
208 1833 5.851720 AGTGACTACATATGGAGCAGAATG 58.148 41.667 15.30 0.00 40.87 2.67
209 1834 5.600069 AGTGACTACATATGGAGCAGAATGA 59.400 40.000 15.30 0.00 39.69 2.57
210 1835 5.925397 GTGACTACATATGGAGCAGAATGAG 59.075 44.000 15.30 0.00 39.69 2.90
211 1836 5.600069 TGACTACATATGGAGCAGAATGAGT 59.400 40.000 15.30 0.00 39.69 3.41
212 1837 5.851720 ACTACATATGGAGCAGAATGAGTG 58.148 41.667 15.30 0.00 39.69 3.51
213 1838 5.600069 ACTACATATGGAGCAGAATGAGTGA 59.400 40.000 15.30 0.00 39.69 3.41
214 1839 5.363562 ACATATGGAGCAGAATGAGTGAA 57.636 39.130 7.80 0.00 39.69 3.18
215 1840 5.938279 ACATATGGAGCAGAATGAGTGAAT 58.062 37.500 7.80 0.00 39.69 2.57
216 1841 5.996513 ACATATGGAGCAGAATGAGTGAATC 59.003 40.000 7.80 0.00 39.69 2.52
217 1842 4.774660 ATGGAGCAGAATGAGTGAATCT 57.225 40.909 0.00 0.00 39.69 2.40
218 1843 5.883685 ATGGAGCAGAATGAGTGAATCTA 57.116 39.130 0.00 0.00 39.69 1.98
219 1844 5.016051 TGGAGCAGAATGAGTGAATCTAC 57.984 43.478 0.00 0.00 39.69 2.59
220 1845 4.467438 TGGAGCAGAATGAGTGAATCTACA 59.533 41.667 0.00 0.00 39.69 2.74
221 1846 4.808364 GGAGCAGAATGAGTGAATCTACAC 59.192 45.833 0.00 0.00 39.69 2.90
299 1924 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
319 1944 9.627395 CAGAGGGAGTAGATTTTATGTATAACG 57.373 37.037 0.00 0.00 0.00 3.18
334 1959 0.678395 TAACGGGTCAGGTAAACGCA 59.322 50.000 0.00 0.00 0.00 5.24
349 1978 4.483476 AAACGCATGTTTAGACTTGGAC 57.517 40.909 0.00 0.00 46.22 4.02
350 1979 3.120321 ACGCATGTTTAGACTTGGACA 57.880 42.857 0.00 0.00 32.98 4.02
351 1980 3.674997 ACGCATGTTTAGACTTGGACAT 58.325 40.909 0.00 0.00 32.98 3.06
352 1981 4.827692 ACGCATGTTTAGACTTGGACATA 58.172 39.130 0.00 0.00 31.92 2.29
409 2039 3.825908 AAGCATTTTAGGACCCTGGAA 57.174 42.857 0.00 0.00 0.00 3.53
434 2066 3.521947 AGACGACACCTTTACATAGCC 57.478 47.619 0.00 0.00 0.00 3.93
478 2110 2.864343 ACTCGCCATGTTTTATCTACGC 59.136 45.455 0.00 0.00 0.00 4.42
504 2138 2.163815 GCCGACAGCTAACTTCTGACTA 59.836 50.000 0.00 0.00 38.99 2.59
523 2157 6.297582 TGACTAAGACCACTAGAGGCTATAC 58.702 44.000 6.07 0.00 0.00 1.47
559 2197 0.601558 TGCCCTAACACGTGAGACTC 59.398 55.000 25.01 7.01 0.00 3.36
573 2211 5.218885 CGTGAGACTCTGGAATATCATCAC 58.781 45.833 3.68 0.00 33.05 3.06
607 2249 5.286221 AGGTTAGAGGCTTGGGATAGTAAA 58.714 41.667 0.00 0.00 0.00 2.01
648 2292 4.448210 AGCCTGTCGACTTTGTCTTTTTA 58.552 39.130 17.92 0.00 0.00 1.52
653 2297 7.248437 CCTGTCGACTTTGTCTTTTTAGTTTT 58.752 34.615 17.92 0.00 0.00 2.43
798 2442 4.828072 AGTAAAGCTGAAGGGTTCCTAG 57.172 45.455 0.00 0.00 34.22 3.02
804 2450 2.911484 CTGAAGGGTTCCTAGATGTGC 58.089 52.381 0.00 0.00 31.13 4.57
805 2451 2.237143 CTGAAGGGTTCCTAGATGTGCA 59.763 50.000 0.00 0.00 31.13 4.57
806 2452 2.846206 TGAAGGGTTCCTAGATGTGCAT 59.154 45.455 0.00 0.00 31.13 3.96
807 2453 3.118261 TGAAGGGTTCCTAGATGTGCATC 60.118 47.826 4.12 4.12 33.32 3.91
808 2454 1.414181 AGGGTTCCTAGATGTGCATCG 59.586 52.381 6.54 0.00 42.48 3.84
809 2455 1.412710 GGGTTCCTAGATGTGCATCGA 59.587 52.381 6.54 0.00 42.48 3.59
944 2610 0.878416 AACACACACACACACACACC 59.122 50.000 0.00 0.00 0.00 4.16
962 2628 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
963 2629 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
964 2630 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
965 2631 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
966 2632 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
967 2633 1.275010 ACACACACACACACACAGAGA 59.725 47.619 0.00 0.00 0.00 3.10
968 2634 1.929169 CACACACACACACACAGAGAG 59.071 52.381 0.00 0.00 0.00 3.20
969 2635 1.824852 ACACACACACACACAGAGAGA 59.175 47.619 0.00 0.00 0.00 3.10
970 2636 2.159184 ACACACACACACACAGAGAGAG 60.159 50.000 0.00 0.00 0.00 3.20
971 2637 2.099756 CACACACACACACAGAGAGAGA 59.900 50.000 0.00 0.00 0.00 3.10
972 2638 2.360483 ACACACACACACAGAGAGAGAG 59.640 50.000 0.00 0.00 0.00 3.20
973 2639 2.620585 CACACACACACAGAGAGAGAGA 59.379 50.000 0.00 0.00 0.00 3.10
974 2640 2.884012 ACACACACACAGAGAGAGAGAG 59.116 50.000 0.00 0.00 0.00 3.20
975 2641 3.145286 CACACACACAGAGAGAGAGAGA 58.855 50.000 0.00 0.00 0.00 3.10
976 2642 3.189080 CACACACACAGAGAGAGAGAGAG 59.811 52.174 0.00 0.00 0.00 3.20
977 2643 3.072330 ACACACACAGAGAGAGAGAGAGA 59.928 47.826 0.00 0.00 0.00 3.10
978 2644 3.686241 CACACACAGAGAGAGAGAGAGAG 59.314 52.174 0.00 0.00 0.00 3.20
979 2645 3.582647 ACACACAGAGAGAGAGAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
980 2646 4.186926 CACACAGAGAGAGAGAGAGAGAG 58.813 52.174 0.00 0.00 0.00 3.20
981 2647 4.081476 CACACAGAGAGAGAGAGAGAGAGA 60.081 50.000 0.00 0.00 0.00 3.10
982 2648 4.161189 ACACAGAGAGAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
983 2649 4.403752 CACAGAGAGAGAGAGAGAGAGAGA 59.596 50.000 0.00 0.00 0.00 3.10
1020 2716 0.602638 TGTTCGATGTGTGGAGTGCC 60.603 55.000 0.00 0.00 0.00 5.01
1071 2767 4.504916 CTCGTCCTCGGCAGCCTG 62.505 72.222 10.54 3.19 37.69 4.85
1311 3016 0.177604 CTCCTGTCCTGCTCATCCAC 59.822 60.000 0.00 0.00 0.00 4.02
1480 3185 1.260538 ATCAGCGGTCCTGCTCTTCA 61.261 55.000 5.39 0.00 45.23 3.02
1551 3256 2.472861 CAGCATTAATAGACTGGCGTCG 59.527 50.000 4.98 0.00 44.93 5.12
1733 3438 3.435186 GGCGACCAAGAAGCAGCC 61.435 66.667 0.00 0.00 37.61 4.85
1735 3440 3.121030 CGACCAAGAAGCAGCCGG 61.121 66.667 0.00 0.00 0.00 6.13
1782 3490 4.309950 GTGGGCTTGTCGGACGGT 62.310 66.667 3.34 0.00 0.00 4.83
1842 3550 1.642037 CTGCTGCCGATGACCTTGTG 61.642 60.000 0.00 0.00 0.00 3.33
1866 3574 1.005340 GAGGCAGAGCTCGAAATGTG 58.995 55.000 8.37 0.61 0.00 3.21
1869 3577 1.354337 GCAGAGCTCGAAATGTGCGA 61.354 55.000 8.37 0.00 41.88 5.10
1914 3628 1.056660 AGGCGGAGAAGGAACTCAAA 58.943 50.000 0.00 0.00 38.49 2.69
2157 3871 2.104331 CAGCTACTGTACCGGGCG 59.896 66.667 6.32 0.00 0.00 6.13
2294 4008 1.065199 CATGGGCTGCAAGGAAGAGTA 60.065 52.381 0.50 0.00 0.00 2.59
2370 4084 1.519455 GTCGGAGATGGTCCTTGCG 60.519 63.158 0.00 0.00 44.35 4.85
2490 4204 1.667236 CAGGTGCCGAGATAATGCAA 58.333 50.000 0.00 0.00 36.65 4.08
2496 4210 1.869767 GCCGAGATAATGCAACAGAGG 59.130 52.381 0.00 0.00 0.00 3.69
2497 4211 1.869767 CCGAGATAATGCAACAGAGGC 59.130 52.381 0.00 0.00 0.00 4.70
2498 4212 2.554142 CGAGATAATGCAACAGAGGCA 58.446 47.619 0.00 0.00 46.66 4.75
2499 4213 2.543012 CGAGATAATGCAACAGAGGCAG 59.457 50.000 0.00 0.00 45.68 4.85
2500 4214 3.739209 CGAGATAATGCAACAGAGGCAGA 60.739 47.826 0.00 0.00 45.68 4.26
2501 4215 3.806380 AGATAATGCAACAGAGGCAGAG 58.194 45.455 0.00 0.00 45.68 3.35
2502 4216 1.742761 TAATGCAACAGAGGCAGAGC 58.257 50.000 0.00 0.00 45.68 4.09
