Multiple sequence alignment - TraesCS7B01G051900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G051900 chr7B 100.000 4851 0 0 946 5796 54495881 54500731 0.000000e+00 8959
1 TraesCS7B01G051900 chr7B 100.000 727 0 0 1 727 54494936 54495662 0.000000e+00 1343
2 TraesCS7B01G051900 chr7B 96.190 210 6 1 4567 4774 54499434 54499643 5.560000e-90 342
3 TraesCS7B01G051900 chr7B 96.190 210 6 1 4499 4708 54499502 54499709 5.560000e-90 342
4 TraesCS7B01G051900 chr7B 95.833 144 4 1 4633 4774 54499434 54499577 1.260000e-56 231
5 TraesCS7B01G051900 chr7B 95.833 144 4 1 4499 4642 54499568 54499709 1.260000e-56 231
6 TraesCS7B01G051900 chr7B 96.154 78 1 1 4699 4774 54499434 54499511 6.100000e-25 126
7 TraesCS7B01G051900 chr7B 96.154 78 1 1 4499 4576 54499634 54499709 6.100000e-25 126
8 TraesCS7B01G051900 chr7D 93.695 3204 118 30 946 4095 98992814 98995987 0.000000e+00 4721
9 TraesCS7B01G051900 chr7D 94.332 494 23 3 3606 4095 99048877 99049369 0.000000e+00 752
10 TraesCS7B01G051900 chr7D 91.195 477 42 0 4100 4576 99049407 99049883 0.000000e+00 649
11 TraesCS7B01G051900 chr7D 90.335 507 17 8 237 725 98992032 98992524 2.280000e-178 636
12 TraesCS7B01G051900 chr7D 96.505 372 11 2 4100 4470 98996025 98996395 1.070000e-171 614
13 TraesCS7B01G051900 chr7D 93.731 335 17 4 4707 5038 98996542 98996875 3.120000e-137 499
14 TraesCS7B01G051900 chr7D 82.404 574 55 24 4905 5464 99180917 99181458 5.290000e-125 459
15 TraesCS7B01G051900 chr7D 94.643 224 12 0 4354 4577 98996387 98996610 1.200000e-91 348
16 TraesCS7B01G051900 chr7D 88.189 254 22 2 5466 5713 99181518 99181769 4.390000e-76 296
17 TraesCS7B01G051900 chr7D 89.655 203 21 0 4707 4909 99049816 99050018 5.760000e-65 259
18 TraesCS7B01G051900 chr7D 88.298 94 7 4 5206 5296 98996888 98996980 6.140000e-20 110
19 TraesCS7B01G051900 chr7A 95.036 1954 72 10 2162 4095 101272060 101274008 0.000000e+00 3048
20 TraesCS7B01G051900 chr7A 86.751 1268 103 40 946 2163 101270550 101271802 0.000000e+00 1351
21 TraesCS7B01G051900 chr7A 94.561 478 26 0 4100 4577 101274046 101274523 0.000000e+00 739
22 TraesCS7B01G051900 chr7A 91.667 336 23 5 4707 5038 101274455 101274789 1.470000e-125 460
23 TraesCS7B01G051900 chr7A 86.797 409 20 15 237 633 101269748 101270134 5.370000e-115 425
24 TraesCS7B01G051900 chr7A 94.904 157 7 1 5641 5796 101275372 101275528 1.610000e-60 244
25 TraesCS7B01G051900 chr7A 76.838 272 38 9 5196 5464 101274786 101275035 4.710000e-26 130
26 TraesCS7B01G051900 chr1B 85.714 147 18 3 1 145 587139182 587139327 1.010000e-32 152
27 TraesCS7B01G051900 chr2D 83.439 157 22 4 1 155 462477173 462477019 6.050000e-30 143
28 TraesCS7B01G051900 chr6B 82.581 155 20 3 1 154 661860944 661861092 4.710000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G051900 chr7B 54494936 54500731 5795 False 1462.500000 8959 97.044250 1 5796 8 chr7B.!!$F1 5795
1 TraesCS7B01G051900 chr7D 98992032 98996980 4948 False 1154.666667 4721 92.867833 237 5296 6 chr7D.!!$F1 5059
2 TraesCS7B01G051900 chr7D 99048877 99050018 1141 False 553.333333 752 91.727333 3606 4909 3 chr7D.!!$F2 1303
3 TraesCS7B01G051900 chr7D 99180917 99181769 852 False 377.500000 459 85.296500 4905 5713 2 chr7D.!!$F3 808
4 TraesCS7B01G051900 chr7A 101269748 101275528 5780 False 913.857143 3048 89.507714 237 5796 7 chr7A.!!$F1 5559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.032813 TACCTAGCTACGCCCCTGTT 60.033 55.000 0.00 0.00 0.00 3.16 F
515 535 0.039764 TTGCTTCTCCTCTCCTCCGA 59.960 55.000 0.00 0.00 0.00 4.55 F
1144 1525 0.179056 TACGCTATCTTTGCTGGGCC 60.179 55.000 0.00 0.00 0.00 5.80 F
1637 2032 0.374758 TTCATTCAGCGCGATTCAGC 59.625 50.000 12.10 0.00 0.00 4.26 F
2941 3627 1.153208 CCTGGCTCCTCATGACAGC 60.153 63.158 11.95 11.95 0.00 4.40 F
4683 5534 0.030908 GAAGATACCGAGGACGCTGG 59.969 60.000 0.00 0.00 38.29 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1411 1805 0.459237 CACAGTCCTGTCGCCTGATC 60.459 60.000 0.00 0.0 42.83 2.92 R
2172 2858 0.114364 TCCAGTGGTAGCAGGTGAGA 59.886 55.000 9.54 0.0 0.00 3.27 R
3108 3794 1.235724 CCCTTTTGAGAACGGGTCAC 58.764 55.000 0.00 0.0 39.04 3.67 R
3205 3891 0.391263 GGTCAGGGGTGTGATTCGAC 60.391 60.000 0.00 0.0 0.00 4.20 R
4598 5449 0.030908 CCAGCGTCCTCGGTATCTTC 59.969 60.000 0.00 0.0 46.12 2.87 R
5558 6495 2.915604 TCCAGAGGAAAAGAATGCTCCT 59.084 45.455 0.00 0.0 42.44 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.126863 AGACTGAAAATTACCTGATGTCCA 57.873 37.500 0.00 0.00 0.00 4.02
24 25 6.725364 AGACTGAAAATTACCTGATGTCCAT 58.275 36.000 0.00 0.00 0.00 3.41
25 26 7.861629 AGACTGAAAATTACCTGATGTCCATA 58.138 34.615 0.00 0.00 0.00 2.74
26 27 8.497745 AGACTGAAAATTACCTGATGTCCATAT 58.502 33.333 0.00 0.00 0.00 1.78
27 28 9.778741 GACTGAAAATTACCTGATGTCCATATA 57.221 33.333 0.00 0.00 0.00 0.86
28 29 9.561069 ACTGAAAATTACCTGATGTCCATATAC 57.439 33.333 0.00 0.00 0.00 1.47
29 30 9.559732 CTGAAAATTACCTGATGTCCATATACA 57.440 33.333 0.00 0.00 0.00 2.29
30 31 9.913310 TGAAAATTACCTGATGTCCATATACAA 57.087 29.630 0.00 0.00 32.02 2.41
34 35 9.561069 AATTACCTGATGTCCATATACAAGAAC 57.439 33.333 0.00 0.00 32.02 3.01
35 36 6.560003 ACCTGATGTCCATATACAAGAACA 57.440 37.500 0.00 0.00 32.02 3.18
36 37 6.349300 ACCTGATGTCCATATACAAGAACAC 58.651 40.000 0.00 0.00 32.02 3.32
37 38 5.463392 CCTGATGTCCATATACAAGAACACG 59.537 44.000 0.00 0.00 32.02 4.49
38 39 5.972935 TGATGTCCATATACAAGAACACGT 58.027 37.500 0.00 0.00 32.02 4.49
39 40 5.810074 TGATGTCCATATACAAGAACACGTG 59.190 40.000 15.48 15.48 32.02 4.49
40 41 3.930229 TGTCCATATACAAGAACACGTGC 59.070 43.478 17.22 0.00 0.00 5.34
41 42 3.308866 GTCCATATACAAGAACACGTGCC 59.691 47.826 17.22 8.03 0.00 5.01
42 43 3.196901 TCCATATACAAGAACACGTGCCT 59.803 43.478 17.22 10.49 0.00 4.75
43 44 4.403113 TCCATATACAAGAACACGTGCCTA 59.597 41.667 17.22 0.00 0.00 3.93
44 45 4.506654 CCATATACAAGAACACGTGCCTAC 59.493 45.833 17.22 4.62 0.00 3.18
45 46 3.671008 ATACAAGAACACGTGCCTACA 57.329 42.857 17.22 2.72 0.00 2.74
46 47 2.543777 ACAAGAACACGTGCCTACAT 57.456 45.000 17.22 0.00 0.00 2.29
47 48 2.143122 ACAAGAACACGTGCCTACATG 58.857 47.619 17.22 10.70 38.85 3.21
49 50 2.543777 AGAACACGTGCCTACATGTT 57.456 45.000 17.22 0.00 43.67 2.71
50 51 3.671008 AGAACACGTGCCTACATGTTA 57.329 42.857 17.22 0.00 43.67 2.41
51 52 3.997762 AGAACACGTGCCTACATGTTAA 58.002 40.909 17.22 0.00 43.67 2.01
52 53 4.382291 AGAACACGTGCCTACATGTTAAA 58.618 39.130 17.22 0.00 43.67 1.52
53 54 4.212636 AGAACACGTGCCTACATGTTAAAC 59.787 41.667 17.22 0.00 43.67 2.01
54 55 3.468770 ACACGTGCCTACATGTTAAACA 58.531 40.909 17.22 0.00 43.67 2.83
55 56 3.878103 ACACGTGCCTACATGTTAAACAA 59.122 39.130 17.22 0.00 43.67 2.83
56 57 4.517453 ACACGTGCCTACATGTTAAACAAT 59.483 37.500 17.22 0.00 43.67 2.71
57 58 5.009210 ACACGTGCCTACATGTTAAACAATT 59.991 36.000 17.22 0.00 43.67 2.32
58 59 5.567534 CACGTGCCTACATGTTAAACAATTC 59.432 40.000 2.30 0.00 43.67 2.17
59 60 5.239744 ACGTGCCTACATGTTAAACAATTCA 59.760 36.000 2.30 0.00 43.67 2.57
60 61 6.146216 CGTGCCTACATGTTAAACAATTCAA 58.854 36.000 2.30 0.00 0.00 2.69
61 62 6.087555 CGTGCCTACATGTTAAACAATTCAAC 59.912 38.462 2.30 0.00 0.00 3.18
62 63 6.087555 GTGCCTACATGTTAAACAATTCAACG 59.912 38.462 2.30 0.00 0.00 4.10
63 64 6.017026 TGCCTACATGTTAAACAATTCAACGA 60.017 34.615 2.30 0.00 0.00 3.85
64 65 6.304683 GCCTACATGTTAAACAATTCAACGAC 59.695 38.462 2.30 0.00 0.00 4.34
65 66 6.799925 CCTACATGTTAAACAATTCAACGACC 59.200 38.462 2.30 0.00 0.00 4.79
66 67 5.525199 ACATGTTAAACAATTCAACGACCC 58.475 37.500 0.00 0.00 0.00 4.46
67 68 5.067936 ACATGTTAAACAATTCAACGACCCA 59.932 36.000 0.00 0.00 0.00 4.51
68 69 4.922719 TGTTAAACAATTCAACGACCCAC 58.077 39.130 0.00 0.00 0.00 4.61
69 70 4.398358 TGTTAAACAATTCAACGACCCACA 59.602 37.500 0.00 0.00 0.00 4.17
70 71 3.430333 AAACAATTCAACGACCCACAC 57.570 42.857 0.00 0.00 0.00 3.82
71 72 2.045561 ACAATTCAACGACCCACACA 57.954 45.000 0.00 0.00 0.00 3.72
72 73 1.673920 ACAATTCAACGACCCACACAC 59.326 47.619 0.00 0.00 0.00 3.82
73 74 1.946768 CAATTCAACGACCCACACACT 59.053 47.619 0.00 0.00 0.00 3.55
74 75 3.135225 CAATTCAACGACCCACACACTA 58.865 45.455 0.00 0.00 0.00 2.74
75 76 2.983907 TTCAACGACCCACACACTAA 57.016 45.000 0.00 0.00 0.00 2.24
76 77 2.983907 TCAACGACCCACACACTAAA 57.016 45.000 0.00 0.00 0.00 1.85
77 78 3.478857 TCAACGACCCACACACTAAAT 57.521 42.857 0.00 0.00 0.00 1.40
78 79 3.811083 TCAACGACCCACACACTAAATT 58.189 40.909 0.00 0.00 0.00 1.82
79 80 4.958509 TCAACGACCCACACACTAAATTA 58.041 39.130 0.00 0.00 0.00 1.40
80 81 5.366460 TCAACGACCCACACACTAAATTAA 58.634 37.500 0.00 0.00 0.00 1.40
81 82 5.998981 TCAACGACCCACACACTAAATTAAT 59.001 36.000 0.00 0.00 0.00 1.40
82 83 5.873179 ACGACCCACACACTAAATTAATG 57.127 39.130 0.00 0.00 0.00 1.90
83 84 5.310451 ACGACCCACACACTAAATTAATGT 58.690 37.500 0.00 0.00 0.00 2.71
84 85 6.465948 ACGACCCACACACTAAATTAATGTA 58.534 36.000 0.00 0.00 0.00 2.29
