Multiple sequence alignment - TraesCS7B01G050400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G050400 chr7B 100.000 3728 0 0 1 3728 51883774 51887501 0 6885
1 TraesCS7B01G050400 chr7B 84.449 1434 179 26 1 1397 73167738 73169164 0 1373
2 TraesCS7B01G050400 chr3B 96.151 3248 109 9 1 3241 473235659 473238897 0 5291
3 TraesCS7B01G050400 chr3B 84.229 1433 183 26 1 1397 766341705 766343130 0 1354
4 TraesCS7B01G050400 chr6B 95.197 3248 128 10 1 3241 48079470 48082696 0 5108
5 TraesCS7B01G050400 chr4B 94.891 3249 151 10 1 3242 321542007 321545247 0 5066
6 TraesCS7B01G050400 chr4B 95.195 2435 106 7 813 3243 587099150 587101577 0 3838
7 TraesCS7B01G050400 chr4B 95.513 780 29 4 1 776 587098370 587099147 0 1242
8 TraesCS7B01G050400 chr4B 93.456 489 31 1 3240 3728 47536792 47536305 0 725
9 TraesCS7B01G050400 chr7A 93.389 3252 144 21 1 3241 126148518 126151709 0 4748
10 TraesCS7B01G050400 chr6A 94.610 2412 97 12 1 2409 182420388 182418007 0 3703
11 TraesCS7B01G050400 chr6A 93.513 1896 87 12 1357 3247 137393776 137391912 0 2787
12 TraesCS7B01G050400 chr6A 94.302 1369 52 7 1 1364 137493487 137492140 0 2073
13 TraesCS7B01G050400 chr6A 91.992 974 65 11 2276 3242 182418174 182417207 0 1354
14 TraesCS7B01G050400 chr2A 93.993 2414 95 10 1 2409 778648761 778651129 0 3609
15 TraesCS7B01G050400 chr2A 91.649 958 70 8 2291 3241 778650974 778651928 0 1317
16 TraesCS7B01G050400 chr6D 92.976 1381 70 11 1873 3241 16251411 16252776 0 1988
17 TraesCS7B01G050400 chr6D 94.070 489 29 0 3240 3728 431624069 431624557 0 743
18 TraesCS7B01G050400 chr5A 81.735 2305 320 56 196 2449 514149474 514147220 0 1831
19 TraesCS7B01G050400 chr3A 95.981 846 30 3 1 843 153362654 153363498 0 1371
20 TraesCS7B01G050400 chr2B 94.070 489 29 0 3240 3728 441063915 441063427 0 743
21 TraesCS7B01G050400 chr7D 94.070 489 28 1 3240 3728 108929164 108928677 0 741
22 TraesCS7B01G050400 chr1B 93.673 490 29 2 3240 3728 619716834 619716346 0 732
23 TraesCS7B01G050400 chr1B 93.265 490 32 1 3240 3728 428387007 428387496 0 721
24 TraesCS7B01G050400 chr5B 93.673 490 28 2 3240 3728 595397479 595396992 0 730
25 TraesCS7B01G050400 chr3D 93.306 493 29 1 3240 3728 42754913 42754421 0 725
26 TraesCS7B01G050400 chr3D 93.252 489 33 0 3240 3728 416448524 416448036 0 721


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G050400 chr7B 51883774 51887501 3727 False 6885.0 6885 100.000 1 3728 1 chr7B.!!$F1 3727
1 TraesCS7B01G050400 chr7B 73167738 73169164 1426 False 1373.0 1373 84.449 1 1397 1 chr7B.!!$F2 1396