2503 4217 0.251033 AATGCAACAGAGGCAGAGCA 60.251 50.000 0.00 0.00 45.68 4.26
2504 4218 0.677098 ATGCAACAGAGGCAGAGCAG 60.677 55.000 0.00 0.00 45.68 4.24
2505 4219 2.688794 GCAACAGAGGCAGAGCAGC 61.689 63.158 0.00 0.00 0.00 5.25
2636 4350 3.449227 CGCCACCGACCTCTGCTA 61.449 66.667 0.00 0.00 36.29 3.49
2658 4372 1.501582 GCATGGAAGGTACTCCTCCT 58.498 55.000 3.08 0.00 44.35 3.69
2662 4376 1.677637 GGAAGGTACTCCTCCTGCCG 61.678 65.000 0.00 0.00 44.35 5.69
2665 4379 2.772691 GGTACTCCTCCTGCCGACG 61.773 68.421 0.00 0.00 0.00 5.12
2666 4380 2.439701 TACTCCTCCTGCCGACGG 60.440 66.667 10.29 10.29 0.00 4.79
2677 4391 3.441290 CCGACGGCGAGGAAGACT 61.441 66.667 15.16 0.00 40.82 3.24
2845 4559 1.143183 ATGGTAGGTAACAGCGGCG 59.857 57.895 0.51 0.51 41.41 6.46
2874 4588 1.072331 AGCAAAGACGACCTGACCAAT 59.928 47.619 0.00 0.00 0.00 3.16
2946 4717 2.411069 CGGCATCGATAATGAAGCTGAG 59.589 50.000 0.00 0.00 40.47 3.35
2957 4728 0.392327 GAAGCTGAGGACAAGGAGGC 60.392 60.000 0.00 0.00 0.00 4.70
2958 4729 1.130054 AAGCTGAGGACAAGGAGGCA 61.130 55.000 0.00 0.00 0.00 4.75
3010 4781 0.037882 CAGTCTCGCAAAGGAGCTGA 60.038 55.000 0.00 0.00 38.93 4.26
3132 4903 1.973812 GAGCTTGGGTGAAGGTGGC 60.974 63.158 0.00 0.00 42.62 5.01
3179 4950 2.435586 CTCGCTCAAGGGTGCCAG 60.436 66.667 0.00 0.00 0.00 4.85
3236 5025 1.736032 CGACGAGGAACCACAGATTCC 60.736 57.143 0.00 0.00 45.23 3.01
3274 5066 1.439679 GAACCAACACCCTGATCGAC 58.560 55.000 0.00 0.00 0.00 4.20
3393 5204 7.282224 TGTTTAATTTCTAGCCGATGCAACTAT 59.718 33.333 0.00 0.00 41.13 2.12
3453 5264 0.946221 CCGCGGCTTAATAGGCTCAG 60.946 60.000 14.67 0.00 44.40 3.35
3476 5287 3.341823 CCCTGAGTCTGATTCAGTTTGG 58.658 50.000 23.28 15.86 40.32 3.28
3500 5311 4.930963 TCATTTGTTGTCTTTGTGCGATT 58.069 34.783 0.00 0.00 0.00 3.34
3562 5373 5.275494 CGTTCCAAATTGTAGGTCGTTTTT 58.725 37.500 0.00 0.00 0.00 1.94
3563 5374 5.172411 CGTTCCAAATTGTAGGTCGTTTTTG 59.828 40.000 0.00 0.00 0.00 2.44
3564 5375 6.267070 GTTCCAAATTGTAGGTCGTTTTTGA 58.733 36.000 0.00 0.00 0.00 2.69
3565 5376 5.823353 TCCAAATTGTAGGTCGTTTTTGAC 58.177 37.500 0.00 0.00 38.17 3.18
3570 5381 7.980742 AATTGTAGGTCGTTTTTGACTTTTC 57.019 32.000 0.00 0.00 38.91 2.29
3571 5382 6.746745 TTGTAGGTCGTTTTTGACTTTTCT 57.253 33.333 0.00 0.00 38.91 2.52
3572 5383 7.846644 TTGTAGGTCGTTTTTGACTTTTCTA 57.153 32.000 0.00 0.00 38.91 2.10
3573 5384 7.473027 TGTAGGTCGTTTTTGACTTTTCTAG 57.527 36.000 0.00 0.00 38.91 2.43
3574 5385 7.267128 TGTAGGTCGTTTTTGACTTTTCTAGA 58.733 34.615 0.00 0.00 38.91 2.43
3575 5386 7.929785 TGTAGGTCGTTTTTGACTTTTCTAGAT 59.070 33.333 0.00 0.00 38.91 1.98
3576 5387 7.803279 AGGTCGTTTTTGACTTTTCTAGATT 57.197 32.000 0.00 0.00 38.91 2.40
3577 5388 7.862648 AGGTCGTTTTTGACTTTTCTAGATTC 58.137 34.615 0.00 0.00 38.91 2.52
3578 5389 7.497909 AGGTCGTTTTTGACTTTTCTAGATTCA 59.502 33.333 0.00 0.00 38.91 2.57
3579 5390 8.290325 GGTCGTTTTTGACTTTTCTAGATTCAT 58.710 33.333 0.00 0.00 38.91 2.57
3595 5406 9.702494 TCTAGATTCATAGATGTTTGTATGCAG 57.298 33.333 0.00 0.00 30.95 4.41
3596 5407 7.199541 AGATTCATAGATGTTTGTATGCAGC 57.800 36.000 0.00 0.00 30.95 5.25
3597 5408 6.996879 AGATTCATAGATGTTTGTATGCAGCT 59.003 34.615 0.00 0.00 35.41 4.24
3598 5409 8.152898 AGATTCATAGATGTTTGTATGCAGCTA 58.847 33.333 0.00 0.00 37.87 3.32
3599 5410 8.681486 ATTCATAGATGTTTGTATGCAGCTAA 57.319 30.769 0.00 0.00 37.19 3.09
3600 5411 8.504812 TTCATAGATGTTTGTATGCAGCTAAA 57.495 30.769 0.00 0.00 37.19 1.85
3601 5412 8.681486 TCATAGATGTTTGTATGCAGCTAAAT 57.319 30.769 0.00 0.00 37.19 1.40
3602 5413 9.777297 TCATAGATGTTTGTATGCAGCTAAATA 57.223 29.630 0.00 0.00 37.19 1.40
3628 5439 5.203060 TGTATGCCTACGTACATATGCAA 57.797 39.130 3.09 0.00 42.14 4.08
3629 5440 5.227152 TGTATGCCTACGTACATATGCAAG 58.773 41.667 3.09 0.00 42.14 4.01
3658 5469 9.008965 TCTATGCATCTACAAAAGCTAAAACAA 57.991 29.630 0.19 0.00 0.00 2.83
3673 5484 6.015434 AGCTAAAACAACCTACAATTTGGGAG 60.015 38.462 0.78 0.00 0.00 4.30
3674 5485 6.239204 GCTAAAACAACCTACAATTTGGGAGT 60.239 38.462 0.78 0.00 0.00 3.85
3675 5486 7.040271 GCTAAAACAACCTACAATTTGGGAGTA 60.040 37.037 0.78 0.00 0.00 2.59
3676 5487 7.849322 AAAACAACCTACAATTTGGGAGTAT 57.151 32.000 0.78 0.00 0.00 2.12
3677 5488 8.943594 AAAACAACCTACAATTTGGGAGTATA 57.056 30.769 0.78 0.00 0.00 1.47
3776 5596 8.691661 AAACTTCAACAGGCTCTTTAATTAGA 57.308 30.769 0.00 0.00 0.00 2.10
3833 5653 7.016153 TCTTTCTAGCCAAAGTGGAGAATAA 57.984 36.000 0.00 0.00 40.96 1.40
3834 5654 7.106239 TCTTTCTAGCCAAAGTGGAGAATAAG 58.894 38.462 0.00 0.00 40.96 1.73
3852 5672 7.246027 AGAATAAGAGGTTACCCCACAAAAAT 58.754 34.615 0.00 0.00 34.66 1.82
3869 5689 9.034544 CCACAAAAATAAAAGAAAAGTGGAGAG 57.965 33.333 0.00 0.00 45.05 3.20
3911 5731 9.250624 AGAATACGCACAAGATATAGAGAAAAC 57.749 33.333 0.00 0.00 0.00 2.43
3912 5732 9.250624 GAATACGCACAAGATATAGAGAAAACT 57.749 33.333 0.00 0.00 0.00 2.66
3914 5734 9.900710 ATACGCACAAGATATAGAGAAAACTAG 57.099 33.333 0.00 0.00 0.00 2.57
3915 5735 7.997482 ACGCACAAGATATAGAGAAAACTAGA 58.003 34.615 0.00 0.00 0.00 2.43
3916 5736 8.634444 ACGCACAAGATATAGAGAAAACTAGAT 58.366 33.333 0.00 0.00 0.00 1.98
3917 5737 9.123709 CGCACAAGATATAGAGAAAACTAGATC 57.876 37.037 0.00 0.00 39.74 2.75
3918 5738 9.418045 GCACAAGATATAGAGAAAACTAGATCC 57.582 37.037 0.00 0.00 40.07 3.36
3926 5746 5.679601 AGAGAAAACTAGATCCTTGATGGC 58.320 41.667 0.00 0.00 35.26 4.40
3927 5747 4.446371 AGAAAACTAGATCCTTGATGGCG 58.554 43.478 0.00 0.00 35.26 5.69
3928 5748 2.246719 AACTAGATCCTTGATGGCGC 57.753 50.000 0.00 0.00 35.26 6.53
3929 5749 0.032678 ACTAGATCCTTGATGGCGCG 59.967 55.000 0.00 0.00 35.26 6.86
3930 5750 0.032678 CTAGATCCTTGATGGCGCGT 59.967 55.000 8.43 0.00 35.26 6.01
3931 5751 0.249447 TAGATCCTTGATGGCGCGTG 60.249 55.000 8.43 0.00 35.26 5.34
3932 5752 1.815421 GATCCTTGATGGCGCGTGT 60.815 57.895 8.43 0.00 35.26 4.49
3933 5753 1.369091 GATCCTTGATGGCGCGTGTT 61.369 55.000 8.43 0.00 35.26 3.32
3934 5754 1.647545 ATCCTTGATGGCGCGTGTTG 61.648 55.000 8.43 0.00 35.26 3.33
3935 5755 2.502510 CTTGATGGCGCGTGTTGC 60.503 61.111 8.43 0.00 41.47 4.17
3947 5767 4.089239 TGTTGCCGCGGCCATCTA 62.089 61.111 44.42 25.61 41.09 1.98
3948 5768 2.591715 GTTGCCGCGGCCATCTAT 60.592 61.111 44.42 0.00 41.09 1.98
3949 5769 2.186826 GTTGCCGCGGCCATCTATT 61.187 57.895 44.42 0.00 41.09 1.73
3950 5770 1.453015 TTGCCGCGGCCATCTATTT 60.453 52.632 44.42 0.00 41.09 1.40
3951 5771 1.034838 TTGCCGCGGCCATCTATTTT 61.035 50.000 44.42 0.00 41.09 1.82
3952 5772 1.034838 TGCCGCGGCCATCTATTTTT 61.035 50.000 44.42 0.00 41.09 1.94
3953 5773 0.948678 GCCGCGGCCATCTATTTTTA 59.051 50.000 39.89 0.00 34.56 1.52