85 86 6.369615 ACGACCCACACACTAAATTAATGTAC 59.630 38.462 0.00 0.00 0.00 2.90
86 87 6.183360 CGACCCACACACTAAATTAATGTACC 60.183 42.308 0.00 0.00 0.00 3.34
87 88 6.544650 ACCCACACACTAAATTAATGTACCA 58.455 36.000 0.00 0.00 0.00 3.25
88 89 6.431852 ACCCACACACTAAATTAATGTACCAC 59.568 38.462 0.00 0.00 0.00 4.16
89 90 6.431543 CCCACACACTAAATTAATGTACCACA 59.568 38.462 0.00 0.00 0.00 4.17
90 91 7.122055 CCCACACACTAAATTAATGTACCACAT 59.878 37.037 0.00 0.00 41.31 3.21
101 102 4.701956 ATGTACCACATTAAGCAAGTGC 57.298 40.909 0.00 0.00 34.67 4.40
102 103 3.481453 TGTACCACATTAAGCAAGTGCA 58.519 40.909 6.00 0.00 45.16 4.57
103 104 3.885901 TGTACCACATTAAGCAAGTGCAA 59.114 39.130 6.00 0.00 45.16 4.08
104 105 4.339530 TGTACCACATTAAGCAAGTGCAAA 59.660 37.500 6.00 0.00 45.16 3.68
105 106 4.605640 ACCACATTAAGCAAGTGCAAAT 57.394 36.364 6.00 2.35 45.16 2.32
106 107 4.959723 ACCACATTAAGCAAGTGCAAATT 58.040 34.783 6.00 0.00 45.16 1.82
107 108 4.751098 ACCACATTAAGCAAGTGCAAATTG 59.249 37.500 6.00 8.25 46.16 2.32
108 109 4.989797 CCACATTAAGCAAGTGCAAATTGA 59.010 37.500 15.25 0.00 46.37 2.57
109 110 5.466058 CCACATTAAGCAAGTGCAAATTGAA 59.534 36.000 15.25 3.36 46.37 2.69
110 111 6.357198 CACATTAAGCAAGTGCAAATTGAAC 58.643 36.000 15.25 0.00 46.37 3.18
111 112 5.466393 ACATTAAGCAAGTGCAAATTGAACC 59.534 36.000 15.25 0.40 46.37 3.62
112 113 2.531522 AGCAAGTGCAAATTGAACCC 57.468 45.000 15.25 0.10 46.37 4.11
113 114 1.139163 GCAAGTGCAAATTGAACCCG 58.861 50.000 15.25 0.00 46.37 5.28
114 115 1.782044 CAAGTGCAAATTGAACCCGG 58.218 50.000 0.00 0.00 46.37 5.73
115 116 1.068434 CAAGTGCAAATTGAACCCGGT 59.932 47.619 0.00 0.00 46.37 5.28
116 117 0.673437 AGTGCAAATTGAACCCGGTG 59.327 50.000 0.00 0.00 0.00 4.94
117 118 0.943835 GTGCAAATTGAACCCGGTGC 60.944 55.000 0.00 0.83 0.00 5.01
118 119 1.365633 GCAAATTGAACCCGGTGCA 59.634 52.632 0.00 0.00 32.29 4.57
119 120 0.037419 GCAAATTGAACCCGGTGCAT 60.037 50.000 0.00 0.00 32.29 3.96
120 121 1.607767 GCAAATTGAACCCGGTGCATT 60.608 47.619 0.00 0.00 32.29 3.56
121 122 2.067766 CAAATTGAACCCGGTGCATTG 58.932 47.619 0.00 0.00 0.00 2.82
122 123 0.607620 AATTGAACCCGGTGCATTGG 59.392 50.000 0.00 0.00 0.00 3.16
123 124 1.887344 ATTGAACCCGGTGCATTGGC 61.887 55.000 0.00 0.00 41.68 4.52
133 134 3.102097 GCATTGGCACCGAGTAGC 58.898 61.111 0.00 0.00 40.72 3.58
134 135 1.450312 GCATTGGCACCGAGTAGCT 60.450 57.895 0.00 0.00 40.72 3.32
135 136 1.432270 GCATTGGCACCGAGTAGCTC 61.432 60.000 0.00 0.00 40.72 4.09
136 137 0.176680 CATTGGCACCGAGTAGCTCT 59.823 55.000 0.00 0.00 0.00 4.09
137 138 1.409064 CATTGGCACCGAGTAGCTCTA 59.591 52.381 0.00 0.00 0.00 2.43
138 139 0.815734 TTGGCACCGAGTAGCTCTAC 59.184 55.000 0.00 0.00 36.35 2.59
139 140 1.035932 TGGCACCGAGTAGCTCTACC 61.036 60.000 0.00 0.00 36.75 3.18
140 141 0.752376 GGCACCGAGTAGCTCTACCT 60.752 60.000 0.00 0.00 36.75 3.08
141 142 1.476471 GGCACCGAGTAGCTCTACCTA 60.476 57.143 0.00 0.00 36.75 3.08
142 143 1.874872 GCACCGAGTAGCTCTACCTAG 59.125 57.143 0.00 0.00 36.75 3.02
143 144 1.874872 CACCGAGTAGCTCTACCTAGC 59.125 57.143 0.00 0.00 43.11 3.42
150 151 1.958323 GCTCTACCTAGCTACGCCC 59.042 63.158 0.00 0.00 39.50 6.13
151 152 1.525718 GCTCTACCTAGCTACGCCCC 61.526 65.000 0.00 0.00 39.50 5.80
152 153 0.110869 CTCTACCTAGCTACGCCCCT 59.889 60.000 0.00 0.00 0.00 4.79
153 154 0.178998 TCTACCTAGCTACGCCCCTG 60.179 60.000 0.00 0.00 0.00 4.45
154 155 0.467659 CTACCTAGCTACGCCCCTGT 60.468 60.000 0.00 0.00 0.00 4.00
155 156 0.032813 TACCTAGCTACGCCCCTGTT 60.033 55.000 0.00 0.00 0.00 3.16
156 157 0.908180 ACCTAGCTACGCCCCTGTTT 60.908 55.000 0.00 0.00 0.00 2.83
157 158 1.117150 CCTAGCTACGCCCCTGTTTA 58.883 55.000 0.00 0.00 0.00 2.01
158 159 1.202498 CCTAGCTACGCCCCTGTTTAC 60.202 57.143 0.00 0.00 0.00 2.01
159 160 1.479323 CTAGCTACGCCCCTGTTTACA 59.521 52.381 0.00 0.00 0.00 2.41
160 161 0.688487 AGCTACGCCCCTGTTTACAA 59.312 50.000 0.00 0.00 0.00 2.41
161 162 1.084289 GCTACGCCCCTGTTTACAAG 58.916 55.000 0.00 0.00 0.00 3.16
162 163 1.084289 CTACGCCCCTGTTTACAAGC 58.916 55.000 0.00 0.00 0.00 4.01
163 164 0.688487 TACGCCCCTGTTTACAAGCT 59.312 50.000 0.00 0.00 0.00 3.74
164 165 0.605589 ACGCCCCTGTTTACAAGCTC 60.606 55.000 0.00 0.00 0.00 4.09
165 166 1.635663 CGCCCCTGTTTACAAGCTCG 61.636 60.000 0.00 0.00 0.00 5.03
166 167 1.923227 GCCCCTGTTTACAAGCTCGC 61.923 60.000 0.00 0.00 0.00 5.03
167 168 0.605319 CCCCTGTTTACAAGCTCGCA 60.605 55.000 0.00 0.00 0.00 5.10
168 169 1.234821 CCCTGTTTACAAGCTCGCAA 58.765 50.000 0.00 0.00 0.00 4.85
169 170 1.606668 CCCTGTTTACAAGCTCGCAAA 59.393 47.619 0.00 0.00 0.00 3.68
170 171 2.228822 CCCTGTTTACAAGCTCGCAAAT 59.771 45.455 0.00 0.00 0.00 2.32
171 172 3.236816 CCTGTTTACAAGCTCGCAAATG 58.763 45.455 0.00 0.00 0.00 2.32
172 173 2.658325 CTGTTTACAAGCTCGCAAATGC 59.342 45.455 0.00 0.00 37.78 3.56
188 189 6.494893 GCAAATGCGTCTTATATTATGGGA 57.505 37.500 0.00 0.00 0.00 4.37
189 190 6.314784 GCAAATGCGTCTTATATTATGGGAC 58.685 40.000 0.00 0.00 0.00 4.46
203 204 2.634639 TGGGACAAAGGGCTACTAGA 57.365 50.000 0.00 0.00 31.92 2.43
204 205 2.185387 TGGGACAAAGGGCTACTAGAC 58.815 52.381 0.00 0.00 31.92 2.59
205 206 2.225547 TGGGACAAAGGGCTACTAGACT 60.226 50.000 0.00 0.00 31.92 3.24
206 207 2.431419 GGGACAAAGGGCTACTAGACTC 59.569 54.545 0.00 0.00 0.00 3.36
207 208 2.431419 GGACAAAGGGCTACTAGACTCC 59.569 54.545 0.00 0.00 0.00 3.85
208 209 3.097614 GACAAAGGGCTACTAGACTCCA 58.902 50.000 0.00 0.00 0.00 3.86
209 210 2.832733 ACAAAGGGCTACTAGACTCCAC 59.167 50.000 0.00 0.00 0.00 4.02
210 211 2.162264 AAGGGCTACTAGACTCCACC 57.838 55.000 0.00 0.00 0.00 4.61
211 212 1.310877 AGGGCTACTAGACTCCACCT 58.689 55.000 0.00 0.00 0.00 4.00
212 213 1.215924 AGGGCTACTAGACTCCACCTC 59.784 57.143 0.00 0.00 0.00 3.85
213 214 1.694844 GGCTACTAGACTCCACCTCC 58.305 60.000 0.00 0.00 0.00 4.30
214 215 1.063867 GGCTACTAGACTCCACCTCCA 60.064 57.143 0.00 0.00 0.00 3.86
215 216 2.623502 GGCTACTAGACTCCACCTCCAA 60.624 54.545 0.00 0.00 0.00 3.53
216 217 3.097614 GCTACTAGACTCCACCTCCAAA 58.902 50.000 0.00 0.00 0.00 3.28
217 218 3.119065 GCTACTAGACTCCACCTCCAAAC 60.119 52.174 0.00 0.00 0.00 2.93
218 219 2.258109 ACTAGACTCCACCTCCAAACC 58.742 52.381 0.00 0.00 0.00 3.27
219 220 1.555533 CTAGACTCCACCTCCAAACCC 59.444 57.143 0.00 0.00 0.00 4.11
220 221 1.134438 AGACTCCACCTCCAAACCCC 61.134 60.000 0.00 0.00 0.00 4.95
221 222 2.138453 GACTCCACCTCCAAACCCCC 62.138 65.000 0.00 0.00 0.00 5.40
266 267 0.882927 CCAAAAAGAGCCACCGACGA 60.883 55.000 0.00 0.00 0.00 4.20
268 269 0.106149 AAAAAGAGCCACCGACGACT 59.894 50.000 0.00 0.00 0.00 4.18
271 272 1.461091 AAGAGCCACCGACGACTGAA 61.461 55.000 0.00 0.00 0.00 3.02
272 273 1.215647 GAGCCACCGACGACTGAAT 59.784 57.895 0.00 0.00 0.00 2.57
280 281 2.069273 CCGACGACTGAATGAAAAGCT 58.931 47.619 0.00 0.00 0.00 3.74
353 354 3.181503 CCATGATGAAAGCACGAGGAAAG 60.182 47.826 0.00 0.00 30.93 2.62
355 356 2.038426 TGATGAAAGCACGAGGAAAGGA 59.962 45.455 0.00 0.00 0.00 3.36
477 485 1.533731 CGCCACGACCTGTTAAACAAT 59.466 47.619 0.00 0.00 0.00 2.71
511 531 3.515562 TCTTCTTTGCTTCTCCTCTCCT 58.484 45.455 0.00 0.00 0.00 3.69
512 532 3.513515 TCTTCTTTGCTTCTCCTCTCCTC 59.486 47.826 0.00 0.00 0.00 3.71
513 533 2.183679 TCTTTGCTTCTCCTCTCCTCC 58.816 52.381 0.00 0.00 0.00 4.30
514 534 0.898320 TTTGCTTCTCCTCTCCTCCG 59.102 55.000 0.00 0.00 0.00 4.63
515 535 0.039764 TTGCTTCTCCTCTCCTCCGA 59.960 55.000 0.00 0.00 0.00 4.55
516 536 0.395036 TGCTTCTCCTCTCCTCCGAG 60.395 60.000 0.00 0.00 37.48 4.63
563 583 0.960861 GCGGAAGGAAAAGACCCAGG 60.961 60.000 0.00 0.00 0.00 4.45
565 585 0.960861 GGAAGGAAAAGACCCAGGCG 60.961 60.000 0.00 0.00 0.00 5.52
686 714 3.009714 GTCTCCTCCACCCCACCC 61.010 72.222 0.00 0.00 0.00 4.61
687 715 4.348495 TCTCCTCCACCCCACCCC 62.348 72.222 0.00 0.00 0.00 4.95
688 716 4.675303 CTCCTCCACCCCACCCCA 62.675 72.222 0.00 0.00 0.00 4.96
689 717 4.995058 TCCTCCACCCCACCCCAC 62.995 72.222 0.00 0.00 0.00 4.61
1106 1484 1.076339 TCGCCCAATCCCCCATTTC 60.076 57.895 0.00 0.00 0.00 2.17
1107 1485 1.381056 CGCCCAATCCCCCATTTCA 60.381 57.895 0.00 0.00 0.00 2.69
1109 1487 1.510492 GCCCAATCCCCCATTTCATT 58.490 50.000 0.00 0.00 0.00 2.57
1111 1489 1.141455 CCCAATCCCCCATTTCATTGC 59.859 52.381 0.00 0.00 0.00 3.56
1112 1490 1.202557 CCAATCCCCCATTTCATTGCG 60.203 52.381 0.00 0.00 0.00 4.85
1113 1491 1.755959 CAATCCCCCATTTCATTGCGA 59.244 47.619 0.00 0.00 0.00 5.10
1114 1492 2.366266 CAATCCCCCATTTCATTGCGAT 59.634 45.455 0.00 0.00 0.00 4.58
1115 1493 2.157640 TCCCCCATTTCATTGCGATT 57.842 45.000 0.00 0.00 0.00 3.34
1135 1516 6.145696 GCGATTCCTGTTTATTACGCTATCTT 59.854 38.462 0.00 0.00 41.25 2.40
1137 1518 8.004344 CGATTCCTGTTTATTACGCTATCTTTG 58.996 37.037 0.00 0.00 0.00 2.77
1138 1519 6.598753 TCCTGTTTATTACGCTATCTTTGC 57.401 37.500 0.00 0.00 0.00 3.68
1140 1521 6.257849 TCCTGTTTATTACGCTATCTTTGCTG 59.742 38.462 0.00 0.00 0.00 4.41
1141 1522 6.358118 TGTTTATTACGCTATCTTTGCTGG 57.642 37.500 0.00 0.00 0.00 4.85