2 TraesCS7B01G050400 chr3B 473235659 473238897 3238 False 5291.0 5291 96.151 1 3241 1 chr3B.!!$F1 3240
3 TraesCS7B01G050400 chr3B 766341705 766343130 1425 False 1354.0 1354 84.229 1 1397 1 chr3B.!!$F2 1396
4 TraesCS7B01G050400 chr6B 48079470 48082696 3226 False 5108.0 5108 95.197 1 3241 1 chr6B.!!$F1 3240
5 TraesCS7B01G050400 chr4B 321542007 321545247 3240 False 5066.0 5066 94.891 1 3242 1 chr4B.!!$F1 3241
6 TraesCS7B01G050400 chr4B 587098370 587101577 3207 False 2540.0 3838 95.354 1 3243 2 chr4B.!!$F2 3242
7 TraesCS7B01G050400 chr7A 126148518 126151709 3191 False 4748.0 4748 93.389 1 3241 1 chr7A.!!$F1 3240
8 TraesCS7B01G050400 chr6A 137391912 137393776 1864 True 2787.0 2787 93.513 1357 3247 1 chr6A.!!$R1 1890
9 TraesCS7B01G050400 chr6A 182417207 182420388 3181 True 2528.5 3703 93.301 1 3242 2 chr6A.!!$R3 3241
10 TraesCS7B01G050400 chr6A 137492140 137493487 1347 True 2073.0 2073 94.302 1 1364 1 chr6A.!!$R2 1363
11 TraesCS7B01G050400 chr2A 778648761 778651928 3167 False 2463.0 3609 92.821 1 3241 2 chr2A.!!$F1 3240
12 TraesCS7B01G050400 chr6D 16251411 16252776 1365 False 1988.0 1988 92.976 1873 3241 1 chr6D.!!$F1 1368
13 TraesCS7B01G050400 chr5A 514147220 514149474 2254 True 1831.0 1831 81.735 196 2449 1 chr5A.!!$R1 2253
14 TraesCS7B01G050400 chr3A 153362654 153363498 844 False 1371.0 1371 95.981 1 843 1 chr3A.!!$F1 842

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 533 0.907704 ACGGCATAGAACCCACCTCA 60.908 55.000 0.0 0.0 0.00 3.86 F
1309 1396 2.649312 ACATGGGATGGAAACTGGAAGA 59.351 45.455 0.0 0.0 33.64 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 1790 0.538287 GCCTCACCAAAGCCTTCAGT 60.538 55.0 0.0 0.0 0.0 3.41 R
2731 2960 1.703411 ACCACACCACCCATCTTTTG 58.297 50.0 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
237 247 5.244178 CGGCTACTATCAAAGGAAGATACCT 59.756 44.000 0.00 0.00 42.69 3.08
244 254 8.371699 ACTATCAAAGGAAGATACCTATCAAGC 58.628 37.037 0.00 0.00 39.62 4.01
475 509 3.497942 GGTCAAAGGTATCACTTGGGTGT 60.498 47.826 0.00 0.00 43.41 4.16
478 512 4.825085 TCAAAGGTATCACTTGGGTGTTTC 59.175 41.667 0.00 0.00 43.41 2.78
482 516 1.508632 ATCACTTGGGTGTTTCGACG 58.491 50.000 0.00 0.00 43.41 5.12
499 533 0.907704 ACGGCATAGAACCCACCTCA 60.908 55.000 0.00 0.00 0.00 3.86
712 754 4.646040 CCCACTTGATAATGATGAGCCAAA 59.354 41.667 0.00 0.00 0.00 3.28
732 774 7.226523 AGCCAAAAATACAAGAAACATTGGAAC 59.773 33.333 5.45 0.00 38.64 3.62
908 955 7.791949 TCACTTTGTTGCTAGTTTTGTTTTTG 58.208 30.769 0.00 0.00 0.00 2.44
1003 1087 7.744087 TTGTTCTTGCTTTGTACAGATATGT 57.256 32.000 0.00 0.00 0.00 2.29
