Multiple sequence alignment - TraesCS7B01G051600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G051600 chr7B 100.000 2236 0 0 1 2236 54049842 54052077 0.000000e+00 4093
1 TraesCS7B01G051600 chr7B 98.750 320 3 1 1 320 54050428 54050746 3.220000e-158 568
2 TraesCS7B01G051600 chr6B 98.586 1910 21 5 331 2236 596602164 596604071 0.000000e+00 3373
3 TraesCS7B01G051600 chr6B 99.375 320 2 0 1 320 596602420 596602739 4.140000e-162 580
4 TraesCS7B01G051600 chr6B 99.062 320 3 0 1 320 307027250 307026931 1.930000e-160 575
5 TraesCS7B01G051600 chr7A 98.534 1910 22 4 331 2236 638507971 638509878 0.000000e+00 3367
6 TraesCS7B01G051600 chr7A 98.325 1911 24 6 331 2236 708245319 708243412 0.000000e+00 3345
7 TraesCS7B01G051600 chr7A 99.688 320 1 0 1 320 708245065 708244746 8.900000e-164 586
8 TraesCS7B01G051600 chr7A 98.750 320 4 0 1 320 638508227 638508546 8.960000e-159 569
9 TraesCS7B01G051600 chrUn 98.482 1910 23 4 331 2236 171007980 171006073 0.000000e+00 3362
10 TraesCS7B01G051600 chrUn 99.375 320 2 0 1 320 171007724 171007405 4.140000e-162 580
11 TraesCS7B01G051600 chrUn 98.750 320 4 0 1 320 432741791 432741472 8.960000e-159 569
12 TraesCS7B01G051600 chr1B 98.325 1910 25 5 331 2236 672540917 672539011 0.000000e+00 3343
13 TraesCS7B01G051600 chr5B 98.220 1910 29 4 331 2236 567279689 567277781 0.000000e+00 3334
14 TraesCS7B01G051600 chr5B 99.375 320 2 0 1 320 567279433 567279114 4.140000e-162 580
15 TraesCS7B01G051600 chr7D 98.062 1909 28 4 331 2236 382089493 382087591 0.000000e+00 3312
16 TraesCS7B01G051600 chr7D 97.959 1911 26 6 331 2236 626711501 626713403 0.000000e+00 3301
17 TraesCS7B01G051600 chr4B 97.955 1907 33 5 334 2236 623347054 623345150 0.000000e+00 3301
18 TraesCS7B01G051600 chr1D 98.750 320 4 0 1 320 212446134 212446453 8.960000e-159 569
19 TraesCS7B01G051600 chr2B 98.742 318 4 0 1 318 391225805 391226122 1.160000e-157 566


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G051600 chr7B 54049842 54052077 2235 False 2330.5 4093 99.3750 1 2236 2 chr7B.!!$F1 2235
1 TraesCS7B01G051600 chr6B 596602164 596604071 1907 False 1976.5 3373 98.9805 1 2236 2 chr6B.!!$F1 2235
2 TraesCS7B01G051600 chr7A 638507971 638509878 1907 False 1968.0 3367 98.6420 1 2236 2 chr7A.!!$F1 2235
3 TraesCS7B01G051600 chr7A 708243412 708245319 1907 True 1965.5 3345 99.0065 1 2236 2 chr7A.!!$R1 2235
4 TraesCS7B01G051600 chrUn 171006073 171007980 1907 True 1971.0 3362 98.9285 1 2236 2 chrUn.!!$R2 2235
5 TraesCS7B01G051600 chr1B 672539011 672540917 1906 True 3343.0 3343 98.3250 331 2236 1 chr1B.!!$R1 1905
6 TraesCS7B01G051600 chr5B 567277781 567279689 1908 True 1957.0 3334 98.7975 1 2236 2 chr5B.!!$R1 2235
7 TraesCS7B01G051600 chr7D 382087591 382089493 1902 True 3312.0 3312 98.0620 331 2236 1 chr7D.!!$R1 1905
8 TraesCS7B01G051600 chr7D 626711501 626713403 1902 False 3301.0 3301 97.9590 331 2236 1 chr7D.!!$F1 1905
9 TraesCS7B01G051600 chr4B 623345150 623347054 1904 True 3301.0 3301 97.9550 334 2236 1 chr4B.!!$R1 1902

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.033405 CCCCCTAGAGTGGACGAGAA 60.033 60.0 0.0 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 1386 1.304282 GGCAAATGGGAGGCTCTCA 59.696 57.895 21.29 21.29 31.08 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.129262 TGGGTCTACATTCATCCCTGA 57.871 47.619 0.00 0.00 38.95 3.86
22 23 3.459828 TGGGTCTACATTCATCCCTGAA 58.540 45.455 0.00 0.00 45.15 3.02
30 31 2.293677 TTCATCCCTGAATGTCGTCG 57.706 50.000 0.00 0.00 36.46 5.12
31 32 0.459899 TCATCCCTGAATGTCGTCGG 59.540 55.000 0.00 0.00 0.00 4.79
32 33 0.530650 CATCCCTGAATGTCGTCGGG 60.531 60.000 0.00 0.00 42.91 5.14
33 34 0.976073 ATCCCTGAATGTCGTCGGGT 60.976 55.000 0.00 0.00 41.86 5.28
34 35 0.323633 TCCCTGAATGTCGTCGGGTA 60.324 55.000 0.00 0.00 41.86 3.69
35 36 0.179119 CCCTGAATGTCGTCGGGTAC 60.179 60.000 0.00 0.00 41.86 3.34
36 37 0.815734 CCTGAATGTCGTCGGGTACT 59.184 55.000 0.00 0.00 39.00 2.73
37 38 1.202268 CCTGAATGTCGTCGGGTACTC 60.202 57.143 0.00 0.00 39.00 2.59
38 39 1.743958 CTGAATGTCGTCGGGTACTCT 59.256 52.381 0.00 0.00 0.00 3.24
39 40 2.163815 CTGAATGTCGTCGGGTACTCTT 59.836 50.000 0.00 0.00 0.00 2.85