1142 1523 5.295787 TGTTTATTACGCTATCTTTGCTGGG 59.704 40.000 0.00 0.00 0.00 4.45
1144 1525 0.179056 TACGCTATCTTTGCTGGGCC 60.179 55.000 0.00 0.00 0.00 5.80
1145 1526 2.189499 CGCTATCTTTGCTGGGCCC 61.189 63.158 17.59 17.59 0.00 5.80
1146 1527 1.228510 GCTATCTTTGCTGGGCCCT 59.771 57.895 25.70 1.38 0.00 5.19
1148 1529 0.466922 CTATCTTTGCTGGGCCCTGG 60.467 60.000 28.23 19.17 0.00 4.45
1149 1530 1.936767 TATCTTTGCTGGGCCCTGGG 61.937 60.000 28.23 16.73 0.00 4.45
1159 1540 2.044946 GCCCTGGGCGAAATCTGT 60.045 61.111 24.16 0.00 39.62 3.41
1160 1541 2.115291 GCCCTGGGCGAAATCTGTC 61.115 63.158 24.16 0.00 39.62 3.51
1161 1542 1.452108 CCCTGGGCGAAATCTGTCC 60.452 63.158 0.00 0.00 0.00 4.02
1162 1543 1.452108 CCTGGGCGAAATCTGTCCC 60.452 63.158 0.00 0.00 39.22 4.46
1164 1545 1.915078 CTGGGCGAAATCTGTCCCCT 61.915 60.000 0.00 0.00 37.97 4.79
1168 1549 0.678048 GCGAAATCTGTCCCCTTGCT 60.678 55.000 0.00 0.00 0.00 3.91
1171 1552 0.678048 AAATCTGTCCCCTTGCTCGC 60.678 55.000 0.00 0.00 0.00 5.03
1172 1553 1.557269 AATCTGTCCCCTTGCTCGCT 61.557 55.000 0.00 0.00 0.00 4.93
1176 1565 2.038007 TCCCCTTGCTCGCTCTCT 59.962 61.111 0.00 0.00 0.00 3.10
1179 1568 2.578128 CCTTGCTCGCTCTCTGCT 59.422 61.111 0.00 0.00 40.11 4.24
1184 1573 1.079543 GCTCGCTCTCTGCTTGGAA 60.080 57.895 0.00 0.00 40.11 3.53
1262 1652 1.715993 GGTTCTTCAGCTCGAACTCC 58.284 55.000 15.61 6.71 39.47 3.85
1263 1653 1.341606 GTTCTTCAGCTCGAACTCCG 58.658 55.000 11.05 0.00 37.22 4.63
1308 1699 4.886489 GGGATTAGTAGTACGACCTGTTCT 59.114 45.833 2.14 0.00 32.44 3.01
1309 1700 5.008514 GGGATTAGTAGTACGACCTGTTCTC 59.991 48.000 2.14 0.00 30.13 2.87
1318 1709 4.931661 ACGACCTGTTCTCTTCTTGTTA 57.068 40.909 0.00 0.00 0.00 2.41
1327 1718 7.171678 CCTGTTCTCTTCTTGTTATTCTTTCGT 59.828 37.037 0.00 0.00 0.00 3.85
1381 1775 5.411361 CCTGTGAGAAAATTCGTATGGACAA 59.589 40.000 0.00 0.00 0.00 3.18
1384 1778 7.970384 TGTGAGAAAATTCGTATGGACAATAC 58.030 34.615 0.00 0.00 38.25 1.89
1423 1817 3.935203 AGTACAATTTGATCAGGCGACAG 59.065 43.478 2.79 0.00 0.00 3.51
1545 1940 4.640789 TTGCGTTTTTGACCATAACAGT 57.359 36.364 0.00 0.00 0.00 3.55
1591 1986 3.138468 AGTTGGTTATCCCTTATCAGGCC 59.862 47.826 0.00 0.00 39.20 5.19
1592 1987 2.062636 TGGTTATCCCTTATCAGGCCC 58.937 52.381 0.00 0.00 39.20 5.80
1635 2030 1.128507 GTGTTCATTCAGCGCGATTCA 59.871 47.619 12.10 0.00 0.00 2.57
1637 2032 0.374758 TTCATTCAGCGCGATTCAGC 59.625 50.000 12.10 0.00 0.00 4.26
1639 2034 1.450134 ATTCAGCGCGATTCAGCCA 60.450 52.632 12.10 0.00 0.00 4.75
1643 2038 2.176273 AGCGCGATTCAGCCACATC 61.176 57.895 12.10 0.00 0.00 3.06
1725 2120 5.268544 CACGAACATGAATTCCTATGCTTG 58.731 41.667 0.00 0.00 0.00 4.01
1785 2180 2.171237 TCGATGGCTCAAATCAGGTCAT 59.829 45.455 0.00 0.00 0.00 3.06
1786 2181 2.289820 CGATGGCTCAAATCAGGTCATG 59.710 50.000 0.00 0.00 0.00 3.07
1796 2191 5.302568 TCAAATCAGGTCATGTTTCAAAGCT 59.697 36.000 0.00 0.00 0.00 3.74
2586 3272 4.383118 GCTCTCATTAAGCCAGGACAACTA 60.383 45.833 0.00 0.00 33.53 2.24
2941 3627 1.153208 CCTGGCTCCTCATGACAGC 60.153 63.158 11.95 11.95 0.00 4.40
3096 3782 8.433421 AATGTAGGGTTATAAGTTGAACATCG 57.567 34.615 0.00 0.00 0.00 3.84
3205 3891 6.145535 GCTGACCTCATAAACTTCAAAACAG 58.854 40.000 0.00 0.00 0.00 3.16
3302 3988 4.263331 CCTTTTCTAGTTCTTACCCAGCCA 60.263 45.833 0.00 0.00 0.00 4.75
3384 4070 8.746052 TTATCGAATTTATCTGGTTTGGACAT 57.254 30.769 0.00 0.00 0.00 3.06
3438 4134 6.398234 TGAAGAGAGTATTGGATGTAGAGC 57.602 41.667 0.00 0.00 0.00 4.09
3734 4444 0.392706 AGACGTTGTCATGGAGTGCA 59.607 50.000 0.00 0.00 34.60 4.57
3803 4513 3.073144 TGTTTAGCACGGCTTTTGTTC 57.927 42.857 3.71 0.00 40.44 3.18
3833 4543 5.578005 TCTTCTGTTACTTGATAGGGACG 57.422 43.478 0.00 0.00 0.00 4.79
4095 4805 4.792068 TCAGAACAGAAGGGTTTGAACAT 58.208 39.130 0.00 0.00 0.00 2.71
4097 4807 4.580167 CAGAACAGAAGGGTTTGAACATCA 59.420 41.667 0.00 0.00 0.00 3.07
4098 4808 4.823989 AGAACAGAAGGGTTTGAACATCAG 59.176 41.667 0.00 0.00 0.00 2.90
4108 4851 5.922544 GGGTTTGAACATCAGAACAGAAATG 59.077 40.000 0.00 0.00 0.00 2.32
4244 4987 3.057245 CACTCAAGATCGTGAACTCTCCA 60.057 47.826 12.50 0.00 33.04 3.86
4267 5010 0.773644 ATGCACCAAAGTCTGAGGGT 59.226 50.000 0.00 0.00 0.00 4.34
4306 5049 3.982475 TGATACATCATCCTCGCAAGAC 58.018 45.455 0.00 0.00 43.64 3.01
4348 5091 3.186119 CTCTCAAGAAGATGAACTCGCC 58.814 50.000 0.00 0.00 32.19 5.54
4483 5334 4.491234 ACGTTCTGACACTAACTCAGAG 57.509 45.455 0.00 0.00 43.92 3.35
4499 5350 3.038280 TCAGAGTCAGGTTCACCTTCAA 58.962 45.455 0.00 0.00 46.09 2.69
4504 5355 1.768275 TCAGGTTCACCTTCAAGCAGA 59.232 47.619 0.00 0.00 46.09 4.26
4507 5358 1.544314 GGTTCACCTTCAAGCAGAGCT 60.544 52.381 0.00 0.00 42.56 4.09
4528 5379 1.000506 TCGTCTAGCTCGCCAAAGTTT 59.999 47.619 0.00 0.00 0.00 2.66
4546 5397 3.119566 AGTTTGACGAAGATACCGAGGAC 60.120 47.826 0.00 0.00 0.00 3.85
4552 5403 0.395311 AAGATACCGAGGACGCTGGA 60.395 55.000 0.00 0.00 38.29 3.86
4553 5404 0.395311 AGATACCGAGGACGCTGGAA 60.395 55.000 0.00 0.00 38.29 3.53
4554 5405 0.248949 GATACCGAGGACGCTGGAAC 60.249 60.000 0.00 0.00 38.29 3.62
4555 5406 0.968901 ATACCGAGGACGCTGGAACA 60.969 55.000 0.00 0.00 38.29 3.18
4567 5418 4.344865 GGAACAGCTGGGGCCGAA 62.345 66.667 19.93 0.00 39.73 4.30
4568 5419 2.747855 GAACAGCTGGGGCCGAAG 60.748 66.667 19.93 0.00 39.73 3.79
4577 5428 4.681978 GGGCCGAAGCACAGTCGT 62.682 66.667 0.00 0.00 44.19 4.34
4578 5429 3.112709 GGCCGAAGCACAGTCGTC 61.113 66.667 0.00 0.00 42.56 4.20
4579 5430 2.049063 GCCGAAGCACAGTCGTCT 60.049 61.111 0.00 0.00 39.53 4.18
4580 5431 1.211969 GCCGAAGCACAGTCGTCTA 59.788 57.895 0.00 0.00 39.53 2.59
4581 5432 0.798771 GCCGAAGCACAGTCGTCTAG 60.799 60.000 0.00 0.00 39.53 2.43
4582 5433 0.798771 CCGAAGCACAGTCGTCTAGC 60.799 60.000 0.00 0.00 36.77 3.42
4583 5434 0.169230 CGAAGCACAGTCGTCTAGCT 59.831 55.000 0.00 0.00 36.33 3.32
4584 5435 1.792273 CGAAGCACAGTCGTCTAGCTC 60.792 57.143 8.70 3.78 34.62 4.09
4585 5436 0.169230 AAGCACAGTCGTCTAGCTCG 59.831 55.000 8.70 0.00 34.62 5.03
4586 5437 1.870016 GCACAGTCGTCTAGCTCGC 60.870 63.158 0.00 0.00 0.00 5.03
4587 5438 1.226435 CACAGTCGTCTAGCTCGCC 60.226 63.158 0.00 0.00 0.00 5.54
4588 5439 1.674651 ACAGTCGTCTAGCTCGCCA 60.675 57.895 0.00 0.00 0.00 5.69
4589 5440 1.241990 ACAGTCGTCTAGCTCGCCAA 61.242 55.000 0.00 0.00 0.00 4.52
4590 5441 0.109272 CAGTCGTCTAGCTCGCCAAA 60.109 55.000 0.00 0.00 0.00 3.28
4591 5442 0.171455 AGTCGTCTAGCTCGCCAAAG 59.829 55.000 0.00 0.00 0.00 2.77
4592 5443 0.109226 GTCGTCTAGCTCGCCAAAGT 60.109 55.000 0.00 0.00 0.00 2.66
4593 5444 0.601558 TCGTCTAGCTCGCCAAAGTT 59.398 50.000 0.00 0.00 0.00 2.66
4594 5445 1.000506 TCGTCTAGCTCGCCAAAGTTT 59.999 47.619 0.00 0.00 0.00 2.66
4595 5446 1.126846 CGTCTAGCTCGCCAAAGTTTG 59.873 52.381 8.73 8.73 0.00 2.93
4596 5447 2.413837 GTCTAGCTCGCCAAAGTTTGA 58.586 47.619 17.33 0.00 0.00 2.69
4597 5448 3.003480 GTCTAGCTCGCCAAAGTTTGAT 58.997 45.455 17.33 0.00 0.00 2.57
4598 5449 3.002791 TCTAGCTCGCCAAAGTTTGATG 58.997 45.455 17.33 8.71 0.00 3.07
4599 5450 1.896220 AGCTCGCCAAAGTTTGATGA 58.104 45.000 17.33 12.31 0.00 2.92
4600 5451 2.229792 AGCTCGCCAAAGTTTGATGAA 58.770 42.857 17.33 0.00 0.00 2.57
4601 5452 2.227388 AGCTCGCCAAAGTTTGATGAAG 59.773 45.455 17.33 9.40 0.00 3.02
4602 5453 2.226437 GCTCGCCAAAGTTTGATGAAGA 59.774 45.455 17.33 7.51 0.00 2.87
4603 5454 3.119708 GCTCGCCAAAGTTTGATGAAGAT 60.120 43.478 17.33 0.00 0.00 2.40
4604 5455 4.094887 GCTCGCCAAAGTTTGATGAAGATA 59.905 41.667 17.33 0.00 0.00 1.98
4605 5456 5.545658 TCGCCAAAGTTTGATGAAGATAC 57.454 39.130 17.33 0.00 0.00 2.24
4606 5457 4.394920 TCGCCAAAGTTTGATGAAGATACC 59.605 41.667 17.33 0.00 0.00 2.73
4607 5458 4.662145 GCCAAAGTTTGATGAAGATACCG 58.338 43.478 17.33 0.00 0.00 4.02
4608 5459 4.394920 GCCAAAGTTTGATGAAGATACCGA 59.605 41.667 17.33 0.00 0.00 4.69
4609 5460 5.447818 GCCAAAGTTTGATGAAGATACCGAG 60.448 44.000 17.33 0.00 0.00 4.63
4610 5461 5.065218 CCAAAGTTTGATGAAGATACCGAGG 59.935 44.000 17.33 0.00 0.00 4.63
4611 5462 5.677319 AAGTTTGATGAAGATACCGAGGA 57.323 39.130 0.00 0.00 0.00 3.71
4612 5463 5.012328 AGTTTGATGAAGATACCGAGGAC 57.988 43.478 0.00 0.00 0.00 3.85
4613 5464 3.710326 TTGATGAAGATACCGAGGACG 57.290 47.619 0.00 0.00 39.43 4.79
4614 5465 1.337071 TGATGAAGATACCGAGGACGC 59.663 52.381 0.00 0.00 38.29 5.19
4615 5466 1.609555 GATGAAGATACCGAGGACGCT 59.390 52.381 0.00 0.00 38.29 5.07
4616 5467 0.738975 TGAAGATACCGAGGACGCTG 59.261 55.000 0.00 0.00 38.29 5.18
4617 5468 0.030908 GAAGATACCGAGGACGCTGG 59.969 60.000 0.00 0.00 38.29 4.85
4618 5469 0.395311 AAGATACCGAGGACGCTGGA 60.395 55.000 0.00 0.00 38.29 3.86
4619 5470 0.395311 AGATACCGAGGACGCTGGAA 60.395 55.000 0.00 0.00 38.29 3.53
4620 5471 0.248949 GATACCGAGGACGCTGGAAC 60.249 60.000 0.00 0.00 38.29 3.62
4621 5472 0.968901 ATACCGAGGACGCTGGAACA 60.969 55.000 0.00 0.00 38.29 3.18
4633 5484 4.344865 GGAACAGCTGGGGCCGAA 62.345 66.667 19.93 0.00 39.73 4.30
4634 5485 2.747855 GAACAGCTGGGGCCGAAG 60.748 66.667 19.93 0.00 39.73 3.79