1078 1165 4.305769 GACTTCGGATGAGGATGATGAAG 58.694 47.826 0.00 0.00 37.83 3.02
1255 1342 5.130311 AGGCACTTTAGGACAAAATTTGGTT 59.870 36.000 10.71 0.00 27.25 3.67
1308 1395 2.756760 CACATGGGATGGAAACTGGAAG 59.243 50.000 0.00 0.00 35.22 3.46
1309 1396 2.649312 ACATGGGATGGAAACTGGAAGA 59.351 45.455 0.00 0.00 33.64 2.87
1310 1397 3.270433 ACATGGGATGGAAACTGGAAGAT 59.730 43.478 0.00 0.00 33.64 2.40
1377 1464 5.888161 GGTAGATCACTTCACCCATCAAAAT 59.112 40.000 0.00 0.00 0.00 1.82
1571 1669 8.035394 TCGCATTTCTATCAAAGACTAAGTTCT 58.965 33.333 0.00 0.00 32.51 3.01
1690 1790 6.313519 AGGACATAGCAACTGGAGAAAATA 57.686 37.500 0.00 0.00 0.00 1.40
1798 1898 0.039911 AGGGACAGCTAGACGGTCTT 59.960 55.000 16.95 0.00 42.47 3.01
1868 1968 0.040204 CCAAGGCCAAAGAGGGTGAT 59.960 55.000 5.01 0.00 38.09 3.06
1876 1976 0.995024 AAAGAGGGTGATGGGACCAG 59.005 55.000 0.00 0.00 37.80 4.00
1896 1996 4.209538 CAGGTGATCCCTTTGCAATGATA 58.790 43.478 13.58 2.01 42.73 2.15
1923 2023 4.434545 AGATGTCAATAGCCAGCTGAAT 57.565 40.909 17.39 5.50 0.00 2.57
1973 2073 3.777465 AGCATCATTGTCAGCATCAAC 57.223 42.857 0.00 0.00 0.00 3.18
1976 2076 1.452110 TCATTGTCAGCATCAACGGG 58.548 50.000 0.00 0.00 0.00 5.28
1984 2084 2.086869 CAGCATCAACGGGACAAGAAT 58.913 47.619 0.00 0.00 0.00 2.40
1988 2088 3.338249 CATCAACGGGACAAGAATCAGT 58.662 45.455 0.00 0.00 0.00 3.41
2139 2243 4.503910 TGCTTGCGCTTCTAGAAAATCTA 58.496 39.130 9.73 0.00 36.97 1.98
2144 2248 5.109903 TGCGCTTCTAGAAAATCTAAGGAC 58.890 41.667 9.73 0.00 0.00 3.85
2170 2274 7.470147 CGGAGTATGTCCTAAAAATGCTCTCTA 60.470 40.741 0.00 0.00 44.35 2.43
2250 2367 1.957177 TCTACCTCTGATTGGCTAGCG 59.043 52.381 9.00 0.00 0.00 4.26
2400 2589 7.036220 CGTAGTATATGTTCCATCCAATCTCC 58.964 42.308 0.00 0.00 0.00 3.71
2477 2702 9.340695 ACATGTGATGTTAATTTACAATGAACG 57.659 29.630 11.82 0.56 41.63 3.95
2793 3022 6.160576 TGGAAAAGCTACTTTGCAAGATTT 57.839 33.333 0.00 0.00 34.20 2.17
2954 3191 4.159135 AGGATGTCTTGGATGAATGCAAAC 59.841 41.667 0.00 2.13 37.67 2.93
3040 3278 4.180057 TGCATGTGAAAACCTTGTCAAAC 58.820 39.130 0.00 0.00 0.00 2.93
3148 3386 3.312146 TGATAACATTACTGGCATGTGCG 59.688 43.478 0.00 0.00 43.26 5.34
3152 3390 2.162208 ACATTACTGGCATGTGCGAAAG 59.838 45.455 0.00 0.00 43.26 2.62
3192 3430 3.878667 CCCTTCGATCCCCCAGCC 61.879 72.222 0.00 0.00 0.00 4.85
3198 3441 0.619255 TCGATCCCCCAGCCTGTTAA 60.619 55.000 0.00 0.00 0.00 2.01
3243 3486 4.469945 CCAGAGAACCAAACACCTCCTATA 59.530 45.833 0.00 0.00 0.00 1.31
3244 3487 5.420409 CAGAGAACCAAACACCTCCTATAC 58.580 45.833 0.00 0.00 0.00 1.47
3247 3490 5.805728 AGAACCAAACACCTCCTATACTTG 58.194 41.667 0.00 0.00 0.00 3.16
