Multiple sequence alignment - TraesCS7B01G050600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G050600 chr7B 100.000 3428 0 0 1 3428 52614754 52618181 0.000000e+00 6331.0
1 TraesCS7B01G050600 chr7B 83.039 283 27 8 3159 3428 408936062 408936336 1.590000e-58 237.0
2 TraesCS7B01G050600 chr7D 95.951 2272 52 8 511 2757 97952057 97954313 0.000000e+00 3650.0
3 TraesCS7B01G050600 chr7D 96.901 355 4 1 2815 3162 97954311 97954665 3.810000e-164 588.0
4 TraesCS7B01G050600 chr7D 92.453 106 8 0 387 492 97951966 97952071 5.930000e-33 152.0
5 TraesCS7B01G050600 chr4D 79.909 1319 205 35 1095 2374 480853320 480854617 0.000000e+00 913.0
6 TraesCS7B01G050600 chr4B 79.219 794 131 19 1121 1882 608826102 608826893 3.920000e-144 521.0
7 TraesCS7B01G050600 chr4B 82.381 420 66 5 1962 2374 608826914 608827332 3.250000e-95 359.0
8 TraesCS7B01G050600 chr2B 95.604 273 11 1 3157 3428 799144745 799144473 1.460000e-118 436.0
9 TraesCS7B01G050600 chr2B 91.429 280 13 2 3160 3428 368396808 368396529 1.160000e-99 374.0
10 TraesCS7B01G050600 chr1B 94.872 273 8 1 3156 3428 503873118 503873384 4.090000e-114 422.0
11 TraesCS7B01G050600 chr1B 93.458 214 12 2 3160 3372 663405115 663404903 1.990000e-82 316.0
12 TraesCS7B01G050600 chr1B 74.286 455 95 20 1959 2401 531006538 531006094 4.550000e-39 172.0
13 TraesCS7B01G050600 chr1B 74.897 243 56 5 2139 2378 637622861 637623101 4.680000e-19 106.0
14 TraesCS7B01G050600 chr1B 82.883 111 19 0 1139 1249 559332746 559332856 2.180000e-17 100.0
15 TraesCS7B01G050600 chr1B 85.227 88 13 0 1133 1220 531012815 531012728 1.310000e-14 91.6
16 TraesCS7B01G050600 chr1B 70.492 427 114 10 1965 2385 637524238 637523818 2.840000e-11 80.5
17 TraesCS7B01G050600 chrUn 89.860 286 17 6 3154 3428 42368422 42368138 1.170000e-94 357.0
18 TraesCS7B01G050600 chr2A 84.615 286 22 13 3157 3428 777753635 777753912 7.290000e-67 265.0
19 TraesCS7B01G050600 chr3B 83.333 282 25 9 3161 3428 778242546 778242819 1.230000e-59 241.0
20 TraesCS7B01G050600 chr2D 81.560 282 35 14 3158 3428 352982541 352982266 2.070000e-52 217.0
21 TraesCS7B01G050600 chr1A 75.108 462 94 19 1952 2401 493541991 493541539 2.700000e-46 196.0
22 TraesCS7B01G050600 chr1A 71.701 576 120 26 1133 1676 493542786 493542222 1.670000e-23 121.0
23 TraesCS7B01G050600 chr1A 72.143 420 99 10 1965 2378 554222679 554223086 1.010000e-20 111.0
24 TraesCS7B01G050600 chr1D 74.359 312 74 6 2070 2378 462488779 462489087 9.990000e-26 128.0
25 TraesCS7B01G050600 chr1D 72.019 411 102 11 1965 2368 462396509 462396913 3.620000e-20 110.0
26 TraesCS7B01G050600 chr1D 85.185 81 11 1 1141 1220 391679230 391679310 7.880000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G050600 chr7B 52614754 52618181 3427 False 6331.000000 6331 100.000000 1 3428 1 chr7B.!!$F1 3427
1 TraesCS7B01G050600 chr7D 97951966 97954665 2699 False 1463.333333 3650 95.101667 387 3162 3 chr7D.!!$F1 2775
2 TraesCS7B01G050600 chr4D 480853320 480854617 1297 False 913.000000 913 79.909000 1095 2374 1 chr4D.!!$F1 1279
3 TraesCS7B01G050600 chr4B 608826102 608827332 1230 False 440.000000 521 80.800000 1121 2374 2 chr4B.!!$F1 1253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 953 0.105039 GCATCGGGGAGGTTCACTAG 59.895 60.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2801 2862 0.449786 TGGAAACGTGTTGCAGTGTG 59.55 50.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.796866 ACTGTCCTCTTGTAGCCCT 57.203 52.632 0.00 0.00 0.00 5.19
19 20 2.031495 ACTGTCCTCTTGTAGCCCTT 57.969 50.000 0.00 0.00 0.00 3.95
20 21 2.339769 ACTGTCCTCTTGTAGCCCTTT 58.660 47.619 0.00 0.00 0.00 3.11
21 22 2.711547 ACTGTCCTCTTGTAGCCCTTTT 59.288 45.455 0.00 0.00 0.00 2.27
22 23 3.138468 ACTGTCCTCTTGTAGCCCTTTTT 59.862 43.478 0.00 0.00 0.00 1.94
56 57 5.975410 TTTGTTGCGGTTTTCTATTTTGG 57.025 34.783 0.00 0.00 0.00 3.28
57 58 4.657436 TGTTGCGGTTTTCTATTTTGGT 57.343 36.364 0.00 0.00 0.00 3.67
58 59 5.012328 TGTTGCGGTTTTCTATTTTGGTT 57.988 34.783 0.00 0.00 0.00 3.67
59 60 5.420409 TGTTGCGGTTTTCTATTTTGGTTT 58.580 33.333 0.00 0.00 0.00 3.27
60 61 5.520649 TGTTGCGGTTTTCTATTTTGGTTTC 59.479 36.000 0.00 0.00 0.00 2.78
61 62 5.523438 TGCGGTTTTCTATTTTGGTTTCT 57.477 34.783 0.00 0.00 0.00 2.52
62 63 5.908341 TGCGGTTTTCTATTTTGGTTTCTT 58.092 33.333 0.00 0.00 0.00 2.52
63 64 6.342111 TGCGGTTTTCTATTTTGGTTTCTTT 58.658 32.000 0.00 0.00 0.00 2.52
64 65 6.256757 TGCGGTTTTCTATTTTGGTTTCTTTG 59.743 34.615 0.00 0.00 0.00 2.77
65 66 6.256975 GCGGTTTTCTATTTTGGTTTCTTTGT 59.743 34.615 0.00 0.00 0.00 2.83
66 67 7.201574 GCGGTTTTCTATTTTGGTTTCTTTGTT 60.202 33.333 0.00 0.00 0.00 2.83
67 68 8.113675 CGGTTTTCTATTTTGGTTTCTTTGTTG 58.886 33.333 0.00 0.00 0.00 3.33
68 69 8.941977 GGTTTTCTATTTTGGTTTCTTTGTTGT 58.058 29.630 0.00 0.00 0.00 3.32
71 72 9.495572 TTTCTATTTTGGTTTCTTTGTTGTTGT 57.504 25.926 0.00 0.00 0.00 3.32
99 100 5.922739 ATTTTCGCTTTTCATTTGTTCCC 57.077 34.783 0.00 0.00 0.00 3.97
100 101 4.664150 TTTCGCTTTTCATTTGTTCCCT 57.336 36.364 0.00 0.00 0.00 4.20
101 102 4.664150 TTCGCTTTTCATTTGTTCCCTT 57.336 36.364 0.00 0.00 0.00 3.95
102 103 4.664150 TCGCTTTTCATTTGTTCCCTTT 57.336 36.364 0.00 0.00 0.00 3.11
103 104 5.017294 TCGCTTTTCATTTGTTCCCTTTT 57.983 34.783 0.00 0.00 0.00 2.27
104 105 5.423886 TCGCTTTTCATTTGTTCCCTTTTT 58.576 33.333 0.00 0.00 0.00 1.94
128 129 8.439993 TTTTCCTGGCCTTATTGTTTTTAAAC 57.560 30.769 3.32 0.00 39.33 2.01
129 130 6.732896 TCCTGGCCTTATTGTTTTTAAACA 57.267 33.333 3.32 4.02 46.35 2.83
151 152 9.730705 AAACACTTCTGGATGATATATATGGTG 57.269 33.333 0.00 0.00 0.00 4.17
152 153 8.670521 ACACTTCTGGATGATATATATGGTGA 57.329 34.615 0.00 0.00 0.00 4.02
153 154 9.104713 ACACTTCTGGATGATATATATGGTGAA 57.895 33.333 0.00 0.00 0.00 3.18
154 155 9.376075 CACTTCTGGATGATATATATGGTGAAC 57.624 37.037 0.00 0.00 0.00 3.18
155 156 9.104713 ACTTCTGGATGATATATATGGTGAACA 57.895 33.333 0.00 0.00 0.00 3.18
171 172 7.897575 TGGTGAACATTATTTTAAATGCACC 57.102 32.000 14.40 14.40 43.32 5.01
172 173 7.445121 TGGTGAACATTATTTTAAATGCACCA 58.555 30.769 17.62 17.62 46.43 4.17
173 174 7.933577 TGGTGAACATTATTTTAAATGCACCAA 59.066 29.630 18.53 8.86 46.07 3.67
174 175 8.778358 GGTGAACATTATTTTAAATGCACCAAA 58.222 29.630 15.54 0.00 42.96 3.28
185 186 9.912634 TTTTAAATGCACCAAATGTTTTTCAAA 57.087 22.222 0.00 0.00 0.00 2.69
189 190 7.798596 ATGCACCAAATGTTTTTCAAATACA 57.201 28.000 0.00 0.00 0.00 2.29
190 191 7.798596 TGCACCAAATGTTTTTCAAATACAT 57.201 28.000 0.69 0.69 34.14 2.29
191 192 7.637229 TGCACCAAATGTTTTTCAAATACATG 58.363 30.769 6.94 0.00 33.10 3.21
192 193 7.281774 TGCACCAAATGTTTTTCAAATACATGT 59.718 29.630 6.94 2.69 33.10 3.21
193 194 8.127954 GCACCAAATGTTTTTCAAATACATGTT 58.872 29.630 2.30 2.48 33.10 2.71
237 238 9.691362 ACTTTTTAATAAATGCACGATGAACTT 57.309 25.926 0.00 0.00 0.00 2.66
242 243 9.906660 TTAATAAATGCACGATGAACTTTTTCT 57.093 25.926 0.00 0.00 32.36 2.52
243 244 8.816640 AATAAATGCACGATGAACTTTTTCTT 57.183 26.923 0.00 0.00 32.36 2.52
244 245 9.906660 AATAAATGCACGATGAACTTTTTCTTA 57.093 25.926 0.00 0.00 32.36 2.10