4643 5494 4.681978 GGGCCGAAGCACAGTCGT 62.682 66.667 0.00 0.00 44.19 4.34
4644 5495 3.112709 GGCCGAAGCACAGTCGTC 61.113 66.667 0.00 0.00 42.56 4.20
4645 5496 2.049063 GCCGAAGCACAGTCGTCT 60.049 61.111 0.00 0.00 39.53 4.18
4646 5497 1.211969 GCCGAAGCACAGTCGTCTA 59.788 57.895 0.00 0.00 39.53 2.59
4647 5498 0.798771 GCCGAAGCACAGTCGTCTAG 60.799 60.000 0.00 0.00 39.53 2.43
4648 5499 0.798771 CCGAAGCACAGTCGTCTAGC 60.799 60.000 0.00 0.00 36.77 3.42
4649 5500 0.169230 CGAAGCACAGTCGTCTAGCT 59.831 55.000 0.00 0.00 36.33 3.32
4650 5501 1.792273 CGAAGCACAGTCGTCTAGCTC 60.792 57.143 8.70 3.78 34.62 4.09
4651 5502 0.169230 AAGCACAGTCGTCTAGCTCG 59.831 55.000 8.70 0.00 34.62 5.03
4652 5503 1.870016 GCACAGTCGTCTAGCTCGC 60.870 63.158 0.00 0.00 0.00 5.03
4653 5504 1.226435 CACAGTCGTCTAGCTCGCC 60.226 63.158 0.00 0.00 0.00 5.54
4654 5505 1.674651 ACAGTCGTCTAGCTCGCCA 60.675 57.895 0.00 0.00 0.00 5.69
4655 5506 1.241990 ACAGTCGTCTAGCTCGCCAA 61.242 55.000 0.00 0.00 0.00 4.52
4656 5507 0.109272 CAGTCGTCTAGCTCGCCAAA 60.109 55.000 0.00 0.00 0.00 3.28
4657 5508 0.171455 AGTCGTCTAGCTCGCCAAAG 59.829 55.000 0.00 0.00 0.00 2.77
4658 5509 0.109226 GTCGTCTAGCTCGCCAAAGT 60.109 55.000 0.00 0.00 0.00 2.66
4659 5510 0.601558 TCGTCTAGCTCGCCAAAGTT 59.398 50.000 0.00 0.00 0.00 2.66
4660 5511 1.000506 TCGTCTAGCTCGCCAAAGTTT 59.999 47.619 0.00 0.00 0.00 2.66
4661 5512 1.126846 CGTCTAGCTCGCCAAAGTTTG 59.873 52.381 8.73 8.73 0.00 2.93
4662 5513 2.413837 GTCTAGCTCGCCAAAGTTTGA 58.586 47.619 17.33 0.00 0.00 2.69
4663 5514 2.157863 GTCTAGCTCGCCAAAGTTTGAC 59.842 50.000 17.33 4.34 0.00 3.18
4664 5515 1.126846 CTAGCTCGCCAAAGTTTGACG 59.873 52.381 17.01 17.01 37.90 4.35
4665 5516 0.531974 AGCTCGCCAAAGTTTGACGA 60.532 50.000 22.85 22.85 43.15 4.20
4666 5517 0.306533 GCTCGCCAAAGTTTGACGAA 59.693 50.000 24.03 11.03 44.60 3.85
4667 5518 1.660333 GCTCGCCAAAGTTTGACGAAG 60.660 52.381 24.03 18.73 44.60 3.79
4668 5519 1.864711 CTCGCCAAAGTTTGACGAAGA 59.135 47.619 24.03 6.29 44.60 2.87
4669 5520 2.480419 CTCGCCAAAGTTTGACGAAGAT 59.520 45.455 24.03 0.00 44.60 2.40
4670 5521 3.655486 TCGCCAAAGTTTGACGAAGATA 58.345 40.909 22.28 1.84 42.44 1.98
4671 5522 3.430895 TCGCCAAAGTTTGACGAAGATAC 59.569 43.478 22.28 0.00 42.44 2.24
4672 5523 3.424433 CGCCAAAGTTTGACGAAGATACC 60.424 47.826 18.09 0.00 38.91 2.73
4673 5524 3.424433 GCCAAAGTTTGACGAAGATACCG 60.424 47.826 17.33 0.00 0.00 4.02
4674 5525 3.991773 CCAAAGTTTGACGAAGATACCGA 59.008 43.478 17.33 0.00 0.00 4.69
4675 5526 4.091509 CCAAAGTTTGACGAAGATACCGAG 59.908 45.833 17.33 0.00 0.00 4.63
4676 5527 3.505464 AGTTTGACGAAGATACCGAGG 57.495 47.619 0.00 0.00 0.00 4.63
4677 5528 3.087031 AGTTTGACGAAGATACCGAGGA 58.913 45.455 0.00 0.00 0.00 3.71
4678 5529 3.119566 AGTTTGACGAAGATACCGAGGAC 60.120 47.826 0.00 0.00 0.00 3.85
4679 5530 1.012086 TGACGAAGATACCGAGGACG 58.988 55.000 0.00 0.00 39.43 4.79
4680 5531 0.316854 GACGAAGATACCGAGGACGC 60.317 60.000 0.00 0.00 38.29 5.19
4681 5532 0.747283 ACGAAGATACCGAGGACGCT 60.747 55.000 0.00 0.00 38.29 5.07
4682 5533 0.317103 CGAAGATACCGAGGACGCTG 60.317 60.000 0.00 0.00 38.29 5.18
4683 5534 0.030908 GAAGATACCGAGGACGCTGG 59.969 60.000 0.00 0.00 38.29 4.85
4684 5535 0.395311 AAGATACCGAGGACGCTGGA 60.395 55.000 0.00 0.00 38.29 3.86
4685 5536 0.395311 AGATACCGAGGACGCTGGAA 60.395 55.000 0.00 0.00 38.29 3.53
4686 5537 0.248949 GATACCGAGGACGCTGGAAC 60.249 60.000 0.00 0.00 38.29 3.62
4687 5538 0.968901 ATACCGAGGACGCTGGAACA 60.969 55.000 0.00 0.00 38.29 3.18
4699 5550 4.344865 GGAACAGCTGGGGCCGAA 62.345 66.667 19.93 0.00 39.73 4.30
4700 5551 2.747855 GAACAGCTGGGGCCGAAG 60.748 66.667 19.93 0.00 39.73 3.79
4706 5557 3.710722 CTGGGGCCGAAGCAGAGT 61.711 66.667 0.00 0.00 42.56 3.24
4707 5558 3.672295 CTGGGGCCGAAGCAGAGTC 62.672 68.421 0.00 0.00 42.56 3.36
4708 5559 4.821589 GGGGCCGAAGCAGAGTCG 62.822 72.222 0.00 0.00 42.56 4.18
4709 5560 4.070552 GGGCCGAAGCAGAGTCGT 62.071 66.667 0.00 0.00 42.56 4.34
4710 5561 2.507324 GGCCGAAGCAGAGTCGTC 60.507 66.667 0.00 0.00 42.56 4.20
4711 5562 2.569134 GCCGAAGCAGAGTCGTCT 59.431 61.111 0.00 0.00 39.53 4.18
4712 5563 1.654954 GGCCGAAGCAGAGTCGTCTA 61.655 60.000 0.00 0.00 42.56 2.59
4713 5564 0.248296 GCCGAAGCAGAGTCGTCTAG 60.248 60.000 0.00 0.00 39.53 2.43
4714 5565 0.248296 CCGAAGCAGAGTCGTCTAGC 60.248 60.000 0.00 0.00 36.77 3.42
4715 5566 0.730265 CGAAGCAGAGTCGTCTAGCT 59.270 55.000 3.82 3.82 38.22 3.32
4716 5567 1.267832 CGAAGCAGAGTCGTCTAGCTC 60.268 57.143 8.96 3.97 36.65 4.09
4717 5568 0.730265 AAGCAGAGTCGTCTAGCTCG 59.270 55.000 8.96 0.00 36.65 5.03
4718 5569 1.298041 GCAGAGTCGTCTAGCTCGC 60.298 63.158 0.00 0.00 36.88 5.03
4719 5570 1.353804 CAGAGTCGTCTAGCTCGCC 59.646 63.158 0.00 0.00 36.88 5.54
4720 5571 1.078356 AGAGTCGTCTAGCTCGCCA 60.078 57.895 0.00 0.00 36.88 5.69
4721 5572 0.677098 AGAGTCGTCTAGCTCGCCAA 60.677 55.000 0.00 0.00 36.88 4.52
4722 5573 0.170561 GAGTCGTCTAGCTCGCCAAA 59.829 55.000 0.00 0.00 0.00 3.28
4723 5574 0.171455 AGTCGTCTAGCTCGCCAAAG 59.829 55.000 0.00 0.00 0.00 2.77
4724 5575 0.109226 GTCGTCTAGCTCGCCAAAGT 60.109 55.000 0.00 0.00 0.00 2.66
4725 5576 0.601558 TCGTCTAGCTCGCCAAAGTT 59.398 50.000 0.00 0.00 0.00 2.66
4726 5577 1.000506 TCGTCTAGCTCGCCAAAGTTT 59.999 47.619 0.00 0.00 0.00 2.66
4727 5578 1.126846 CGTCTAGCTCGCCAAAGTTTG 59.873 52.381 8.73 8.73 0.00 2.93
4738 5589 3.487563 CCAAAGTTTGGCGAAGATACC 57.512 47.619 21.39 0.00 45.17 2.73
4739 5590 2.159572 CCAAAGTTTGGCGAAGATACCG 60.160 50.000 21.39 0.00 45.17 4.02
4740 5591 2.739913 CAAAGTTTGGCGAAGATACCGA 59.260 45.455 7.78 0.00 0.00 4.69
4741 5592 2.295253 AGTTTGGCGAAGATACCGAG 57.705 50.000 0.00 0.00 0.00 4.63
4742 5593 1.134788 AGTTTGGCGAAGATACCGAGG 60.135 52.381 0.00 0.00 0.00 4.63
4743 5594 1.134907 GTTTGGCGAAGATACCGAGGA 60.135 52.381 0.00 0.00 0.00 3.71
4744 5595 0.458669 TTGGCGAAGATACCGAGGAC 59.541 55.000 0.00 0.00 0.00 3.85
4745 5596 1.008767 GGCGAAGATACCGAGGACG 60.009 63.158 0.00 0.00 39.43 4.79
4746 5597 1.657794 GCGAAGATACCGAGGACGC 60.658 63.158 0.00 0.00 38.29 5.19
4747 5598 2.023318 CGAAGATACCGAGGACGCT 58.977 57.895 0.00 0.00 38.29 5.07
4748 5599 0.317103 CGAAGATACCGAGGACGCTG 60.317 60.000 0.00 0.00 38.29 5.18
4749 5600 0.030908 GAAGATACCGAGGACGCTGG 59.969 60.000 0.00 0.00 38.29 4.85
4750 5601 0.395311 AAGATACCGAGGACGCTGGA 60.395 55.000 0.00 0.00 38.29 3.86
4801 5652 6.201591 AGAACTGGAAGGATCTTGAGACTAT 58.798 40.000 0.00 0.00 39.30 2.12
4963 5814 8.968242 GGTTAAACATGTGAGAAATTTTCAGAC 58.032 33.333 11.53 7.54 0.00 3.51
4969 5820 7.232127 ACATGTGAGAAATTTTCAGACCATCTT 59.768 33.333 11.53 0.00 0.00 2.40
4970 5821 7.206981 TGTGAGAAATTTTCAGACCATCTTC 57.793 36.000 11.53 0.00 0.00 2.87
4971 5822 6.772233 TGTGAGAAATTTTCAGACCATCTTCA 59.228 34.615 11.53 0.81 0.00 3.02
4972 5823 7.040892 TGTGAGAAATTTTCAGACCATCTTCAG 60.041 37.037 11.53 0.00 0.00 3.02
4979 5833 6.579666 TTTCAGACCATCTTCAGATTTTGG 57.420 37.500 0.00 0.00 31.21 3.28
4983 5837 5.353678 CAGACCATCTTCAGATTTTGGAGTC 59.646 44.000 2.52 0.00 33.74 3.36
5120 5981 1.002900 CGCCAACTGCTTTCTTTCGAA 60.003 47.619 0.00 0.00 38.05 3.71
5121 5982 2.350772 CGCCAACTGCTTTCTTTCGAAT 60.351 45.455 0.00 0.00 38.05 3.34
5149 6010 3.555547 TGTCTGACGACATTGTGTTCTTG 59.444 43.478 2.98 0.00 44.85 3.02
5150 6011 3.555956 GTCTGACGACATTGTGTTCTTGT 59.444 43.478 0.00 0.00 39.98 3.16
5151 6012 4.034048 GTCTGACGACATTGTGTTCTTGTT 59.966 41.667 0.00 0.00 39.98 2.83
5152 6013 4.634004 TCTGACGACATTGTGTTCTTGTTT 59.366 37.500 0.00 0.00 0.00 2.83
5153 6014 4.904116 TGACGACATTGTGTTCTTGTTTC 58.096 39.130 0.00 0.00 0.00 2.78
5186 6047 4.939509 TTCGTTAGTTATGGAAAGCTGC 57.060 40.909 0.00 0.00 0.00 5.25
5189 6050 3.684788 CGTTAGTTATGGAAAGCTGCAGT 59.315 43.478 16.64 0.00 0.00 4.40
5197 6058 3.620488 TGGAAAGCTGCAGTTATTAGGG 58.380 45.455 16.64 0.00 0.00 3.53
5265 6134 8.772705 CAAAAATTGGCAACTTTTATGAGCTTA 58.227 29.630 17.73 0.00 37.61 3.09
5266 6135 8.900983 AAAATTGGCAACTTTTATGAGCTTAA 57.099 26.923 0.00 0.00 37.61 1.85
5270 6139 6.810911 TGGCAACTTTTATGAGCTTAACAAA 58.189 32.000 0.00 0.00 37.61 2.83
5273 6142 8.275632 GGCAACTTTTATGAGCTTAACAAAAAG 58.724 33.333 16.08 16.08 38.97 2.27
5285 6154 9.326339 GAGCTTAACAAAAAGAAAGTATAACCG 57.674 33.333 0.00 0.00 0.00 4.44
5296 6165 7.414222 AGAAAGTATAACCGACCAATCACTA 57.586 36.000 0.00 0.00 0.00 2.74
5297 6166 7.490000 AGAAAGTATAACCGACCAATCACTAG 58.510 38.462 0.00 0.00 0.00 2.57
5299 6168 4.647853 AGTATAACCGACCAATCACTAGCA 59.352 41.667 0.00 0.00 0.00 3.49
5302 6171 3.350219 ACCGACCAATCACTAGCAAAT 57.650 42.857 0.00 0.00 0.00 2.32
5304 6173 5.036117 ACCGACCAATCACTAGCAAATAT 57.964 39.130 0.00 0.00 0.00 1.28
5306 6175 5.885912 ACCGACCAATCACTAGCAAATATTT 59.114 36.000 0.00 0.00 0.00 1.40
5307 6176 6.183360 ACCGACCAATCACTAGCAAATATTTG 60.183 38.462 21.54 21.54 41.03 2.32
5309 6178 6.907212 CGACCAATCACTAGCAAATATTTGAC 59.093 38.462 28.33 19.42 40.55 3.18