3954 5774 1.334689 GCCGCGGCCATCTATTTTTAC 60.335 52.381 39.89 6.34 34.56 2.01
3955 5775 1.944024 CCGCGGCCATCTATTTTTACA 59.056 47.619 14.67 0.00 0.00 2.41
3956 5776 2.356382 CCGCGGCCATCTATTTTTACAA 59.644 45.455 14.67 0.00 0.00 2.41
3957 5777 3.359654 CGCGGCCATCTATTTTTACAAC 58.640 45.455 2.24 0.00 0.00 3.32
3958 5778 3.181505 CGCGGCCATCTATTTTTACAACA 60.182 43.478 2.24 0.00 0.00 3.33
3959 5779 4.673061 CGCGGCCATCTATTTTTACAACAA 60.673 41.667 2.24 0.00 0.00 2.83
3960 5780 5.164954 GCGGCCATCTATTTTTACAACAAA 58.835 37.500 2.24 0.00 0.00 2.83
3961 5781 5.635700 GCGGCCATCTATTTTTACAACAAAA 59.364 36.000 2.24 0.00 0.00 2.44
3962 5782 6.312672 GCGGCCATCTATTTTTACAACAAAAT 59.687 34.615 2.24 0.00 39.28 1.82
3963 5783 7.673776 GCGGCCATCTATTTTTACAACAAAATG 60.674 37.037 2.24 0.00 37.04 2.32
3964 5784 7.543868 CGGCCATCTATTTTTACAACAAAATGA 59.456 33.333 2.24 0.00 37.04 2.57
3965 5785 9.382275 GGCCATCTATTTTTACAACAAAATGAT 57.618 29.630 0.00 1.77 37.04 2.45
4006 5826 9.752228 ATATATGGCCACACATTTGTATAATCA 57.248 29.630 8.16 0.00 33.30 2.57
4007 5827 6.982160 ATGGCCACACATTTGTATAATCAT 57.018 33.333 8.16 0.00 33.30 2.45
4008 5828 9.752228 ATATGGCCACACATTTGTATAATCATA 57.248 29.630 8.16 0.00 33.30 2.15
4009 5829 7.888250 TGGCCACACATTTGTATAATCATAA 57.112 32.000 0.00 0.00 33.30 1.90
4010 5830 7.711846 TGGCCACACATTTGTATAATCATAAC 58.288 34.615 0.00 0.00 33.30 1.89
4011 5831 7.340487 TGGCCACACATTTGTATAATCATAACA 59.660 33.333 0.00 0.00 33.30 2.41
4012 5832 8.194104 GGCCACACATTTGTATAATCATAACAA 58.806 33.333 0.00 0.00 33.30 2.83
4013 5833 9.748708 GCCACACATTTGTATAATCATAACAAT 57.251 29.630 0.00 0.00 33.30 2.71
4034 5854 9.542462 AACAATATATTACTCAACAGTATGCGT 57.458 29.630 0.00 0.00 42.53 5.24
4035 5855 9.193133 ACAATATATTACTCAACAGTATGCGTC 57.807 33.333 0.00 0.00 42.53 5.19
4036 5856 8.648097 CAATATATTACTCAACAGTATGCGTCC 58.352 37.037 0.00 0.00 42.53 4.79
4037 5857 3.945981 TTACTCAACAGTATGCGTCCA 57.054 42.857 0.00 0.00 42.53 4.02
4038 5858 4.465632 TTACTCAACAGTATGCGTCCAT 57.534 40.909 0.00 0.00 42.53 3.41
4039 5859 2.893637 ACTCAACAGTATGCGTCCATC 58.106 47.619 0.00 0.00 42.53 3.51
4040 5860 2.497675 ACTCAACAGTATGCGTCCATCT 59.502 45.455 0.00 0.00 42.53 2.90
4041 5861 3.699538 ACTCAACAGTATGCGTCCATCTA 59.300 43.478 0.00 0.00 42.53 1.98
4042 5862 4.342378 ACTCAACAGTATGCGTCCATCTAT 59.658 41.667 0.00 0.00 42.53 1.98
4043 5863 5.535030 ACTCAACAGTATGCGTCCATCTATA 59.465 40.000 0.00 0.00 42.53 1.31
4044 5864 6.209589 ACTCAACAGTATGCGTCCATCTATAT 59.790 38.462 0.00 0.00 42.53 0.86
4045 5865 6.993079 TCAACAGTATGCGTCCATCTATATT 58.007 36.000 0.00 0.00 42.53 1.28
4046 5866 7.441836 TCAACAGTATGCGTCCATCTATATTT 58.558 34.615 0.00 0.00 42.53 1.40
4047 5867 8.581578 TCAACAGTATGCGTCCATCTATATTTA 58.418 33.333 0.00 0.00 42.53 1.40
4048 5868 9.371136 CAACAGTATGCGTCCATCTATATTTAT 57.629 33.333 0.00 0.00 42.53 1.40
4049 5869 8.932945 ACAGTATGCGTCCATCTATATTTATG 57.067 34.615 0.00 0.00 42.53 1.90
4050 5870 8.749354 ACAGTATGCGTCCATCTATATTTATGA 58.251 33.333 0.00 0.00 42.53 2.15
4051 5871 9.755804 CAGTATGCGTCCATCTATATTTATGAT 57.244 33.333 0.00 0.00 32.85 2.45
4097 5917 9.848710 AATATATCAAGATATGAGGCATGAAGG 57.151 33.333 11.80 0.00 42.53 3.46
4098 5918 5.579753 ATCAAGATATGAGGCATGAAGGT 57.420 39.130 0.00 0.00 42.53 3.50
4099 5919 5.378230 TCAAGATATGAGGCATGAAGGTT 57.622 39.130 0.00 0.00 33.04 3.50
4100 5920 5.759059 TCAAGATATGAGGCATGAAGGTTT 58.241 37.500 0.00 0.00 33.04 3.27
4101 5921 6.899089 TCAAGATATGAGGCATGAAGGTTTA 58.101 36.000 0.00 0.00 33.04 2.01
4102 5922 7.345691 TCAAGATATGAGGCATGAAGGTTTAA 58.654 34.615 0.00 0.00 33.04 1.52
4103 5923 8.000709 TCAAGATATGAGGCATGAAGGTTTAAT 58.999 33.333 0.00 0.00 33.04 1.40
4104 5924 8.636213 CAAGATATGAGGCATGAAGGTTTAATT 58.364 33.333 0.00 0.00 0.00 1.40
4105 5925 8.773033 AGATATGAGGCATGAAGGTTTAATTT 57.227 30.769 0.00 0.00 0.00 1.82
4106 5926 8.636213 AGATATGAGGCATGAAGGTTTAATTTG 58.364 33.333 0.00 0.00 0.00 2.32
4107 5927 6.610075 ATGAGGCATGAAGGTTTAATTTGT 57.390 33.333 0.00 0.00 0.00 2.83
4108 5928 7.716799 ATGAGGCATGAAGGTTTAATTTGTA 57.283 32.000 0.00 0.00 0.00 2.41
4109 5929 7.716799 TGAGGCATGAAGGTTTAATTTGTAT 57.283 32.000 0.00 0.00 0.00 2.29
4110 5930 8.815565 TGAGGCATGAAGGTTTAATTTGTATA 57.184 30.769 0.00 0.00 0.00 1.47
4111 5931 9.249053 TGAGGCATGAAGGTTTAATTTGTATAA 57.751 29.630 0.00 0.00 0.00 0.98
4113 5933 9.869757 AGGCATGAAGGTTTAATTTGTATAAAC 57.130 29.630 0.00 0.00 40.74 2.01
4114 5934 9.869757 GGCATGAAGGTTTAATTTGTATAAACT 57.130 29.630 0.00 0.00 41.06 2.66
4121 5941 9.825706 AGGTTTAATTTGTATAAACTTACCCCA 57.174 29.630 8.53 0.00 41.06 4.96
4137 5957 9.456459 AACTTACCCCATATTAGGTAGTAATGT 57.544 33.333 1.82 0.00 39.72 2.71
4161 5981 9.743057 TGTAAGTAGTGAATTTGAATGGTTTTG 57.257 29.630 0.00 0.00 0.00 2.44
4162 5982 7.713764 AAGTAGTGAATTTGAATGGTTTTGC 57.286 32.000 0.00 0.00 0.00 3.68
4163 5983 6.815089 AGTAGTGAATTTGAATGGTTTTGCA 58.185 32.000 0.00 0.00 0.00 4.08
4164 5984 7.271511 AGTAGTGAATTTGAATGGTTTTGCAA 58.728 30.769 0.00 0.00 0.00 4.08
4165 5985 7.933033 AGTAGTGAATTTGAATGGTTTTGCAAT 59.067 29.630 0.00 0.00 0.00 3.56
4166 5986 7.571080 AGTGAATTTGAATGGTTTTGCAATT 57.429 28.000 0.00 0.00 0.00 2.32
4167 5987 7.419204 AGTGAATTTGAATGGTTTTGCAATTG 58.581 30.769 0.00 0.00 0.00 2.32
4168 5988 7.282675 AGTGAATTTGAATGGTTTTGCAATTGA 59.717 29.630 10.34 0.00 0.00 2.57
4169 5989 7.914346 GTGAATTTGAATGGTTTTGCAATTGAA 59.086 29.630 10.34 0.00 0.00 2.69
4170 5990 8.129840 TGAATTTGAATGGTTTTGCAATTGAAG 58.870 29.630 10.34 0.00 0.00 3.02
4171 5991 7.804843 ATTTGAATGGTTTTGCAATTGAAGA 57.195 28.000 10.34 0.00 0.00 2.87
4172 5992 7.621428 TTTGAATGGTTTTGCAATTGAAGAA 57.379 28.000 10.34 0.00 0.00 2.52
4173 5993 7.621428 TTGAATGGTTTTGCAATTGAAGAAA 57.379 28.000 10.34 3.57 0.00 2.52
4174 5994 7.249186 TGAATGGTTTTGCAATTGAAGAAAG 57.751 32.000 10.34 0.00 0.00 2.62
4175 5995 7.046652 TGAATGGTTTTGCAATTGAAGAAAGA 58.953 30.769 10.34 0.00 0.00 2.52
4176 5996 7.551974 TGAATGGTTTTGCAATTGAAGAAAGAA 59.448 29.630 10.34 0.00 0.00 2.52
4177 5997 7.862512 ATGGTTTTGCAATTGAAGAAAGAAA 57.137 28.000 10.34 0.00 0.00 2.52
4178 5998 7.306205 TGGTTTTGCAATTGAAGAAAGAAAG 57.694 32.000 10.34 0.00 0.00 2.62
4179 5999 7.102346 TGGTTTTGCAATTGAAGAAAGAAAGA 58.898 30.769 10.34 0.00 0.00 2.52
4180 6000 7.605691 TGGTTTTGCAATTGAAGAAAGAAAGAA 59.394 29.630 10.34 0.00 0.00 2.52
4181 6001 7.904977 GGTTTTGCAATTGAAGAAAGAAAGAAC 59.095 33.333 10.34 0.00 0.00 3.01
4182 6002 8.442384 GTTTTGCAATTGAAGAAAGAAAGAACA 58.558 29.630 10.34 0.00 0.00 3.18