245 246 9.906660 ATAAATGCACGATGAACTTTTTCTTAA 57.093 25.926 0.00 0.00 32.36 1.85
246 247 8.641499 AAATGCACGATGAACTTTTTCTTAAA 57.359 26.923 0.00 0.00 32.36 1.52
247 248 8.641499 AATGCACGATGAACTTTTTCTTAAAA 57.359 26.923 0.00 0.00 32.36 1.52
248 249 8.816640 ATGCACGATGAACTTTTTCTTAAAAT 57.183 26.923 0.00 0.00 33.05 1.82
249 250 9.906660 ATGCACGATGAACTTTTTCTTAAAATA 57.093 25.926 0.00 0.00 33.05 1.40
250 251 9.906660 TGCACGATGAACTTTTTCTTAAAATAT 57.093 25.926 0.00 0.00 33.05 1.28
260 261 9.051679 ACTTTTTCTTAAAATATTTGGCACACC 57.948 29.630 0.39 0.00 32.88 4.16
261 262 9.271828 CTTTTTCTTAAAATATTTGGCACACCT 57.728 29.630 0.39 0.00 32.88 4.00
262 263 9.620259 TTTTTCTTAAAATATTTGGCACACCTT 57.380 25.926 0.39 0.00 39.29 3.50
263 264 9.620259 TTTTCTTAAAATATTTGGCACACCTTT 57.380 25.926 0.39 0.00 39.29 3.11
264 265 9.620259 TTTCTTAAAATATTTGGCACACCTTTT 57.380 25.926 0.39 0.00 39.29 2.27
266 267 9.699703 TCTTAAAATATTTGGCACACCTTTTAC 57.300 29.630 0.39 0.00 39.29 2.01
267 268 8.522178 TTAAAATATTTGGCACACCTTTTACG 57.478 30.769 0.39 0.00 39.29 3.18
268 269 5.715434 AATATTTGGCACACCTTTTACGT 57.285 34.783 0.00 0.00 39.29 3.57
269 270 2.853731 TTTGGCACACCTTTTACGTG 57.146 45.000 0.00 0.00 39.29 4.49
270 271 1.752683 TTGGCACACCTTTTACGTGT 58.247 45.000 0.00 0.00 45.21 4.49
271 272 1.752683 TGGCACACCTTTTACGTGTT 58.247 45.000 0.00 0.00 42.49 3.32
272 273 1.671845 TGGCACACCTTTTACGTGTTC 59.328 47.619 0.00 0.00 42.49 3.18
273 274 1.002142 GGCACACCTTTTACGTGTTCC 60.002 52.381 0.00 0.00 42.49 3.62
274 275 1.671845 GCACACCTTTTACGTGTTCCA 59.328 47.619 0.00 0.00 42.49 3.53
275 276 2.097791 GCACACCTTTTACGTGTTCCAA 59.902 45.455 0.00 0.00 42.49 3.53
276 277 3.427773 GCACACCTTTTACGTGTTCCAAA 60.428 43.478 0.00 0.00 42.49 3.28
277 278 4.735283 GCACACCTTTTACGTGTTCCAAAT 60.735 41.667 0.00 0.00 42.49 2.32
278 279 5.505985 GCACACCTTTTACGTGTTCCAAATA 60.506 40.000 0.00 0.00 42.49 1.40
279 280 6.496571 CACACCTTTTACGTGTTCCAAATAA 58.503 36.000 0.00 0.00 42.49 1.40
280 281 6.973474 CACACCTTTTACGTGTTCCAAATAAA 59.027 34.615 0.00 0.00 42.49 1.40
281 282 7.650104 CACACCTTTTACGTGTTCCAAATAAAT 59.350 33.333 0.00 0.00 42.49 1.40
282 283 7.863877 ACACCTTTTACGTGTTCCAAATAAATC 59.136 33.333 0.00 0.00 41.66 2.17
283 284 7.863375 CACCTTTTACGTGTTCCAAATAAATCA 59.137 33.333 0.00 0.00 0.00 2.57
284 285 8.079809 ACCTTTTACGTGTTCCAAATAAATCAG 58.920 33.333 0.00 0.00 0.00 2.90
285 286 8.293867 CCTTTTACGTGTTCCAAATAAATCAGA 58.706 33.333 0.00 0.00 0.00 3.27
286 287 9.113876 CTTTTACGTGTTCCAAATAAATCAGAC 57.886 33.333 0.00 0.00 0.00 3.51
287 288 7.731882 TTACGTGTTCCAAATAAATCAGACA 57.268 32.000 0.00 0.00 0.00 3.41
288 289 6.627395 ACGTGTTCCAAATAAATCAGACAA 57.373 33.333 0.00 0.00 0.00 3.18
289 290 7.033530 ACGTGTTCCAAATAAATCAGACAAA 57.966 32.000 0.00 0.00 0.00 2.83
290 291 7.657336 ACGTGTTCCAAATAAATCAGACAAAT 58.343 30.769 0.00 0.00 0.00 2.32
291 292 8.141268 ACGTGTTCCAAATAAATCAGACAAATT 58.859 29.630 0.00 0.00 0.00 1.82
292 293 8.977505 CGTGTTCCAAATAAATCAGACAAATTT 58.022 29.630 0.00 0.00 0.00 1.82
294 295 9.829507 TGTTCCAAATAAATCAGACAAATTTGT 57.170 25.926 23.49 23.49 45.65 2.83
357 358 2.468532 AAAACTGAGCAAACCGAACG 57.531 45.000 0.00 0.00 0.00 3.95
358 359 1.658994 AAACTGAGCAAACCGAACGA 58.341 45.000 0.00 0.00 0.00 3.85
359 360 1.658994 AACTGAGCAAACCGAACGAA 58.341 45.000 0.00 0.00 0.00 3.85
360 361 1.658994 ACTGAGCAAACCGAACGAAA 58.341 45.000 0.00 0.00 0.00 3.46
361 362 2.011222 ACTGAGCAAACCGAACGAAAA 58.989 42.857 0.00 0.00 0.00 2.29
362 363 2.420722 ACTGAGCAAACCGAACGAAAAA 59.579 40.909 0.00 0.00 0.00 1.94
384 385 8.959734 AAAAATTGTTATAACCGAAGTACAGC 57.040 30.769 13.01 0.00 0.00 4.40
385 386 6.673154 AATTGTTATAACCGAAGTACAGCC 57.327 37.500 13.01 0.00 0.00 4.85
399 400 1.867363 ACAGCCTCGGGAAGAAGTAT 58.133 50.000 0.00 0.00 0.00 2.12
400 401 1.757699 ACAGCCTCGGGAAGAAGTATC 59.242 52.381 0.00 0.00 0.00 2.24
457 458 2.433318 GTGTCTCGCAGTCCTGGC 60.433 66.667 0.00 0.00 0.00 4.85
484 485 1.271379 GGTTTTGAGGACCAGCTAGCA 60.271 52.381 18.83 0.00 37.14 3.49
488 489 4.568072 TTTGAGGACCAGCTAGCAATAA 57.432 40.909 18.83 0.00 0.00 1.40
489 490 4.568072 TTGAGGACCAGCTAGCAATAAA 57.432 40.909 18.83 0.00 0.00 1.40
490 491 4.568072 TGAGGACCAGCTAGCAATAAAA 57.432 40.909 18.83 0.00 0.00 1.52
491 492 4.917385 TGAGGACCAGCTAGCAATAAAAA 58.083 39.130 18.83 0.00 0.00 1.94
492 493 4.943705 TGAGGACCAGCTAGCAATAAAAAG 59.056 41.667 18.83 0.00 0.00 2.27
493 494 4.923415 AGGACCAGCTAGCAATAAAAAGT 58.077 39.130 18.83 1.68 0.00 2.66
494 495 4.702131 AGGACCAGCTAGCAATAAAAAGTG 59.298 41.667 18.83 2.51 0.00 3.16
495 496 4.459337 GGACCAGCTAGCAATAAAAAGTGT 59.541 41.667 18.83 0.00 0.00 3.55
496 497 5.392057 GGACCAGCTAGCAATAAAAAGTGTC 60.392 44.000 18.83 7.36 0.00 3.67
497 498 5.316987 ACCAGCTAGCAATAAAAAGTGTCT 58.683 37.500 18.83 0.00 0.00 3.41
498 499 5.412904 ACCAGCTAGCAATAAAAAGTGTCTC 59.587 40.000 18.83 0.00 0.00 3.36
499 500 5.412594 CCAGCTAGCAATAAAAAGTGTCTCA 59.587 40.000 18.83 0.00 0.00 3.27
500 501 6.072508 CCAGCTAGCAATAAAAAGTGTCTCAA 60.073 38.462 18.83 0.00 0.00 3.02
501 502 7.362662 CAGCTAGCAATAAAAAGTGTCTCAAA 58.637 34.615 18.83 0.00 0.00 2.69
502 503 7.862372 CAGCTAGCAATAAAAAGTGTCTCAAAA 59.138 33.333 18.83 0.00 0.00 2.44
503 504 8.413229 AGCTAGCAATAAAAAGTGTCTCAAAAA 58.587 29.630 18.83 0.00 0.00 1.94
504 505 8.694394 GCTAGCAATAAAAAGTGTCTCAAAAAG 58.306 33.333 10.63 0.00 0.00 2.27
505 506 9.950680 CTAGCAATAAAAAGTGTCTCAAAAAGA 57.049 29.630 0.00 0.00 0.00 2.52
507 508 9.651913 AGCAATAAAAAGTGTCTCAAAAAGAAA 57.348 25.926 0.00 0.00 35.21 2.52
539 540 0.179119 AAAATCCCTACGCCGTCTCG 60.179 55.000 0.00 0.00 0.00 4.04
541 542 0.822532 AATCCCTACGCCGTCTCGAT 60.823 55.000 0.00 0.00 0.00 3.59
543 544 2.331805 CCTACGCCGTCTCGATGG 59.668 66.667 0.00 0.69 40.47 3.51
546 547 0.235144 CTACGCCGTCTCGATGGTAG 59.765 60.000 0.00 4.60 39.68 3.18
548 549 2.835705 CGCCGTCTCGATGGTAGCT 61.836 63.158 7.00 0.00 39.68 3.32
550 551 0.179108 GCCGTCTCGATGGTAGCTTT 60.179 55.000 7.00 0.00 39.68 3.51
564 565 0.460311 AGCTTTACCATCGTCTCCCG 59.540 55.000 0.00 0.00 38.13 5.14
598 599 2.768527 CTGTTCCTCAATCCCAGCTAGA 59.231 50.000 0.00 0.00 0.00 2.43
599 600 3.181329 TGTTCCTCAATCCCAGCTAGAA 58.819 45.455 0.00 0.00 0.00 2.10
600 601 3.587061 TGTTCCTCAATCCCAGCTAGAAA 59.413 43.478 0.00 0.00 0.00 2.52
736 738 5.346281 CCTCTTGTTCATTCTCGTCAACTAC 59.654 44.000 0.00 0.00 0.00 2.73
754 756 3.023479 CAGATCTCGCGCGCAGAG 61.023 66.667 32.47 32.47 37.09 3.35
762 764 2.637025 GCGCGCAGAGGAAAAACA 59.363 55.556 29.10 0.00 0.00 2.83
801 803 4.216472 GTCTTTTCTTTCCTTAGCTGTGGG 59.784 45.833 0.00 0.00 0.00 4.61
817 819 0.535335 TGGGCAACACTAGATCCGTC 59.465 55.000 0.00 0.00 39.74 4.79
858 879 2.218953 TAAGAATTACTGCCCGCGAG 57.781 50.000 8.23 0.00 0.00 5.03
924 949 0.982852 ATCTGCATCGGGGAGGTTCA 60.983 55.000 0.00 0.00 35.32 3.18
928 953 0.105039 GCATCGGGGAGGTTCACTAG 59.895 60.000 0.00 0.00 0.00 2.57
970 995 5.116983 CGTGTTGATTTTATTGCAGACCAAC 59.883 40.000 0.00 0.00 35.99 3.77
992 1017 2.103432 TGACTGCTTCGAGTTTGGGTAA 59.897 45.455 0.00 0.00 0.00 2.85