40 41 2.163010 TGAATGTCGTCGGGTACTCTTC 59.837 50.000 0.00 0.00 0.00 2.87
41 42 1.101331 ATGTCGTCGGGTACTCTTCC 58.899 55.000 0.00 0.00 0.00 3.46
42 43 0.962356 TGTCGTCGGGTACTCTTCCC 60.962 60.000 0.00 0.00 41.41 3.97
43 44 0.679321 GTCGTCGGGTACTCTTCCCT 60.679 60.000 0.00 0.00 42.56 4.20
44 45 0.038744 TCGTCGGGTACTCTTCCCTT 59.961 55.000 0.00 0.00 42.56 3.95
45 46 0.455005 CGTCGGGTACTCTTCCCTTC 59.545 60.000 0.00 0.00 42.56 3.46
46 47 0.822811 GTCGGGTACTCTTCCCTTCC 59.177 60.000 0.00 0.00 42.56 3.46
47 48 0.325016 TCGGGTACTCTTCCCTTCCC 60.325 60.000 0.00 0.00 42.56 3.97
48 49 1.335882 CGGGTACTCTTCCCTTCCCC 61.336 65.000 0.00 0.00 42.56 4.81
49 50 1.335882 GGGTACTCTTCCCTTCCCCG 61.336 65.000 0.00 0.00 41.58 5.73
50 51 1.521141 GTACTCTTCCCTTCCCCGC 59.479 63.158 0.00 0.00 0.00 6.13
51 52 1.688187 TACTCTTCCCTTCCCCGCC 60.688 63.158 0.00 0.00 0.00 6.13
52 53 2.465010 TACTCTTCCCTTCCCCGCCA 62.465 60.000 0.00 0.00 0.00 5.69
53 54 2.286121 TCTTCCCTTCCCCGCCAT 60.286 61.111 0.00 0.00 0.00 4.40
54 55 1.926426 CTCTTCCCTTCCCCGCCATT 61.926 60.000 0.00 0.00 0.00 3.16
55 56 1.453928 CTTCCCTTCCCCGCCATTC 60.454 63.158 0.00 0.00 0.00 2.67
56 57 1.926426 CTTCCCTTCCCCGCCATTCT 61.926 60.000 0.00 0.00 0.00 2.40
57 58 1.506028 TTCCCTTCCCCGCCATTCTT 61.506 55.000 0.00 0.00 0.00 2.52
58 59 1.754234 CCCTTCCCCGCCATTCTTG 60.754 63.158 0.00 0.00 0.00 3.02
59 60 1.000896 CCTTCCCCGCCATTCTTGT 60.001 57.895 0.00 0.00 0.00 3.16
60 61 0.254747 CCTTCCCCGCCATTCTTGTA 59.745 55.000 0.00 0.00 0.00 2.41
61 62 1.340600 CCTTCCCCGCCATTCTTGTAA 60.341 52.381 0.00 0.00 0.00 2.41
62 63 1.743394 CTTCCCCGCCATTCTTGTAAC 59.257 52.381 0.00 0.00 0.00 2.50
63 64 0.034863 TCCCCGCCATTCTTGTAACC 60.035 55.000 0.00 0.00 0.00 2.85
64 65 1.373590 CCCCGCCATTCTTGTAACCG 61.374 60.000 0.00 0.00 0.00 4.44
65 66 0.675522 CCCGCCATTCTTGTAACCGT 60.676 55.000 0.00 0.00 0.00 4.83
66 67 0.725117 CCGCCATTCTTGTAACCGTC 59.275 55.000 0.00 0.00 0.00 4.79
67 68 1.434555 CGCCATTCTTGTAACCGTCA 58.565 50.000 0.00 0.00 0.00 4.35
68 69 1.127951 CGCCATTCTTGTAACCGTCAC 59.872 52.381 0.00 0.00 0.00 3.67
69 70 1.467342 GCCATTCTTGTAACCGTCACC 59.533 52.381 0.00 0.00 0.00 4.02
70 71 2.874457 GCCATTCTTGTAACCGTCACCT 60.874 50.000 0.00 0.00 0.00 4.00
71 72 2.742053 CCATTCTTGTAACCGTCACCTG 59.258 50.000 0.00 0.00 0.00 4.00
72 73 3.399330 CATTCTTGTAACCGTCACCTGT 58.601 45.455 0.00 0.00 0.00 4.00
73 74 4.561938 CCATTCTTGTAACCGTCACCTGTA 60.562 45.833 0.00 0.00 0.00 2.74
74 75 4.669206 TTCTTGTAACCGTCACCTGTAA 57.331 40.909 0.00 0.00 0.00 2.41
75 76 4.877378 TCTTGTAACCGTCACCTGTAAT 57.123 40.909 0.00 0.00 0.00 1.89
76 77 4.813027 TCTTGTAACCGTCACCTGTAATC 58.187 43.478 0.00 0.00 0.00 1.75
77 78 3.598019 TGTAACCGTCACCTGTAATCC 57.402 47.619 0.00 0.00 0.00 3.01
78 79 2.094597 TGTAACCGTCACCTGTAATCCG 60.095 50.000 0.00 0.00 0.00 4.18
79 80 0.390735 AACCGTCACCTGTAATCCGC 60.391 55.000 0.00 0.00 0.00 5.54
80 81 1.876714 CCGTCACCTGTAATCCGCG 60.877 63.158 0.00 0.00 0.00 6.46
81 82 2.514013 CGTCACCTGTAATCCGCGC 61.514 63.158 0.00 0.00 0.00 6.86
82 83 1.447140 GTCACCTGTAATCCGCGCA 60.447 57.895 8.75 0.00 0.00 6.09
83 84 1.153647 TCACCTGTAATCCGCGCAG 60.154 57.895 8.75 1.45 0.00 5.18
85 86 2.186903 CCTGTAATCCGCGCAGGT 59.813 61.111 18.26 0.00 43.42 4.00
86 87 2.173669 CCTGTAATCCGCGCAGGTG 61.174 63.158 18.26 0.00 43.42 4.00
87 88 1.447838 CTGTAATCCGCGCAGGTGT 60.448 57.895 8.75 5.11 41.99 4.16
88 89 1.695893 CTGTAATCCGCGCAGGTGTG 61.696 60.000 8.75 0.00 41.99 3.82
89 90 1.740296 GTAATCCGCGCAGGTGTGT 60.740 57.895 8.75 0.37 41.99 3.72
90 91 1.447140 TAATCCGCGCAGGTGTGTC 60.447 57.895 8.75 0.00 41.99 3.67
91 92 2.845752 TAATCCGCGCAGGTGTGTCC 62.846 60.000 8.75 0.00 41.99 4.02
101 102 3.315949 GTGTGTCCGCACCCCCTA 61.316 66.667 0.00 0.00 44.65 3.53
102 103 3.000819 TGTGTCCGCACCCCCTAG 61.001 66.667 0.00 0.00 44.65 3.02
103 104 2.682494 GTGTCCGCACCCCCTAGA 60.682 66.667 0.00 0.00 39.61 2.43
104 105 2.363795 TGTCCGCACCCCCTAGAG 60.364 66.667 0.00 0.00 0.00 2.43
105 106 2.363925 GTCCGCACCCCCTAGAGT 60.364 66.667 0.00 0.00 0.00 3.24
106 107 2.363795 TCCGCACCCCCTAGAGTG 60.364 66.667 0.00 0.00 37.05 3.51
107 108 3.470888 CCGCACCCCCTAGAGTGG 61.471 72.222 8.87 1.28 34.48 4.00
108 109 2.363795 CGCACCCCCTAGAGTGGA 60.364 66.667 8.87 0.00 34.48 4.02