4183 6003 8.721019 TTTGCAATTGAAGAAAGAAAGAACAT 57.279 26.923 10.34 0.00 0.00 2.71
4184 6004 7.703298 TGCAATTGAAGAAAGAAAGAACATG 57.297 32.000 10.34 0.00 0.00 3.21
4185 6005 7.490840 TGCAATTGAAGAAAGAAAGAACATGA 58.509 30.769 10.34 0.00 0.00 3.07
4186 6006 8.145767 TGCAATTGAAGAAAGAAAGAACATGAT 58.854 29.630 10.34 0.00 0.00 2.45
4187 6007 8.433126 GCAATTGAAGAAAGAAAGAACATGATG 58.567 33.333 10.34 0.00 0.00 3.07
4188 6008 8.433126 CAATTGAAGAAAGAAAGAACATGATGC 58.567 33.333 0.00 0.00 0.00 3.91
4189 6009 6.638096 TGAAGAAAGAAAGAACATGATGCA 57.362 33.333 0.00 0.00 0.00 3.96
4190 6010 6.441274 TGAAGAAAGAAAGAACATGATGCAC 58.559 36.000 0.00 0.00 0.00 4.57
4191 6011 5.382618 AGAAAGAAAGAACATGATGCACC 57.617 39.130 0.00 0.00 0.00 5.01
4192 6012 4.219288 AGAAAGAAAGAACATGATGCACCC 59.781 41.667 0.00 0.00 0.00 4.61
4193 6013 3.159213 AGAAAGAACATGATGCACCCA 57.841 42.857 0.00 0.00 0.00 4.51
4194 6014 3.499338 AGAAAGAACATGATGCACCCAA 58.501 40.909 0.00 0.00 0.00 4.12
4195 6015 3.896888 AGAAAGAACATGATGCACCCAAA 59.103 39.130 0.00 0.00 0.00 3.28
4196 6016 3.947910 AAGAACATGATGCACCCAAAG 57.052 42.857 0.00 0.00 0.00 2.77
4197 6017 2.880443 AGAACATGATGCACCCAAAGT 58.120 42.857 0.00 0.00 0.00 2.66
4198 6018 4.032960 AGAACATGATGCACCCAAAGTA 57.967 40.909 0.00 0.00 0.00 2.24
4199 6019 4.406456 AGAACATGATGCACCCAAAGTAA 58.594 39.130 0.00 0.00 0.00 2.24
4200 6020 4.832266 AGAACATGATGCACCCAAAGTAAA 59.168 37.500 0.00 0.00 0.00 2.01
4201 6021 5.481473 AGAACATGATGCACCCAAAGTAAAT 59.519 36.000 0.00 0.00 0.00 1.40
4202 6022 5.075858 ACATGATGCACCCAAAGTAAATG 57.924 39.130 0.00 0.00 0.00 2.32
4203 6023 4.081531 ACATGATGCACCCAAAGTAAATGG 60.082 41.667 0.00 0.00 37.71 3.16
4204 6024 3.505386 TGATGCACCCAAAGTAAATGGT 58.495 40.909 0.00 0.00 36.14 3.55
4205 6025 3.900601 TGATGCACCCAAAGTAAATGGTT 59.099 39.130 0.00 0.00 36.14 3.67
4206 6026 4.346418 TGATGCACCCAAAGTAAATGGTTT 59.654 37.500 0.00 0.00 36.14 3.27
4207 6027 4.762289 TGCACCCAAAGTAAATGGTTTT 57.238 36.364 0.00 0.00 36.14 2.43
4208 6028 5.104259 TGCACCCAAAGTAAATGGTTTTT 57.896 34.783 0.00 0.00 36.14 1.94
4242 6062 9.778993 CAGTTTATTTTGTCACATCATTAGAGG 57.221 33.333 0.00 0.00 0.00 3.69
4243 6063 9.739276 AGTTTATTTTGTCACATCATTAGAGGA 57.261 29.630 0.00 0.00 0.00 3.71
4247 6067 8.641498 ATTTTGTCACATCATTAGAGGAAAGT 57.359 30.769 0.00 0.00 0.00 2.66
4248 6068 8.463930 TTTTGTCACATCATTAGAGGAAAGTT 57.536 30.769 0.00 0.00 0.00 2.66
4249 6069 9.567776 TTTTGTCACATCATTAGAGGAAAGTTA 57.432 29.630 0.00 0.00 0.00 2.24
4250 6070 8.777865 TTGTCACATCATTAGAGGAAAGTTAG 57.222 34.615 0.00 0.00 0.00 2.34
4251 6071 7.331026 TGTCACATCATTAGAGGAAAGTTAGG 58.669 38.462 0.00 0.00 0.00 2.69
4252 6072 7.180229 TGTCACATCATTAGAGGAAAGTTAGGA 59.820 37.037 0.00 0.00 0.00 2.94
4253 6073 8.041323 GTCACATCATTAGAGGAAAGTTAGGAA 58.959 37.037 0.00 0.00 0.00 3.36
4254 6074 8.602424 TCACATCATTAGAGGAAAGTTAGGAAA 58.398 33.333 0.00 0.00 0.00 3.13
4255 6075 9.401058 CACATCATTAGAGGAAAGTTAGGAAAT 57.599 33.333 0.00 0.00 0.00 2.17
4256 6076 9.981460 ACATCATTAGAGGAAAGTTAGGAAATT 57.019 29.630 0.00 0.00 0.00 1.82
4258 6078 8.281212 TCATTAGAGGAAAGTTAGGAAATTGC 57.719 34.615 0.00 0.00 0.00 3.56
4259 6079 7.888021 TCATTAGAGGAAAGTTAGGAAATTGCA 59.112 33.333 0.00 0.00 0.00 4.08
4260 6080 5.966742 AGAGGAAAGTTAGGAAATTGCAC 57.033 39.130 0.00 0.00 0.00 4.57
4261 6081 5.385198 AGAGGAAAGTTAGGAAATTGCACA 58.615 37.500 0.00 0.00 0.00 4.57
4262 6082 5.474876 AGAGGAAAGTTAGGAAATTGCACAG 59.525 40.000 0.00 0.00 0.00 3.66
4263 6083 5.385198 AGGAAAGTTAGGAAATTGCACAGA 58.615 37.500 0.00 0.00 0.00 3.41
4264 6084 5.833131 AGGAAAGTTAGGAAATTGCACAGAA 59.167 36.000 0.00 0.00 0.00 3.02
4265 6085 6.323739 AGGAAAGTTAGGAAATTGCACAGAAA 59.676 34.615 0.00 0.00 0.00 2.52
4266 6086 6.983890 GGAAAGTTAGGAAATTGCACAGAAAA 59.016 34.615 0.00 0.00 0.00 2.29
4267 6087 7.494298 GGAAAGTTAGGAAATTGCACAGAAAAA 59.506 33.333 0.00 0.00 0.00 1.94
4268 6088 7.770801 AAGTTAGGAAATTGCACAGAAAAAC 57.229 32.000 0.00 0.00 0.00 2.43
4269 6089 7.112452 AGTTAGGAAATTGCACAGAAAAACT 57.888 32.000 0.00 0.00 0.00 2.66
4270 6090 8.232913 AGTTAGGAAATTGCACAGAAAAACTA 57.767 30.769 0.00 0.00 0.00 2.24
4271 6091 8.135529 AGTTAGGAAATTGCACAGAAAAACTAC 58.864 33.333 0.00 0.00 0.00 2.73
4272 6092 6.715347 AGGAAATTGCACAGAAAAACTACT 57.285 33.333 0.00 0.00 0.00 2.57
4273 6093 7.112452 AGGAAATTGCACAGAAAAACTACTT 57.888 32.000 0.00 0.00 0.00 2.24
4274 6094 8.232913 AGGAAATTGCACAGAAAAACTACTTA 57.767 30.769 0.00 0.00 0.00 2.24
4275 6095 8.860088 AGGAAATTGCACAGAAAAACTACTTAT 58.140 29.630 0.00 0.00 0.00 1.73
4276 6096 9.476202 GGAAATTGCACAGAAAAACTACTTATT 57.524 29.630 0.00 0.00 0.00 1.40
4291 6111 9.563898 AAACTACTTATTTTAGTTAAATGCGCC 57.436 29.630 4.18 0.00 38.56 6.53
4292 6112 7.700505 ACTACTTATTTTAGTTAAATGCGCCC 58.299 34.615 4.18 0.00 37.07 6.13
4293 6113 6.769134 ACTTATTTTAGTTAAATGCGCCCT 57.231 33.333 4.18 0.00 37.07 5.19
4294 6114 7.165460 ACTTATTTTAGTTAAATGCGCCCTT 57.835 32.000 4.18 0.00 37.07 3.95
4295 6115 7.608153 ACTTATTTTAGTTAAATGCGCCCTTT 58.392 30.769 4.18 7.66 37.07 3.11
4296 6116 7.758076 ACTTATTTTAGTTAAATGCGCCCTTTC 59.242 33.333 4.18 0.00 37.07 2.62
4297 6117 4.443913 TTTAGTTAAATGCGCCCTTTCC 57.556 40.909 4.18 0.00 0.00 3.13
4298 6118 2.215942 AGTTAAATGCGCCCTTTCCT 57.784 45.000 4.18 2.22 0.00 3.36
4299 6119 1.818674 AGTTAAATGCGCCCTTTCCTG 59.181 47.619 4.18 0.00 0.00 3.86
4300 6120 1.816224 GTTAAATGCGCCCTTTCCTGA 59.184 47.619 4.18 0.00 0.00 3.86
4301 6121 2.427095 GTTAAATGCGCCCTTTCCTGAT 59.573 45.455 4.18 0.00 0.00 2.90
4302 6122 1.560505 AAATGCGCCCTTTCCTGATT 58.439 45.000 4.18 0.00 0.00 2.57
4303 6123 2.435372 AATGCGCCCTTTCCTGATTA 57.565 45.000 4.18 0.00 0.00 1.75
4304 6124 1.972872 ATGCGCCCTTTCCTGATTAG 58.027 50.000 4.18 0.00 0.00 1.73
4305 6125 0.107214 TGCGCCCTTTCCTGATTAGG 60.107 55.000 4.18 0.00 46.06 2.69
4306 6126 0.107165 GCGCCCTTTCCTGATTAGGT 60.107 55.000 3.04 0.00 44.88 3.08
4307 6127 1.954927 CGCCCTTTCCTGATTAGGTC 58.045 55.000 3.04 0.00 44.88 3.85
4308 6128 1.475213 CGCCCTTTCCTGATTAGGTCC 60.475 57.143 3.04 0.00 44.88 4.46
4309 6129 1.564348 GCCCTTTCCTGATTAGGTCCA 59.436 52.381 3.04 0.00 44.88 4.02
4310 6130 2.422093 GCCCTTTCCTGATTAGGTCCAG 60.422 54.545 3.04 0.00 44.88 3.86
4311 6131 3.115390 CCCTTTCCTGATTAGGTCCAGA 58.885 50.000 3.04 0.00 44.88 3.86
4312 6132 3.718956 CCCTTTCCTGATTAGGTCCAGAT 59.281 47.826 3.04 0.00 44.88 2.90
4313 6133 4.166919 CCCTTTCCTGATTAGGTCCAGATT 59.833 45.833 3.04 0.00 44.88 2.40
4314 6134 5.340360 CCCTTTCCTGATTAGGTCCAGATTT 60.340 44.000 3.04 0.00 44.88 2.17