1031 1056 4.763793 CAGAAAAAGAGAGGAAGATTGCCA 59.236 41.667 0.00 0.00 0.00 4.92
1054 1079 7.113965 GCCAATATCATGCGTTAATCTCAAAAG 59.886 37.037 0.00 0.00 0.00 2.27
1075 1100 4.251169 AGGAGAGGGGAATATTGCCATTA 58.749 43.478 25.37 0.00 40.96 1.90
1326 1354 1.918293 ATCAAGACCCGGCTCCACA 60.918 57.895 0.00 0.00 0.00 4.17
1347 1375 1.077429 GGTGTTCTCATGCTCCCCC 60.077 63.158 0.00 0.00 0.00 5.40
1485 1519 3.875727 CAGCTTACTACATCTGCAATGCT 59.124 43.478 6.82 0.00 0.00 3.79
1522 1556 1.597027 CGTCTGCCACCTTTCCGTT 60.597 57.895 0.00 0.00 0.00 4.44
1526 1560 1.418637 TCTGCCACCTTTCCGTTACTT 59.581 47.619 0.00 0.00 0.00 2.24
1770 1825 3.317993 GTCTACCACCTGTGTTTGCAAAT 59.682 43.478 16.21 0.00 0.00 2.32
1920 1975 3.326297 TGTACTCATCCACACCATTGTCA 59.674 43.478 0.00 0.00 31.66 3.58
2038 2096 5.854157 GATATAATCGTAATGGTGGTTGCG 58.146 41.667 0.00 0.00 38.32 4.85
2297 2358 4.003648 GAGACCATTCTTTCAATCACCGT 58.996 43.478 0.00 0.00 29.47 4.83
2366 2427 0.773644 TTTGAAGAGAGCCTTGCCCT 59.226 50.000 0.00 0.00 34.68 5.19
2386 2447 3.181477 CCTGGTGCATGAAACAGTTGAAA 60.181 43.478 17.84 0.00 0.00 2.69
2523 2584 3.746045 TTTGTAAGAGCAGTCGTTCCT 57.254 42.857 0.00 0.00 0.00 3.36
2560 2621 7.303261 AGATGTTGATTATCATTTAGCATGCG 58.697 34.615 13.01 0.00 0.00 4.73
2578 2639 5.348451 GCATGCGGAAGTTATTTCATGTTTT 59.652 36.000 0.00 0.00 37.54 2.43
2623 2684 4.697352 GCACACATTGATCCTTCACTTAGT 59.303 41.667 0.00 0.00 0.00 2.24
2751 2812 7.599621 TCTTATCAAAACAATCGAGACCGTAAA 59.400 33.333 0.00 0.00 37.05 2.01
2754 2815 4.939509 AAACAATCGAGACCGTAAATGG 57.060 40.909 0.00 0.00 37.05 3.16
2756 2817 3.934068 ACAATCGAGACCGTAAATGGTT 58.066 40.909 0.00 0.00 44.01 3.67
2757 2818 5.075858 ACAATCGAGACCGTAAATGGTTA 57.924 39.130 0.00 0.00 44.01 2.85
2758 2819 5.667466 ACAATCGAGACCGTAAATGGTTAT 58.333 37.500 0.00 0.00 44.01 1.89
2759 2820 6.110707 ACAATCGAGACCGTAAATGGTTATT 58.889 36.000 0.00 0.00 44.01 1.40
2760 2821 7.267128 ACAATCGAGACCGTAAATGGTTATTA 58.733 34.615 0.00 0.00 44.01 0.98
2761 2822 7.929785 ACAATCGAGACCGTAAATGGTTATTAT 59.070 33.333 0.00 0.00 44.01 1.28
2762 2823 9.414295 CAATCGAGACCGTAAATGGTTATTATA 57.586 33.333 0.00 0.00 44.01 0.98
2763 2824 9.635520 AATCGAGACCGTAAATGGTTATTATAG 57.364 33.333 0.00 0.00 44.01 1.31
2764 2825 8.394971 TCGAGACCGTAAATGGTTATTATAGA 57.605 34.615 0.00 0.00 44.01 1.98
2765 2826 8.292448 TCGAGACCGTAAATGGTTATTATAGAC 58.708 37.037 0.00 0.00 44.01 2.59
2766 2827 7.540055 CGAGACCGTAAATGGTTATTATAGACC 59.460 40.741 0.00 0.00 44.01 3.85
2778 2839 9.890629 TGGTTATTATAGACCATGAATCATAGC 57.109 33.333 0.00 0.00 40.85 2.97
2779 2840 9.890629 GGTTATTATAGACCATGAATCATAGCA 57.109 33.333 0.00 0.00 35.95 3.49
2783 2844 6.676990 ATAGACCATGAATCATAGCAGACA 57.323 37.500 0.00 0.00 0.00 3.41
2784 2845 5.363562 AGACCATGAATCATAGCAGACAA 57.636 39.130 0.00 0.00 0.00 3.18
2785 2846 5.938279 AGACCATGAATCATAGCAGACAAT 58.062 37.500 0.00 0.00 0.00 2.71
2786 2847 5.763698 AGACCATGAATCATAGCAGACAATG 59.236 40.000 0.00 0.00 0.00 2.82
2787 2848 4.825634 ACCATGAATCATAGCAGACAATGG 59.174 41.667 0.00 0.00 0.00 3.16
2788 2849 4.825634 CCATGAATCATAGCAGACAATGGT 59.174 41.667 0.00 0.00 43.56 3.55
2789 2850 5.048921 CCATGAATCATAGCAGACAATGGTC 60.049 44.000 0.00 0.00 44.66 4.02
2790 2851 5.101648 TGAATCATAGCAGACAATGGTCA 57.898 39.130 2.34 0.00 46.80 4.02
2791 2852 4.877823 TGAATCATAGCAGACAATGGTCAC 59.122 41.667 2.34 0.00 46.80 3.67
2792 2853 3.979101 TCATAGCAGACAATGGTCACA 57.021 42.857 2.34 0.00 46.80 3.58
2793 2854 4.492494 TCATAGCAGACAATGGTCACAT 57.508 40.909 2.34 0.00 46.80 3.21
2794 2855 5.612725 TCATAGCAGACAATGGTCACATA 57.387 39.130 2.34 0.00 46.80 2.29
2795 2856 5.359756 TCATAGCAGACAATGGTCACATAC 58.640 41.667 2.34 0.00 46.80 2.39
2796 2857 3.701205 AGCAGACAATGGTCACATACA 57.299 42.857 2.34 0.00 46.80 2.29
2797 2858 4.019792 AGCAGACAATGGTCACATACAA 57.980 40.909 2.34 0.00 46.80 2.41
2798 2859 4.397420 AGCAGACAATGGTCACATACAAA 58.603 39.130 2.34 0.00 46.80 2.83
2799 2860 5.012239 AGCAGACAATGGTCACATACAAAT 58.988 37.500 2.34 0.00 46.80 2.32
2800 2861 5.097529 GCAGACAATGGTCACATACAAATG 58.902 41.667 2.34 0.00 46.80 2.32
2801 2862 5.097529 CAGACAATGGTCACATACAAATGC 58.902 41.667 2.34 0.00 46.80 3.56
2802 2863 4.766373 AGACAATGGTCACATACAAATGCA 59.234 37.500 2.34 0.00 46.80 3.96
2803 2864 4.808558 ACAATGGTCACATACAAATGCAC 58.191 39.130 0.00 0.00 35.94 4.57
2804 2865 4.280425 ACAATGGTCACATACAAATGCACA 59.720 37.500 0.00 0.00 35.94 4.57
2805 2866 3.913548 TGGTCACATACAAATGCACAC 57.086 42.857 0.00 0.00 36.50 3.82
2806 2867 3.485394 TGGTCACATACAAATGCACACT 58.515 40.909 0.00 0.00 36.50 3.55
2807 2868 3.252944 TGGTCACATACAAATGCACACTG 59.747 43.478 0.00 0.00 36.50 3.66
2808 2869 3.236816 GTCACATACAAATGCACACTGC 58.763 45.455 0.00 0.00 45.29 4.40
2970 3031 6.863126 GTGTTTCTGCATGTATAAAGTGCTTT 59.137 34.615 2.60 2.60 39.52 3.51
3071 3132 7.563724 TGTTTAAGTGGGTTCTATTAGGTCT 57.436 36.000 0.00 0.00 0.00 3.85
3150 3218 7.425606 AGCTTCTGATCGTTTAAACATTTGTT 58.574 30.769 18.07 0.00 40.50 2.83
3166 3234 9.582648 AAACATTTGTTTTAGTATGTACTCCCT 57.417 29.630 2.88 0.00 45.07 4.20
3167 3235 8.788325 ACATTTGTTTTAGTATGTACTCCCTC 57.212 34.615 0.00 0.00 37.73 4.30
3168 3236 7.827729 ACATTTGTTTTAGTATGTACTCCCTCC 59.172 37.037 0.00 0.00 37.73 4.30
3169 3237 5.587388 TGTTTTAGTATGTACTCCCTCCG 57.413 43.478 0.00 0.00 37.73 4.63
3170 3238 5.018809 TGTTTTAGTATGTACTCCCTCCGT 58.981 41.667 0.00 0.00 37.73 4.69
3171 3239 5.126061 TGTTTTAGTATGTACTCCCTCCGTC 59.874 44.000 0.00 0.00 37.73 4.79
3172 3240 2.361643 AGTATGTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
3173 3241 1.133544 AGTATGTACTCCCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
3174 3242 0.179009 TATGTACTCCCTCCGTCCCG 60.179 60.000 0.00 0.00 0.00 5.14
3175 3243 1.929860 ATGTACTCCCTCCGTCCCGA 61.930 60.000 0.00 0.00 0.00 5.14
3176 3244 1.379044 GTACTCCCTCCGTCCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
3177 3245 0.967380 GTACTCCCTCCGTCCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
3178 3246 0.251742 TACTCCCTCCGTCCCGAAAA 60.252 55.000 0.00 0.00 0.00 2.29
3179 3247 1.123246 ACTCCCTCCGTCCCGAAAAA 61.123 55.000 0.00 0.00 0.00 1.94
3180 3248 0.672711 CTCCCTCCGTCCCGAAAAAC 60.673 60.000 0.00 0.00 0.00 2.43
3181 3249 1.071814 CCCTCCGTCCCGAAAAACA 59.928 57.895 0.00 0.00 0.00 2.83
3182 3250 0.322187 CCCTCCGTCCCGAAAAACAT 60.322 55.000 0.00 0.00 0.00 2.71
3183 3251 0.802494 CCTCCGTCCCGAAAAACATG 59.198 55.000 0.00 0.00 0.00 3.21
3184 3252 1.519408 CTCCGTCCCGAAAAACATGT 58.481 50.000 0.00 0.00 0.00 3.21
3185 3253 1.463444 CTCCGTCCCGAAAAACATGTC 59.537 52.381 0.00 0.00 0.00 3.06
3186 3254 0.165079 CCGTCCCGAAAAACATGTCG 59.835 55.000 0.00 0.00 37.01 4.35
3187 3255 0.452122 CGTCCCGAAAAACATGTCGC 60.452 55.000 0.00 0.00 35.93 5.19
3188 3256 0.589223 GTCCCGAAAAACATGTCGCA 59.411 50.000 0.00 0.00 35.93 5.10
3189 3257 0.871722 TCCCGAAAAACATGTCGCAG 59.128 50.000 0.00 0.00 35.93 5.18
3190 3258 0.591170 CCCGAAAAACATGTCGCAGT 59.409 50.000 0.00 0.00 35.93 4.40
3191 3259 1.662876 CCCGAAAAACATGTCGCAGTG 60.663 52.381 0.00 0.00 35.93 3.66