109 110 2.722201 CGCACCCCCTAGAGTGGAC 61.722 68.421 8.87 0.00 34.48 4.02
110 111 2.722201 GCACCCCCTAGAGTGGACG 61.722 68.421 8.87 0.00 34.48 4.79
111 112 1.000019 CACCCCCTAGAGTGGACGA 60.000 63.158 0.00 0.00 0.00 4.20
112 113 1.038130 CACCCCCTAGAGTGGACGAG 61.038 65.000 0.00 0.00 0.00 4.18
113 114 1.212934 ACCCCCTAGAGTGGACGAGA 61.213 60.000 0.00 0.00 0.00 4.04
114 115 0.033405 CCCCCTAGAGTGGACGAGAA 60.033 60.000 0.00 0.00 0.00 2.87
115 116 1.618888 CCCCCTAGAGTGGACGAGAAA 60.619 57.143 0.00 0.00 0.00 2.52
116 117 1.751924 CCCCTAGAGTGGACGAGAAAG 59.248 57.143 0.00 0.00 0.00 2.62
117 118 2.620886 CCCCTAGAGTGGACGAGAAAGA 60.621 54.545 0.00 0.00 0.00 2.52
118 119 3.090037 CCCTAGAGTGGACGAGAAAGAA 58.910 50.000 0.00 0.00 0.00 2.52
119 120 3.510360 CCCTAGAGTGGACGAGAAAGAAA 59.490 47.826 0.00 0.00 0.00 2.52
120 121 4.381079 CCCTAGAGTGGACGAGAAAGAAAG 60.381 50.000 0.00 0.00 0.00 2.62
121 122 3.669251 AGAGTGGACGAGAAAGAAAGG 57.331 47.619 0.00 0.00 0.00 3.11
122 123 3.231818 AGAGTGGACGAGAAAGAAAGGA 58.768 45.455 0.00 0.00 0.00 3.36
123 124 3.835395 AGAGTGGACGAGAAAGAAAGGAT 59.165 43.478 0.00 0.00 0.00 3.24
124 125 4.284746 AGAGTGGACGAGAAAGAAAGGATT 59.715 41.667 0.00 0.00 0.00 3.01
125 126 4.974399 AGTGGACGAGAAAGAAAGGATTT 58.026 39.130 0.00 0.00 43.98 2.17
126 127 5.377478 AGTGGACGAGAAAGAAAGGATTTT 58.623 37.500 0.00 0.00 39.27 1.82
127 128 5.828328 AGTGGACGAGAAAGAAAGGATTTTT 59.172 36.000 0.00 0.00 39.27 1.94
143 144 1.842052 TTTTTATCGGAGCAACCCCC 58.158 50.000 0.00 0.00 34.64 5.40
164 165 4.234673 GGTTCCAGACCCAGGAGT 57.765 61.111 0.00 0.00 43.06 3.85
165 166 2.464582 GGTTCCAGACCCAGGAGTT 58.535 57.895 0.00 0.00 43.06 3.01
166 167 0.325272 GGTTCCAGACCCAGGAGTTC 59.675 60.000 0.00 0.00 43.06 3.01
167 168 1.056660 GTTCCAGACCCAGGAGTTCA 58.943 55.000 0.00 0.00 36.33 3.18
168 169 1.056660 TTCCAGACCCAGGAGTTCAC 58.943 55.000 0.00 0.00 36.33 3.18
169 170 0.191064 TCCAGACCCAGGAGTTCACT 59.809 55.000 0.00 0.00 0.00 3.41
170 171 1.059913 CCAGACCCAGGAGTTCACTT 58.940 55.000 0.00 0.00 0.00 3.16
171 172 1.421646 CCAGACCCAGGAGTTCACTTT 59.578 52.381 0.00 0.00 0.00 2.66
172 173 2.551071 CCAGACCCAGGAGTTCACTTTC 60.551 54.545 0.00 0.00 0.00 2.62
173 174 1.700186 AGACCCAGGAGTTCACTTTCC 59.300 52.381 0.00 0.00 0.00 3.13
174 175 0.771755 ACCCAGGAGTTCACTTTCCC 59.228 55.000 0.00 0.00 33.83 3.97
175 176 0.321653 CCCAGGAGTTCACTTTCCCG 60.322 60.000 0.00 0.00 33.83 5.14
176 177 0.396811 CCAGGAGTTCACTTTCCCGT 59.603 55.000 0.00 0.00 33.83 5.28
177 178 1.621814 CCAGGAGTTCACTTTCCCGTA 59.378 52.381 0.00 0.00 33.83 4.02
178 179 2.236395 CCAGGAGTTCACTTTCCCGTAT 59.764 50.000 0.00 0.00 33.83 3.06
179 180 3.262420 CAGGAGTTCACTTTCCCGTATG 58.738 50.000 0.00 0.00 33.83 2.39
180 181 3.056107 CAGGAGTTCACTTTCCCGTATGA 60.056 47.826 0.00 0.00 33.83 2.15
181 182 3.195825 AGGAGTTCACTTTCCCGTATGAG 59.804 47.826 0.00 0.00 33.83 2.90
182 183 2.930682 GAGTTCACTTTCCCGTATGAGC 59.069 50.000 0.00 0.00 0.00 4.26
183 184 2.301870 AGTTCACTTTCCCGTATGAGCA 59.698 45.455 0.00 0.00 0.00 4.26
184 185 3.055094 AGTTCACTTTCCCGTATGAGCAT 60.055 43.478 0.00 0.00 0.00 3.79
185 186 3.627395 TCACTTTCCCGTATGAGCATT 57.373 42.857 0.00 0.00 0.00 3.56
186 187 3.531538 TCACTTTCCCGTATGAGCATTC 58.468 45.455 0.00 0.00 0.00 2.67
187 188 2.285220 CACTTTCCCGTATGAGCATTCG 59.715 50.000 2.99 2.99 0.00 3.34
188 189 1.867233 CTTTCCCGTATGAGCATTCGG 59.133 52.381 18.05 18.05 46.84 4.30
189 190 0.828022 TTCCCGTATGAGCATTCGGT 59.172 50.000 21.54 0.00 46.18 4.69
190 191 1.694844 TCCCGTATGAGCATTCGGTA 58.305 50.000 21.54 8.35 46.18 4.02
191 192 1.338973 TCCCGTATGAGCATTCGGTAC 59.661 52.381 21.54 0.26 46.18 3.34
192 193 1.067974 CCCGTATGAGCATTCGGTACA 59.932 52.381 21.54 0.00 46.18 2.90
193 194 2.288825 CCCGTATGAGCATTCGGTACAT 60.289 50.000 21.54 0.00 46.18 2.29
194 195 3.057104 CCCGTATGAGCATTCGGTACATA 60.057 47.826 21.54 0.00 46.18 2.29
195 196 4.381612 CCCGTATGAGCATTCGGTACATAT 60.382 45.833 21.54 0.00 46.18 1.78
196 197 5.163591 CCCGTATGAGCATTCGGTACATATA 60.164 44.000 21.54 0.00 46.18 0.86
197 198 6.461092 CCCGTATGAGCATTCGGTACATATAT 60.461 42.308 21.54 0.00 46.18 0.86
198 199 7.255346 CCCGTATGAGCATTCGGTACATATATA 60.255 40.741 21.54 0.00 46.18 0.86