4315 6135 6.190587 CCTTTCCTGATTAGGTCCAGATTTT 58.809 40.000 3.04 0.00 44.88 1.82
4316 6136 6.096001 CCTTTCCTGATTAGGTCCAGATTTTG 59.904 42.308 3.04 0.00 44.88 2.44
4317 6137 4.526970 TCCTGATTAGGTCCAGATTTTGC 58.473 43.478 3.04 0.00 44.88 3.68
4318 6138 4.018506 TCCTGATTAGGTCCAGATTTTGCA 60.019 41.667 3.04 0.00 44.88 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 1754 7.519004 AGAAATGGAGGGAGTAATAGATGGAAT 59.481 37.037 0.00 0.00 0.00 3.01
176 1801 9.277783 GCTCCATATGTAGTCACTTATTGAAAT 57.722 33.333 1.24 0.00 35.39 2.17
178 1803 7.791029 TGCTCCATATGTAGTCACTTATTGAA 58.209 34.615 1.24 0.00 35.39 2.69
179 1804 7.287696 TCTGCTCCATATGTAGTCACTTATTGA 59.712 37.037 1.24 0.00 0.00 2.57
180 1805 7.436933 TCTGCTCCATATGTAGTCACTTATTG 58.563 38.462 1.24 0.00 0.00 1.90
181 1806 7.603180 TCTGCTCCATATGTAGTCACTTATT 57.397 36.000 1.24 0.00 0.00 1.40
182 1807 7.603180 TTCTGCTCCATATGTAGTCACTTAT 57.397 36.000 1.24 0.00 0.00 1.73
183 1808 7.287696 TCATTCTGCTCCATATGTAGTCACTTA 59.712 37.037 1.24 0.00 0.00 2.24
184 1809 5.939764 TTCTGCTCCATATGTAGTCACTT 57.060 39.130 1.24 0.00 0.00 3.16
185 1810 5.600069 TCATTCTGCTCCATATGTAGTCACT 59.400 40.000 1.24 0.00 0.00 3.41
186 1811 5.847304 TCATTCTGCTCCATATGTAGTCAC 58.153 41.667 1.24 0.00 0.00 3.67
187 1812 5.600069 ACTCATTCTGCTCCATATGTAGTCA 59.400 40.000 1.24 0.00 0.00 3.41
188 1813 5.925397 CACTCATTCTGCTCCATATGTAGTC 59.075 44.000 1.24 0.00 0.00 2.59
189 1814 5.600069 TCACTCATTCTGCTCCATATGTAGT 59.400 40.000 1.24 0.00 0.00 2.73
190 1815 6.094193 TCACTCATTCTGCTCCATATGTAG 57.906 41.667 1.24 0.00 0.00 2.74
191 1816 6.484364 TTCACTCATTCTGCTCCATATGTA 57.516 37.500 1.24 0.00 0.00 2.29
192 1817 5.363562 TTCACTCATTCTGCTCCATATGT 57.636 39.130 1.24 0.00 0.00 2.29
193 1818 6.231951 AGATTCACTCATTCTGCTCCATATG 58.768 40.000 0.00 0.00 0.00 1.78
194 1819 6.436738 AGATTCACTCATTCTGCTCCATAT 57.563 37.500 0.00 0.00 0.00 1.78
195 1820 5.883685 AGATTCACTCATTCTGCTCCATA 57.116 39.130 0.00 0.00 0.00 2.74
196 1821 4.774660 AGATTCACTCATTCTGCTCCAT 57.225 40.909 0.00 0.00 0.00 3.41
197 1822 4.467438 TGTAGATTCACTCATTCTGCTCCA 59.533 41.667 0.00 0.00 0.00 3.86
198 1823 4.808364 GTGTAGATTCACTCATTCTGCTCC 59.192 45.833 0.00 0.00 35.68 4.70
199 1824 5.659463 AGTGTAGATTCACTCATTCTGCTC 58.341 41.667 0.00 0.00 44.07 4.26
200 1825 5.674052 AGTGTAGATTCACTCATTCTGCT 57.326 39.130 0.00 0.00 44.07 4.24
273 1898 9.025041 CCCTCTGTTCCTAAATATTTGTCTTTT 57.975 33.333 11.05 0.00 0.00 2.27
274 1899 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
275 1900 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
276 1901 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
277 1902 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
282 1907 9.453830 AAATCTACTCCCTCTGTTCCTAAATAT 57.546 33.333 0.00 0.00 0.00 1.28
288 1913 6.674419 ACATAAAATCTACTCCCTCTGTTCCT 59.326 38.462 0.00 0.00 0.00 3.36
295 1920 8.033626 CCCGTTATACATAAAATCTACTCCCTC 58.966 40.741 0.00 0.00 0.00 4.30
299 1924 9.408069 CTGACCCGTTATACATAAAATCTACTC 57.592 37.037 0.00 0.00 0.00 2.59
319 1944 1.530323 AACATGCGTTTACCTGACCC 58.470 50.000 0.00 0.00 28.09 4.46
389 2019 3.825908 TTCCAGGGTCCTAAAATGCTT 57.174 42.857 0.00 0.00 0.00 3.91
390 2020 3.431415 GTTTCCAGGGTCCTAAAATGCT 58.569 45.455 0.00 0.00 0.00 3.79
409 2039 5.393896 GCTATGTAAAGGTGTCGTCTAGGTT 60.394 44.000 0.00 0.00 0.00 3.50
504 2138 4.475345 CAGGTATAGCCTCTAGTGGTCTT 58.525 47.826 12.31 2.08 46.96 3.01
536 2174 0.732880 CTCACGTGTTAGGGCAGACG 60.733 60.000 16.51 0.00 37.82 4.18
538 2176 0.601558 GTCTCACGTGTTAGGGCAGA 59.398 55.000 16.51 6.09 0.00 4.26
559 2197 3.052745 CGTGTCCGTGATGATATTCCAG 58.947 50.000 0.00 0.00 0.00 3.86
573 2211 1.068474 CTCTAACCTTTGCGTGTCCG 58.932 55.000 0.00 0.00 37.07 4.79
656 2300 9.658799 AAGGAAAAGAAGGAAAAGAAAAAGAAG 57.341 29.630 0.00 0.00 0.00 2.85
743 2387 8.812972 TCCACTTTAGTTGTGATGTTCTATAGT 58.187 33.333 0.00 0.00 37.60 2.12
744 2388 9.823647 ATCCACTTTAGTTGTGATGTTCTATAG 57.176 33.333 0.00 0.00 37.60 1.31
745 2389 9.599866 CATCCACTTTAGTTGTGATGTTCTATA 57.400 33.333 0.00 0.00 37.60 1.31
746 2390 7.066284 GCATCCACTTTAGTTGTGATGTTCTAT 59.934 37.037 12.00 0.00 37.60 1.98
768 2412 4.201822 CCCTTCAGCTTTACTAAACGCATC 60.202 45.833 0.00 0.00 0.00 3.91
798 2442 5.123587 GATGTTCGATATCGATGCACATC 57.876 43.478 33.69 33.69 46.90 3.06
807 2453 4.042398 ACTTGTTCGGATGTTCGATATCG 58.958 43.478 19.14 19.14 39.03 2.92
808 2454 5.968387 AACTTGTTCGGATGTTCGATATC 57.032 39.130 0.00 0.00 39.03 1.63
809 2455 7.170998 GGATTAACTTGTTCGGATGTTCGATAT 59.829 37.037 0.00 0.00 39.03 1.63
885 2543 2.167900 GGGTCTAGTAGTCGCAATGGTT 59.832 50.000 6.60 0.00 0.00 3.67
895 2553 3.432378 CAAGGACACAGGGTCTAGTAGT 58.568 50.000 1.94 0.00 46.16 2.73
896 2554 2.166664 GCAAGGACACAGGGTCTAGTAG 59.833 54.545 1.94 0.00 46.16 2.57
897 2555 2.176889 GCAAGGACACAGGGTCTAGTA 58.823 52.381 1.94 0.00 46.16 1.82
898 2556 0.977395 GCAAGGACACAGGGTCTAGT 59.023 55.000 1.94 0.00 46.16 2.57
899 2557 1.270907 AGCAAGGACACAGGGTCTAG 58.729 55.000 1.94 0.00 46.16 2.43
900 2558 1.347707 CAAGCAAGGACACAGGGTCTA 59.652 52.381 1.94 0.00 46.16 2.59
901 2559 0.109342 CAAGCAAGGACACAGGGTCT 59.891 55.000 1.94 0.00 46.16 3.85
902 2560 1.518903 GCAAGCAAGGACACAGGGTC 61.519 60.000 0.00 0.00 46.20 4.46
903 2561 1.529244 GCAAGCAAGGACACAGGGT 60.529 57.895 0.00 0.00 0.00 4.34
904 2562 2.270986 GGCAAGCAAGGACACAGGG 61.271 63.158 0.00 0.00 0.00 4.45
944 2610 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
962 2628 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
963 2629 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
964 2630 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
965 2631 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
966 2632 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
967 2633 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
968 2634 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
969 2635 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
970 2636 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
971 2637 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
972 2638 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
973 2639 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
974 2640 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
975 2641 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
976 2642 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
977 2643 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