3248 3491 5.546499 AGAACCAAACACCTCCTATACTTGA 59.454 40.000 0.00 0.00 0.00 3.02
3249 3492 5.161943 ACCAAACACCTCCTATACTTGAC 57.838 43.478 0.00 0.00 0.00 3.18
3250 3493 4.019591 ACCAAACACCTCCTATACTTGACC 60.020 45.833 0.00 0.00 0.00 4.02
3251 3494 4.225267 CCAAACACCTCCTATACTTGACCT 59.775 45.833 0.00 0.00 0.00 3.85
3252 3495 5.280521 CCAAACACCTCCTATACTTGACCTT 60.281 44.000 0.00 0.00 0.00 3.50
3253 3496 6.238648 CAAACACCTCCTATACTTGACCTTT 58.761 40.000 0.00 0.00 0.00 3.11
3254 3497 6.449830 AACACCTCCTATACTTGACCTTTT 57.550 37.500 0.00 0.00 0.00 2.27
3255 3498 6.449830 ACACCTCCTATACTTGACCTTTTT 57.550 37.500 0.00 0.00 0.00 1.94
3256 3499 7.563724 ACACCTCCTATACTTGACCTTTTTA 57.436 36.000 0.00 0.00 0.00 1.52
3257 3500 8.159229 ACACCTCCTATACTTGACCTTTTTAT 57.841 34.615 0.00 0.00 0.00 1.40
3258 3501 8.612145 ACACCTCCTATACTTGACCTTTTTATT 58.388 33.333 0.00 0.00 0.00 1.40
3259 3502 8.893727 CACCTCCTATACTTGACCTTTTTATTG 58.106 37.037 0.00 0.00 0.00 1.90
3260 3503 8.832735 ACCTCCTATACTTGACCTTTTTATTGA 58.167 33.333 0.00 0.00 0.00 2.57
3261 3504 9.681062 CCTCCTATACTTGACCTTTTTATTGAA 57.319 33.333 0.00 0.00 0.00 2.69
3295 3538 5.557891 AAAACATGTCTCTGAATAGCAGC 57.442 39.130 0.00 0.00 44.52 5.25
3296 3539 3.900966 ACATGTCTCTGAATAGCAGCA 57.099 42.857 0.00 0.00 44.52 4.41
3297 3540 4.212143 ACATGTCTCTGAATAGCAGCAA 57.788 40.909 0.00 0.00 44.52 3.91
3298 3541 4.190001 ACATGTCTCTGAATAGCAGCAAG 58.810 43.478 0.00 0.00 44.52 4.01
3299 3542 2.625737 TGTCTCTGAATAGCAGCAAGC 58.374 47.619 0.00 0.00 44.52 4.01
3315 3558 7.350110 GCAGCAAGCAAATATAAACAAAAGA 57.650 32.000 0.00 0.00 44.79 2.52
3316 3559 7.795859 GCAGCAAGCAAATATAAACAAAAGAA 58.204 30.769 0.00 0.00 44.79 2.52
3317 3560 8.281893 GCAGCAAGCAAATATAAACAAAAGAAA 58.718 29.630 0.00 0.00 44.79 2.52
3324 3567 9.249844 GCAAATATAAACAAAAGAAAATGACGC 57.750 29.630 0.00 0.00 0.00 5.19
3327 3570 8.911247 ATATAAACAAAAGAAAATGACGCTCC 57.089 30.769 0.00 0.00 0.00 4.70
3328 3571 4.647424 AACAAAAGAAAATGACGCTCCA 57.353 36.364 0.00 0.00 0.00 3.86
3329 3572 4.647424 ACAAAAGAAAATGACGCTCCAA 57.353 36.364 0.00 0.00 0.00 3.53
3330 3573 4.610945 ACAAAAGAAAATGACGCTCCAAG 58.389 39.130 0.00 0.00 0.00 3.61
3331 3574 4.338118 ACAAAAGAAAATGACGCTCCAAGA 59.662 37.500 0.00 0.00 0.00 3.02
3332 3575 5.163561 ACAAAAGAAAATGACGCTCCAAGAA 60.164 36.000 0.00 0.00 0.00 2.52
3333 3576 5.514274 AAAGAAAATGACGCTCCAAGAAA 57.486 34.783 0.00 0.00 0.00 2.52
3334 3577 5.514274 AAGAAAATGACGCTCCAAGAAAA 57.486 34.783 0.00 0.00 0.00 2.29
3335 3578 5.514274 AGAAAATGACGCTCCAAGAAAAA 57.486 34.783 0.00 0.00 0.00 1.94