5312 6181 8.752187 ACCAATCACTAGCAAATATTTGACATT 58.248 29.630 28.33 13.93 40.55 2.71
5313 6182 9.590451 CCAATCACTAGCAAATATTTGACATTT 57.410 29.630 28.33 11.86 40.55 2.32
5350 6219 4.380531 TCGCCAATTGAGAATATCCTGAC 58.619 43.478 7.12 0.00 0.00 3.51
5353 6222 4.212214 GCCAATTGAGAATATCCTGACGTC 59.788 45.833 9.11 9.11 0.00 4.34
5378 6248 3.236816 CAAGAAATGGTTAAGCGCAGTG 58.763 45.455 11.47 0.00 0.00 3.66
5392 6262 2.224606 CGCAGTGGGAAAGATGCATAT 58.775 47.619 0.00 0.00 38.60 1.78
5402 6272 5.539955 GGGAAAGATGCATATGGTGGTAAAT 59.460 40.000 0.00 0.00 0.00 1.40
5403 6273 6.719370 GGGAAAGATGCATATGGTGGTAAATA 59.281 38.462 0.00 0.00 0.00 1.40
5414 6284 4.337145 TGGTGGTAAATAATTTCGCCAGT 58.663 39.130 0.00 0.00 33.67 4.00
5416 6286 5.587043 TGGTGGTAAATAATTTCGCCAGTAG 59.413 40.000 0.00 0.00 33.67 2.57
5421 6291 6.037830 GGTAAATAATTTCGCCAGTAGCTCAA 59.962 38.462 0.00 0.00 40.39 3.02
5423 6293 3.831715 AATTTCGCCAGTAGCTCAAAC 57.168 42.857 0.00 0.00 40.39 2.93
5429 6299 1.813513 CCAGTAGCTCAAACTGTGGG 58.186 55.000 12.89 0.00 42.30 4.61
5447 6317 1.065854 GGGCCGAAGATGGATCCATAG 60.066 57.143 27.38 17.35 36.70 2.23
5455 6325 2.302445 AGATGGATCCATAGCTCACAGC 59.698 50.000 27.38 11.35 37.96 4.40
5456 6326 2.930023 GATGGATCCATAGCTCACAGCG 60.930 54.545 27.38 0.00 40.75 5.18
5555 6492 7.120285 TGGCAAATTCAAACATTTTCAGAACAA 59.880 29.630 0.00 0.00 0.00 2.83
5556 6493 7.429051 GGCAAATTCAAACATTTTCAGAACAAC 59.571 33.333 0.00 0.00 0.00 3.32
5557 6494 7.961827 GCAAATTCAAACATTTTCAGAACAACA 59.038 29.630 0.00 0.00 0.00 3.33
5558 6495 9.823098 CAAATTCAAACATTTTCAGAACAACAA 57.177 25.926 0.00 0.00 0.00 2.83
5564 6501 4.402155 ACATTTTCAGAACAACAAGGAGCA 59.598 37.500 0.00 0.00 0.00 4.26
5708 6759 5.277490 GCAAAAGGGCAAAAGATCAAACTTC 60.277 40.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.126863 TGGACATCAGGTAATTTTCAGTCT 57.873 37.500 0.00 0.00 0.00 3.24
1 2 8.682936 ATATGGACATCAGGTAATTTTCAGTC 57.317 34.615 0.00 0.00 0.00 3.51
2 3 9.561069 GTATATGGACATCAGGTAATTTTCAGT 57.439 33.333 0.00 0.00 0.00 3.41
3 4 9.559732 TGTATATGGACATCAGGTAATTTTCAG 57.440 33.333 0.00 0.00 0.00 3.02
4 5 9.913310 TTGTATATGGACATCAGGTAATTTTCA 57.087 29.630 0.00 0.00 0.00 2.69
8 9 9.561069 GTTCTTGTATATGGACATCAGGTAATT 57.439 33.333 0.00 0.00 0.00 1.40
9 10 8.713971 TGTTCTTGTATATGGACATCAGGTAAT 58.286 33.333 0.00 0.00 0.00 1.89
10 11 7.985184 GTGTTCTTGTATATGGACATCAGGTAA 59.015 37.037 0.00 0.00 0.00 2.85
11 12 7.497595 GTGTTCTTGTATATGGACATCAGGTA 58.502 38.462 0.00 0.00 0.00 3.08
12 13 6.349300 GTGTTCTTGTATATGGACATCAGGT 58.651 40.000 0.00 0.00 0.00 4.00
13 14 5.463392 CGTGTTCTTGTATATGGACATCAGG 59.537 44.000 0.00 0.00 0.00 3.86
14 15 6.019559 CACGTGTTCTTGTATATGGACATCAG 60.020 42.308 7.58 0.00 0.00 2.90
15 16 5.810074 CACGTGTTCTTGTATATGGACATCA 59.190 40.000 7.58 0.00 0.00 3.07
16 17 5.276868 GCACGTGTTCTTGTATATGGACATC 60.277 44.000 18.38 0.00 0.00 3.06
17 18 4.570772 GCACGTGTTCTTGTATATGGACAT 59.429 41.667 18.38 0.00 0.00 3.06
18 19 3.930229 GCACGTGTTCTTGTATATGGACA 59.070 43.478 18.38 0.00 0.00 4.02
19 20 3.308866 GGCACGTGTTCTTGTATATGGAC 59.691 47.826 18.38 0.00 0.00 4.02
20 21 3.196901 AGGCACGTGTTCTTGTATATGGA 59.803 43.478 18.38 0.00 0.00 3.41
21 22 3.531538 AGGCACGTGTTCTTGTATATGG 58.468 45.455 18.38 0.00 0.00 2.74
22 23 5.106442 TGTAGGCACGTGTTCTTGTATATG 58.894 41.667 18.38 0.00 0.00 1.78
23 24 5.333299 TGTAGGCACGTGTTCTTGTATAT 57.667 39.130 18.38 0.00 0.00 0.86
24 25 4.787260 TGTAGGCACGTGTTCTTGTATA 57.213 40.909 18.38 0.00 0.00 1.47
25 26 3.671008 TGTAGGCACGTGTTCTTGTAT 57.329 42.857 18.38 0.00 0.00 2.29
26 27 3.322369 CATGTAGGCACGTGTTCTTGTA 58.678 45.455 18.38 5.89 36.98 2.41
27 28 2.143122 CATGTAGGCACGTGTTCTTGT 58.857 47.619 18.38 0.00 36.98 3.16
28 29 2.880822 CATGTAGGCACGTGTTCTTG 57.119 50.000 18.38 7.05 36.98 3.02
34 35 4.475763 TTGTTTAACATGTAGGCACGTG 57.524 40.909 12.28 12.28 45.58 4.49
35 36 5.239744 TGAATTGTTTAACATGTAGGCACGT 59.760 36.000 0.00 0.00 0.00 4.49
36 37 5.694816 TGAATTGTTTAACATGTAGGCACG 58.305 37.500 0.00 0.00 0.00 5.34
37 38 6.087555 CGTTGAATTGTTTAACATGTAGGCAC 59.912 38.462 0.00 0.00 0.00 5.01
38 39 6.017026 TCGTTGAATTGTTTAACATGTAGGCA 60.017 34.615 0.00 0.00 0.00 4.75
39 40 6.304683 GTCGTTGAATTGTTTAACATGTAGGC 59.695 38.462 0.00 0.00 0.00 3.93
40 41 6.799925 GGTCGTTGAATTGTTTAACATGTAGG 59.200 38.462 0.00 0.00 0.00 3.18
41 42 6.799925 GGGTCGTTGAATTGTTTAACATGTAG 59.200 38.462 0.00 0.00 0.00 2.74
42 43 6.262496 TGGGTCGTTGAATTGTTTAACATGTA 59.738 34.615 0.00 0.00 0.00 2.29
43 44 5.067936 TGGGTCGTTGAATTGTTTAACATGT 59.932 36.000 0.00 0.00 0.00 3.21
44 45 5.401079 GTGGGTCGTTGAATTGTTTAACATG 59.599 40.000 0.00 0.00 0.00 3.21
45 46 5.067936 TGTGGGTCGTTGAATTGTTTAACAT 59.932 36.000 0.00 0.00 0.00 2.71
46 47 4.398358 TGTGGGTCGTTGAATTGTTTAACA 59.602 37.500 0.00 0.00 0.00 2.41
47 48 4.736307 GTGTGGGTCGTTGAATTGTTTAAC 59.264 41.667 0.00 0.00 0.00 2.01
48 49 4.398358 TGTGTGGGTCGTTGAATTGTTTAA 59.602 37.500 0.00 0.00 0.00 1.52
49 50 3.945921 TGTGTGGGTCGTTGAATTGTTTA 59.054 39.130 0.00 0.00 0.00 2.01
50 51 2.755655 TGTGTGGGTCGTTGAATTGTTT 59.244 40.909 0.00 0.00 0.00 2.83
51 52 2.098443 GTGTGTGGGTCGTTGAATTGTT 59.902 45.455 0.00 0.00 0.00 2.83
52 53 1.673920 GTGTGTGGGTCGTTGAATTGT 59.326 47.619 0.00 0.00 0.00 2.71
53 54 1.946768 AGTGTGTGGGTCGTTGAATTG 59.053 47.619 0.00 0.00 0.00 2.32
54 55 2.341846 AGTGTGTGGGTCGTTGAATT 57.658 45.000 0.00 0.00 0.00 2.17
55 56 3.478857 TTAGTGTGTGGGTCGTTGAAT 57.521 42.857 0.00 0.00 0.00 2.57
56 57 2.983907 TTAGTGTGTGGGTCGTTGAA 57.016 45.000 0.00 0.00 0.00 2.69
57 58 2.983907 TTTAGTGTGTGGGTCGTTGA 57.016 45.000 0.00 0.00 0.00 3.18
58 59 5.676532 TTAATTTAGTGTGTGGGTCGTTG 57.323 39.130 0.00 0.00 0.00 4.10
59 60 5.766174 ACATTAATTTAGTGTGTGGGTCGTT 59.234 36.000 3.99 0.00 0.00 3.85
60 61 5.310451 ACATTAATTTAGTGTGTGGGTCGT 58.690 37.500 3.99 0.00 0.00 4.34
61 62 5.873179 ACATTAATTTAGTGTGTGGGTCG 57.127 39.130 3.99 0.00 0.00 4.79
62 63 6.655848 TGGTACATTAATTTAGTGTGTGGGTC 59.344 38.462 13.16 0.63 30.84 4.46
63 64 6.431852 GTGGTACATTAATTTAGTGTGTGGGT 59.568 38.462 13.16 0.00 44.52 4.51
64 65 6.431543 TGTGGTACATTAATTTAGTGTGTGGG 59.568 38.462 13.16 0.00 44.52 4.61
65 66 7.441890 TGTGGTACATTAATTTAGTGTGTGG 57.558 36.000 13.16 0.00 44.52 4.17
78 79 5.707764 TGCACTTGCTTAATGTGGTACATTA 59.292 36.000 9.63 9.63 43.26 1.90
79 80 4.522405 TGCACTTGCTTAATGTGGTACATT 59.478 37.500 11.43 11.43 45.16 2.71
80 81 4.078537 TGCACTTGCTTAATGTGGTACAT 58.921 39.130 2.33 0.00 41.34 2.29
81 82 3.481453 TGCACTTGCTTAATGTGGTACA 58.519 40.909 2.33 0.00 42.66 2.90
82 83 4.497473 TTGCACTTGCTTAATGTGGTAC 57.503 40.909 2.33 0.00 42.66 3.34
83 84 5.720371 ATTTGCACTTGCTTAATGTGGTA 57.280 34.783 2.33 0.00 42.66 3.25
84 85 4.605640 ATTTGCACTTGCTTAATGTGGT 57.394 36.364 2.33 0.00 42.66 4.16
85 86 4.989797 TCAATTTGCACTTGCTTAATGTGG 59.010 37.500 2.33 0.00 42.66 4.17
86 87 6.357198 GTTCAATTTGCACTTGCTTAATGTG 58.643 36.000 2.33 0.00 42.66 3.21
87 88 5.466393 GGTTCAATTTGCACTTGCTTAATGT 59.534 36.000 2.33 0.00 42.66 2.71
88 89 5.106987 GGGTTCAATTTGCACTTGCTTAATG 60.107 40.000 2.33 0.00 42.66 1.90
89 90 4.996758 GGGTTCAATTTGCACTTGCTTAAT 59.003 37.500 2.33 0.14 42.66 1.40
90 91 4.376146 GGGTTCAATTTGCACTTGCTTAA 58.624 39.130 2.33 0.00 42.66 1.85
91 92 3.551863 CGGGTTCAATTTGCACTTGCTTA 60.552 43.478 2.33 0.00 42.66 3.09
92 93 2.802774 CGGGTTCAATTTGCACTTGCTT 60.803 45.455 2.33 0.00 42.66 3.91
93 94 1.269726 CGGGTTCAATTTGCACTTGCT 60.270 47.619 2.33 0.00 42.66 3.91
94 95 1.139163 CGGGTTCAATTTGCACTTGC 58.861 50.000 3.77 0.00 42.50 4.01
95 96 1.068434 ACCGGGTTCAATTTGCACTTG 59.932 47.619 6.32 2.42 0.00 3.16
96 97 1.068434 CACCGGGTTCAATTTGCACTT 59.932 47.619 6.32 0.00 0.00 3.16
97 98 0.673437 CACCGGGTTCAATTTGCACT 59.327 50.000 6.32 0.00 0.00 4.40
98 99 0.943835 GCACCGGGTTCAATTTGCAC 60.944 55.000 6.32 0.00 0.00 4.57
99 100 1.365633 GCACCGGGTTCAATTTGCA 59.634 52.632 6.32 0.00 0.00 4.08
100 101 0.037419 ATGCACCGGGTTCAATTTGC 60.037 50.000 6.32 4.14 0.00 3.68
101 102 2.067766 CAATGCACCGGGTTCAATTTG 58.932 47.619 6.32 1.28 0.00 2.32
102 103 1.001860 CCAATGCACCGGGTTCAATTT 59.998 47.619 6.32 0.00 0.00 1.82
103 104 0.607620 CCAATGCACCGGGTTCAATT 59.392 50.000 6.32 0.00 0.00 2.32
104 105 1.887344 GCCAATGCACCGGGTTCAAT 61.887 55.000 6.32 0.00 37.47 2.57
105 106 2.569354 GCCAATGCACCGGGTTCAA 61.569 57.895 6.32 0.00 37.47 2.69
106 107 2.988684 GCCAATGCACCGGGTTCA 60.989 61.111 6.32 1.07 37.47 3.18
107 108 2.988684 TGCCAATGCACCGGGTTC 60.989 61.111 6.32 0.00 44.23 3.62
116 117 1.432270 GAGCTACTCGGTGCCAATGC 61.432 60.000 0.00 0.00 38.26 3.56
117 118 0.176680 AGAGCTACTCGGTGCCAATG 59.823 55.000 0.00 0.00 35.36 2.82
118 119 1.409427 GTAGAGCTACTCGGTGCCAAT 59.591 52.381 0.50 0.00 35.36 3.16
119 120 0.815734 GTAGAGCTACTCGGTGCCAA 59.184 55.000 0.50 0.00 35.36 4.52
120 121 1.035932 GGTAGAGCTACTCGGTGCCA 61.036 60.000 7.51 0.00 35.36 4.92