978 2644 5.860941 TTCTCTCTCTCTCTCTCTCTCTC 57.139 47.826 0.00 0.00 0.00 3.20
979 2645 5.664908 ACATTCTCTCTCTCTCTCTCTCTCT 59.335 44.000 0.00 0.00 0.00 3.10
980 2646 5.923204 ACATTCTCTCTCTCTCTCTCTCTC 58.077 45.833 0.00 0.00 0.00 3.20
981 2647 5.965033 ACATTCTCTCTCTCTCTCTCTCT 57.035 43.478 0.00 0.00 0.00 3.10
982 2648 5.235186 CGAACATTCTCTCTCTCTCTCTCTC 59.765 48.000 0.00 0.00 0.00 3.20
983 2649 5.104941 TCGAACATTCTCTCTCTCTCTCTCT 60.105 44.000 0.00 0.00 0.00 3.10
1020 2716 2.268920 CTGTCCCACCATCCCACG 59.731 66.667 0.00 0.00 0.00 4.94
1071 2767 4.162131 ACCATTAGAAACCATTGAATGCCC 59.838 41.667 0.00 0.00 0.00 5.36
1257 2962 1.145738 AGGATCTTGGCCTTGTTGTGT 59.854 47.619 3.32 0.00 29.44 3.72
1338 3043 2.915463 CTCGTTGTCTTCGATGGTGTAC 59.085 50.000 0.00 0.00 36.73 2.90
1480 3185 2.039746 TGAAACTGACGACCCCAATGAT 59.960 45.455 0.00 0.00 0.00 2.45
1761 3469 1.875963 GTCCGACAAGCCCACATTG 59.124 57.895 0.00 0.00 0.00 2.82
1782 3490 6.071896 CCGAGAGCACCATATAGACTTTATCA 60.072 42.308 0.00 0.00 0.00 2.15
1866 3574 3.179939 GGCCGAAGAACGTCTCGC 61.180 66.667 8.64 5.34 40.78 5.03
1869 3577 0.894184 TCAGAGGCCGAAGAACGTCT 60.894 55.000 0.00 0.00 40.78 4.18
1965 3679 1.623811 ACCAGGTACTTGCGAGTGAAT 59.376 47.619 17.36 0.00 34.60 2.57
2157 3871 2.079925 GGGACACTCTTTGCAGACATC 58.920 52.381 0.00 0.00 0.00 3.06
2289 4003 4.073549 ACTTGCAGTAGTCGAAGTACTCT 58.926 43.478 0.00 0.00 32.28 3.24
2294 4008 1.784525 GCACTTGCAGTAGTCGAAGT 58.215 50.000 0.00 0.00 41.59 3.01
2325 4039 7.173218 ACATTCTTGTACAATGTGTAGTCTTGG 59.827 37.037 9.13 0.00 41.86 3.61
2370 4084 0.465097 CCTGTGCATCCACCAGATCC 60.465 60.000 2.98 0.00 41.35 3.36
2400 4114 1.737793 GTGAAGACCCTGTAATTGGCG 59.262 52.381 0.00 0.00 0.00 5.69
2447 4161 3.790437 CATCCTCCACCGGCAGCT 61.790 66.667 0.00 0.00 0.00 4.24
2636 4350 0.617820 AGGAGTACCTTCCATGCGGT 60.618 55.000 4.14 5.15 45.36 5.68
2845 4559 2.734673 CGTCTTTGCTGAGCGGCTC 61.735 63.158 22.78 22.78 0.00 4.70
2874 4588 3.134879 GGCCCGTGGTCGATGATA 58.865 61.111 0.00 0.00 39.71 2.15
2946 4717 5.921962 AAGATTTTATTGCCTCCTTGTCC 57.078 39.130 0.00 0.00 0.00 4.02
2957 4728 5.861787 GGGACGTGGAACAAAGATTTTATTG 59.138 40.000 0.00 0.00 44.16 1.90
2958 4729 5.047590 GGGGACGTGGAACAAAGATTTTATT 60.048 40.000 0.00 0.00 44.16 1.40
3010 4781 0.872388 GACGGCGGTTCAAGTTTCAT 59.128 50.000 13.24 0.00 0.00 2.57
3274 5066 0.536460 AAACCAGGTAGTTGTGGGCG 60.536 55.000 0.00 0.00 38.25 6.13
3393 5204 0.741221 GCAACAAACAAACCGGGCAA 60.741 50.000 6.32 0.00 0.00 4.52
3453 5264 0.908198 ACTGAATCAGACTCAGGGGC 59.092 55.000 18.20 0.00 43.88 5.80
3462 5273 6.713762 ACAAATGAACCAAACTGAATCAGA 57.286 33.333 18.20 0.00 35.18 3.27
3476 5287 4.101942 TCGCACAAAGACAACAAATGAAC 58.898 39.130 0.00 0.00 0.00 3.18
3500 5311 1.066645 CATGCAGCAGTAGACACCAGA 60.067 52.381 0.00 0.00 0.00 3.86
3570 5381 8.441608 GCTGCATACAAACATCTATGAATCTAG 58.558 37.037 0.00 0.00 0.00 2.43
3571 5382 8.152898 AGCTGCATACAAACATCTATGAATCTA 58.847 33.333 1.02 0.00 0.00 1.98
3572 5383 6.996879 AGCTGCATACAAACATCTATGAATCT 59.003 34.615 1.02 0.00 0.00 2.40
3573 5384 7.199541 AGCTGCATACAAACATCTATGAATC 57.800 36.000 1.02 0.00 0.00 2.52
3574 5385 8.681486 TTAGCTGCATACAAACATCTATGAAT 57.319 30.769 1.02 0.00 0.00 2.57
3575 5386 8.504812 TTTAGCTGCATACAAACATCTATGAA 57.495 30.769 1.02 0.00 0.00 2.57
3576 5387 8.681486 ATTTAGCTGCATACAAACATCTATGA 57.319 30.769 1.02 0.00 0.00 2.15
3587 5398 8.892723 GGCATACATTATATTTAGCTGCATACA 58.107 33.333 1.02 0.00 0.00 2.29
3588 5399 9.113838 AGGCATACATTATATTTAGCTGCATAC 57.886 33.333 1.02 0.00 0.00 2.39
3590 5401 9.113838 GTAGGCATACATTATATTTAGCTGCAT 57.886 33.333 3.13 0.00 31.76 3.96
3591 5402 7.277760 CGTAGGCATACATTATATTTAGCTGCA 59.722 37.037 9.48 0.00 31.76 4.41
3592 5403 7.277981 ACGTAGGCATACATTATATTTAGCTGC 59.722 37.037 9.48 0.00 31.76 5.25
3593 5404 8.703604 ACGTAGGCATACATTATATTTAGCTG 57.296 34.615 9.48 0.00 31.76 4.24
3594 5405 9.798994 GTACGTAGGCATACATTATATTTAGCT 57.201 33.333 9.48 0.00 31.76 3.32
3595 5406 9.577110 TGTACGTAGGCATACATTATATTTAGC 57.423 33.333 9.48 0.00 31.76 3.09
3600 5411 9.692749 GCATATGTACGTAGGCATACATTATAT 57.307 33.333 23.16 5.67 41.27 0.86
3601 5412 8.688151 TGCATATGTACGTAGGCATACATTATA 58.312 33.333 26.00 4.72 41.27 0.98
3602 5413 7.552459 TGCATATGTACGTAGGCATACATTAT 58.448 34.615 26.00 0.29 41.27 1.28
3603 5414 6.926313 TGCATATGTACGTAGGCATACATTA 58.074 36.000 26.00 6.05 41.27 1.90
3604 5415 5.789521 TGCATATGTACGTAGGCATACATT 58.210 37.500 26.00 0.00 41.27 2.71
3605 5416 5.400066 TGCATATGTACGTAGGCATACAT 57.600 39.130 26.00 6.38 43.02 2.29
3612 5423 4.560128 AGATGCTTGCATATGTACGTAGG 58.440 43.478 8.17 2.35 0.00 3.18
3640 5451 8.508883 TTGTAGGTTGTTTTAGCTTTTGTAGA 57.491 30.769 0.00 0.00 0.00 2.59
3644 5455 8.334632 CCAAATTGTAGGTTGTTTTAGCTTTTG 58.665 33.333 0.00 0.00 0.00 2.44
3791 5611 6.058183 AGAAAGAAATCCGGAATAGATGGTG 58.942 40.000 9.01 0.00 0.00 4.17
3852 5672 7.501225 CCAACCTTACTCTCCACTTTTCTTTTA 59.499 37.037 0.00 0.00 0.00 1.52
3869 5689 5.006455 GCGTATTCTAGAAAGCCAACCTTAC 59.994 44.000 9.71 3.43 32.20 2.34
3906 5726 3.002759 GCGCCATCAAGGATCTAGTTTTC 59.997 47.826 0.00 0.00 41.22 2.29
3911 5731 0.032678 ACGCGCCATCAAGGATCTAG 59.967 55.000 5.73 0.00 41.22 2.43
3912 5732 0.249447 CACGCGCCATCAAGGATCTA 60.249 55.000 5.73 0.00 41.22 1.98
3913 5733 1.522355 CACGCGCCATCAAGGATCT 60.522 57.895 5.73 0.00 41.22 2.75
3914 5734 1.369091 AACACGCGCCATCAAGGATC 61.369 55.000 5.73 0.00 41.22 3.36
3915 5735 1.377202 AACACGCGCCATCAAGGAT 60.377 52.632 5.73 0.00 41.22 3.24
3916 5736 2.031919 AACACGCGCCATCAAGGA 59.968 55.556 5.73 0.00 41.22 3.36
3917 5737 2.176546 CAACACGCGCCATCAAGG 59.823 61.111 5.73 0.00 41.84 3.61
3918 5738 2.502510 GCAACACGCGCCATCAAG 60.503 61.111 5.73 0.00 0.00 3.02
3930 5750 2.884997 AATAGATGGCCGCGGCAACA 62.885 55.000 46.88 36.94 42.43 3.33
3931 5751 1.724582 AAATAGATGGCCGCGGCAAC 61.725 55.000 46.88 34.96 42.43 4.17
3932 5752 1.034838 AAAATAGATGGCCGCGGCAA 61.035 50.000 46.88 40.84 42.43 4.52
3933 5753 1.034838 AAAAATAGATGGCCGCGGCA 61.035 50.000 46.88 33.74 44.11 5.69
3934 5754 0.948678 TAAAAATAGATGGCCGCGGC 59.051 50.000 41.63 41.63 41.06 6.53
3935 5755 1.944024 TGTAAAAATAGATGGCCGCGG 59.056 47.619 24.05 24.05 0.00 6.46
3936 5756 3.181505 TGTTGTAAAAATAGATGGCCGCG 60.182 43.478 0.00 0.00 0.00 6.46
3937 5757 4.364415 TGTTGTAAAAATAGATGGCCGC 57.636 40.909 0.00 0.00 0.00 6.53
3938 5758 7.543868 TCATTTTGTTGTAAAAATAGATGGCCG 59.456 33.333 0.00 0.00 37.59 6.13
3939 5759 8.770438 TCATTTTGTTGTAAAAATAGATGGCC 57.230 30.769 0.00 0.00 37.59 5.36