199 200 8.132995 CCGTATGAGCATTCGGTACATATATAA 58.867 37.037 17.10 0.00 43.75 0.98
200 201 9.170584 CGTATGAGCATTCGGTACATATATAAG 57.829 37.037 0.00 0.00 0.00 1.73
203 204 8.117813 TGAGCATTCGGTACATATATAAGTCA 57.882 34.615 0.00 0.00 0.00 3.41
204 205 8.244113 TGAGCATTCGGTACATATATAAGTCAG 58.756 37.037 0.00 0.00 0.00 3.51
205 206 8.123639 AGCATTCGGTACATATATAAGTCAGT 57.876 34.615 0.00 0.00 0.00 3.41
206 207 8.029522 AGCATTCGGTACATATATAAGTCAGTG 58.970 37.037 0.00 0.00 0.00 3.66
207 208 7.275779 GCATTCGGTACATATATAAGTCAGTGG 59.724 40.741 0.00 0.00 0.00 4.00
208 209 8.520351 CATTCGGTACATATATAAGTCAGTGGA 58.480 37.037 0.00 0.00 0.00 4.02
209 210 8.467963 TTCGGTACATATATAAGTCAGTGGAA 57.532 34.615 0.00 0.00 0.00 3.53
210 211 8.107399 TCGGTACATATATAAGTCAGTGGAAG 57.893 38.462 0.00 0.00 0.00 3.46
211 212 7.940688 TCGGTACATATATAAGTCAGTGGAAGA 59.059 37.037 0.00 0.00 0.00 2.87
212 213 8.237949 CGGTACATATATAAGTCAGTGGAAGAG 58.762 40.741 0.00 0.00 0.00 2.85
213 214 9.080097 GGTACATATATAAGTCAGTGGAAGAGT 57.920 37.037 0.00 0.00 0.00 3.24
215 216 8.768501 ACATATATAAGTCAGTGGAAGAGTCA 57.231 34.615 0.00 0.00 0.00 3.41
216 217 9.201989 ACATATATAAGTCAGTGGAAGAGTCAA 57.798 33.333 0.00 0.00 0.00 3.18
219 220 3.760580 AGTCAGTGGAAGAGTCAAAGG 57.239 47.619 0.00 0.00 0.00 3.11
220 221 2.370189 AGTCAGTGGAAGAGTCAAAGGG 59.630 50.000 0.00 0.00 0.00 3.95
221 222 2.104963 GTCAGTGGAAGAGTCAAAGGGT 59.895 50.000 0.00 0.00 0.00 4.34
222 223 2.368875 TCAGTGGAAGAGTCAAAGGGTC 59.631 50.000 0.00 0.00 0.00 4.46
223 224 2.104792 CAGTGGAAGAGTCAAAGGGTCA 59.895 50.000 0.00 0.00 0.00 4.02
224 225 2.104963 AGTGGAAGAGTCAAAGGGTCAC 59.895 50.000 0.00 0.00 0.00 3.67
225 226 1.420138 TGGAAGAGTCAAAGGGTCACC 59.580 52.381 0.00 0.00 0.00 4.02
226 227 1.420138 GGAAGAGTCAAAGGGTCACCA 59.580 52.381 0.00 0.00 40.13 4.17
227 228 2.495084 GAAGAGTCAAAGGGTCACCAC 58.505 52.381 0.00 0.00 40.13 4.16
228 229 1.807814 AGAGTCAAAGGGTCACCACT 58.192 50.000 0.00 0.00 40.13 4.00
229 230 2.972348 AGAGTCAAAGGGTCACCACTA 58.028 47.619 0.00 0.00 40.13 2.74
230 231 2.633481 AGAGTCAAAGGGTCACCACTAC 59.367 50.000 0.00 0.00 40.13 2.73
231 232 2.633481 GAGTCAAAGGGTCACCACTACT 59.367 50.000 0.00 0.00 40.13 2.57
232 233 2.368875 AGTCAAAGGGTCACCACTACTG 59.631 50.000 0.00 0.00 40.13 2.74
233 234 2.367567 GTCAAAGGGTCACCACTACTGA 59.632 50.000 0.00 0.00 40.13 3.41
234 235 2.632996 TCAAAGGGTCACCACTACTGAG 59.367 50.000 0.00 0.00 40.13 3.35
235 236 1.645710 AAGGGTCACCACTACTGAGG 58.354 55.000 0.00 0.00 40.13 3.86
236 237 0.784495 AGGGTCACCACTACTGAGGA 59.216 55.000 0.00 0.00 40.13 3.71
237 238 1.362932 AGGGTCACCACTACTGAGGAT 59.637 52.381 0.00 0.00 40.13 3.24
238 239 1.757699 GGGTCACCACTACTGAGGATC 59.242 57.143 0.00 0.00 36.50 3.36
239 240 2.624557 GGGTCACCACTACTGAGGATCT 60.625 54.545 0.00 0.00 36.50 2.75
240 241 2.691011 GGTCACCACTACTGAGGATCTC 59.309 54.545 0.00 0.00 34.92 2.75
241 242 2.691011 GTCACCACTACTGAGGATCTCC 59.309 54.545 0.00 0.00 34.92 3.71
242 243 2.035632 CACCACTACTGAGGATCTCCC 58.964 57.143 0.00 0.00 36.42 4.30
243 244 1.062810 ACCACTACTGAGGATCTCCCC 60.063 57.143 0.00 0.00 36.42 4.81
244 245 1.710816 CACTACTGAGGATCTCCCCC 58.289 60.000 0.00 0.00 36.42 5.40
266 267 5.189659 CCTTATCTTAGAAGGGTCGTCTG 57.810 47.826 0.00 0.00 39.96 3.51
267 268 4.888239 CCTTATCTTAGAAGGGTCGTCTGA 59.112 45.833 0.00 0.00 39.96 3.27
268 269 5.009210 CCTTATCTTAGAAGGGTCGTCTGAG 59.991 48.000 0.00 0.00 39.96 3.35
269 270 2.724454 TCTTAGAAGGGTCGTCTGAGG 58.276 52.381 3.74 0.00 31.39 3.86
270 271 1.751924 CTTAGAAGGGTCGTCTGAGGG 59.248 57.143 0.00 0.00 0.00 4.30
271 272 0.702902 TAGAAGGGTCGTCTGAGGGT 59.297 55.000 0.00 0.00 0.00 4.34
272 273 0.178929 AGAAGGGTCGTCTGAGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
273 274 0.246910 GAAGGGTCGTCTGAGGGTTC 59.753 60.000 0.00 0.00 0.00 3.62
274 275 1.533469 AAGGGTCGTCTGAGGGTTCG 61.533 60.000 0.00 0.00 0.00 3.95
275 276 2.126031 GGTCGTCTGAGGGTTCGC 60.126 66.667 0.00 0.00 0.00 4.70
276 277 2.126031 GTCGTCTGAGGGTTCGCC 60.126 66.667 0.00 0.00 0.00 5.54
277 278 3.744719 TCGTCTGAGGGTTCGCCG 61.745 66.667 0.00 0.00 38.45 6.46
286 287 3.428282 GGTTCGCCGCGGTTCATT 61.428 61.111 28.70 0.00 0.00 2.57