3192 3260 1.662876 CCGAAAAACATGTCGCAGTGG 60.663 52.381 0.00 0.00 35.93 4.00
3193 3261 1.408422 GAAAAACATGTCGCAGTGGC 58.592 50.000 0.00 0.00 0.00 5.01
3194 3262 0.743688 AAAAACATGTCGCAGTGGCA 59.256 45.000 0.00 0.00 41.24 4.92
3195 3263 0.030638 AAAACATGTCGCAGTGGCAC 59.969 50.000 10.29 10.29 41.24 5.01
3196 3264 0.819259 AAACATGTCGCAGTGGCACT 60.819 50.000 15.88 15.88 41.24 4.40
3197 3265 0.819259 AACATGTCGCAGTGGCACTT 60.819 50.000 19.43 0.00 41.24 3.16
3198 3266 0.819259 ACATGTCGCAGTGGCACTTT 60.819 50.000 19.43 0.00 41.24 2.66
3199 3267 0.311790 CATGTCGCAGTGGCACTTTT 59.688 50.000 19.43 0.00 41.24 2.27
3200 3268 1.535028 CATGTCGCAGTGGCACTTTTA 59.465 47.619 19.43 2.67 41.24 1.52
3201 3269 1.890876 TGTCGCAGTGGCACTTTTAT 58.109 45.000 19.43 0.00 41.24 1.40
3202 3270 1.535028 TGTCGCAGTGGCACTTTTATG 59.465 47.619 19.43 8.52 41.24 1.90
3203 3271 1.804151 GTCGCAGTGGCACTTTTATGA 59.196 47.619 19.43 8.57 41.24 2.15
3204 3272 2.225491 GTCGCAGTGGCACTTTTATGAA 59.775 45.455 19.43 0.00 41.24 2.57
3205 3273 2.881513 TCGCAGTGGCACTTTTATGAAA 59.118 40.909 19.43 0.00 41.24 2.69
3206 3274 3.316588 TCGCAGTGGCACTTTTATGAAAA 59.683 39.130 19.43 0.00 41.24 2.29
3207 3275 4.022416 TCGCAGTGGCACTTTTATGAAAAT 60.022 37.500 19.43 0.00 41.24 1.82
3208 3276 4.324402 CGCAGTGGCACTTTTATGAAAATC 59.676 41.667 19.43 0.00 41.24 2.17
3209 3277 4.627035 GCAGTGGCACTTTTATGAAAATCC 59.373 41.667 19.43 0.00 40.72 3.01
3210 3278 5.170748 CAGTGGCACTTTTATGAAAATCCC 58.829 41.667 19.43 0.00 0.00 3.85
3211 3279 4.222810 AGTGGCACTTTTATGAAAATCCCC 59.777 41.667 15.88 0.00 0.00 4.81
3212 3280 4.222810 GTGGCACTTTTATGAAAATCCCCT 59.777 41.667 11.13 0.00 0.00 4.79
3213 3281 4.466015 TGGCACTTTTATGAAAATCCCCTC 59.534 41.667 0.00 0.00 0.00 4.30
3214 3282 4.466015 GGCACTTTTATGAAAATCCCCTCA 59.534 41.667 0.00 0.00 0.00 3.86
3215 3283 5.394553 GGCACTTTTATGAAAATCCCCTCAG 60.395 44.000 0.00 0.00 0.00 3.35
3216 3284 5.654497 CACTTTTATGAAAATCCCCTCAGC 58.346 41.667 0.00 0.00 0.00 4.26
3217 3285 4.399303 ACTTTTATGAAAATCCCCTCAGCG 59.601 41.667 0.00 0.00 0.00 5.18
3218 3286 3.924114 TTATGAAAATCCCCTCAGCGA 57.076 42.857 0.00 0.00 0.00 4.93
3219 3287 2.806945 ATGAAAATCCCCTCAGCGAA 57.193 45.000 0.00 0.00 0.00 4.70
3220 3288 2.806945 TGAAAATCCCCTCAGCGAAT 57.193 45.000 0.00 0.00 0.00 3.34
3221 3289 3.085952 TGAAAATCCCCTCAGCGAATT 57.914 42.857 0.00 0.00 0.00 2.17
3222 3290 3.016736 TGAAAATCCCCTCAGCGAATTC 58.983 45.455 0.00 0.00 0.00 2.17
3223 3291 2.058593 AAATCCCCTCAGCGAATTCC 57.941 50.000 0.00 0.00 0.00 3.01
3224 3292 0.183731 AATCCCCTCAGCGAATTCCC 59.816 55.000 0.00 0.00 0.00 3.97
3225 3293 2.044806 ATCCCCTCAGCGAATTCCCG 62.045 60.000 0.00 0.00 0.00 5.14
3226 3294 2.731571 CCCCTCAGCGAATTCCCGA 61.732 63.158 0.00 0.00 0.00 5.14
3227 3295 1.521681 CCCTCAGCGAATTCCCGAC 60.522 63.158 0.00 0.00 0.00 4.79
3228 3296 1.218047 CCTCAGCGAATTCCCGACA 59.782 57.895 0.00 0.00 0.00 4.35
3229 3297 1.084370 CCTCAGCGAATTCCCGACAC 61.084 60.000 0.00 0.00 0.00 3.67
3230 3298 0.389817 CTCAGCGAATTCCCGACACA 60.390 55.000 0.00 0.00 0.00 3.72
3231 3299 0.034198 TCAGCGAATTCCCGACACAA 59.966 50.000 0.00 0.00 0.00 3.33
3232 3300 0.165944 CAGCGAATTCCCGACACAAC 59.834 55.000 0.00 0.00 0.00 3.32
3233 3301 0.953960 AGCGAATTCCCGACACAACC 60.954 55.000 0.00 0.00 0.00 3.77
3234 3302 1.918868 GCGAATTCCCGACACAACCC 61.919 60.000 0.00 0.00 0.00 4.11
3235 3303 1.632046 CGAATTCCCGACACAACCCG 61.632 60.000 0.00 0.00 0.00 5.28
3236 3304 1.918868 GAATTCCCGACACAACCCGC 61.919 60.000 0.00 0.00 0.00 6.13
3237 3305 2.684192 AATTCCCGACACAACCCGCA 62.684 55.000 0.00 0.00 0.00 5.69
3238 3306 4.612412 TCCCGACACAACCCGCAC 62.612 66.667 0.00 0.00 0.00 5.34
3239 3307 4.619227 CCCGACACAACCCGCACT 62.619 66.667 0.00 0.00 0.00 4.40
3240 3308 3.041940 CCGACACAACCCGCACTC 61.042 66.667 0.00 0.00 0.00 3.51
3241 3309 3.041940 CGACACAACCCGCACTCC 61.042 66.667 0.00 0.00 0.00 3.85
3242 3310 2.668550 GACACAACCCGCACTCCC 60.669 66.667 0.00 0.00 0.00 4.30
3243 3311 3.168528 ACACAACCCGCACTCCCT 61.169 61.111 0.00 0.00 0.00 4.20
3244 3312 2.669569 CACAACCCGCACTCCCTG 60.670 66.667 0.00 0.00 0.00 4.45
3245 3313 3.953775 ACAACCCGCACTCCCTGG 61.954 66.667 0.00 0.00 0.00 4.45
3246 3314 3.953775 CAACCCGCACTCCCTGGT 61.954 66.667 0.00 0.00 0.00 4.00
3247 3315 3.637273 AACCCGCACTCCCTGGTC 61.637 66.667 0.00 0.00 0.00 4.02
3250 3318 4.436998 CCGCACTCCCTGGTCGTC 62.437 72.222 0.00 0.00 0.00 4.20
3251 3319 3.374402 CGCACTCCCTGGTCGTCT 61.374 66.667 0.00 0.00 0.00 4.18
3252 3320 2.574399 GCACTCCCTGGTCGTCTC 59.426 66.667 0.00 0.00 0.00 3.36
3253 3321 3.007973 GCACTCCCTGGTCGTCTCC 62.008 68.421 0.00 0.00 0.00 3.71
3254 3322 2.037527 ACTCCCTGGTCGTCTCCC 59.962 66.667 0.00 0.00 0.00 4.30
3255 3323 2.360980 CTCCCTGGTCGTCTCCCT 59.639 66.667 0.00 0.00 0.00 4.20
3256 3324 1.755008 CTCCCTGGTCGTCTCCCTC 60.755 68.421 0.00 0.00 0.00 4.30
3257 3325 3.141488 CCCTGGTCGTCTCCCTCG 61.141 72.222 0.00 0.00 0.00 4.63
3258 3326 3.827898 CCTGGTCGTCTCCCTCGC 61.828 72.222 0.00 0.00 0.00 5.03
3259 3327 2.752238 CTGGTCGTCTCCCTCGCT 60.752 66.667 0.00 0.00 0.00 4.93
3260 3328 2.750637 TGGTCGTCTCCCTCGCTC 60.751 66.667 0.00 0.00 0.00 5.03
3261 3329 3.878519 GGTCGTCTCCCTCGCTCG 61.879 72.222 0.00 0.00 0.00 5.03
3262 3330 3.126225 GTCGTCTCCCTCGCTCGT 61.126 66.667 0.00 0.00 0.00 4.18
3263 3331 2.818714 TCGTCTCCCTCGCTCGTC 60.819 66.667 0.00 0.00 0.00 4.20
3264 3332 2.820479 CGTCTCCCTCGCTCGTCT 60.820 66.667 0.00 0.00 0.00 4.18
3265 3333 2.815298 CGTCTCCCTCGCTCGTCTC 61.815 68.421 0.00 0.00 0.00 3.36
3266 3334 2.124653 TCTCCCTCGCTCGTCTCC 60.125 66.667 0.00 0.00 0.00 3.71
3267 3335 3.213402 CTCCCTCGCTCGTCTCCC 61.213 72.222 0.00 0.00 0.00 4.30
3268 3336 4.816984 TCCCTCGCTCGTCTCCCC 62.817 72.222 0.00 0.00 0.00 4.81
3269 3337 4.824515 CCCTCGCTCGTCTCCCCT 62.825 72.222 0.00 0.00 0.00 4.79
3270 3338 3.522731 CCTCGCTCGTCTCCCCTG 61.523 72.222 0.00 0.00 0.00 4.45
3271 3339 4.200283 CTCGCTCGTCTCCCCTGC 62.200 72.222 0.00 0.00 0.00 4.85
3383 3451 4.821589 CTCCACCGCGCTTCCCTC 62.822 72.222 5.56 0.00 0.00 4.30
3385 3453 4.821589 CCACCGCGCTTCCCTCTC 62.822 72.222 5.56 0.00 0.00 3.20
3386 3454 4.821589 CACCGCGCTTCCCTCTCC 62.822 72.222 5.56 0.00 0.00 3.71
3388 3456 3.775654 CCGCGCTTCCCTCTCCTT 61.776 66.667 5.56 0.00 0.00 3.36
3389 3457 2.510238 CGCGCTTCCCTCTCCTTG 60.510 66.667 5.56 0.00 0.00 3.61
3390 3458 2.665603 GCGCTTCCCTCTCCTTGT 59.334 61.111 0.00 0.00 0.00 3.16
3391 3459 1.003233 GCGCTTCCCTCTCCTTGTT 60.003 57.895 0.00 0.00 0.00 2.83
3392 3460 1.021920 GCGCTTCCCTCTCCTTGTTC 61.022 60.000 0.00 0.00 0.00 3.18
3393 3461 0.391793 CGCTTCCCTCTCCTTGTTCC 60.392 60.000 0.00 0.00 0.00 3.62
3394 3462 0.034960 GCTTCCCTCTCCTTGTTCCC 60.035 60.000 0.00 0.00 0.00 3.97
3395 3463 1.662686 CTTCCCTCTCCTTGTTCCCT 58.337 55.000 0.00 0.00 0.00 4.20
3396 3464 1.988846 CTTCCCTCTCCTTGTTCCCTT 59.011 52.381 0.00 0.00 0.00 3.95
3397 3465 3.182152 CTTCCCTCTCCTTGTTCCCTTA 58.818 50.000 0.00 0.00 0.00 2.69
3398 3466 3.508952 TCCCTCTCCTTGTTCCCTTAT 57.491 47.619 0.00 0.00 0.00 1.73