121 122 0.752376 AGGTAGAGCTACTCGGTGCC 60.752 60.000 7.51 0.00 35.36 5.01
122 123 1.874872 CTAGGTAGAGCTACTCGGTGC 59.125 57.143 7.51 0.00 35.36 5.01
123 124 1.874872 GCTAGGTAGAGCTACTCGGTG 59.125 57.143 7.51 0.00 39.50 4.94
124 125 2.259266 GCTAGGTAGAGCTACTCGGT 57.741 55.000 7.51 0.00 39.50 4.69
143 144 1.084289 GCTTGTAAACAGGGGCGTAG 58.916 55.000 0.00 0.00 0.00 3.51
144 145 0.688487 AGCTTGTAAACAGGGGCGTA 59.312 50.000 0.00 0.00 0.00 4.42
145 146 0.605589 GAGCTTGTAAACAGGGGCGT 60.606 55.000 0.00 0.00 0.00 5.68
146 147 1.635663 CGAGCTTGTAAACAGGGGCG 61.636 60.000 0.00 0.00 0.00 6.13
147 148 1.923227 GCGAGCTTGTAAACAGGGGC 61.923 60.000 2.14 0.00 0.00 5.80
148 149 0.605319 TGCGAGCTTGTAAACAGGGG 60.605 55.000 2.14 0.00 0.00 4.79
149 150 1.234821 TTGCGAGCTTGTAAACAGGG 58.765 50.000 1.42 0.00 0.00 4.45
150 151 3.236816 CATTTGCGAGCTTGTAAACAGG 58.763 45.455 18.18 8.40 0.00 4.00
151 152 2.658325 GCATTTGCGAGCTTGTAAACAG 59.342 45.455 18.18 14.61 0.00 3.16
152 153 2.660490 GCATTTGCGAGCTTGTAAACA 58.340 42.857 18.18 0.00 0.00 2.83
165 166 6.072728 TGTCCCATAATATAAGACGCATTTGC 60.073 38.462 0.00 0.00 37.78 3.68
166 167 7.433708 TGTCCCATAATATAAGACGCATTTG 57.566 36.000 0.00 0.00 0.00 2.32
167 168 8.458573 TTTGTCCCATAATATAAGACGCATTT 57.541 30.769 0.00 0.00 0.00 2.32
168 169 7.174946 CCTTTGTCCCATAATATAAGACGCATT 59.825 37.037 0.00 0.00 0.00 3.56
169 170 6.655003 CCTTTGTCCCATAATATAAGACGCAT 59.345 38.462 0.00 0.00 0.00 4.73
170 171 5.995282 CCTTTGTCCCATAATATAAGACGCA 59.005 40.000 0.00 0.00 0.00 5.24
171 172 5.411669 CCCTTTGTCCCATAATATAAGACGC 59.588 44.000 0.00 0.00 0.00 5.19
172 173 5.411669 GCCCTTTGTCCCATAATATAAGACG 59.588 44.000 0.00 0.00 0.00 4.18
173 174 6.543735 AGCCCTTTGTCCCATAATATAAGAC 58.456 40.000 0.00 0.00 0.00 3.01
174 175 6.780198 AGCCCTTTGTCCCATAATATAAGA 57.220 37.500 0.00 0.00 0.00 2.10
175 176 7.690256 AGTAGCCCTTTGTCCCATAATATAAG 58.310 38.462 0.00 0.00 0.00 1.73
176 177 7.642094 AGTAGCCCTTTGTCCCATAATATAA 57.358 36.000 0.00 0.00 0.00 0.98
177 178 8.181524 TCTAGTAGCCCTTTGTCCCATAATATA 58.818 37.037 0.00 0.00 0.00 0.86
178 179 7.023120 TCTAGTAGCCCTTTGTCCCATAATAT 58.977 38.462 0.00 0.00 0.00 1.28
179 180 6.269307 GTCTAGTAGCCCTTTGTCCCATAATA 59.731 42.308 0.00 0.00 0.00 0.98
180 181 5.071923 GTCTAGTAGCCCTTTGTCCCATAAT 59.928 44.000 0.00 0.00 0.00 1.28
181 182 4.407945 GTCTAGTAGCCCTTTGTCCCATAA 59.592 45.833 0.00 0.00 0.00 1.90
182 183 3.965347 GTCTAGTAGCCCTTTGTCCCATA 59.035 47.826 0.00 0.00 0.00 2.74
183 184 2.772515 GTCTAGTAGCCCTTTGTCCCAT 59.227 50.000 0.00 0.00 0.00 4.00
184 185 2.185387 GTCTAGTAGCCCTTTGTCCCA 58.815 52.381 0.00 0.00 0.00 4.37
185 186 2.431419 GAGTCTAGTAGCCCTTTGTCCC 59.569 54.545 0.00 0.00 0.00 4.46
186 187 2.431419 GGAGTCTAGTAGCCCTTTGTCC 59.569 54.545 0.00 0.00 0.00 4.02
187 188 3.097614 TGGAGTCTAGTAGCCCTTTGTC 58.902 50.000 0.00 0.00 0.00 3.18
188 189 2.832733 GTGGAGTCTAGTAGCCCTTTGT 59.167 50.000 0.00 0.00 0.00 2.83
189 190 2.168728 GGTGGAGTCTAGTAGCCCTTTG 59.831 54.545 0.00 0.00 0.00 2.77
190 191 2.044630 AGGTGGAGTCTAGTAGCCCTTT 59.955 50.000 0.00 0.00 0.00 3.11
191 192 1.646977 AGGTGGAGTCTAGTAGCCCTT 59.353 52.381 0.00 0.00 0.00 3.95
192 193 1.215924 GAGGTGGAGTCTAGTAGCCCT 59.784 57.143 0.00 0.00 0.00 5.19
193 194 1.694844 GAGGTGGAGTCTAGTAGCCC 58.305 60.000 0.00 0.00 0.00 5.19
194 195 1.063867 TGGAGGTGGAGTCTAGTAGCC 60.064 57.143 0.00 0.00 0.00 3.93
195 196 2.438800 TGGAGGTGGAGTCTAGTAGC 57.561 55.000 0.00 0.00 0.00 3.58
196 197 3.447944 GGTTTGGAGGTGGAGTCTAGTAG 59.552 52.174 0.00 0.00 0.00 2.57
197 198 3.438183 GGTTTGGAGGTGGAGTCTAGTA 58.562 50.000 0.00 0.00 0.00 1.82
198 199 2.258109 GGTTTGGAGGTGGAGTCTAGT 58.742 52.381 0.00 0.00 0.00 2.57
199 200 1.555533 GGGTTTGGAGGTGGAGTCTAG 59.444 57.143 0.00 0.00 0.00 2.43
200 201 1.652947 GGGTTTGGAGGTGGAGTCTA 58.347 55.000 0.00 0.00 0.00 2.59
201 202 1.134438 GGGGTTTGGAGGTGGAGTCT 61.134 60.000 0.00 0.00 0.00 3.24
202 203 1.379146 GGGGTTTGGAGGTGGAGTC 59.621 63.158 0.00 0.00 0.00 3.36
203 204 2.160853 GGGGGTTTGGAGGTGGAGT 61.161 63.158 0.00 0.00 0.00 3.85
204 205 2.763902 GGGGGTTTGGAGGTGGAG 59.236 66.667 0.00 0.00 0.00 3.86
229 230 6.790232 TTTTGGATGTGGAGTCTTCTTTTT 57.210 33.333 0.00 0.00 0.00 1.94
230 231 6.607198 TCTTTTTGGATGTGGAGTCTTCTTTT 59.393 34.615 0.00 0.00 0.00 2.27
231 232 6.129179 TCTTTTTGGATGTGGAGTCTTCTTT 58.871 36.000 0.00 0.00 0.00 2.52
232 233 5.694995 TCTTTTTGGATGTGGAGTCTTCTT 58.305 37.500 0.00 0.00 0.00 2.52
233 234 5.310409 TCTTTTTGGATGTGGAGTCTTCT 57.690 39.130 0.00 0.00 0.00 2.85
234 235 4.083057 GCTCTTTTTGGATGTGGAGTCTTC 60.083 45.833 0.00 0.00 0.00 2.87
235 236 3.823304 GCTCTTTTTGGATGTGGAGTCTT 59.177 43.478 0.00 0.00 0.00 3.01
266 267 5.886960 ATCGCTTTAGCTTTTCATTCAGT 57.113 34.783 0.00 0.00 39.32 3.41
268 269 5.323900 CGAATCGCTTTAGCTTTTCATTCA 58.676 37.500 0.00 0.00 39.32 2.57
460 468 8.844441 TTAAAAGAATTGTTTAACAGGTCGTG 57.156 30.769 0.37 0.00 0.00 4.35
505 525 1.853963 TTCCTTTCCTCGGAGGAGAG 58.146 55.000 28.94 28.94 46.73 3.20
506 526 2.180276 CTTTCCTTTCCTCGGAGGAGA 58.820 52.381 24.81 20.20 46.73 3.71
511 531 2.039879 CCTTTCCTTTCCTTTCCTCGGA 59.960 50.000 0.00 0.00 0.00 4.55
512 532 2.039879 TCCTTTCCTTTCCTTTCCTCGG 59.960 50.000 0.00 0.00 0.00 4.63
513 533 3.418684 TCCTTTCCTTTCCTTTCCTCG 57.581 47.619 0.00 0.00 0.00 4.63
514 534 5.362717 TGTTTTCCTTTCCTTTCCTTTCCTC 59.637 40.000 0.00 0.00 0.00 3.71
515 535 5.277250 TGTTTTCCTTTCCTTTCCTTTCCT 58.723 37.500 0.00 0.00 0.00 3.36
516 536 5.607939 TGTTTTCCTTTCCTTTCCTTTCC 57.392 39.130 0.00 0.00 0.00 3.13
517 537 7.042725 CGATTTGTTTTCCTTTCCTTTCCTTTC 60.043 37.037 0.00 0.00 0.00 2.62
518 538 6.761242 CGATTTGTTTTCCTTTCCTTTCCTTT 59.239 34.615 0.00 0.00 0.00 3.11
519 539 6.280643 CGATTTGTTTTCCTTTCCTTTCCTT 58.719 36.000 0.00 0.00 0.00 3.36
1106 1484 4.670621 GCGTAATAAACAGGAATCGCAATG 59.329 41.667 0.00 0.00 41.59 2.82
1107 1485 4.574828 AGCGTAATAAACAGGAATCGCAAT 59.425 37.500 8.73 0.00 43.82 3.56
1109 1487 3.527533 AGCGTAATAAACAGGAATCGCA 58.472 40.909 8.73 0.00 43.82 5.10
1111 1489 7.639162 AAGATAGCGTAATAAACAGGAATCG 57.361 36.000 0.00 0.00 0.00 3.34
1112 1490 7.798982 GCAAAGATAGCGTAATAAACAGGAATC 59.201 37.037 0.00 0.00 0.00 2.52
1113 1491 7.499232 AGCAAAGATAGCGTAATAAACAGGAAT 59.501 33.333 0.00 0.00 37.01 3.01
1114 1492 6.821665 AGCAAAGATAGCGTAATAAACAGGAA 59.178 34.615 0.00 0.00 37.01 3.36
1115 1493 6.257849 CAGCAAAGATAGCGTAATAAACAGGA 59.742 38.462 0.00 0.00 37.01 3.86
1142 1523 2.044946 ACAGATTTCGCCCAGGGC 60.045 61.111 22.33 22.33 46.75 5.19
1144 1525 1.452108 GGGACAGATTTCGCCCAGG 60.452 63.158 0.00 0.00 40.39 4.45
1145 1526 1.452108 GGGGACAGATTTCGCCCAG 60.452 63.158 0.00 0.00 41.71 4.45
1146 1527 2.674754 GGGGACAGATTTCGCCCA 59.325 61.111 0.00 0.00 41.71 5.36
1148 1529 1.657751 GCAAGGGGACAGATTTCGCC 61.658 60.000 0.00 0.00 46.66 5.54
1149 1530 0.678048 AGCAAGGGGACAGATTTCGC 60.678 55.000 0.00 0.00 0.00 4.70
1150 1531 1.373570 GAGCAAGGGGACAGATTTCG 58.626 55.000 0.00 0.00 0.00 3.46
1152 1533 0.678048 GCGAGCAAGGGGACAGATTT 60.678 55.000 0.00 0.00 0.00 2.17
1154 1535 1.965754 GAGCGAGCAAGGGGACAGAT 61.966 60.000 0.00 0.00 0.00 2.90
1155 1536 2.604686 AGCGAGCAAGGGGACAGA 60.605 61.111 0.00 0.00 0.00 3.41
1156 1537 2.125350 GAGCGAGCAAGGGGACAG 60.125 66.667 0.00 0.00 0.00 3.51
1157 1538 2.604686 AGAGCGAGCAAGGGGACA 60.605 61.111 0.00 0.00 0.00 4.02
1159 1540 2.038007 AGAGAGCGAGCAAGGGGA 59.962 61.111 0.00 0.00 0.00 4.81
1160 1541 2.186384 CAGAGAGCGAGCAAGGGG 59.814 66.667 0.00 0.00 0.00 4.79
1161 1542 2.511145 GCAGAGAGCGAGCAAGGG 60.511 66.667 0.00 0.00 0.00 3.95
1171 1552 2.064762 CGAACAGTTCCAAGCAGAGAG 58.935 52.381 7.76 0.00 0.00 3.20
1172 1553 1.412710 ACGAACAGTTCCAAGCAGAGA 59.587 47.619 7.76 0.00 0.00 3.10
1176 1565 1.771073 CGCACGAACAGTTCCAAGCA 61.771 55.000 7.76 0.00 0.00 3.91
1179 1568 1.484227 CGTCGCACGAACAGTTCCAA 61.484 55.000 7.76 0.00 46.05 3.53
1211 1600 3.675228 GCAACATGAGCAGGATTTTCCAG 60.675 47.826 0.00 0.00 39.61 3.86
1327 1718 8.637986 ACAACTGCAGAAGGAACATAAAAATAA 58.362 29.630 23.35 0.00 0.00 1.40
1332 1723 6.293955 GCTAACAACTGCAGAAGGAACATAAA 60.294 38.462 23.35 0.00 0.00 1.40
1381 1775 8.248904 TGTACTATAAACAATACCCCACGTAT 57.751 34.615 0.00 0.00 39.47 3.06
1384 1778 8.441312 AATTGTACTATAAACAATACCCCACG 57.559 34.615 11.55 0.00 44.66 4.94
1400 1794 5.079689 TGTCGCCTGATCAAATTGTACTA 57.920 39.130 0.00 0.00 0.00 1.82
1401 1795 3.935203 CTGTCGCCTGATCAAATTGTACT 59.065 43.478 0.00 0.00 0.00 2.73
1402 1796 3.063997 CCTGTCGCCTGATCAAATTGTAC 59.936 47.826 0.00 0.00 0.00 2.90
1405 1799 2.096496 GTCCTGTCGCCTGATCAAATTG 59.904 50.000 0.00 0.00 0.00 2.32
1411 1805 0.459237 CACAGTCCTGTCGCCTGATC 60.459 60.000 0.00 0.00 42.83 2.92
1423 1817 2.614057 CACAAGGTCTTTGACACAGTCC 59.386 50.000 1.07 0.00 39.21 3.85
1591 1986 5.287226 GCAATGCTGGAGAAAATAATGAGG 58.713 41.667 0.00 0.00 0.00 3.86