287 288 2.202298 GTTCGCCGCGGTTCATTG 60.202 61.111 28.70 10.00 0.00 2.82
288 289 4.096558 TTCGCCGCGGTTCATTGC 62.097 61.111 28.70 9.28 0.00 3.56
290 291 4.817063 CGCCGCGGTTCATTGCTG 62.817 66.667 28.70 3.05 0.00 4.41
291 292 3.737172 GCCGCGGTTCATTGCTGT 61.737 61.111 28.70 0.00 0.00 4.40
292 293 2.176546 CCGCGGTTCATTGCTGTG 59.823 61.111 19.50 0.00 0.00 3.66
293 294 2.502510 CGCGGTTCATTGCTGTGC 60.503 61.111 0.00 0.00 0.00 4.57
294 295 2.956987 GCGGTTCATTGCTGTGCT 59.043 55.556 0.00 0.00 0.00 4.40
295 296 1.286880 GCGGTTCATTGCTGTGCTT 59.713 52.632 0.00 0.00 0.00 3.91
296 297 0.521291 GCGGTTCATTGCTGTGCTTA 59.479 50.000 0.00 0.00 0.00 3.09
297 298 1.729149 GCGGTTCATTGCTGTGCTTAC 60.729 52.381 0.00 0.00 0.00 2.34
298 299 1.535028 CGGTTCATTGCTGTGCTTACA 59.465 47.619 0.00 0.00 0.00 2.41
310 311 2.889852 GTGCTTACACACTAGGCTACC 58.110 52.381 0.00 0.00 46.61 3.18
311 312 1.829222 TGCTTACACACTAGGCTACCC 59.171 52.381 0.00 0.00 0.00 3.69
312 313 2.108970 GCTTACACACTAGGCTACCCT 58.891 52.381 0.00 0.00 45.61 4.34
313 314 2.500504 GCTTACACACTAGGCTACCCTT 59.499 50.000 0.00 0.00 42.87 3.95
314 315 3.430513 GCTTACACACTAGGCTACCCTTC 60.431 52.174 0.00 0.00 42.87 3.46
315 316 2.625282 ACACACTAGGCTACCCTTCT 57.375 50.000 0.00 0.00 42.87 2.85
316 317 2.458620 ACACACTAGGCTACCCTTCTC 58.541 52.381 0.00 0.00 42.87 2.87
317 318 1.757699 CACACTAGGCTACCCTTCTCC 59.242 57.143 0.00 0.00 42.87 3.71
318 319 1.033574 CACTAGGCTACCCTTCTCCG 58.966 60.000 0.00 0.00 42.87 4.63
319 320 0.924823 ACTAGGCTACCCTTCTCCGA 59.075 55.000 0.00 0.00 42.87 4.55
787 790 8.932945 ATGAGCATTCGGTACATATATAAGTG 57.067 34.615 0.87 0.00 0.00 3.16
938 942 3.288964 CCACCTATCACTAGTCTTCGGT 58.711 50.000 0.00 0.00 0.00 4.69
1380 1386 4.762289 AGATGGCCTCTATCGTCTTTTT 57.238 40.909 3.32 0.00 30.26 1.94
1689 1695 1.051812 CGGCTACTCTGGGATGGATT 58.948 55.000 0.00 0.00 0.00 3.01
2006 2015 0.035598 TCGGGCTTGGATTCGTTTCA 59.964 50.000 0.00 0.00 0.00 2.69
2138 2148 2.962859 AGGAACTGGCCAATTCACTTT 58.037 42.857 26.87 7.82 37.18 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.668821 TCAGGGATGAATGTAGACCCAT 58.331 45.455 0.00 0.00 42.62 4.00
1 2 3.129262 TCAGGGATGAATGTAGACCCA 57.871 47.619 0.00 0.00 42.62 4.51
2 3 4.392940 CATTCAGGGATGAATGTAGACCC 58.607 47.826 18.44 0.00 45.94 4.46
10 11 2.483714 CCGACGACATTCAGGGATGAAT 60.484 50.000 0.00 0.00 38.90 2.57
11 12 1.134818 CCGACGACATTCAGGGATGAA 60.135 52.381 0.00 0.00 0.00 2.57
12 13 0.459899 CCGACGACATTCAGGGATGA 59.540 55.000 0.00 0.00 0.00 2.92
13 14 0.530650 CCCGACGACATTCAGGGATG 60.531 60.000 0.00 0.00 44.70 3.51
14 15 0.976073 ACCCGACGACATTCAGGGAT 60.976 55.000 5.77 0.00 44.70 3.85
15 16 0.323633 TACCCGACGACATTCAGGGA 60.324 55.000 5.77 0.00 44.70 4.20
17 18 0.815734 AGTACCCGACGACATTCAGG 59.184 55.000 0.00 0.00 0.00 3.86
18 19 1.743958 AGAGTACCCGACGACATTCAG 59.256 52.381 0.00 0.00 0.00 3.02
19 20 1.830279 AGAGTACCCGACGACATTCA 58.170 50.000 0.00 0.00 0.00 2.57
20 21 2.479219 GGAAGAGTACCCGACGACATTC 60.479 54.545 0.00 0.00 0.00 2.67
21 22 1.475682 GGAAGAGTACCCGACGACATT 59.524 52.381 0.00 0.00 0.00 2.71
22 23 1.101331 GGAAGAGTACCCGACGACAT 58.899 55.000 0.00 0.00 0.00 3.06
23 24 0.962356 GGGAAGAGTACCCGACGACA 60.962 60.000 0.00 0.00 37.85 4.35
24 25 1.805910 GGGAAGAGTACCCGACGAC 59.194 63.158 0.00 0.00 37.85 4.34
25 26 4.326255 GGGAAGAGTACCCGACGA 57.674 61.111 0.00 0.00 37.85 4.20
31 32 1.969200 GCGGGGAAGGGAAGAGTACC 61.969 65.000 0.00 0.00 0.00 3.34
32 33 1.521141 GCGGGGAAGGGAAGAGTAC 59.479 63.158 0.00 0.00 0.00 2.73
33 34 1.688187 GGCGGGGAAGGGAAGAGTA 60.688 63.158 0.00 0.00 0.00 2.59
34 35 3.009714 GGCGGGGAAGGGAAGAGT 61.010 66.667 0.00 0.00 0.00 3.24
35 36 1.926426 AATGGCGGGGAAGGGAAGAG 61.926 60.000 0.00 0.00 0.00 2.85
36 37 1.921869 GAATGGCGGGGAAGGGAAGA 61.922 60.000 0.00 0.00 0.00 2.87
37 38 1.453928 GAATGGCGGGGAAGGGAAG 60.454 63.158 0.00 0.00 0.00 3.46
38 39 1.506028 AAGAATGGCGGGGAAGGGAA 61.506 55.000 0.00 0.00 0.00 3.97
39 40 1.928567 AAGAATGGCGGGGAAGGGA 60.929 57.895 0.00 0.00 0.00 4.20
40 41 1.754234 CAAGAATGGCGGGGAAGGG 60.754 63.158 0.00 0.00 0.00 3.95
41 42 0.254747 TACAAGAATGGCGGGGAAGG 59.745 55.000 0.00 0.00 0.00 3.46
42 43 1.743394 GTTACAAGAATGGCGGGGAAG 59.257 52.381 0.00 0.00 0.00 3.46