3399 3467 3.815507 TCCCTCTCCTTGTTCCCTTATT 58.184 45.455 0.00 0.00 0.00 1.40
3400 3468 3.780850 TCCCTCTCCTTGTTCCCTTATTC 59.219 47.826 0.00 0.00 0.00 1.75
3401 3469 3.432326 CCCTCTCCTTGTTCCCTTATTCG 60.432 52.174 0.00 0.00 0.00 3.34
3402 3470 3.197983 CCTCTCCTTGTTCCCTTATTCGT 59.802 47.826 0.00 0.00 0.00 3.85
3403 3471 4.323562 CCTCTCCTTGTTCCCTTATTCGTT 60.324 45.833 0.00 0.00 0.00 3.85
3404 3472 4.828829 TCTCCTTGTTCCCTTATTCGTTC 58.171 43.478 0.00 0.00 0.00 3.95
3405 3473 3.939592 CTCCTTGTTCCCTTATTCGTTCC 59.060 47.826 0.00 0.00 0.00 3.62
3406 3474 3.014623 CCTTGTTCCCTTATTCGTTCCC 58.985 50.000 0.00 0.00 0.00 3.97
3407 3475 2.793288 TGTTCCCTTATTCGTTCCCC 57.207 50.000 0.00 0.00 0.00 4.81
3408 3476 1.986631 TGTTCCCTTATTCGTTCCCCA 59.013 47.619 0.00 0.00 0.00 4.96
3409 3477 2.578940 TGTTCCCTTATTCGTTCCCCAT 59.421 45.455 0.00 0.00 0.00 4.00
3410 3478 2.949644 GTTCCCTTATTCGTTCCCCATG 59.050 50.000 0.00 0.00 0.00 3.66
3411 3479 1.493022 TCCCTTATTCGTTCCCCATGG 59.507 52.381 4.14 4.14 0.00 3.66
3412 3480 1.214424 CCCTTATTCGTTCCCCATGGT 59.786 52.381 11.73 0.00 0.00 3.55
3413 3481 2.297701 CCTTATTCGTTCCCCATGGTG 58.702 52.381 11.73 0.00 0.00 4.17
3414 3482 2.092646 CCTTATTCGTTCCCCATGGTGA 60.093 50.000 11.73 0.58 0.00 4.02
3415 3483 3.616219 CTTATTCGTTCCCCATGGTGAA 58.384 45.455 11.73 8.51 0.00 3.18
3416 3484 2.826674 ATTCGTTCCCCATGGTGAAT 57.173 45.000 13.08 9.62 0.00 2.57
3417 3485 2.122783 TTCGTTCCCCATGGTGAATC 57.877 50.000 13.08 6.26 0.00 2.52
3418 3486 0.988063 TCGTTCCCCATGGTGAATCA 59.012 50.000 13.08 0.04 0.00 2.57
3419 3487 1.094785 CGTTCCCCATGGTGAATCAC 58.905 55.000 13.08 4.51 0.00 3.06
3420 3488 1.094785 GTTCCCCATGGTGAATCACG 58.905 55.000 13.08 0.00 34.83 4.35
3421 3489 0.034574 TTCCCCATGGTGAATCACGG 60.035 55.000 11.73 1.72 34.83 4.94
3422 3490 1.453745 CCCCATGGTGAATCACGGG 60.454 63.158 15.27 15.27 34.83 5.28
3423 3491 1.607071 CCCATGGTGAATCACGGGA 59.393 57.895 16.72 0.00 35.50 5.14
3424 3492 0.034574 CCCATGGTGAATCACGGGAA 60.035 55.000 16.72 0.00 35.50 3.97
3425 3493 1.382522 CCATGGTGAATCACGGGAAG 58.617 55.000 2.57 0.00 34.83 3.46
3426 3494 1.382522 CATGGTGAATCACGGGAAGG 58.617 55.000 7.35 0.00 34.83 3.46
3427 3495 1.065491 CATGGTGAATCACGGGAAGGA 60.065 52.381 7.35 0.00 34.83 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.031495 AAGGGCTACAAGAGGACAGT 57.969 50.000 0.00 0.00 0.00 3.55
1 2 3.425162 AAAAGGGCTACAAGAGGACAG 57.575 47.619 0.00 0.00 0.00 3.51
2 3 3.876309 AAAAAGGGCTACAAGAGGACA 57.124 42.857 0.00 0.00 0.00 4.02
32 33 6.371825 ACCAAAATAGAAAACCGCAACAAAAA 59.628 30.769 0.00 0.00 0.00 1.94
33 34 5.875359 ACCAAAATAGAAAACCGCAACAAAA 59.125 32.000 0.00 0.00 0.00 2.44
34 35 5.420409 ACCAAAATAGAAAACCGCAACAAA 58.580 33.333 0.00 0.00 0.00 2.83
35 36 5.012328 ACCAAAATAGAAAACCGCAACAA 57.988 34.783 0.00 0.00 0.00 2.83
36 37 4.657436 ACCAAAATAGAAAACCGCAACA 57.343 36.364 0.00 0.00 0.00 3.33
37 38 5.751509 AGAAACCAAAATAGAAAACCGCAAC 59.248 36.000 0.00 0.00 0.00 4.17
38 39 5.908341 AGAAACCAAAATAGAAAACCGCAA 58.092 33.333 0.00 0.00 0.00 4.85
39 40 5.523438 AGAAACCAAAATAGAAAACCGCA 57.477 34.783 0.00 0.00 0.00 5.69
40 41 6.256975 ACAAAGAAACCAAAATAGAAAACCGC 59.743 34.615 0.00 0.00 0.00 5.68
41 42 7.764695 ACAAAGAAACCAAAATAGAAAACCG 57.235 32.000 0.00 0.00 0.00 4.44
42 43 8.941977 ACAACAAAGAAACCAAAATAGAAAACC 58.058 29.630 0.00 0.00 0.00 3.27
45 46 9.495572 ACAACAACAAAGAAACCAAAATAGAAA 57.504 25.926 0.00 0.00 0.00 2.52
73 74 9.313118 GGGAACAAATGAAAAGCGAAAATATAT 57.687 29.630 0.00 0.00 0.00 0.86
74 75 8.527810 AGGGAACAAATGAAAAGCGAAAATATA 58.472 29.630 0.00 0.00 0.00 0.86
75 76 7.386059 AGGGAACAAATGAAAAGCGAAAATAT 58.614 30.769 0.00 0.00 0.00 1.28
76 77 6.754193 AGGGAACAAATGAAAAGCGAAAATA 58.246 32.000 0.00 0.00 0.00 1.40
77 78 5.610398 AGGGAACAAATGAAAAGCGAAAAT 58.390 33.333 0.00 0.00 0.00 1.82
78 79 5.017294 AGGGAACAAATGAAAAGCGAAAA 57.983 34.783 0.00 0.00 0.00 2.29
79 80 4.664150 AGGGAACAAATGAAAAGCGAAA 57.336 36.364 0.00 0.00 0.00 3.46
80 81 4.664150 AAGGGAACAAATGAAAAGCGAA 57.336 36.364 0.00 0.00 0.00 4.70
81 82 4.664150 AAAGGGAACAAATGAAAAGCGA 57.336 36.364 0.00 0.00 0.00 4.93
82 83 5.733226 AAAAAGGGAACAAATGAAAAGCG 57.267 34.783 0.00 0.00 0.00 4.68
102 103 8.894731 GTTTAAAAACAATAAGGCCAGGAAAAA 58.105 29.630 5.01 0.00 38.74 1.94
103 104 8.047310 TGTTTAAAAACAATAAGGCCAGGAAAA 58.953 29.630 5.01 0.00 45.17 2.29
104 105 7.565680 TGTTTAAAAACAATAAGGCCAGGAAA 58.434 30.769 5.01 0.00 45.17 3.13
105 106 7.125792 TGTTTAAAAACAATAAGGCCAGGAA 57.874 32.000 5.01 0.00 45.17 3.36
106 107 6.732896 TGTTTAAAAACAATAAGGCCAGGA 57.267 33.333 5.01 0.00 45.17 3.86
125 126 9.730705 CACCATATATATCATCCAGAAGTGTTT 57.269 33.333 0.00 0.00 0.00 2.83
126 127 9.104713 TCACCATATATATCATCCAGAAGTGTT 57.895 33.333 0.00 0.00 0.00 3.32
127 128 8.670521 TCACCATATATATCATCCAGAAGTGT 57.329 34.615 0.00 0.00 0.00 3.55
128 129 9.376075 GTTCACCATATATATCATCCAGAAGTG 57.624 37.037 0.00 0.00 0.00 3.16
129 130 9.104713 TGTTCACCATATATATCATCCAGAAGT 57.895 33.333 0.00 0.00 0.00 3.01
145 146 9.593134 GGTGCATTTAAAATAATGTTCACCATA 57.407 29.630 15.28 0.00 42.29 2.74
146 147 8.099537 TGGTGCATTTAAAATAATGTTCACCAT 58.900 29.630 17.34 0.00 44.54 3.55
147 148 7.445121 TGGTGCATTTAAAATAATGTTCACCA 58.555 30.769 17.34 17.34 45.71 4.17
148 149 7.897575 TGGTGCATTTAAAATAATGTTCACC 57.102 32.000 14.16 14.16 42.64 4.02
159 160 9.912634 TTTGAAAAACATTTGGTGCATTTAAAA 57.087 22.222 0.00 0.00 0.00 1.52
163 164 8.680903 TGTATTTGAAAAACATTTGGTGCATTT 58.319 25.926 0.00 0.00 0.00 2.32
164 165 8.218338 TGTATTTGAAAAACATTTGGTGCATT 57.782 26.923 0.00 0.00 0.00 3.56
165 166 7.798596 TGTATTTGAAAAACATTTGGTGCAT 57.201 28.000 0.00 0.00 0.00 3.96
166 167 7.281774 ACATGTATTTGAAAAACATTTGGTGCA 59.718 29.630 0.00 0.00 31.60 4.57
167 168 7.638134 ACATGTATTTGAAAAACATTTGGTGC 58.362 30.769 0.00 0.00 31.60 5.01
211 212 9.691362 AAGTTCATCGTGCATTTATTAAAAAGT 57.309 25.926 0.00 0.00 0.00 2.66
216 217 9.906660 AGAAAAAGTTCATCGTGCATTTATTAA 57.093 25.926 0.00 0.00 36.09 1.40
217 218 9.906660 AAGAAAAAGTTCATCGTGCATTTATTA 57.093 25.926 0.00 0.00 36.09 0.98
218 219 8.816640 AAGAAAAAGTTCATCGTGCATTTATT 57.183 26.923 0.00 0.00 36.09 1.40
219 220 9.906660 TTAAGAAAAAGTTCATCGTGCATTTAT 57.093 25.926 0.00 0.00 36.09 1.40
220 221 9.737427 TTTAAGAAAAAGTTCATCGTGCATTTA 57.263 25.926 0.00 0.00 36.09 1.40
221 222 8.641499 TTTAAGAAAAAGTTCATCGTGCATTT 57.359 26.923 0.00 0.00 36.09 2.32
222 223 8.641499 TTTTAAGAAAAAGTTCATCGTGCATT 57.359 26.923 0.00 0.00 36.09 3.56
223 224 8.816640 ATTTTAAGAAAAAGTTCATCGTGCAT 57.183 26.923 0.00 0.00 37.97 3.96
224 225 9.906660 ATATTTTAAGAAAAAGTTCATCGTGCA 57.093 25.926 0.00 0.00 37.97 4.57
234 235 9.051679 GGTGTGCCAAATATTTTAAGAAAAAGT 57.948 29.630 0.00 0.00 34.92 2.66
235 236 9.271828 AGGTGTGCCAAATATTTTAAGAAAAAG 57.728 29.630 0.00 0.00 36.22 2.27
236 237 9.620259 AAGGTGTGCCAAATATTTTAAGAAAAA 57.380 25.926 0.00 0.00 36.77 1.94
237 238 9.620259 AAAGGTGTGCCAAATATTTTAAGAAAA 57.380 25.926 0.00 0.00 37.19 2.29
238 239 9.620259 AAAAGGTGTGCCAAATATTTTAAGAAA 57.380 25.926 0.00 0.00 37.19 2.52