1592 1987 4.974275 CGCAATGCTGGAGAAAATAATGAG 59.026 41.667 2.94 0.00 0.00 2.90
1637 2032 3.569277 TGTTGAAATGTCACCTGATGTGG 59.431 43.478 0.00 0.00 45.48 4.17
1639 2034 4.889409 ACTTGTTGAAATGTCACCTGATGT 59.111 37.500 0.00 0.00 31.90 3.06
1643 2038 6.198966 GCTAAAACTTGTTGAAATGTCACCTG 59.801 38.462 0.00 0.00 31.90 4.00
1725 2120 1.202746 GGAGGAACATCCCATGCTCTC 60.203 57.143 0.00 0.00 37.19 3.20
1766 2161 3.285484 ACATGACCTGATTTGAGCCATC 58.715 45.455 0.00 0.00 0.00 3.51
1773 2168 5.535333 AGCTTTGAAACATGACCTGATTTG 58.465 37.500 0.00 0.00 0.00 2.32
2172 2858 0.114364 TCCAGTGGTAGCAGGTGAGA 59.886 55.000 9.54 0.00 0.00 3.27
2586 3272 4.870426 CGTGTTCTGAATGTATAAGCAGGT 59.130 41.667 0.00 0.00 0.00 4.00
2831 3517 4.979943 TGATTGCACAGTTCAAGTTCAA 57.020 36.364 0.00 0.00 0.00 2.69
2941 3627 4.637483 TGAAAAGAGAACTTTGGCACTG 57.363 40.909 0.00 0.00 44.32 3.66
3096 3782 5.476614 AGAACGGGTCACTAATGAACTAAC 58.523 41.667 0.00 0.00 42.73 2.34
3108 3794 1.235724 CCCTTTTGAGAACGGGTCAC 58.764 55.000 0.00 0.00 39.04 3.67
3205 3891 0.391263 GGTCAGGGGTGTGATTCGAC 60.391 60.000 0.00 0.00 0.00 4.20
3384 4070 5.556915 ACCTATCAACTTCAACCATTCGAA 58.443 37.500 0.00 0.00 0.00 3.71
3533 4230 6.560253 ATGCTCTTTCAAGTTTGAACGTAT 57.440 33.333 6.79 2.39 45.99 3.06
3536 4233 9.559958 AATAATATGCTCTTTCAAGTTTGAACG 57.440 29.630 6.79 5.87 45.99 3.95
3607 4313 6.753107 TCAGCAATTTAAGCTTAAGGGTAC 57.247 37.500 17.91 9.01 41.14 3.34
3610 4316 6.071952 TCAGTTCAGCAATTTAAGCTTAAGGG 60.072 38.462 17.91 12.63 41.14 3.95
3664 4374 6.438741 TCTTGATTATCTCACTGTCTTCCTGT 59.561 38.462 0.00 0.00 32.17 4.00
3734 4444 1.890552 AAGTCCTCATCCAGGCTGAT 58.109 50.000 17.94 4.81 43.08 2.90
3803 4513 8.877779 CCTATCAAGTAACAGAAGATTGTCTTG 58.122 37.037 0.00 0.00 36.73 3.02
4019 4729 2.157738 GCTTGATGGCTCAGAAGTGTT 58.842 47.619 0.00 0.00 31.68 3.32
4095 4805 3.192001 GCCATTGCTCATTTCTGTTCTGA 59.808 43.478 0.00 0.00 33.53 3.27
4097 4807 3.057033 GTGCCATTGCTCATTTCTGTTCT 60.057 43.478 0.00 0.00 38.71 3.01
4098 4808 3.248266 GTGCCATTGCTCATTTCTGTTC 58.752 45.455 0.00 0.00 38.71 3.18
4108 4851 0.242017 GTTCAGGTGTGCCATTGCTC 59.758 55.000 0.00 0.00 38.71 4.26
4244 4987 2.619849 CCTCAGACTTTGGTGCATCCAT 60.620 50.000 8.55 0.00 46.60 3.41
4260 5003 0.036952 AGCATCGTTGTCACCCTCAG 60.037 55.000 0.00 0.00 0.00 3.35
4267 5010 2.971307 TCAGCAATAGCATCGTTGTCA 58.029 42.857 0.00 0.00 45.49 3.58
4306 5049 0.107703 TTGGGCCTACAGATTCAGCG 60.108 55.000 4.53 0.00 0.00 5.18
4348 5091 2.097038 CCCTGCAGAAGCGTTCTCG 61.097 63.158 17.39 0.00 46.23 4.04
4507 5358 0.601558 ACTTTGGCGAGCTAGACGAA 59.398 50.000 12.59 2.00 0.00 3.85
4528 5379 1.012086 CGTCCTCGGTATCTTCGTCA 58.988 55.000 0.00 0.00 0.00 4.35
4557 5408 4.335647 ACTGTGCTTCGGCCCCAG 62.336 66.667 0.00 0.00 41.57 4.45
4558 5409 4.329545 GACTGTGCTTCGGCCCCA 62.330 66.667 0.00 0.00 40.91 4.96
4560 5411 4.681978 ACGACTGTGCTTCGGCCC 62.682 66.667 0.00 0.00 40.92 5.80
4561 5412 2.209064 TAGACGACTGTGCTTCGGCC 62.209 60.000 0.00 0.00 46.28 6.13
4562 5413 0.798771 CTAGACGACTGTGCTTCGGC 60.799 60.000 0.00 0.00 45.40 5.54
4563 5414 0.798771 GCTAGACGACTGTGCTTCGG 60.799 60.000 0.00 0.00 40.92 4.30
4564 5415 0.169230 AGCTAGACGACTGTGCTTCG 59.831 55.000 10.24 0.00 42.36 3.79
4565 5416 1.792273 CGAGCTAGACGACTGTGCTTC 60.792 57.143 15.20 9.61 37.38 3.86
4566 5417 0.169230 CGAGCTAGACGACTGTGCTT 59.831 55.000 15.20 3.74 37.38 3.91
4567 5418 1.797441 CGAGCTAGACGACTGTGCT 59.203 57.895 14.34 14.34 38.90 4.40
4568 5419 1.870016 GCGAGCTAGACGACTGTGC 60.870 63.158 12.59 2.29 0.00 4.57
4569 5420 1.226435 GGCGAGCTAGACGACTGTG 60.226 63.158 12.59 0.00 35.75 3.66
4570 5421 1.241990 TTGGCGAGCTAGACGACTGT 61.242 55.000 14.69 0.00 39.70 3.55
4571 5422 0.109272 TTTGGCGAGCTAGACGACTG 60.109 55.000 14.69 0.00 39.70 3.51
4572 5423 0.171455 CTTTGGCGAGCTAGACGACT 59.829 55.000 14.69 0.00 39.70 4.18
4573 5424 0.109226 ACTTTGGCGAGCTAGACGAC 60.109 55.000 12.59 10.51 39.41 4.34
4574 5425 0.601558 AACTTTGGCGAGCTAGACGA 59.398 50.000 12.59 0.00 0.00 4.20
4575 5426 1.126846 CAAACTTTGGCGAGCTAGACG 59.873 52.381 0.00 0.00 0.00 4.18
4576 5427 2.413837 TCAAACTTTGGCGAGCTAGAC 58.586 47.619 0.00 0.00 0.00 2.59
4577 5428 2.831685 TCAAACTTTGGCGAGCTAGA 57.168 45.000 0.00 0.00 0.00 2.43
4578 5429 3.002791 TCATCAAACTTTGGCGAGCTAG 58.997 45.455 1.62 0.00 0.00 3.42
4579 5430 3.052455 TCATCAAACTTTGGCGAGCTA 57.948 42.857 1.62 0.00 0.00 3.32
4580 5431 1.896220 TCATCAAACTTTGGCGAGCT 58.104 45.000 1.62 0.00 0.00 4.09
4581 5432 2.226437 TCTTCATCAAACTTTGGCGAGC 59.774 45.455 1.62 0.00 0.00 5.03
4582 5433 4.691860 ATCTTCATCAAACTTTGGCGAG 57.308 40.909 1.62 0.00 0.00 5.03
4583 5434 4.394920 GGTATCTTCATCAAACTTTGGCGA 59.605 41.667 1.62 0.00 0.00 5.54
4584 5435 4.662145 GGTATCTTCATCAAACTTTGGCG 58.338 43.478 1.62 0.00 0.00 5.69
4585 5436 4.394920 TCGGTATCTTCATCAAACTTTGGC 59.605 41.667 1.62 0.00 0.00 4.52
4586 5437 5.065218 CCTCGGTATCTTCATCAAACTTTGG 59.935 44.000 1.62 0.00 0.00 3.28
4587 5438 5.874810 TCCTCGGTATCTTCATCAAACTTTG 59.125 40.000 0.00 0.00 0.00 2.77
4588 5439 5.875359 GTCCTCGGTATCTTCATCAAACTTT 59.125 40.000 0.00 0.00 0.00 2.66
4589 5440 5.420409 GTCCTCGGTATCTTCATCAAACTT 58.580 41.667 0.00 0.00 0.00 2.66
4590 5441 4.440250 CGTCCTCGGTATCTTCATCAAACT 60.440 45.833 0.00 0.00 0.00 2.66
4591 5442 3.797256 CGTCCTCGGTATCTTCATCAAAC 59.203 47.826 0.00 0.00 0.00 2.93
4592 5443 3.737047 GCGTCCTCGGTATCTTCATCAAA 60.737 47.826 0.00 0.00 37.56 2.69
4593 5444 2.223735 GCGTCCTCGGTATCTTCATCAA 60.224 50.000 0.00 0.00 37.56 2.57
4594 5445 1.337071 GCGTCCTCGGTATCTTCATCA 59.663 52.381 0.00 0.00 37.56 3.07
4595 5446 1.609555 AGCGTCCTCGGTATCTTCATC 59.390 52.381 0.00 0.00 46.01 2.92
4596 5447 1.338337 CAGCGTCCTCGGTATCTTCAT 59.662 52.381 0.00 0.00 46.12 2.57
4597 5448 0.738975 CAGCGTCCTCGGTATCTTCA 59.261 55.000 0.00 0.00 46.12 3.02
4598 5449 0.030908 CCAGCGTCCTCGGTATCTTC 59.969 60.000 0.00 0.00 46.12 2.87
4599 5450 0.395311 TCCAGCGTCCTCGGTATCTT 60.395 55.000 0.00 0.00 46.12 2.40
4600 5451 0.395311 TTCCAGCGTCCTCGGTATCT 60.395 55.000 0.00 0.00 46.12 1.98
4601 5452 0.248949 GTTCCAGCGTCCTCGGTATC 60.249 60.000 0.00 0.00 46.12 2.24
4602 5453 0.968901 TGTTCCAGCGTCCTCGGTAT 60.969 55.000 0.00 0.00 46.12 2.73
4603 5454 1.592400 CTGTTCCAGCGTCCTCGGTA 61.592 60.000 0.00 0.00 46.12 4.02
4605 5456 2.125912 CTGTTCCAGCGTCCTCGG 60.126 66.667 0.00 0.00 37.56 4.63
4616 5467 4.344865 TTCGGCCCCAGCTGTTCC 62.345 66.667 13.81 9.34 46.23 3.62
4617 5468 2.747855 CTTCGGCCCCAGCTGTTC 60.748 66.667 13.81 0.59 46.23 3.18
4623 5474 4.335647 ACTGTGCTTCGGCCCCAG 62.336 66.667 0.00 0.00 41.57 4.45
4624 5475 4.329545 GACTGTGCTTCGGCCCCA 62.330 66.667 0.00 0.00 40.91 4.96
4626 5477 4.681978 ACGACTGTGCTTCGGCCC 62.682 66.667 0.00 0.00 40.92 5.80
4627 5478 2.209064 TAGACGACTGTGCTTCGGCC 62.209 60.000 0.00 0.00 46.28 6.13
4628 5479 0.798771 CTAGACGACTGTGCTTCGGC 60.799 60.000 0.00 0.00 45.40 5.54
4629 5480 0.798771 GCTAGACGACTGTGCTTCGG 60.799 60.000 0.00 0.00 40.92 4.30
4630 5481 0.169230 AGCTAGACGACTGTGCTTCG 59.831 55.000 10.24 0.00 42.36 3.79
4631 5482 1.792273 CGAGCTAGACGACTGTGCTTC 60.792 57.143 15.20 9.61 37.38 3.86
4632 5483 0.169230 CGAGCTAGACGACTGTGCTT 59.831 55.000 15.20 3.74 37.38 3.91
4633 5484 1.797441 CGAGCTAGACGACTGTGCT 59.203 57.895 14.34 14.34 38.90 4.40
4634 5485 1.870016 GCGAGCTAGACGACTGTGC 60.870 63.158 12.59 2.29 0.00 4.57
4635 5486 1.226435 GGCGAGCTAGACGACTGTG 60.226 63.158 12.59 0.00 35.75 3.66
4636 5487 1.241990 TTGGCGAGCTAGACGACTGT 61.242 55.000 14.69 0.00 39.70 3.55
4637 5488 0.109272 TTTGGCGAGCTAGACGACTG 60.109 55.000 14.69 0.00 39.70 3.51
4638 5489 0.171455 CTTTGGCGAGCTAGACGACT 59.829 55.000 14.69 0.00 39.70 4.18
4639 5490 0.109226 ACTTTGGCGAGCTAGACGAC 60.109 55.000 12.59 10.51 39.41 4.34
4640 5491 0.601558 AACTTTGGCGAGCTAGACGA 59.398 50.000 12.59 0.00 0.00 4.20
4641 5492 1.126846 CAAACTTTGGCGAGCTAGACG 59.873 52.381 0.00 0.00 0.00 4.18
4642 5493 2.157863 GTCAAACTTTGGCGAGCTAGAC 59.842 50.000 0.00 0.00 0.00 2.59
4643 5494 2.413837 GTCAAACTTTGGCGAGCTAGA 58.586 47.619 0.00 0.00 0.00 2.43
4644 5495 2.882742 GTCAAACTTTGGCGAGCTAG 57.117 50.000 1.62 0.00 0.00 3.42
4651 5502 3.424433 CGGTATCTTCGTCAAACTTTGGC 60.424 47.826 1.62 0.00 0.00 4.52
4652 5503 3.991773 TCGGTATCTTCGTCAAACTTTGG 59.008 43.478 1.62 0.00 0.00 3.28
4653 5504 4.091509 CCTCGGTATCTTCGTCAAACTTTG 59.908 45.833 0.00 0.00 0.00 2.77
4654 5505 4.021719 TCCTCGGTATCTTCGTCAAACTTT 60.022 41.667 0.00 0.00 0.00 2.66
4655 5506 3.508793 TCCTCGGTATCTTCGTCAAACTT 59.491 43.478 0.00 0.00 0.00 2.66
4656 5507 3.087031 TCCTCGGTATCTTCGTCAAACT 58.913 45.455 0.00 0.00 0.00 2.66
4657 5508 3.177487 GTCCTCGGTATCTTCGTCAAAC 58.823 50.000 0.00 0.00 0.00 2.93
4658 5509 2.159476 CGTCCTCGGTATCTTCGTCAAA 60.159 50.000 0.00 0.00 0.00 2.69
4659 5510 1.399440 CGTCCTCGGTATCTTCGTCAA 59.601 52.381 0.00 0.00 0.00 3.18
4660 5511 1.012086 CGTCCTCGGTATCTTCGTCA 58.988 55.000 0.00 0.00 0.00 4.35