43 44 1.614850 GGTTACAAGAATGGCGGGGAA 60.615 52.381 0.00 0.00 0.00 3.97
44 45 0.034863 GGTTACAAGAATGGCGGGGA 60.035 55.000 0.00 0.00 0.00 4.81
45 46 1.373590 CGGTTACAAGAATGGCGGGG 61.374 60.000 0.00 0.00 0.00 5.73
46 47 0.675522 ACGGTTACAAGAATGGCGGG 60.676 55.000 0.00 0.00 0.00 6.13
47 48 0.725117 GACGGTTACAAGAATGGCGG 59.275 55.000 0.00 0.00 0.00 6.13
48 49 1.127951 GTGACGGTTACAAGAATGGCG 59.872 52.381 0.00 0.00 0.00 5.69
49 50 1.467342 GGTGACGGTTACAAGAATGGC 59.533 52.381 5.38 0.00 0.00 4.40
50 51 2.742053 CAGGTGACGGTTACAAGAATGG 59.258 50.000 5.38 0.00 0.00 3.16
51 52 3.399330 ACAGGTGACGGTTACAAGAATG 58.601 45.455 5.38 0.00 33.95 2.67
52 53 3.764237 ACAGGTGACGGTTACAAGAAT 57.236 42.857 5.38 0.00 33.95 2.40
53 54 4.669206 TTACAGGTGACGGTTACAAGAA 57.331 40.909 5.38 0.00 40.14 2.52
54 55 4.322198 GGATTACAGGTGACGGTTACAAGA 60.322 45.833 5.38 0.00 40.14 3.02
55 56 3.930848 GGATTACAGGTGACGGTTACAAG 59.069 47.826 5.38 0.00 40.14 3.16
56 57 3.614630 CGGATTACAGGTGACGGTTACAA 60.615 47.826 5.38 0.00 40.14 2.41
57 58 2.094597 CGGATTACAGGTGACGGTTACA 60.095 50.000 5.38 0.00 40.14 2.41
58 59 2.533266 CGGATTACAGGTGACGGTTAC 58.467 52.381 0.00 0.00 40.14 2.50
59 60 1.135024 GCGGATTACAGGTGACGGTTA 60.135 52.381 0.00 0.00 40.14 2.85
60 61 0.390735 GCGGATTACAGGTGACGGTT 60.391 55.000 0.00 0.00 40.14 4.44
61 62 1.217244 GCGGATTACAGGTGACGGT 59.783 57.895 0.00 0.00 42.94 4.83
62 63 1.876714 CGCGGATTACAGGTGACGG 60.877 63.158 0.00 0.00 0.00 4.79
63 64 2.514013 GCGCGGATTACAGGTGACG 61.514 63.158 8.83 0.00 0.00 4.35
64 65 1.421410 CTGCGCGGATTACAGGTGAC 61.421 60.000 11.90 0.00 0.00 3.67
65 66 1.153647 CTGCGCGGATTACAGGTGA 60.154 57.895 11.90 0.00 0.00 4.02
66 67 2.173669 CCTGCGCGGATTACAGGTG 61.174 63.158 20.25 0.00 44.91 4.00
67 68 2.186903 CCTGCGCGGATTACAGGT 59.813 61.111 20.25 0.00 44.91 4.00
69 70 1.447838 ACACCTGCGCGGATTACAG 60.448 57.895 20.25 5.91 36.31 2.74
70 71 1.739929 CACACCTGCGCGGATTACA 60.740 57.895 20.25 0.00 36.31 2.41
71 72 1.693083 GACACACCTGCGCGGATTAC 61.693 60.000 20.25 0.00 36.31 1.89
72 73 1.447140 GACACACCTGCGCGGATTA 60.447 57.895 20.25 0.00 36.31 1.75
73 74 2.742372 GACACACCTGCGCGGATT 60.742 61.111 20.25 0.08 36.31 3.01
74 75 4.760047 GGACACACCTGCGCGGAT 62.760 66.667 20.25 0.00 36.31 4.18
86 87 2.682494 TCTAGGGGGTGCGGACAC 60.682 66.667 9.96 4.60 46.66 3.67
87 88 2.363795 CTCTAGGGGGTGCGGACA 60.364 66.667 9.96 0.00 0.00 4.02
88 89 2.363925 ACTCTAGGGGGTGCGGAC 60.364 66.667 0.00 0.00 0.00 4.79
89 90 2.363795 CACTCTAGGGGGTGCGGA 60.364 66.667 0.00 0.00 0.00 5.54
90 91 3.470888 CCACTCTAGGGGGTGCGG 61.471 72.222 0.00 0.00 32.68 5.69
91 92 2.363795 TCCACTCTAGGGGGTGCG 60.364 66.667 0.00 0.00 32.68 5.34
92 93 2.722201 CGTCCACTCTAGGGGGTGC 61.722 68.421 0.00 0.00 32.68 5.01
93 94 1.000019 TCGTCCACTCTAGGGGGTG 60.000 63.158 0.00 0.00 0.00 4.61
94 95 1.212934 TCTCGTCCACTCTAGGGGGT 61.213 60.000 0.00 0.00 0.00 4.95
95 96 0.033405 TTCTCGTCCACTCTAGGGGG 60.033 60.000 0.00 0.00 0.00 5.40
96 97 1.751924 CTTTCTCGTCCACTCTAGGGG 59.248 57.143 0.00 0.00 0.00 4.79
97 98 2.724454 TCTTTCTCGTCCACTCTAGGG 58.276 52.381 0.00 0.00 0.00 3.53
98 99 4.381079 CCTTTCTTTCTCGTCCACTCTAGG 60.381 50.000 0.00 0.00 0.00 3.02
99 100 4.459685 TCCTTTCTTTCTCGTCCACTCTAG 59.540 45.833 0.00 0.00 0.00 2.43
100 101 4.404640 TCCTTTCTTTCTCGTCCACTCTA 58.595 43.478 0.00 0.00 0.00 2.43
101 102 3.231818 TCCTTTCTTTCTCGTCCACTCT 58.768 45.455 0.00 0.00 0.00 3.24
102 103 3.662247 TCCTTTCTTTCTCGTCCACTC 57.338 47.619 0.00 0.00 0.00 3.51
103 104 4.625607 AATCCTTTCTTTCTCGTCCACT 57.374 40.909 0.00 0.00 0.00 4.00
104 105 5.690997 AAAATCCTTTCTTTCTCGTCCAC 57.309 39.130 0.00 0.00 0.00 4.02
124 125 1.842052 GGGGGTTGCTCCGATAAAAA 58.158 50.000 0.00 0.00 37.00 1.94
125 126 3.581163 GGGGGTTGCTCCGATAAAA 57.419 52.632 0.00 0.00 37.00 1.52
148 149 1.056660 TGAACTCCTGGGTCTGGAAC 58.943 55.000 0.00 0.00 31.33 3.62
149 150 1.056660 GTGAACTCCTGGGTCTGGAA 58.943 55.000 0.00 0.00 31.33 3.53
150 151 0.191064 AGTGAACTCCTGGGTCTGGA 59.809 55.000 0.00 0.00 31.77 3.86
151 152 1.059913 AAGTGAACTCCTGGGTCTGG 58.940 55.000 0.00 0.00 31.77 3.86
152 153 2.551071 GGAAAGTGAACTCCTGGGTCTG 60.551 54.545 0.00 0.00 31.77 3.51