240 241 9.699703 GTAAAAGGTGTGCCAAATATTTTAAGA 57.300 29.630 0.00 0.00 37.19 2.10
241 242 8.643752 CGTAAAAGGTGTGCCAAATATTTTAAG 58.356 33.333 0.00 0.00 37.19 1.85
242 243 8.142551 ACGTAAAAGGTGTGCCAAATATTTTAA 58.857 29.630 0.00 0.00 37.19 1.52
243 244 7.595502 CACGTAAAAGGTGTGCCAAATATTTTA 59.404 33.333 0.00 0.00 37.19 1.52
244 245 6.422400 CACGTAAAAGGTGTGCCAAATATTTT 59.578 34.615 0.00 0.00 37.19 1.82
245 246 5.923684 CACGTAAAAGGTGTGCCAAATATTT 59.076 36.000 0.00 0.00 37.19 1.40
246 247 5.010213 ACACGTAAAAGGTGTGCCAAATATT 59.990 36.000 4.72 0.00 44.42 1.28
247 248 4.521256 ACACGTAAAAGGTGTGCCAAATAT 59.479 37.500 4.72 0.00 44.42 1.28
248 249 3.884091 ACACGTAAAAGGTGTGCCAAATA 59.116 39.130 4.72 0.00 44.42 1.40
249 250 2.691011 ACACGTAAAAGGTGTGCCAAAT 59.309 40.909 4.72 0.00 44.42 2.32
250 251 2.093106 ACACGTAAAAGGTGTGCCAAA 58.907 42.857 4.72 0.00 44.42 3.28
251 252 1.752683 ACACGTAAAAGGTGTGCCAA 58.247 45.000 4.72 0.00 44.42 4.52
252 253 1.671845 GAACACGTAAAAGGTGTGCCA 59.328 47.619 6.19 0.00 45.23 4.92
253 254 2.394545 GAACACGTAAAAGGTGTGCC 57.605 50.000 6.19 0.00 45.23 5.01
254 255 1.671845 TGGAACACGTAAAAGGTGTGC 59.328 47.619 6.19 4.48 45.23 4.57
255 256 4.358494 TTTGGAACACGTAAAAGGTGTG 57.642 40.909 6.19 0.00 45.23 3.82
257 258 7.863375 TGATTTATTTGGAACACGTAAAAGGTG 59.137 33.333 0.00 0.00 39.29 4.00
258 259 7.942990 TGATTTATTTGGAACACGTAAAAGGT 58.057 30.769 0.00 0.00 39.29 3.50
259 260 8.293867 TCTGATTTATTTGGAACACGTAAAAGG 58.706 33.333 0.00 0.00 39.29 3.11
260 261 9.113876 GTCTGATTTATTTGGAACACGTAAAAG 57.886 33.333 0.00 0.00 39.29 2.27
261 262 8.622157 TGTCTGATTTATTTGGAACACGTAAAA 58.378 29.630 0.00 0.00 39.29 1.52
262 263 8.155821 TGTCTGATTTATTTGGAACACGTAAA 57.844 30.769 0.00 0.00 39.29 2.01
263 264 7.731882 TGTCTGATTTATTTGGAACACGTAA 57.268 32.000 0.00 0.00 39.29 3.18
264 265 7.731882 TTGTCTGATTTATTTGGAACACGTA 57.268 32.000 0.00 0.00 39.29 3.57
265 266 6.627395 TTGTCTGATTTATTTGGAACACGT 57.373 33.333 0.00 0.00 39.29 4.49
266 267 8.519492 AATTTGTCTGATTTATTTGGAACACG 57.481 30.769 0.00 0.00 39.29 4.49
268 269 9.829507 ACAAATTTGTCTGATTTATTTGGAACA 57.170 25.926 18.13 0.00 39.37 3.18
337 338 2.420722 TCGTTCGGTTTGCTCAGTTTTT 59.579 40.909 0.00 0.00 0.00 1.94
338 339 2.011222 TCGTTCGGTTTGCTCAGTTTT 58.989 42.857 0.00 0.00 0.00 2.43
339 340 1.658994 TCGTTCGGTTTGCTCAGTTT 58.341 45.000 0.00 0.00 0.00 2.66
340 341 1.658994 TTCGTTCGGTTTGCTCAGTT 58.341 45.000 0.00 0.00 0.00 3.16
341 342 1.658994 TTTCGTTCGGTTTGCTCAGT 58.341 45.000 0.00 0.00 0.00 3.41
342 343 2.748461 TTTTCGTTCGGTTTGCTCAG 57.252 45.000 0.00 0.00 0.00 3.35
359 360 8.024865 GGCTGTACTTCGGTTATAACAATTTTT 58.975 33.333 17.16 0.00 0.00 1.94
360 361 7.392393 AGGCTGTACTTCGGTTATAACAATTTT 59.608 33.333 17.16 1.41 0.00 1.82
361 362 6.882678 AGGCTGTACTTCGGTTATAACAATTT 59.117 34.615 17.16 0.41 0.00 1.82
362 363 6.412214 AGGCTGTACTTCGGTTATAACAATT 58.588 36.000 17.16 1.61 0.00 2.32
363 364 5.985911 AGGCTGTACTTCGGTTATAACAAT 58.014 37.500 17.16 0.63 0.00 2.71
364 365 5.410355 AGGCTGTACTTCGGTTATAACAA 57.590 39.130 17.16 3.38 0.00 2.83
365 366 4.439153 CGAGGCTGTACTTCGGTTATAACA 60.439 45.833 17.16 0.00 0.00 2.41
366 367 4.040376 CGAGGCTGTACTTCGGTTATAAC 58.960 47.826 7.09 7.09 0.00 1.89
367 368 3.067180 CCGAGGCTGTACTTCGGTTATAA 59.933 47.826 15.66 0.00 38.94 0.98
368 369 2.620115 CCGAGGCTGTACTTCGGTTATA 59.380 50.000 15.66 0.00 38.94 0.98
369 370 1.407979 CCGAGGCTGTACTTCGGTTAT 59.592 52.381 15.66 0.00 38.94 1.89
370 371 0.813184 CCGAGGCTGTACTTCGGTTA 59.187 55.000 15.66 0.00 38.94 2.85
371 372 1.590147 CCGAGGCTGTACTTCGGTT 59.410 57.895 15.66 0.00 38.94 4.44
372 373 2.348888 CCCGAGGCTGTACTTCGGT 61.349 63.158 19.58 0.00 41.84 4.69
373 374 1.601419 TTCCCGAGGCTGTACTTCGG 61.601 60.000 16.46 16.46 42.91 4.30
374 375 0.179134 CTTCCCGAGGCTGTACTTCG 60.179 60.000 0.00 0.00 0.00 3.79
375 376 1.183549 TCTTCCCGAGGCTGTACTTC 58.816 55.000 0.00 0.00 0.00 3.01
376 377 1.550976 CTTCTTCCCGAGGCTGTACTT 59.449 52.381 0.00 0.00 0.00 2.24
377 378 1.187087 CTTCTTCCCGAGGCTGTACT 58.813 55.000 0.00 0.00 0.00 2.73
378 379 0.896226 ACTTCTTCCCGAGGCTGTAC 59.104 55.000 0.00 0.00 0.00 2.90
379 380 2.519771 TACTTCTTCCCGAGGCTGTA 57.480 50.000 0.00 0.00 0.00 2.74
380 381 1.757699 GATACTTCTTCCCGAGGCTGT 59.242 52.381 0.00 0.00 0.00 4.40
381 382 1.269309 CGATACTTCTTCCCGAGGCTG 60.269 57.143 0.00 0.00 0.00 4.85
382 383 1.033574 CGATACTTCTTCCCGAGGCT 58.966 55.000 0.00 0.00 0.00 4.58
383 384 0.597898 GCGATACTTCTTCCCGAGGC 60.598 60.000 0.00 0.00 0.00 4.70
384 385 0.317938 CGCGATACTTCTTCCCGAGG 60.318 60.000 0.00 0.00 0.00 4.63
385 386 0.661552 TCGCGATACTTCTTCCCGAG 59.338 55.000 3.71 0.00 0.00 4.63
399 400 0.605319 AATTCAGTTTGGGCTCGCGA 60.605 50.000 9.26 9.26 0.00 5.87
400 401 0.240945 AAATTCAGTTTGGGCTCGCG 59.759 50.000 0.00 0.00 0.00 5.87
469 470 4.568072 TTTTATTGCTAGCTGGTCCTCA 57.432 40.909 17.23 0.00 0.00 3.86
519 520 1.738030 CGAGACGGCGTAGGGATTTTT 60.738 52.381 14.74 0.00 0.00 1.94
520 521 0.179119 CGAGACGGCGTAGGGATTTT 60.179 55.000 14.74 0.00 0.00 1.82
528 529 1.779025 GCTACCATCGAGACGGCGTA 61.779 60.000 14.74 0.00 0.00 4.42
543 544 3.095102 GGGAGACGATGGTAAAGCTAC 57.905 52.381 0.00 0.00 0.00 3.58
564 565 1.095600 GGAACAGAGAATTTCCCGGC 58.904 55.000 0.00 0.00 36.07 6.13
619 620 0.608308 GGAGCTAAGGGTTTGGCGTT 60.608 55.000 0.00 0.00 44.63 4.84
720 722 4.950475 AGATCTGGTAGTTGACGAGAATGA 59.050 41.667 0.00 0.00 44.93 2.57
736 738 4.559229 TCTGCGCGCGAGATCTGG 62.559 66.667 37.18 13.76 0.00 3.86
754 756 4.566987 ACGAGATCTGGTAGTGTTTTTCC 58.433 43.478 8.83 0.00 0.00 3.13
762 764 2.695127 AGACGACGAGATCTGGTAGT 57.305 50.000 20.48 20.48 30.90 2.73
801 803 5.348986 TGAATAAGACGGATCTAGTGTTGC 58.651 41.667 12.11 5.17 33.57 4.17
810 812 4.303086 TCGACCTTGAATAAGACGGATC 57.697 45.455 0.00 0.00 35.92 3.36
928 953 1.227292 GCGGACCTTAGCCTACTGC 60.227 63.158 0.00 0.00 41.71 4.40
970 995 1.151668 CCCAAACTCGAAGCAGTCAG 58.848 55.000 0.00 0.00 0.00 3.51
992 1017 3.900966 TTCTGCTACACATGATCTGCT 57.099 42.857 0.00 0.00 0.00 4.24
1031 1056 8.450578 TCCTTTTGAGATTAACGCATGATATT 57.549 30.769 0.00 0.00 0.00 1.28
1054 1079 3.532641 AATGGCAATATTCCCCTCTCC 57.467 47.619 0.00 0.00 0.00 3.71
1075 1100 0.395311 CAAGCAGAGGATGGCATGGT 60.395 55.000 3.81 0.00 0.00 3.55
1326 1354 0.908198 GGGAGCATGAGAACACCTCT 59.092 55.000 0.00 0.00 42.44 3.69
1347 1375 0.394899 GGTCATCTTTGGGGCCTGAG 60.395 60.000 0.84 0.00 0.00 3.35
1485 1519 0.878523 GTGTTACTGCTCGTGTGGCA 60.879 55.000 0.00 0.00 38.10 4.92
1522 1556 4.708421 GGTAGATGTACACCTGACCAAGTA 59.292 45.833 0.00 0.00 0.00 2.24
1526 1560 2.097036 CGGTAGATGTACACCTGACCA 58.903 52.381 0.00 0.00 32.29 4.02
1564 1598 5.112129 ACCACTTTGTACTTTCTTGTCCT 57.888 39.130 0.00 0.00 0.00 3.85
1770 1825 1.152984 CAACCAGTGCAGGTGTCCA 60.153 57.895 0.00 0.00 42.25 4.02
1920 1975 1.701847 ACAAACTCTGGACCTGATGCT 59.298 47.619 0.96 0.00 0.00 3.79
2038 2096 4.023707 CGGCAATTTCCATATCTCCAGAAC 60.024 45.833 0.00 0.00 0.00 3.01
2297 2358 1.242665 TTCAAGCGATGCATGTGCCA 61.243 50.000 2.46 0.00 41.18 4.92