3980 5800 9.752228 TGATTATACAAATGTGTGGCCATATAT 57.248 29.630 9.72 7.47 38.82 0.86
3981 5801 9.752228 ATGATTATACAAATGTGTGGCCATATA 57.248 29.630 9.72 4.56 38.82 0.86
3982 5802 8.654485 ATGATTATACAAATGTGTGGCCATAT 57.346 30.769 9.72 2.15 38.82 1.78
3983 5803 9.579932 TTATGATTATACAAATGTGTGGCCATA 57.420 29.630 9.72 1.91 38.82 2.74
3984 5804 6.982160 ATGATTATACAAATGTGTGGCCAT 57.018 33.333 9.72 0.00 38.82 4.40
3985 5805 7.340487 TGTTATGATTATACAAATGTGTGGCCA 59.660 33.333 0.00 0.00 38.82 5.36
3986 5806 7.711846 TGTTATGATTATACAAATGTGTGGCC 58.288 34.615 0.00 0.00 38.82 5.36
3987 5807 9.748708 ATTGTTATGATTATACAAATGTGTGGC 57.251 29.630 0.00 0.00 38.82 5.01
4008 5828 9.542462 ACGCATACTGTTGAGTAATATATTGTT 57.458 29.630 8.28 0.00 38.21 2.83
4009 5829 9.193133 GACGCATACTGTTGAGTAATATATTGT 57.807 33.333 8.28 0.00 38.21 2.71
4010 5830 8.648097 GGACGCATACTGTTGAGTAATATATTG 58.352 37.037 8.28 0.00 38.21 1.90
4011 5831 8.364894 TGGACGCATACTGTTGAGTAATATATT 58.635 33.333 2.97 2.97 38.21 1.28
4012 5832 7.892609 TGGACGCATACTGTTGAGTAATATAT 58.107 34.615 0.00 0.00 38.21 0.86
4013 5833 7.279750 TGGACGCATACTGTTGAGTAATATA 57.720 36.000 0.00 0.00 38.21 0.86
4014 5834 6.156748 TGGACGCATACTGTTGAGTAATAT 57.843 37.500 0.00 0.00 38.21 1.28
4015 5835 5.585820 TGGACGCATACTGTTGAGTAATA 57.414 39.130 0.00 0.00 38.21 0.98
4016 5836 4.465632 TGGACGCATACTGTTGAGTAAT 57.534 40.909 0.00 0.00 38.21 1.89
4017 5837 3.945981 TGGACGCATACTGTTGAGTAA 57.054 42.857 0.00 0.00 38.21 2.24
4018 5838 3.699538 AGATGGACGCATACTGTTGAGTA 59.300 43.478 0.00 0.00 39.07 2.59
4019 5839 2.497675 AGATGGACGCATACTGTTGAGT 59.502 45.455 0.00 0.00 36.07 3.41
4020 5840 3.170791 AGATGGACGCATACTGTTGAG 57.829 47.619 0.00 0.00 0.00 3.02
4021 5841 4.937201 ATAGATGGACGCATACTGTTGA 57.063 40.909 0.00 0.00 0.00 3.18
4022 5842 7.658179 AAATATAGATGGACGCATACTGTTG 57.342 36.000 0.00 0.00 0.00 3.33
4023 5843 9.371136 CATAAATATAGATGGACGCATACTGTT 57.629 33.333 0.00 0.00 0.00 3.16
4024 5844 8.749354 TCATAAATATAGATGGACGCATACTGT 58.251 33.333 0.00 0.00 0.00 3.55
4025 5845 9.755804 ATCATAAATATAGATGGACGCATACTG 57.244 33.333 0.00 0.00 0.00 2.74
4071 5891 9.848710 CCTTCATGCCTCATATCTTGATATATT 57.151 33.333 3.16 0.00 32.72 1.28
4072 5892 9.000978 ACCTTCATGCCTCATATCTTGATATAT 57.999 33.333 3.16 0.00 32.72 0.86
4073 5893 8.384693 ACCTTCATGCCTCATATCTTGATATA 57.615 34.615 3.16 0.00 32.72 0.86
4074 5894 7.268212 ACCTTCATGCCTCATATCTTGATAT 57.732 36.000 0.00 0.00 32.72 1.63
4075 5895 6.692849 ACCTTCATGCCTCATATCTTGATA 57.307 37.500 0.00 0.00 32.72 2.15
4076 5896 5.579753 ACCTTCATGCCTCATATCTTGAT 57.420 39.130 0.00 0.00 32.72 2.57
4077 5897 5.378230 AACCTTCATGCCTCATATCTTGA 57.622 39.130 0.00 0.00 0.00 3.02
4078 5898 7.572523 TTAAACCTTCATGCCTCATATCTTG 57.427 36.000 0.00 0.00 0.00 3.02
4079 5899 8.773033 AATTAAACCTTCATGCCTCATATCTT 57.227 30.769 0.00 0.00 0.00 2.40
4080 5900 8.636213 CAAATTAAACCTTCATGCCTCATATCT 58.364 33.333 0.00 0.00 0.00 1.98
4081 5901 8.416329 ACAAATTAAACCTTCATGCCTCATATC 58.584 33.333 0.00 0.00 0.00 1.63
4082 5902 8.310122 ACAAATTAAACCTTCATGCCTCATAT 57.690 30.769 0.00 0.00 0.00 1.78
4083 5903 7.716799 ACAAATTAAACCTTCATGCCTCATA 57.283 32.000 0.00 0.00 0.00 2.15
4084 5904 6.610075 ACAAATTAAACCTTCATGCCTCAT 57.390 33.333 0.00 0.00 0.00 2.90
4085 5905 7.716799 ATACAAATTAAACCTTCATGCCTCA 57.283 32.000 0.00 0.00 0.00 3.86
4087 5907 9.869757 GTTTATACAAATTAAACCTTCATGCCT 57.130 29.630 0.00 0.00 0.00 4.75
4088 5908 9.869757 AGTTTATACAAATTAAACCTTCATGCC 57.130 29.630 3.41 0.00 35.07 4.40
4095 5915 9.825706 TGGGGTAAGTTTATACAAATTAAACCT 57.174 29.630 3.41 0.00 35.07 3.50
4111 5931 9.456459 ACATTACTACCTAATATGGGGTAAGTT 57.544 33.333 8.01 0.00 37.59 2.66
4135 5955 9.743057 CAAAACCATTCAAATTCACTACTTACA 57.257 29.630 0.00 0.00 0.00 2.41
4136 5956 8.699749 GCAAAACCATTCAAATTCACTACTTAC 58.300 33.333 0.00 0.00 0.00 2.34
4137 5957 8.417106 TGCAAAACCATTCAAATTCACTACTTA 58.583 29.630 0.00 0.00 0.00 2.24
4138 5958 7.271511 TGCAAAACCATTCAAATTCACTACTT 58.728 30.769 0.00 0.00 0.00 2.24
4139 5959 6.815089 TGCAAAACCATTCAAATTCACTACT 58.185 32.000 0.00 0.00 0.00 2.57
4140 5960 7.475771 TTGCAAAACCATTCAAATTCACTAC 57.524 32.000 0.00 0.00 0.00 2.73
4141 5961 8.557864 CAATTGCAAAACCATTCAAATTCACTA 58.442 29.630 1.71 0.00 0.00 2.74
4142 5962 7.282675 TCAATTGCAAAACCATTCAAATTCACT 59.717 29.630 1.71 0.00 0.00 3.41
4143 5963 7.416022 TCAATTGCAAAACCATTCAAATTCAC 58.584 30.769 1.71 0.00 0.00 3.18
4144 5964 7.563888 TCAATTGCAAAACCATTCAAATTCA 57.436 28.000 1.71 0.00 0.00 2.57
4145 5965 8.344098 TCTTCAATTGCAAAACCATTCAAATTC 58.656 29.630 1.71 0.00 0.00 2.17
4146 5966 8.223177 TCTTCAATTGCAAAACCATTCAAATT 57.777 26.923 1.71 0.00 0.00 1.82
4147 5967 7.804843 TCTTCAATTGCAAAACCATTCAAAT 57.195 28.000 1.71 0.00 0.00 2.32
4148 5968 7.621428 TTCTTCAATTGCAAAACCATTCAAA 57.379 28.000 1.71 0.00 0.00 2.69
4149 5969 7.551974 TCTTTCTTCAATTGCAAAACCATTCAA 59.448 29.630 1.71 0.00 0.00 2.69
4150 5970 7.046652 TCTTTCTTCAATTGCAAAACCATTCA 58.953 30.769 1.71 0.00 0.00 2.57
4151 5971 7.481275 TCTTTCTTCAATTGCAAAACCATTC 57.519 32.000 1.71 0.00 0.00 2.67
4152 5972 7.862512 TTCTTTCTTCAATTGCAAAACCATT 57.137 28.000 1.71 0.00 0.00 3.16
4153 5973 7.769970 TCTTTCTTTCTTCAATTGCAAAACCAT 59.230 29.630 1.71 0.00 0.00 3.55
4154 5974 7.102346 TCTTTCTTTCTTCAATTGCAAAACCA 58.898 30.769 1.71 0.00 0.00 3.67
4155 5975 7.538303 TCTTTCTTTCTTCAATTGCAAAACC 57.462 32.000 1.71 0.00 0.00 3.27
4156 5976 8.442384 TGTTCTTTCTTTCTTCAATTGCAAAAC 58.558 29.630 1.71 0.00 0.00 2.43
4157 5977 8.545229 TGTTCTTTCTTTCTTCAATTGCAAAA 57.455 26.923 1.71 0.00 0.00 2.44
4158 5978 8.605746 CATGTTCTTTCTTTCTTCAATTGCAAA 58.394 29.630 1.71 0.00 0.00 3.68
4159 5979 7.980662 TCATGTTCTTTCTTTCTTCAATTGCAA 59.019 29.630 0.00 0.00 0.00 4.08
4160 5980 7.490840 TCATGTTCTTTCTTTCTTCAATTGCA 58.509 30.769 0.00 0.00 0.00 4.08
4161 5981 7.935338 TCATGTTCTTTCTTTCTTCAATTGC 57.065 32.000 0.00 0.00 0.00 3.56
4162 5982 8.433126 GCATCATGTTCTTTCTTTCTTCAATTG 58.567 33.333 0.00 0.00 0.00 2.32
4163 5983 8.145767 TGCATCATGTTCTTTCTTTCTTCAATT 58.854 29.630 0.00 0.00 0.00 2.32
4164 5984 7.597743 GTGCATCATGTTCTTTCTTTCTTCAAT 59.402 33.333 0.00 0.00 0.00 2.57
4165 5985 6.919662 GTGCATCATGTTCTTTCTTTCTTCAA 59.080 34.615 0.00 0.00 0.00 2.69
4166 5986 6.441274 GTGCATCATGTTCTTTCTTTCTTCA 58.559 36.000 0.00 0.00 0.00 3.02
4167 5987 5.860716 GGTGCATCATGTTCTTTCTTTCTTC 59.139 40.000 0.00 0.00 0.00 2.87
4168 5988 5.279156 GGGTGCATCATGTTCTTTCTTTCTT 60.279 40.000 0.00 0.00 0.00 2.52