153 154 1.700186 GGAAAGTGAACTCCTGGGTCT 59.300 52.381 0.00 0.00 31.77 3.85
154 155 1.271434 GGGAAAGTGAACTCCTGGGTC 60.271 57.143 0.00 0.00 31.88 4.46
155 156 0.771755 GGGAAAGTGAACTCCTGGGT 59.228 55.000 0.00 0.00 31.88 4.51
156 157 0.321653 CGGGAAAGTGAACTCCTGGG 60.322 60.000 0.00 0.00 34.85 4.45
157 158 0.396811 ACGGGAAAGTGAACTCCTGG 59.603 55.000 2.20 0.00 41.71 4.45
158 159 3.056107 TCATACGGGAAAGTGAACTCCTG 60.056 47.826 0.00 0.00 42.88 3.86
159 160 3.170717 TCATACGGGAAAGTGAACTCCT 58.829 45.455 0.00 0.00 31.88 3.69
160 161 3.522553 CTCATACGGGAAAGTGAACTCC 58.477 50.000 0.00 0.00 0.00 3.85
161 162 2.930682 GCTCATACGGGAAAGTGAACTC 59.069 50.000 0.00 0.00 0.00 3.01
162 163 2.301870 TGCTCATACGGGAAAGTGAACT 59.698 45.455 0.00 0.00 0.00 3.01
163 164 2.695359 TGCTCATACGGGAAAGTGAAC 58.305 47.619 0.00 0.00 0.00 3.18
164 165 3.627395 ATGCTCATACGGGAAAGTGAA 57.373 42.857 0.00 0.00 0.00 3.18
165 166 3.531538 GAATGCTCATACGGGAAAGTGA 58.468 45.455 0.00 0.00 0.00 3.41
166 167 2.285220 CGAATGCTCATACGGGAAAGTG 59.715 50.000 0.00 0.00 0.00 3.16
167 168 2.550978 CGAATGCTCATACGGGAAAGT 58.449 47.619 0.00 0.00 0.00 2.66
168 169 1.867233 CCGAATGCTCATACGGGAAAG 59.133 52.381 0.00 0.00 41.41 2.62
169 170 1.948104 CCGAATGCTCATACGGGAAA 58.052 50.000 0.00 0.00 41.41 3.13
170 171 3.678921 CCGAATGCTCATACGGGAA 57.321 52.632 0.00 0.00 41.41 3.97
174 175 9.170584 CTTATATATGTACCGAATGCTCATACG 57.829 37.037 0.00 0.00 0.00 3.06
177 178 8.749354 TGACTTATATATGTACCGAATGCTCAT 58.251 33.333 1.48 0.00 0.00 2.90
178 179 8.117813 TGACTTATATATGTACCGAATGCTCA 57.882 34.615 1.48 0.00 0.00 4.26
179 180 8.244802 ACTGACTTATATATGTACCGAATGCTC 58.755 37.037 1.48 0.00 0.00 4.26
180 181 8.029522 CACTGACTTATATATGTACCGAATGCT 58.970 37.037 1.48 0.00 0.00 3.79
181 182 7.275779 CCACTGACTTATATATGTACCGAATGC 59.724 40.741 1.48 0.00 0.00 3.56
182 183 8.520351 TCCACTGACTTATATATGTACCGAATG 58.480 37.037 1.48 0.00 0.00 2.67
183 184 8.645814 TCCACTGACTTATATATGTACCGAAT 57.354 34.615 1.48 0.00 0.00 3.34
184 185 8.467963 TTCCACTGACTTATATATGTACCGAA 57.532 34.615 1.48 0.00 0.00 4.30
185 186 7.940688 TCTTCCACTGACTTATATATGTACCGA 59.059 37.037 1.48 0.00 0.00 4.69
186 187 8.107399 TCTTCCACTGACTTATATATGTACCG 57.893 38.462 1.48 0.00 0.00 4.02
187 188 9.080097 ACTCTTCCACTGACTTATATATGTACC 57.920 37.037 1.48 0.00 0.00 3.34
189 190 9.862149 TGACTCTTCCACTGACTTATATATGTA 57.138 33.333 1.48 0.00 0.00 2.29
190 191 8.768501 TGACTCTTCCACTGACTTATATATGT 57.231 34.615 1.07 1.07 0.00 2.29
193 194 8.696374 CCTTTGACTCTTCCACTGACTTATATA 58.304 37.037 0.00 0.00 0.00 0.86
194 195 7.365117 CCCTTTGACTCTTCCACTGACTTATAT 60.365 40.741 0.00 0.00 0.00 0.86
195 196 6.070767 CCCTTTGACTCTTCCACTGACTTATA 60.071 42.308 0.00 0.00 0.00 0.98
196 197 5.280215 CCCTTTGACTCTTCCACTGACTTAT 60.280 44.000 0.00 0.00 0.00 1.73
197 198 4.040461 CCCTTTGACTCTTCCACTGACTTA 59.960 45.833 0.00 0.00 0.00 2.24
198 199 3.181450 CCCTTTGACTCTTCCACTGACTT 60.181 47.826 0.00 0.00 0.00 3.01
199 200 2.370189 CCCTTTGACTCTTCCACTGACT 59.630 50.000 0.00 0.00 0.00 3.41
200 201 2.104963 ACCCTTTGACTCTTCCACTGAC 59.895 50.000 0.00 0.00 0.00 3.51
201 202 2.368875 GACCCTTTGACTCTTCCACTGA 59.631 50.000 0.00 0.00 0.00 3.41
202 203 2.104792 TGACCCTTTGACTCTTCCACTG 59.895 50.000 0.00 0.00 0.00 3.66
203 204 2.104963 GTGACCCTTTGACTCTTCCACT 59.895 50.000 0.00 0.00 0.00 4.00
204 205 2.495084 GTGACCCTTTGACTCTTCCAC 58.505 52.381 0.00 0.00 0.00 4.02
205 206 1.420138 GGTGACCCTTTGACTCTTCCA 59.580 52.381 0.00 0.00 0.00 3.53
206 207 1.420138 TGGTGACCCTTTGACTCTTCC 59.580 52.381 0.00 0.00 0.00 3.46
207 208 2.104963 AGTGGTGACCCTTTGACTCTTC 59.895 50.000 0.00 0.00 0.00 2.87
208 209 2.127708 AGTGGTGACCCTTTGACTCTT 58.872 47.619 0.00 0.00 0.00 2.85
209 210 1.807814 AGTGGTGACCCTTTGACTCT 58.192 50.000 0.00 0.00 0.00 3.24
210 211 2.633481 AGTAGTGGTGACCCTTTGACTC 59.367 50.000 0.00 0.00 0.00 3.36
211 212 2.368875 CAGTAGTGGTGACCCTTTGACT 59.631 50.000 0.00 0.00 0.00 3.41
212 213 2.367567 TCAGTAGTGGTGACCCTTTGAC 59.632 50.000 0.00 0.00 0.00 3.18
213 214 2.632996 CTCAGTAGTGGTGACCCTTTGA 59.367 50.000 0.00 3.57 0.00 2.69
214 215 2.289694 CCTCAGTAGTGGTGACCCTTTG 60.290 54.545 0.00 0.00 0.00 2.77
215 216 1.978580 CCTCAGTAGTGGTGACCCTTT 59.021 52.381 0.00 0.00 0.00 3.11