3336 3579 6.089249 AGAAAATGACGCTCCAAGAAAAAT 57.911 33.333 0.00 0.00 0.00 1.82
3337 3580 7.214467 AGAAAATGACGCTCCAAGAAAAATA 57.786 32.000 0.00 0.00 0.00 1.40
3338 3581 7.084486 AGAAAATGACGCTCCAAGAAAAATAC 58.916 34.615 0.00 0.00 0.00 1.89
3339 3582 5.957842 AATGACGCTCCAAGAAAAATACA 57.042 34.783 0.00 0.00 0.00 2.29
3340 3583 6.515272 AATGACGCTCCAAGAAAAATACAT 57.485 33.333 0.00 0.00 0.00 2.29
3341 3584 7.624360 AATGACGCTCCAAGAAAAATACATA 57.376 32.000 0.00 0.00 0.00 2.29
3342 3585 7.807977 ATGACGCTCCAAGAAAAATACATAT 57.192 32.000 0.00 0.00 0.00 1.78
3343 3586 7.246674 TGACGCTCCAAGAAAAATACATATC 57.753 36.000 0.00 0.00 0.00 1.63
3344 3587 6.821160 TGACGCTCCAAGAAAAATACATATCA 59.179 34.615 0.00 0.00 0.00 2.15
3345 3588 7.498900 TGACGCTCCAAGAAAAATACATATCAT 59.501 33.333 0.00 0.00 0.00 2.45
3346 3589 7.642669 ACGCTCCAAGAAAAATACATATCATG 58.357 34.615 0.00 0.00 0.00 3.07
3347 3590 7.283127 ACGCTCCAAGAAAAATACATATCATGT 59.717 33.333 0.00 0.00 46.92 3.21
3348 3591 7.588854 CGCTCCAAGAAAAATACATATCATGTG 59.411 37.037 2.07 0.00 44.60 3.21
3349 3592 7.864379 GCTCCAAGAAAAATACATATCATGTGG 59.136 37.037 2.07 0.00 44.60 4.17
3350 3593 8.821686 TCCAAGAAAAATACATATCATGTGGT 57.178 30.769 2.07 0.00 44.60 4.16
3351 3594 8.685427 TCCAAGAAAAATACATATCATGTGGTG 58.315 33.333 2.07 0.00 44.60 4.17
3352 3595 8.685427 CCAAGAAAAATACATATCATGTGGTGA 58.315 33.333 2.07 0.00 44.60 4.02
3386 3629 5.988310 TCTCCAAGTAAAGTTACCGATGA 57.012 39.130 0.00 0.00 34.19 2.92
3387 3630 6.349243 TCTCCAAGTAAAGTTACCGATGAA 57.651 37.500 0.00 0.00 34.19 2.57
3388 3631 6.161381 TCTCCAAGTAAAGTTACCGATGAAC 58.839 40.000 0.00 0.00 34.19 3.18
3389 3632 4.925054 TCCAAGTAAAGTTACCGATGAACG 59.075 41.667 0.00 0.00 42.18 3.95
3390 3633 4.925054 CCAAGTAAAGTTACCGATGAACGA 59.075 41.667 0.00 0.00 45.77 3.85
3391 3634 5.406175 CCAAGTAAAGTTACCGATGAACGAA 59.594 40.000 0.00 0.00 45.77 3.85
3392 3635 6.400727 CCAAGTAAAGTTACCGATGAACGAAG 60.401 42.308 0.00 0.00 45.77 3.79
3393 3636 6.017400 AGTAAAGTTACCGATGAACGAAGA 57.983 37.500 0.00 0.00 45.77 2.87
3394 3637 5.860716 AGTAAAGTTACCGATGAACGAAGAC 59.139 40.000 0.00 0.00 45.77 3.01
3395 3638 2.860062 AGTTACCGATGAACGAAGACG 58.140 47.619 0.00 0.00 45.77 4.18
3396 3639 2.485426 AGTTACCGATGAACGAAGACGA 59.515 45.455 0.00 0.00 45.77 4.20
3397 3640 3.058016 AGTTACCGATGAACGAAGACGAA 60.058 43.478 0.00 0.00 45.77 3.85
3398 3641 2.427232 ACCGATGAACGAAGACGAAA 57.573 45.000 0.00 0.00 45.77 3.46
3399 3642 2.325761 ACCGATGAACGAAGACGAAAG 58.674 47.619 0.00 0.00 45.77 2.62
3400 3643 2.030540 ACCGATGAACGAAGACGAAAGA 60.031 45.455 0.00 0.00 45.77 2.52