2366 2427 4.159321 TCTTTTCAACTGTTTCATGCACCA 59.841 37.500 0.00 0.00 0.00 4.17
2386 2447 6.093633 GGCGGAGTAGTTGACAATTTTATCTT 59.906 38.462 0.00 0.00 0.00 2.40
2408 2469 0.739813 CTAGTTTCGGTTGGGAGGCG 60.740 60.000 0.00 0.00 0.00 5.52
2477 2538 4.023291 GGTCAATAGATGCCAGGGAAAAA 58.977 43.478 0.00 0.00 0.00 1.94
2478 2539 3.627237 GGGTCAATAGATGCCAGGGAAAA 60.627 47.826 0.00 0.00 0.00 2.29
2479 2540 2.091885 GGGTCAATAGATGCCAGGGAAA 60.092 50.000 0.00 0.00 0.00 3.13
2480 2541 1.494721 GGGTCAATAGATGCCAGGGAA 59.505 52.381 0.00 0.00 0.00 3.97
2578 2639 3.442625 CGTGTGTCCTCTACAAGGTATGA 59.557 47.826 0.00 0.00 46.32 2.15
2600 2661 4.697352 ACTAAGTGAAGGATCAATGTGTGC 59.303 41.667 0.00 0.00 37.30 4.57
2731 2792 5.086058 CCATTTACGGTCTCGATTGTTTTG 58.914 41.667 0.00 0.00 40.11 2.44
2736 2797 6.598753 AATAACCATTTACGGTCTCGATTG 57.401 37.500 0.00 0.00 38.76 2.67
2757 2818 8.819845 TGTCTGCTATGATTCATGGTCTATAAT 58.180 33.333 9.46 0.00 0.00 1.28
2758 2819 8.193953 TGTCTGCTATGATTCATGGTCTATAA 57.806 34.615 9.46 0.00 0.00 0.98
2759 2820 7.781324 TGTCTGCTATGATTCATGGTCTATA 57.219 36.000 9.46 0.00 0.00 1.31
2760 2821 6.676990 TGTCTGCTATGATTCATGGTCTAT 57.323 37.500 9.46 0.00 0.00 1.98
2761 2822 6.484364 TTGTCTGCTATGATTCATGGTCTA 57.516 37.500 9.46 0.00 0.00 2.59
2762 2823 5.363562 TTGTCTGCTATGATTCATGGTCT 57.636 39.130 9.46 0.00 0.00 3.85
2763 2824 5.048921 CCATTGTCTGCTATGATTCATGGTC 60.049 44.000 9.46 3.92 31.09 4.02
2764 2825 4.825634 CCATTGTCTGCTATGATTCATGGT 59.174 41.667 9.46 0.00 31.09 3.55
2765 2826 4.825634 ACCATTGTCTGCTATGATTCATGG 59.174 41.667 9.46 7.52 31.09 3.66
2766 2827 5.529800 TGACCATTGTCTGCTATGATTCATG 59.470 40.000 9.46 1.24 42.28 3.07
2767 2828 5.530171 GTGACCATTGTCTGCTATGATTCAT 59.470 40.000 4.28 4.28 42.28 2.57
2768 2829 4.877823 GTGACCATTGTCTGCTATGATTCA 59.122 41.667 0.00 0.00 42.28 2.57
2769 2830 4.877823 TGTGACCATTGTCTGCTATGATTC 59.122 41.667 0.00 0.00 42.28 2.52
2770 2831 4.847198 TGTGACCATTGTCTGCTATGATT 58.153 39.130 0.00 0.00 42.28 2.57
2771 2832 4.492494 TGTGACCATTGTCTGCTATGAT 57.508 40.909 0.00 0.00 42.28 2.45
2772 2833 3.979101 TGTGACCATTGTCTGCTATGA 57.021 42.857 0.00 0.00 42.28 2.15
2773 2834 5.118286 TGTATGTGACCATTGTCTGCTATG 58.882 41.667 0.00 0.00 42.28 2.23
2774 2835 5.357742 TGTATGTGACCATTGTCTGCTAT 57.642 39.130 0.00 0.00 42.28 2.97
2775 2836 4.817318 TGTATGTGACCATTGTCTGCTA 57.183 40.909 0.00 0.00 42.28 3.49
2776 2837 3.701205 TGTATGTGACCATTGTCTGCT 57.299 42.857 0.00 0.00 42.28 4.24
2777 2838 4.764679 TTTGTATGTGACCATTGTCTGC 57.235 40.909 0.00 0.00 42.28 4.26
2778 2839 5.097529 GCATTTGTATGTGACCATTGTCTG 58.902 41.667 0.00 0.00 36.04 3.51
2779 2840 4.766373 TGCATTTGTATGTGACCATTGTCT 59.234 37.500 0.00 0.00 36.04 3.41
2780 2841 4.858692 GTGCATTTGTATGTGACCATTGTC 59.141 41.667 0.00 0.00 35.82 3.18
2781 2842 4.280425 TGTGCATTTGTATGTGACCATTGT 59.720 37.500 0.00 0.00 34.12 2.71
2782 2843 4.622313 GTGTGCATTTGTATGTGACCATTG 59.378 41.667 0.00 0.00 34.12 2.82
2783 2844 4.523943 AGTGTGCATTTGTATGTGACCATT 59.476 37.500 0.00 0.00 34.12 3.16
2784 2845 4.081406 AGTGTGCATTTGTATGTGACCAT 58.919 39.130 0.00 0.00 34.12 3.55
2785 2846 3.252944 CAGTGTGCATTTGTATGTGACCA 59.747 43.478 0.00 0.00 34.12 4.02
2786 2847 3.825308 CAGTGTGCATTTGTATGTGACC 58.175 45.455 0.00 0.00 34.12 4.02
2787 2848 3.236816 GCAGTGTGCATTTGTATGTGAC 58.763 45.455 0.00 0.00 44.26 3.67
2788 2849 3.557577 GCAGTGTGCATTTGTATGTGA 57.442 42.857 0.00 0.00 44.26 3.58
2800 2861 0.865639 GGAAACGTGTTGCAGTGTGC 60.866 55.000 0.00 0.00 45.29 4.57
2801 2862 0.449786 TGGAAACGTGTTGCAGTGTG 59.550 50.000 0.00 0.00 0.00 3.82
2802 2863 1.388547 ATGGAAACGTGTTGCAGTGT 58.611 45.000 9.59 0.00 0.00 3.55
2803 2864 2.490328 AATGGAAACGTGTTGCAGTG 57.510 45.000 9.59 0.00 0.00 3.66
2804 2865 3.003275 CAGTAATGGAAACGTGTTGCAGT 59.997 43.478 9.59 9.32 0.00 4.40
2805 2866 3.554524 CAGTAATGGAAACGTGTTGCAG 58.445 45.455 9.59 0.00 0.00 4.41
2806 2867 2.292016 CCAGTAATGGAAACGTGTTGCA 59.708 45.455 2.11 7.01 0.00 4.08
2807 2868 2.550606 TCCAGTAATGGAAACGTGTTGC 59.449 45.455 10.01 0.00 34.56 4.17
2808 2869 4.822036 TTCCAGTAATGGAAACGTGTTG 57.178 40.909 21.79 0.00 44.21 3.33
2990 3051 6.602406 TGGGCTTACTTAAGTTTGTTTACACA 59.398 34.615 14.49 1.75 35.75 3.72
3071 3132 5.188359 GCCTACCCATAGATTAACCCGATAA 59.812 44.000 0.00 0.00 0.00 1.75
3150 3218 4.210331 GGACGGAGGGAGTACATACTAAA 58.790 47.826 0.00 0.00 36.50 1.85
3169 3237 0.589223 TGCGACATGTTTTTCGGGAC 59.411 50.000 0.00 0.00 35.73 4.46
3170 3238 0.871722 CTGCGACATGTTTTTCGGGA 59.128 50.000 0.00 0.00 35.73 5.14
3171 3239 0.591170 ACTGCGACATGTTTTTCGGG 59.409 50.000 0.00 0.00 35.73 5.14
3172 3240 1.662876 CCACTGCGACATGTTTTTCGG 60.663 52.381 0.00 0.00 35.73 4.30
3173 3241 1.673760 CCACTGCGACATGTTTTTCG 58.326 50.000 0.00 0.00 38.31 3.46
3174 3242 1.268999 TGCCACTGCGACATGTTTTTC 60.269 47.619 0.00 0.00 41.78 2.29
3175 3243 0.743688 TGCCACTGCGACATGTTTTT 59.256 45.000 0.00 0.00 41.78 1.94
3176 3244 0.030638 GTGCCACTGCGACATGTTTT 59.969 50.000 0.00 0.00 41.78 2.43
3177 3245 0.819259 AGTGCCACTGCGACATGTTT 60.819 50.000 0.00 0.00 41.78 2.83
3178 3246 0.819259 AAGTGCCACTGCGACATGTT 60.819 50.000 0.00 0.00 41.78 2.71
3179 3247 0.819259 AAAGTGCCACTGCGACATGT 60.819 50.000 0.00 0.00 41.78 3.21
3180 3248 0.311790 AAAAGTGCCACTGCGACATG 59.688 50.000 0.00 0.00 41.78 3.21
3181 3249 1.890876 TAAAAGTGCCACTGCGACAT 58.109 45.000 0.00 0.00 41.78 3.06
3182 3250 1.535028 CATAAAAGTGCCACTGCGACA 59.465 47.619 0.00 0.00 41.78 4.35
3183 3251 1.804151 TCATAAAAGTGCCACTGCGAC 59.196 47.619 0.00 0.00 41.78 5.19
3184 3252 2.177394 TCATAAAAGTGCCACTGCGA 57.823 45.000 0.00 0.00 41.78 5.10
3185 3253 2.987413 TTCATAAAAGTGCCACTGCG 57.013 45.000 0.00 0.00 41.78 5.18
3186 3254 4.627035 GGATTTTCATAAAAGTGCCACTGC 59.373 41.667 0.00 0.00 33.22 4.40
3187 3255 5.170748 GGGATTTTCATAAAAGTGCCACTG 58.829 41.667 0.00 0.00 40.76 3.66
3188 3256 4.222810 GGGGATTTTCATAAAAGTGCCACT 59.777 41.667 0.00 0.00 42.21 4.00
3189 3257 4.222810 AGGGGATTTTCATAAAAGTGCCAC 59.777 41.667 0.00 0.00 42.21 5.01
3190 3258 4.424842 AGGGGATTTTCATAAAAGTGCCA 58.575 39.130 0.00 0.00 42.21 4.92
3191 3259 4.466015 TGAGGGGATTTTCATAAAAGTGCC 59.534 41.667 0.00 0.00 40.48 5.01
3192 3260 5.654497 CTGAGGGGATTTTCATAAAAGTGC 58.346 41.667 0.00 0.00 33.22 4.40
3193 3261 5.654497 GCTGAGGGGATTTTCATAAAAGTG 58.346 41.667 0.00 0.00 33.22 3.16
3194 3262 4.399303 CGCTGAGGGGATTTTCATAAAAGT 59.601 41.667 0.00 0.00 33.22 2.66
3195 3263 4.640201 TCGCTGAGGGGATTTTCATAAAAG 59.360 41.667 0.00 0.00 33.22 2.27
3196 3264 4.594970 TCGCTGAGGGGATTTTCATAAAA 58.405 39.130 0.00 0.00 34.41 1.52
3197 3265 4.229304 TCGCTGAGGGGATTTTCATAAA 57.771 40.909 0.00 0.00 0.00 1.40
3198 3266 3.924114 TCGCTGAGGGGATTTTCATAA 57.076 42.857 0.00 0.00 0.00 1.90
3199 3267 3.924114 TTCGCTGAGGGGATTTTCATA 57.076 42.857 0.00 0.00 34.41 2.15
3200 3268 2.806945 TTCGCTGAGGGGATTTTCAT 57.193 45.000 0.00 0.00 34.41 2.57
3201 3269 2.806945 ATTCGCTGAGGGGATTTTCA 57.193 45.000 0.00 0.00 34.41 2.69