216 217 1.149288 TCCTCAGTAGTGGTGACCCTT 59.851 52.381 0.00 0.00 0.00 3.95
217 218 0.784495 TCCTCAGTAGTGGTGACCCT 59.216 55.000 0.00 0.00 0.00 4.34
218 219 1.757699 GATCCTCAGTAGTGGTGACCC 59.242 57.143 0.00 0.00 0.00 4.46
219 220 2.691011 GAGATCCTCAGTAGTGGTGACC 59.309 54.545 0.00 0.00 0.00 4.02
220 221 2.691011 GGAGATCCTCAGTAGTGGTGAC 59.309 54.545 0.00 0.00 31.08 3.67
221 222 2.358300 GGGAGATCCTCAGTAGTGGTGA 60.358 54.545 0.00 0.00 35.95 4.02
222 223 2.035632 GGGAGATCCTCAGTAGTGGTG 58.964 57.143 0.00 0.00 35.95 4.17
223 224 1.062810 GGGGAGATCCTCAGTAGTGGT 60.063 57.143 0.00 0.00 36.20 4.16
224 225 1.710816 GGGGAGATCCTCAGTAGTGG 58.289 60.000 0.00 0.00 36.20 4.00
225 226 1.710816 GGGGGAGATCCTCAGTAGTG 58.289 60.000 0.22 0.00 38.61 2.74
244 245 4.888239 TCAGACGACCCTTCTAAGATAAGG 59.112 45.833 0.00 0.00 42.73 2.69
245 246 5.009210 CCTCAGACGACCCTTCTAAGATAAG 59.991 48.000 0.00 0.00 0.00 1.73
246 247 4.888239 CCTCAGACGACCCTTCTAAGATAA 59.112 45.833 0.00 0.00 0.00 1.75
247 248 4.462133 CCTCAGACGACCCTTCTAAGATA 58.538 47.826 0.00 0.00 0.00 1.98
248 249 3.292460 CCTCAGACGACCCTTCTAAGAT 58.708 50.000 0.00 0.00 0.00 2.40
249 250 2.620886 CCCTCAGACGACCCTTCTAAGA 60.621 54.545 0.00 0.00 0.00 2.10
250 251 1.751924 CCCTCAGACGACCCTTCTAAG 59.248 57.143 0.00 0.00 0.00 2.18
251 252 1.076677 ACCCTCAGACGACCCTTCTAA 59.923 52.381 0.00 0.00 0.00 2.10
252 253 0.702902 ACCCTCAGACGACCCTTCTA 59.297 55.000 0.00 0.00 0.00 2.10
253 254 0.178929 AACCCTCAGACGACCCTTCT 60.179 55.000 0.00 0.00 0.00 2.85
254 255 0.246910 GAACCCTCAGACGACCCTTC 59.753 60.000 0.00 0.00 0.00 3.46
255 256 1.533469 CGAACCCTCAGACGACCCTT 61.533 60.000 0.00 0.00 0.00 3.95
256 257 1.977544 CGAACCCTCAGACGACCCT 60.978 63.158 0.00 0.00 0.00 4.34
257 258 2.572284 CGAACCCTCAGACGACCC 59.428 66.667 0.00 0.00 0.00 4.46
258 259 2.126031 GCGAACCCTCAGACGACC 60.126 66.667 0.00 0.00 0.00 4.79
259 260 2.126031 GGCGAACCCTCAGACGAC 60.126 66.667 0.00 0.00 0.00 4.34
260 261 3.744719 CGGCGAACCCTCAGACGA 61.745 66.667 0.00 0.00 0.00 4.20
269 270 3.428282 AATGAACCGCGGCGAACC 61.428 61.111 28.58 10.50 0.00 3.62
270 271 2.202298 CAATGAACCGCGGCGAAC 60.202 61.111 28.58 14.61 0.00 3.95
271 272 4.096558 GCAATGAACCGCGGCGAA 62.097 61.111 28.58 11.42 0.00 4.70
273 274 4.817063 CAGCAATGAACCGCGGCG 62.817 66.667 28.58 16.78 0.00 6.46
274 275 3.737172 ACAGCAATGAACCGCGGC 61.737 61.111 28.58 11.02 0.00 6.53
275 276 2.176546 CACAGCAATGAACCGCGG 59.823 61.111 26.86 26.86 0.00 6.46
276 277 2.462255 AAGCACAGCAATGAACCGCG 62.462 55.000 0.00 0.00 0.00 6.46
277 278 0.521291 TAAGCACAGCAATGAACCGC 59.479 50.000 0.00 0.00 0.00 5.68
278 279 1.535028 TGTAAGCACAGCAATGAACCG 59.465 47.619 0.00 0.00 0.00 4.44
279 280 2.933769 GTGTAAGCACAGCAATGAACC 58.066 47.619 0.00 0.00 44.64 3.62
290 291 2.418334 GGGTAGCCTAGTGTGTAAGCAC 60.418 54.545 2.95 0.00 45.44 4.40
291 292 1.829222 GGGTAGCCTAGTGTGTAAGCA 59.171 52.381 2.95 0.00 0.00 3.91
292 293 2.108970 AGGGTAGCCTAGTGTGTAAGC 58.891 52.381 12.99 0.00 0.00 3.09
293 294 4.024670 AGAAGGGTAGCCTAGTGTGTAAG 58.975 47.826 15.26 0.00 0.00 2.34
294 295 4.021916 GAGAAGGGTAGCCTAGTGTGTAA 58.978 47.826 15.26 0.00 0.00 2.41
295 296 3.626729 GGAGAAGGGTAGCCTAGTGTGTA 60.627 52.174 15.26 0.00 0.00 2.90
296 297 2.458620 GAGAAGGGTAGCCTAGTGTGT 58.541 52.381 15.26 0.00 0.00 3.72
297 298 1.757699 GGAGAAGGGTAGCCTAGTGTG 59.242 57.143 15.26 0.00 0.00 3.82
298 299 1.685491 CGGAGAAGGGTAGCCTAGTGT 60.685 57.143 15.26 0.00 0.00 3.55
299 300 1.033574 CGGAGAAGGGTAGCCTAGTG 58.966 60.000 15.26 0.00 0.00 2.74
300 301 0.924823 TCGGAGAAGGGTAGCCTAGT 59.075 55.000 15.26 4.08 0.00 2.57
301 302 3.823369 TCGGAGAAGGGTAGCCTAG 57.177 57.895 15.26 4.10 0.00 3.02
787 790 2.368875 TGACCCTTTGACTCTTCCACTC 59.631 50.000 0.00 0.00 0.00 3.51
938 942 0.693622 TGTGCAATAAACCCCTCCGA 59.306 50.000 0.00 0.00 0.00 4.55
1060 1064 1.556911 TCTTCAATGGGGTCTGCTCTC 59.443 52.381 0.00 0.00 0.00 3.20
1242 1248 4.346127 GTCCATATTTAGGACGGTTAGGGT 59.654 45.833 0.00 0.00 45.35 4.34
1380 1386 1.304282 GGCAAATGGGAGGCTCTCA 59.696 57.895 21.29 21.29 31.08 3.27
1689 1695 1.351017 CCTCTGTTGGCCTAAACCTCA 59.649 52.381 3.32 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.