4661 5512 0.316854 GCGTCCTCGGTATCTTCGTC 60.317 60.000 0.00 0.00 37.56 4.20
4662 5513 0.747283 AGCGTCCTCGGTATCTTCGT 60.747 55.000 0.00 0.00 46.01 3.85
4663 5514 0.317103 CAGCGTCCTCGGTATCTTCG 60.317 60.000 0.00 0.00 46.12 3.79
4664 5515 0.030908 CCAGCGTCCTCGGTATCTTC 59.969 60.000 0.00 0.00 46.12 2.87
4665 5516 0.395311 TCCAGCGTCCTCGGTATCTT 60.395 55.000 0.00 0.00 46.12 2.40
4666 5517 0.395311 TTCCAGCGTCCTCGGTATCT 60.395 55.000 0.00 0.00 46.12 1.98
4667 5518 0.248949 GTTCCAGCGTCCTCGGTATC 60.249 60.000 0.00 0.00 46.12 2.24
4668 5519 0.968901 TGTTCCAGCGTCCTCGGTAT 60.969 55.000 0.00 0.00 46.12 2.73
4669 5520 1.592400 CTGTTCCAGCGTCCTCGGTA 61.592 60.000 0.00 0.00 46.12 4.02
4671 5522 2.125912 CTGTTCCAGCGTCCTCGG 60.126 66.667 0.00 0.00 37.56 4.63
4682 5533 4.344865 TTCGGCCCCAGCTGTTCC 62.345 66.667 13.81 9.34 46.23 3.62
4683 5534 2.747855 CTTCGGCCCCAGCTGTTC 60.748 66.667 13.81 0.59 46.23 3.18
4689 5540 3.672295 GACTCTGCTTCGGCCCCAG 62.672 68.421 0.00 0.00 40.91 4.45
4690 5541 3.706373 GACTCTGCTTCGGCCCCA 61.706 66.667 0.00 0.00 40.91 4.96
4691 5542 4.821589 CGACTCTGCTTCGGCCCC 62.822 72.222 0.00 0.00 40.91 5.80
4692 5543 3.991536 GACGACTCTGCTTCGGCCC 62.992 68.421 0.00 0.00 38.67 5.80
4693 5544 1.654954 TAGACGACTCTGCTTCGGCC 61.655 60.000 0.00 0.00 46.28 6.13
4694 5545 0.248296 CTAGACGACTCTGCTTCGGC 60.248 60.000 0.00 0.00 45.40 5.54
4695 5546 0.248296 GCTAGACGACTCTGCTTCGG 60.248 60.000 0.00 0.00 40.92 4.30
4696 5547 0.730265 AGCTAGACGACTCTGCTTCG 59.270 55.000 8.86 0.00 42.36 3.79
4697 5548 1.267832 CGAGCTAGACGACTCTGCTTC 60.268 57.143 14.03 8.45 36.65 3.86
4698 5549 0.730265 CGAGCTAGACGACTCTGCTT 59.270 55.000 14.03 2.30 36.65 3.91
4699 5550 1.711060 GCGAGCTAGACGACTCTGCT 61.711 60.000 13.09 13.09 38.22 4.24
4700 5551 1.298041 GCGAGCTAGACGACTCTGC 60.298 63.158 12.59 0.00 0.00 4.26
4701 5552 1.353804 GGCGAGCTAGACGACTCTG 59.646 63.158 12.59 0.00 35.75 3.35
4702 5553 0.677098 TTGGCGAGCTAGACGACTCT 60.677 55.000 14.69 0.00 39.70 3.24
4703 5554 0.170561 TTTGGCGAGCTAGACGACTC 59.829 55.000 14.69 1.88 39.70 3.36
4704 5555 0.171455 CTTTGGCGAGCTAGACGACT 59.829 55.000 14.69 0.00 39.70 4.18
4705 5556 0.109226 ACTTTGGCGAGCTAGACGAC 60.109 55.000 12.59 10.51 39.41 4.34
4706 5557 0.601558 AACTTTGGCGAGCTAGACGA 59.398 50.000 12.59 0.00 0.00 4.20
4707 5558 1.126846 CAAACTTTGGCGAGCTAGACG 59.873 52.381 0.00 0.00 0.00 4.18
4708 5559 1.464997 CCAAACTTTGGCGAGCTAGAC 59.535 52.381 7.63 0.00 45.17 2.59
4709 5560 1.808411 CCAAACTTTGGCGAGCTAGA 58.192 50.000 7.63 0.00 45.17 2.43
4719 5570 2.739913 TCGGTATCTTCGCCAAACTTTG 59.260 45.455 0.00 0.00 0.00 2.77
4720 5571 3.000727 CTCGGTATCTTCGCCAAACTTT 58.999 45.455 0.00 0.00 0.00 2.66
4721 5572 2.618053 CTCGGTATCTTCGCCAAACTT 58.382 47.619 0.00 0.00 0.00 2.66
4722 5573 1.134788 CCTCGGTATCTTCGCCAAACT 60.135 52.381 0.00 0.00 0.00 2.66
4723 5574 1.134907 TCCTCGGTATCTTCGCCAAAC 60.135 52.381 0.00 0.00 0.00 2.93
4724 5575 1.134907 GTCCTCGGTATCTTCGCCAAA 60.135 52.381 0.00 0.00 0.00 3.28
4725 5576 0.458669 GTCCTCGGTATCTTCGCCAA 59.541 55.000 0.00 0.00 0.00 4.52
4726 5577 1.721664 CGTCCTCGGTATCTTCGCCA 61.722 60.000 0.00 0.00 0.00 5.69
4727 5578 1.008767 CGTCCTCGGTATCTTCGCC 60.009 63.158 0.00 0.00 0.00 5.54
4728 5579 1.657794 GCGTCCTCGGTATCTTCGC 60.658 63.158 0.00 0.00 37.56 4.70
4729 5580 0.317103 CAGCGTCCTCGGTATCTTCG 60.317 60.000 0.00 0.00 46.12 3.79
4730 5581 0.030908 CCAGCGTCCTCGGTATCTTC 59.969 60.000 0.00 0.00 46.12 2.87
4731 5582 0.395311 TCCAGCGTCCTCGGTATCTT 60.395 55.000 0.00 0.00 46.12 2.40
4732 5583 0.395311 TTCCAGCGTCCTCGGTATCT 60.395 55.000 0.00 0.00 46.12 1.98
4733 5584 0.248949 GTTCCAGCGTCCTCGGTATC 60.249 60.000 0.00 0.00 46.12 2.24
4734 5585 0.968901 TGTTCCAGCGTCCTCGGTAT 60.969 55.000 0.00 0.00 46.12 2.73
4735 5586 1.592400 CTGTTCCAGCGTCCTCGGTA 61.592 60.000 0.00 0.00 46.12 4.02
4737 5588 2.125912 CTGTTCCAGCGTCCTCGG 60.126 66.667 0.00 0.00 37.56 4.63
4748 5599 4.344865 TTCGGCCCCAGCTGTTCC 62.345 66.667 13.81 9.34 46.23 3.62
4749 5600 2.747855 CTTCGGCCCCAGCTGTTC 60.748 66.667 13.81 0.59 46.23 3.18
4801 5652 0.970640 TTTACAGTAGCAGCCCGTCA 59.029 50.000 0.00 0.00 0.00 4.35
4913 5764 6.474102 CCAACGTAAACTGTACAATGCTTTTT 59.526 34.615 0.00 0.00 0.00 1.94
4963 5814 4.507710 TCGACTCCAAAATCTGAAGATGG 58.492 43.478 0.00 0.00 34.49 3.51
4969 5820 1.623311 TGCCTCGACTCCAAAATCTGA 59.377 47.619 0.00 0.00 0.00 3.27
4970 5821 2.099141 TGCCTCGACTCCAAAATCTG 57.901 50.000 0.00 0.00 0.00 2.90
4971 5822 4.384056 CATATGCCTCGACTCCAAAATCT 58.616 43.478 0.00 0.00 0.00 2.40
4972 5823 3.499918 CCATATGCCTCGACTCCAAAATC 59.500 47.826 0.00 0.00 0.00 2.17
4979 5833 1.889829 AGCTACCATATGCCTCGACTC 59.110 52.381 0.00 0.00 0.00 3.36
4983 5837 0.969149 TCCAGCTACCATATGCCTCG 59.031 55.000 0.00 0.00 0.00 4.63
5168 6029 5.629079 AACTGCAGCTTTCCATAACTAAC 57.371 39.130 15.27 0.00 0.00 2.34
5169 6030 7.938140 AATAACTGCAGCTTTCCATAACTAA 57.062 32.000 15.27 0.00 0.00 2.24
5186 6047 7.483307 CATCAAACCAATCACCCTAATAACTG 58.517 38.462 0.00 0.00 0.00 3.16
5189 6050 5.362430 GGCATCAAACCAATCACCCTAATAA 59.638 40.000 0.00 0.00 0.00 1.40
5197 6058 5.945466 AATTTTGGCATCAAACCAATCAC 57.055 34.783 0.00 0.00 46.25 3.06
5216 6083 5.185668 GCACCTTTTGATTTTGCCAAATT 57.814 34.783 0.00 0.00 32.35 1.82
5265 6134 7.571080 TGGTCGGTTATACTTTCTTTTTGTT 57.429 32.000 0.00 0.00 0.00 2.83
5266 6135 7.571080 TTGGTCGGTTATACTTTCTTTTTGT 57.429 32.000 0.00 0.00 0.00 2.83
5270 6139 7.166167 AGTGATTGGTCGGTTATACTTTCTTT 58.834 34.615 0.00 0.00 0.00 2.52
5273 6142 6.200475 GCTAGTGATTGGTCGGTTATACTTTC 59.800 42.308 0.00 0.00 0.00 2.62
5275 6144 5.128171 TGCTAGTGATTGGTCGGTTATACTT 59.872 40.000 0.00 0.00 0.00 2.24
5276 6145 4.647853 TGCTAGTGATTGGTCGGTTATACT 59.352 41.667 0.00 0.00 0.00 2.12
5277 6146 4.940463 TGCTAGTGATTGGTCGGTTATAC 58.060 43.478 0.00 0.00 0.00 1.47
5285 6154 7.761409 TGTCAAATATTTGCTAGTGATTGGTC 58.239 34.615 21.15 0.00 38.05 4.02
5325 6194 3.755378 AGGATATTCTCAATTGGCGATGC 59.245 43.478 5.42 0.00 0.00 3.91
5326 6195 4.999311 TCAGGATATTCTCAATTGGCGATG 59.001 41.667 5.42 0.00 0.00 3.84
5327 6196 4.999950 GTCAGGATATTCTCAATTGGCGAT 59.000 41.667 5.42 0.04 0.00 4.58
5328 6197 4.380531 GTCAGGATATTCTCAATTGGCGA 58.619 43.478 5.42 0.00 0.00 5.54
5329 6198 3.185188 CGTCAGGATATTCTCAATTGGCG 59.815 47.826 5.42 0.00 0.00 5.69
5330 6199 4.130118 ACGTCAGGATATTCTCAATTGGC 58.870 43.478 5.42 0.00 0.00 4.52
5331 6200 4.445718 CGACGTCAGGATATTCTCAATTGG 59.554 45.833 17.16 0.00 0.00 3.16
5332 6201 5.043903 ACGACGTCAGGATATTCTCAATTG 58.956 41.667 17.16 0.00 0.00 2.32
5333 6202 5.263968 ACGACGTCAGGATATTCTCAATT 57.736 39.130 17.16 0.00 0.00 2.32
5334 6203 4.261656 GGACGACGTCAGGATATTCTCAAT 60.262 45.833 27.77 0.00 33.68 2.57
5335 6204 3.066342 GGACGACGTCAGGATATTCTCAA 59.934 47.826 27.77 0.00 33.68 3.02
5336 6205 2.617308 GGACGACGTCAGGATATTCTCA 59.383 50.000 27.77 0.00 33.68 3.27
5337 6206 2.617308 TGGACGACGTCAGGATATTCTC 59.383 50.000 27.77 8.26 33.68 2.87
5340 6209 3.021695 TCTTGGACGACGTCAGGATATT 58.978 45.455 27.77 0.00 33.68 1.28
5375 6245 3.559069 CACCATATGCATCTTTCCCACT 58.441 45.455 0.19 0.00 0.00 4.00
5378 6248 2.949447 ACCACCATATGCATCTTTCCC 58.051 47.619 0.19 0.00 0.00 3.97
5392 6262 4.337145 ACTGGCGAAATTATTTACCACCA 58.663 39.130 7.56 4.71 0.00 4.17
5402 6272 6.029289 ACAGTTTGAGCTACTGGCGAAATTA 61.029 40.000 17.32 0.00 45.67 1.40
5403 6273 5.282126 ACAGTTTGAGCTACTGGCGAAATT 61.282 41.667 17.32 0.00 45.67 1.82
5408 6278 0.792640 CACAGTTTGAGCTACTGGCG 59.207 55.000 17.32 6.32 45.67 5.69
5414 6284 1.003839 CGGCCCACAGTTTGAGCTA 60.004 57.895 0.00 0.00 0.00 3.32
5416 6286 1.856265 CTTCGGCCCACAGTTTGAGC 61.856 60.000 0.00 0.00 0.00 4.26
5421 6291 1.002134 CCATCTTCGGCCCACAGTT 60.002 57.895 0.00 0.00 0.00 3.16
5423 6293 0.533755 GATCCATCTTCGGCCCACAG 60.534 60.000 0.00 0.00 0.00 3.66
5429 6299 1.277557 AGCTATGGATCCATCTTCGGC 59.722 52.381 30.61 23.71 37.82 5.54
5431 6301 3.006217 TGTGAGCTATGGATCCATCTTCG 59.994 47.826 30.61 17.48 37.82 3.79
5433 6303 3.244491 GCTGTGAGCTATGGATCCATCTT 60.244 47.826 30.61 16.80 38.45 2.40
5455 6325 9.463443 TTGAATATATACTGTTCATGTCTCACG 57.537 33.333 0.00 0.00 35.25 4.35
5482 6412 5.390991 CGAGCTGAAAGTCCAAATCCTTTAC 60.391 44.000 0.00 0.00 35.30 2.01
5528 6462 6.847956 TCTGAAAATGTTTGAATTTGCCAG 57.152 33.333 0.00 0.00 35.04 4.85
5555 6492 4.077822 CAGAGGAAAAGAATGCTCCTTGT 58.922 43.478 0.00 0.00 39.76 3.16
5556 6493 3.442977 CCAGAGGAAAAGAATGCTCCTTG 59.557 47.826 0.00 0.00 39.76 3.61
5557 6494 3.331889 TCCAGAGGAAAAGAATGCTCCTT 59.668 43.478 0.00 0.00 39.76 3.36
5558 6495 2.915604 TCCAGAGGAAAAGAATGCTCCT 59.084 45.455 0.00 0.00 42.44 3.69
5626 6571 9.998752 TGAGGATAAATAAATGGTAAAAAGGGA 57.001 29.630 0.00 0.00 0.00 4.20
5682 6733 3.389925 TGATCTTTTGCCCTTTTGCAG 57.610 42.857 0.00 0.00 43.21 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.