3401 3644 2.594654 CCGATGAACGAAGACGAAAGAG 59.405 50.000 0.00 0.00 45.77 2.85
3402 3645 2.594654 CGATGAACGAAGACGAAAGAGG 59.405 50.000 0.00 0.00 45.77 3.69
3403 3646 2.433868 TGAACGAAGACGAAAGAGGG 57.566 50.000 0.00 0.00 42.66 4.30
3404 3647 1.000506 TGAACGAAGACGAAAGAGGGG 59.999 52.381 0.00 0.00 42.66 4.79
3405 3648 1.271656 GAACGAAGACGAAAGAGGGGA 59.728 52.381 0.00 0.00 42.66 4.81
3406 3649 1.558233 ACGAAGACGAAAGAGGGGAT 58.442 50.000 0.00 0.00 42.66 3.85
3407 3650 1.204941 ACGAAGACGAAAGAGGGGATG 59.795 52.381 0.00 0.00 42.66 3.51
3408 3651 1.657822 GAAGACGAAAGAGGGGATGC 58.342 55.000 0.00 0.00 0.00 3.91
3409 3652 0.253327 AAGACGAAAGAGGGGATGCC 59.747 55.000 0.00 0.00 0.00 4.40
3410 3653 0.618968 AGACGAAAGAGGGGATGCCT 60.619 55.000 2.19 0.00 0.00 4.75
3411 3654 0.253327 GACGAAAGAGGGGATGCCTT 59.747 55.000 2.19 0.00 0.00 4.35
3412 3655 0.253327 ACGAAAGAGGGGATGCCTTC 59.747 55.000 7.35 7.35 0.00 3.46
3413 3656 0.464554 CGAAAGAGGGGATGCCTTCC 60.465 60.000 11.99 0.00 44.62 3.46
3414 3657 0.464554 GAAAGAGGGGATGCCTTCCG 60.465 60.000 11.99 0.00 46.52 4.30
3415 3658 1.926426 AAAGAGGGGATGCCTTCCGG 61.926 60.000 11.99 0.00 46.52 5.14
3416 3659 3.878667 GAGGGGATGCCTTCCGGG 61.879 72.222 3.75 0.00 46.52 5.73
3434 3677 3.596362 GGCATCCCCAAGCTTAGTT 57.404 52.632 0.00 0.00 0.00 2.24
3435 3678 1.106285 GGCATCCCCAAGCTTAGTTG 58.894 55.000 0.00 0.00 0.00 3.16
3436 3679 0.457443 GCATCCCCAAGCTTAGTTGC 59.543 55.000 0.00 4.73 0.00 4.17
3437 3680 1.957113 GCATCCCCAAGCTTAGTTGCT 60.957 52.381 0.00 0.00 46.40 3.91
3446 3689 2.230660 AGCTTAGTTGCTTGGTTGTCC 58.769 47.619 0.00 0.00 40.93 4.02
3447 3690 2.158608 AGCTTAGTTGCTTGGTTGTCCT 60.159 45.455 0.00 0.00 40.93 3.85
3448 3691 2.623416 GCTTAGTTGCTTGGTTGTCCTT 59.377 45.455 0.00 0.00 34.23 3.36
3449 3692 3.550842 GCTTAGTTGCTTGGTTGTCCTTG 60.551 47.826 0.00 0.00 34.23 3.61
3450 3693 2.435372 AGTTGCTTGGTTGTCCTTGA 57.565 45.000 0.00 0.00 34.23 3.02
3451 3694 2.733956 AGTTGCTTGGTTGTCCTTGAA 58.266 42.857 0.00 0.00 34.23 2.69
3452 3695 3.299503 AGTTGCTTGGTTGTCCTTGAAT 58.700 40.909 0.00 0.00 34.23 2.57
3453 3696 4.469657 AGTTGCTTGGTTGTCCTTGAATA 58.530 39.130 0.00 0.00 34.23 1.75
3454 3697 5.079643 AGTTGCTTGGTTGTCCTTGAATAT 58.920 37.500 0.00 0.00 34.23 1.28
3455 3698 5.539955 AGTTGCTTGGTTGTCCTTGAATATT 59.460 36.000 0.00 0.00 34.23 1.28
3456 3699 6.719370 AGTTGCTTGGTTGTCCTTGAATATTA 59.281 34.615 0.00 0.00 34.23 0.98
3457 3700 6.509418 TGCTTGGTTGTCCTTGAATATTAC 57.491 37.500 0.00 0.00 34.23 1.89
3458 3701 5.417580 TGCTTGGTTGTCCTTGAATATTACC 59.582 40.000 0.00 0.00 34.23 2.85