3202 3270 2.359214 GGAATTCGCTGAGGGGATTTTC 59.641 50.000 4.40 0.00 34.41 2.29
3203 3271 2.379005 GGAATTCGCTGAGGGGATTTT 58.621 47.619 4.40 0.00 34.41 1.82
3204 3272 1.410224 GGGAATTCGCTGAGGGGATTT 60.410 52.381 14.84 0.00 34.41 2.17
3205 3273 0.183731 GGGAATTCGCTGAGGGGATT 59.816 55.000 14.84 2.27 34.41 3.01
3206 3274 1.839894 GGGAATTCGCTGAGGGGAT 59.160 57.895 14.84 0.00 34.41 3.85
3207 3275 2.731571 CGGGAATTCGCTGAGGGGA 61.732 63.158 19.06 0.00 0.00 4.81
3208 3276 2.203070 CGGGAATTCGCTGAGGGG 60.203 66.667 19.06 0.25 0.00 4.79
3209 3277 1.521681 GTCGGGAATTCGCTGAGGG 60.522 63.158 19.06 4.72 0.00 4.30
3210 3278 1.084370 GTGTCGGGAATTCGCTGAGG 61.084 60.000 19.06 5.07 0.00 3.86
3211 3279 0.389817 TGTGTCGGGAATTCGCTGAG 60.390 55.000 19.06 5.40 0.00 3.35
3212 3280 0.034198 TTGTGTCGGGAATTCGCTGA 59.966 50.000 19.06 14.70 0.00 4.26
3213 3281 0.165944 GTTGTGTCGGGAATTCGCTG 59.834 55.000 19.06 12.88 0.00 5.18
3214 3282 0.953960 GGTTGTGTCGGGAATTCGCT 60.954 55.000 19.06 0.00 0.00 4.93
3215 3283 1.500396 GGTTGTGTCGGGAATTCGC 59.500 57.895 12.30 12.30 0.00 4.70
3216 3284 1.632046 CGGGTTGTGTCGGGAATTCG 61.632 60.000 0.00 0.00 0.00 3.34
3217 3285 1.918868 GCGGGTTGTGTCGGGAATTC 61.919 60.000 0.00 0.00 0.00 2.17
3218 3286 1.969589 GCGGGTTGTGTCGGGAATT 60.970 57.895 0.00 0.00 0.00 2.17
3219 3287 2.359478 GCGGGTTGTGTCGGGAAT 60.359 61.111 0.00 0.00 0.00 3.01
3220 3288 3.862991 TGCGGGTTGTGTCGGGAA 61.863 61.111 0.00 0.00 0.00 3.97
3221 3289 4.612412 GTGCGGGTTGTGTCGGGA 62.612 66.667 0.00 0.00 0.00 5.14
3222 3290 4.619227 AGTGCGGGTTGTGTCGGG 62.619 66.667 0.00 0.00 0.00 5.14
3223 3291 3.041940 GAGTGCGGGTTGTGTCGG 61.042 66.667 0.00 0.00 0.00 4.79
3224 3292 3.041940 GGAGTGCGGGTTGTGTCG 61.042 66.667 0.00 0.00 0.00 4.35
3225 3293 2.668550 GGGAGTGCGGGTTGTGTC 60.669 66.667 0.00 0.00 0.00 3.67
3226 3294 3.168528 AGGGAGTGCGGGTTGTGT 61.169 61.111 0.00 0.00 0.00 3.72
3227 3295 2.669569 CAGGGAGTGCGGGTTGTG 60.670 66.667 0.00 0.00 0.00 3.33
3228 3296 3.953775 CCAGGGAGTGCGGGTTGT 61.954 66.667 0.00 0.00 0.00 3.32
3229 3297 3.901797 GACCAGGGAGTGCGGGTTG 62.902 68.421 0.00 0.00 32.77 3.77
3230 3298 3.637273 GACCAGGGAGTGCGGGTT 61.637 66.667 0.00 0.00 32.77 4.11
3233 3301 4.436998 GACGACCAGGGAGTGCGG 62.437 72.222 0.00 0.00 0.00 5.69
3234 3302 3.343788 GAGACGACCAGGGAGTGCG 62.344 68.421 0.00 0.00 0.00 5.34
3235 3303 2.574399 GAGACGACCAGGGAGTGC 59.426 66.667 0.00 0.00 0.00 4.40
3236 3304 2.352032 GGGAGACGACCAGGGAGTG 61.352 68.421 0.00 0.00 0.00 3.51
3237 3305 2.037527 GGGAGACGACCAGGGAGT 59.962 66.667 0.00 0.00 0.00 3.85
3238 3306 1.755008 GAGGGAGACGACCAGGGAG 60.755 68.421 0.00 0.00 0.00 4.30
3239 3307 2.359404 GAGGGAGACGACCAGGGA 59.641 66.667 0.00 0.00 0.00 4.20
3240 3308 3.141488 CGAGGGAGACGACCAGGG 61.141 72.222 0.00 0.00 0.00 4.45
3241 3309 3.827898 GCGAGGGAGACGACCAGG 61.828 72.222 0.00 0.00 0.00 4.45
3242 3310 2.752238 AGCGAGGGAGACGACCAG 60.752 66.667 0.00 0.00 0.00 4.00
3243 3311 2.750637 GAGCGAGGGAGACGACCA 60.751 66.667 0.00 0.00 0.00 4.02
3244 3312 3.878519 CGAGCGAGGGAGACGACC 61.879 72.222 0.00 0.00 0.00 4.79
3245 3313 3.098377 GACGAGCGAGGGAGACGAC 62.098 68.421 0.00 0.00 0.00 4.34
3246 3314 2.818714 GACGAGCGAGGGAGACGA 60.819 66.667 0.00 0.00 0.00 4.20
3247 3315 2.815298 GAGACGAGCGAGGGAGACG 61.815 68.421 0.00 0.00 0.00 4.18
3248 3316 2.474612 GGAGACGAGCGAGGGAGAC 61.475 68.421 0.00 0.00 0.00 3.36
3249 3317 2.124653 GGAGACGAGCGAGGGAGA 60.125 66.667 0.00 0.00 0.00 3.71
3250 3318 3.213402 GGGAGACGAGCGAGGGAG 61.213 72.222 0.00 0.00 0.00 4.30
3251 3319 4.816984 GGGGAGACGAGCGAGGGA 62.817 72.222 0.00 0.00 0.00 4.20
3252 3320 4.824515 AGGGGAGACGAGCGAGGG 62.825 72.222 0.00 0.00 0.00 4.30
3253 3321 3.522731 CAGGGGAGACGAGCGAGG 61.523 72.222 0.00 0.00 0.00 4.63
3254 3322 4.200283 GCAGGGGAGACGAGCGAG 62.200 72.222 0.00 0.00 0.00 5.03
3366 3434 4.821589 GAGGGAAGCGCGGTGGAG 62.822 72.222 13.41 0.00 0.00 3.86
3368 3436 4.821589 GAGAGGGAAGCGCGGTGG 62.822 72.222 13.41 0.00 0.00 4.61
3369 3437 4.821589 GGAGAGGGAAGCGCGGTG 62.822 72.222 13.41 0.00 0.00 4.94
3371 3439 3.775654 AAGGAGAGGGAAGCGCGG 61.776 66.667 8.83 0.00 0.00 6.46
3372 3440 2.510238 CAAGGAGAGGGAAGCGCG 60.510 66.667 0.00 0.00 0.00 6.86
3373 3441 1.003233 AACAAGGAGAGGGAAGCGC 60.003 57.895 0.00 0.00 0.00 5.92
3374 3442 0.391793 GGAACAAGGAGAGGGAAGCG 60.392 60.000 0.00 0.00 0.00 4.68
3375 3443 0.034960 GGGAACAAGGAGAGGGAAGC 60.035 60.000 0.00 0.00 0.00 3.86
3376 3444 1.662686 AGGGAACAAGGAGAGGGAAG 58.337 55.000 0.00 0.00 0.00 3.46
3377 3445 2.133858 AAGGGAACAAGGAGAGGGAA 57.866 50.000 0.00 0.00 0.00 3.97
3378 3446 3.508952 ATAAGGGAACAAGGAGAGGGA 57.491 47.619 0.00 0.00 0.00 4.20
3379 3447 3.432326 CGAATAAGGGAACAAGGAGAGGG 60.432 52.174 0.00 0.00 0.00 4.30
3380 3448 3.197983 ACGAATAAGGGAACAAGGAGAGG 59.802 47.826 0.00 0.00 0.00 3.69
3381 3449 4.473477 ACGAATAAGGGAACAAGGAGAG 57.527 45.455 0.00 0.00 0.00 3.20
3382 3450 4.323257 GGAACGAATAAGGGAACAAGGAGA 60.323 45.833 0.00 0.00 0.00 3.71
3383 3451 3.939592 GGAACGAATAAGGGAACAAGGAG 59.060 47.826 0.00 0.00 0.00 3.69
3384 3452 3.307904 GGGAACGAATAAGGGAACAAGGA 60.308 47.826 0.00 0.00 0.00 3.36
3385 3453 3.014623 GGGAACGAATAAGGGAACAAGG 58.985 50.000 0.00 0.00 0.00 3.61
3386 3454 3.014623 GGGGAACGAATAAGGGAACAAG 58.985 50.000 0.00 0.00 0.00 3.16
3387 3455 2.375845 TGGGGAACGAATAAGGGAACAA 59.624 45.455 0.00 0.00 0.00 2.83
3388 3456 1.986631 TGGGGAACGAATAAGGGAACA 59.013 47.619 0.00 0.00 0.00 3.18
3389 3457 2.793288 TGGGGAACGAATAAGGGAAC 57.207 50.000 0.00 0.00 0.00 3.62
3390 3458 2.092103 CCATGGGGAACGAATAAGGGAA 60.092 50.000 2.85 0.00 35.59 3.97
3391 3459 1.493022 CCATGGGGAACGAATAAGGGA 59.507 52.381 2.85 0.00 35.59 4.20
3392 3460 1.214424 ACCATGGGGAACGAATAAGGG 59.786 52.381 18.09 0.00 38.05 3.95
3393 3461 2.092646 TCACCATGGGGAACGAATAAGG 60.093 50.000 16.35 0.00 38.05 2.69
3394 3462 3.275617 TCACCATGGGGAACGAATAAG 57.724 47.619 16.35 0.00 38.05 1.73
3395 3463 3.722908 TTCACCATGGGGAACGAATAA 57.277 42.857 25.99 1.00 38.05 1.40
3396 3464 3.201045 TGATTCACCATGGGGAACGAATA 59.799 43.478 31.62 9.15 38.05 1.75
3397 3465 2.025416 TGATTCACCATGGGGAACGAAT 60.025 45.455 31.62 16.15 38.05 3.34
3398 3466 1.352687 TGATTCACCATGGGGAACGAA 59.647 47.619 31.62 16.80 38.05 3.85
3399 3467 0.988063 TGATTCACCATGGGGAACGA 59.012 50.000 31.62 17.81 38.05 3.85
3400 3468 1.094785 GTGATTCACCATGGGGAACG 58.905 55.000 31.62 6.31 38.05 3.95
3401 3469 1.094785 CGTGATTCACCATGGGGAAC 58.905 55.000 31.62 23.27 38.05 3.62
3402 3470 0.034574 CCGTGATTCACCATGGGGAA 60.035 55.000 31.15 31.15 39.08 3.97
3403 3471 1.607071 CCGTGATTCACCATGGGGA 59.393 57.895 14.36 14.36 39.08 4.81
3404 3472 4.240881 CCGTGATTCACCATGGGG 57.759 61.111 18.09 13.53 39.08 4.96
3406 3474 1.382522 CTTCCCGTGATTCACCATGG 58.617 55.000 11.19 11.19 41.71 3.66
3407 3475 1.065491 TCCTTCCCGTGATTCACCATG 60.065 52.381 11.12 0.51 0.00 3.66
3408 3476 1.285280 TCCTTCCCGTGATTCACCAT 58.715 50.000 11.12 0.00 0.00 3.55
3409 3477 2.766698 TCCTTCCCGTGATTCACCA 58.233 52.632 11.12 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.