4169 5989 4.219288 GGGTGCATCATGTTCTTTCTTTCT 59.781 41.667 0.00 0.00 0.00 2.52
4170 5990 4.022068 TGGGTGCATCATGTTCTTTCTTTC 60.022 41.667 0.00 0.00 0.00 2.62
4171 5991 3.896888 TGGGTGCATCATGTTCTTTCTTT 59.103 39.130 0.00 0.00 0.00 2.52
4172 5992 3.499338 TGGGTGCATCATGTTCTTTCTT 58.501 40.909 0.00 0.00 0.00 2.52
4173 5993 3.159213 TGGGTGCATCATGTTCTTTCT 57.841 42.857 0.00 0.00 0.00 2.52
4174 5994 3.940209 TTGGGTGCATCATGTTCTTTC 57.060 42.857 0.00 0.00 0.00 2.62
4175 5995 3.642848 ACTTTGGGTGCATCATGTTCTTT 59.357 39.130 0.00 0.00 0.00 2.52
4176 5996 3.233507 ACTTTGGGTGCATCATGTTCTT 58.766 40.909 0.00 0.00 0.00 2.52
4177 5997 2.880443 ACTTTGGGTGCATCATGTTCT 58.120 42.857 0.00 0.00 0.00 3.01
4178 5998 4.782019 TTACTTTGGGTGCATCATGTTC 57.218 40.909 0.00 0.00 0.00 3.18
4179 5999 5.481105 CATTTACTTTGGGTGCATCATGTT 58.519 37.500 0.00 0.00 0.00 2.71
4180 6000 4.081531 CCATTTACTTTGGGTGCATCATGT 60.082 41.667 0.00 2.48 0.00 3.21
4181 6001 4.081531 ACCATTTACTTTGGGTGCATCATG 60.082 41.667 0.00 0.00 38.64 3.07
4182 6002 4.095946 ACCATTTACTTTGGGTGCATCAT 58.904 39.130 0.00 0.00 38.64 2.45
4183 6003 3.505386 ACCATTTACTTTGGGTGCATCA 58.495 40.909 0.00 0.00 38.64 3.07
4184 6004 4.535526 AACCATTTACTTTGGGTGCATC 57.464 40.909 0.00 0.00 38.64 3.91
4185 6005 4.972751 AAACCATTTACTTTGGGTGCAT 57.027 36.364 0.00 0.00 38.64 3.96
4186 6006 4.762289 AAAACCATTTACTTTGGGTGCA 57.238 36.364 0.00 0.00 38.64 4.57
4216 6036 9.778993 CCTCTAATGATGTGACAAAATAAACTG 57.221 33.333 0.00 0.00 0.00 3.16
4217 6037 9.739276 TCCTCTAATGATGTGACAAAATAAACT 57.261 29.630 0.00 0.00 0.00 2.66
4221 6041 9.739276 ACTTTCCTCTAATGATGTGACAAAATA 57.261 29.630 0.00 0.00 0.00 1.40
4222 6042 8.641498 ACTTTCCTCTAATGATGTGACAAAAT 57.359 30.769 0.00 0.00 0.00 1.82
4223 6043 8.463930 AACTTTCCTCTAATGATGTGACAAAA 57.536 30.769 0.00 0.00 0.00 2.44
4224 6044 9.219603 CTAACTTTCCTCTAATGATGTGACAAA 57.780 33.333 0.00 0.00 0.00 2.83
4225 6045 7.824289 CCTAACTTTCCTCTAATGATGTGACAA 59.176 37.037 0.00 0.00 0.00 3.18
4226 6046 7.180229 TCCTAACTTTCCTCTAATGATGTGACA 59.820 37.037 0.00 0.00 0.00 3.58
4227 6047 7.556844 TCCTAACTTTCCTCTAATGATGTGAC 58.443 38.462 0.00 0.00 0.00 3.67
4228 6048 7.733773 TCCTAACTTTCCTCTAATGATGTGA 57.266 36.000 0.00 0.00 0.00 3.58
4229 6049 8.792830 TTTCCTAACTTTCCTCTAATGATGTG 57.207 34.615 0.00 0.00 0.00 3.21
4230 6050 9.981460 AATTTCCTAACTTTCCTCTAATGATGT 57.019 29.630 0.00 0.00 0.00 3.06
4232 6052 8.907885 GCAATTTCCTAACTTTCCTCTAATGAT 58.092 33.333 0.00 0.00 0.00 2.45
4233 6053 7.888021 TGCAATTTCCTAACTTTCCTCTAATGA 59.112 33.333 0.00 0.00 0.00 2.57
4234 6054 7.970614 GTGCAATTTCCTAACTTTCCTCTAATG 59.029 37.037 0.00 0.00 0.00 1.90
4235 6055 7.669722 TGTGCAATTTCCTAACTTTCCTCTAAT 59.330 33.333 0.00 0.00 0.00 1.73
4236 6056 7.001674 TGTGCAATTTCCTAACTTTCCTCTAA 58.998 34.615 0.00 0.00 0.00 2.10
4237 6057 6.539173 TGTGCAATTTCCTAACTTTCCTCTA 58.461 36.000 0.00 0.00 0.00 2.43
4238 6058 5.385198 TGTGCAATTTCCTAACTTTCCTCT 58.615 37.500 0.00 0.00 0.00 3.69
4239 6059 5.473504 TCTGTGCAATTTCCTAACTTTCCTC 59.526 40.000 0.00 0.00 0.00 3.71
4240 6060 5.385198 TCTGTGCAATTTCCTAACTTTCCT 58.615 37.500 0.00 0.00 0.00 3.36
4241 6061 5.705609 TCTGTGCAATTTCCTAACTTTCC 57.294 39.130 0.00 0.00 0.00 3.13
4242 6062 8.328146 GTTTTTCTGTGCAATTTCCTAACTTTC 58.672 33.333 0.00 0.00 0.00 2.62
4243 6063 8.040727 AGTTTTTCTGTGCAATTTCCTAACTTT 58.959 29.630 0.00 0.00 0.00 2.66
4244 6064 7.555965 AGTTTTTCTGTGCAATTTCCTAACTT 58.444 30.769 0.00 0.00 0.00 2.66
4245 6065 7.112452 AGTTTTTCTGTGCAATTTCCTAACT 57.888 32.000 0.00 0.00 0.00 2.24
4246 6066 8.135529 AGTAGTTTTTCTGTGCAATTTCCTAAC 58.864 33.333 0.00 0.00 0.00 2.34
4247 6067 8.232913 AGTAGTTTTTCTGTGCAATTTCCTAA 57.767 30.769 0.00 0.00 0.00 2.69
4248 6068 7.817418 AGTAGTTTTTCTGTGCAATTTCCTA 57.183 32.000 0.00 0.00 0.00 2.94
4249 6069 6.715347 AGTAGTTTTTCTGTGCAATTTCCT 57.285 33.333 0.00 0.00 0.00 3.36
4250 6070 9.476202 AATAAGTAGTTTTTCTGTGCAATTTCC 57.524 29.630 0.00 0.00 0.00 3.13
4265 6085 9.563898 GGCGCATTTAACTAAAATAAGTAGTTT 57.436 29.630 10.83 0.00 41.11 2.66
4266 6086 8.186163 GGGCGCATTTAACTAAAATAAGTAGTT 58.814 33.333 10.83 2.70 42.85 2.24
4267 6087 7.555195 AGGGCGCATTTAACTAAAATAAGTAGT 59.445 33.333 10.83 0.00 35.54 2.73
4268 6088 7.927048 AGGGCGCATTTAACTAAAATAAGTAG 58.073 34.615 10.83 0.00 35.54 2.57
4269 6089 7.868906 AGGGCGCATTTAACTAAAATAAGTA 57.131 32.000 10.83 0.00 35.54 2.24
4270 6090 6.769134 AGGGCGCATTTAACTAAAATAAGT 57.231 33.333 10.83 0.00 35.54 2.24
4271 6091 7.222031 GGAAAGGGCGCATTTAACTAAAATAAG 59.778 37.037 10.83 0.00 35.54 1.73
4272 6092 7.036829 GGAAAGGGCGCATTTAACTAAAATAA 58.963 34.615 10.83 0.00 35.54 1.40
4273 6093 6.378848 AGGAAAGGGCGCATTTAACTAAAATA 59.621 34.615 10.83 0.00 35.54 1.40
4274 6094 5.186992 AGGAAAGGGCGCATTTAACTAAAAT 59.813 36.000 10.83 0.00 38.36 1.82
4275 6095 4.525100 AGGAAAGGGCGCATTTAACTAAAA 59.475 37.500 10.83 0.00 0.00 1.52
4276 6096 4.082463 CAGGAAAGGGCGCATTTAACTAAA 60.082 41.667 10.83 0.00 0.00 1.85
4277 6097 3.442273 CAGGAAAGGGCGCATTTAACTAA 59.558 43.478 10.83 0.00 0.00 2.24
4278 6098 3.013921 CAGGAAAGGGCGCATTTAACTA 58.986 45.455 10.83 0.00 0.00 2.24
4279 6099 1.818674 CAGGAAAGGGCGCATTTAACT 59.181 47.619 10.83 8.72 0.00 2.24
4280 6100 1.816224 TCAGGAAAGGGCGCATTTAAC 59.184 47.619 10.83 6.57 0.00 2.01
4281 6101 2.208132 TCAGGAAAGGGCGCATTTAA 57.792 45.000 10.83 0.00 0.00 1.52
4282 6102 2.435372 ATCAGGAAAGGGCGCATTTA 57.565 45.000 10.83 0.00 0.00 1.40
4283 6103 1.560505 AATCAGGAAAGGGCGCATTT 58.439 45.000 10.83 9.93 0.00 2.32
4284 6104 2.301346 CTAATCAGGAAAGGGCGCATT 58.699 47.619 10.83 0.00 0.00 3.56
4285 6105 1.477558 CCTAATCAGGAAAGGGCGCAT 60.478 52.381 10.83 0.00 45.91 4.73
4286 6106 0.107214 CCTAATCAGGAAAGGGCGCA 60.107 55.000 10.83 0.00 45.91 6.09
4287 6107 0.107165 ACCTAATCAGGAAAGGGCGC 60.107 55.000 0.00 0.00 45.91 6.53
4288 6108 1.475213 GGACCTAATCAGGAAAGGGCG 60.475 57.143 0.00 0.00 45.91 6.13
4289 6109 1.564348 TGGACCTAATCAGGAAAGGGC 59.436 52.381 0.00 3.04 45.91 5.19
4290 6110 3.115390 TCTGGACCTAATCAGGAAAGGG 58.885 50.000 0.00 0.00 45.91 3.95
4291 6111 5.379706 AATCTGGACCTAATCAGGAAAGG 57.620 43.478 0.00 0.00 45.91 3.11
4292 6112 6.405176 GCAAAATCTGGACCTAATCAGGAAAG 60.405 42.308 0.00 0.00 45.91 2.62
4293 6113 5.418840 GCAAAATCTGGACCTAATCAGGAAA 59.581 40.000 0.00 0.00 45.91 3.13
4294 6114 4.949856 GCAAAATCTGGACCTAATCAGGAA 59.050 41.667 0.00 0.00 45.91 3.36
4295 6115 4.018506 TGCAAAATCTGGACCTAATCAGGA 60.019 41.667 0.00 0.00 45.91 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.