3459 3702 5.652452 GCTTGGTTGTCCTTGAATATTACCT 59.348 40.000 0.00 0.00 34.23 3.08
3460 3703 6.152831 GCTTGGTTGTCCTTGAATATTACCTT 59.847 38.462 0.00 0.00 34.23 3.50
3461 3704 7.461182 TTGGTTGTCCTTGAATATTACCTTG 57.539 36.000 0.00 0.00 34.23 3.61
3462 3705 5.949354 TGGTTGTCCTTGAATATTACCTTGG 59.051 40.000 0.00 0.00 34.23 3.61
3463 3706 5.359860 GGTTGTCCTTGAATATTACCTTGGG 59.640 44.000 0.00 0.00 0.00 4.12
3464 3707 5.789574 TGTCCTTGAATATTACCTTGGGT 57.210 39.130 0.00 0.00 40.16 4.51
3465 3708 6.147437 TGTCCTTGAATATTACCTTGGGTT 57.853 37.500 0.00 0.00 37.09 4.11
3466 3709 5.949354 TGTCCTTGAATATTACCTTGGGTTG 59.051 40.000 0.00 0.00 37.09 3.77
3467 3710 4.953579 TCCTTGAATATTACCTTGGGTTGC 59.046 41.667 0.00 0.00 37.09 4.17
3468 3711 4.099419 CCTTGAATATTACCTTGGGTTGCC 59.901 45.833 0.00 0.00 37.09 4.52
3469 3712 4.601406 TGAATATTACCTTGGGTTGCCT 57.399 40.909 0.00 0.00 37.09 4.75
3470 3713 4.941713 TGAATATTACCTTGGGTTGCCTT 58.058 39.130 0.00 0.00 37.09 4.35
3471 3714 4.709397 TGAATATTACCTTGGGTTGCCTTG 59.291 41.667 0.00 0.00 37.09 3.61
3472 3715 1.937191 ATTACCTTGGGTTGCCTTGG 58.063 50.000 0.00 0.00 37.09 3.61
3473 3716 0.558712 TTACCTTGGGTTGCCTTGGT 59.441 50.000 0.00 0.00 37.09 3.67
3474 3717 0.111639 TACCTTGGGTTGCCTTGGTC 59.888 55.000 0.00 0.00 37.09 4.02
3475 3718 1.152567 CCTTGGGTTGCCTTGGTCA 60.153 57.895 0.00 0.00 0.00 4.02
3476 3719 0.542702 CCTTGGGTTGCCTTGGTCAT 60.543 55.000 0.00 0.00 0.00 3.06
3477 3720 0.890683 CTTGGGTTGCCTTGGTCATC 59.109 55.000 0.00 0.00 0.00 2.92
3478 3721 0.541764 TTGGGTTGCCTTGGTCATCC 60.542 55.000 0.00 0.00 0.00 3.51
3479 3722 1.682344 GGGTTGCCTTGGTCATCCC 60.682 63.158 11.57 11.57 36.59 3.85
3480 3723 1.682344 GGTTGCCTTGGTCATCCCC 60.682 63.158 0.00 0.00 0.00 4.81
3481 3724 1.076549 GTTGCCTTGGTCATCCCCA 59.923 57.895 0.00 0.00 0.00 4.96
3482 3725 0.541764 GTTGCCTTGGTCATCCCCAA 60.542 55.000 0.00 0.00 42.16 4.12
3488 3731 2.806945 TTGGTCATCCCCAAGCTTAG 57.193 50.000 0.00 0.00 39.56 2.18
3489 3732 0.918983 TGGTCATCCCCAAGCTTAGG 59.081 55.000 3.60 3.60 0.00 2.69
3490 3733 0.466372 GGTCATCCCCAAGCTTAGGC 60.466 60.000 5.25 0.00 39.06 3.93
3510 3753 3.347216 GCTCTTGCCACTCTTTATTCCA 58.653 45.455 0.00 0.00 0.00 3.53
3511 3754 3.950395 GCTCTTGCCACTCTTTATTCCAT 59.050 43.478 0.00 0.00 0.00 3.41
3512 3755 5.126067 GCTCTTGCCACTCTTTATTCCATA 58.874 41.667 0.00 0.00 0.00 2.74
3513 3756 5.238214 GCTCTTGCCACTCTTTATTCCATAG 59.762 44.000 0.00 0.00 0.00 2.23
3514 3757 6.313519 TCTTGCCACTCTTTATTCCATAGT 57.686 37.500 0.00 0.00 0.00 2.12
3515 3758 6.349300 TCTTGCCACTCTTTATTCCATAGTC 58.651 40.000 0.00 0.00 0.00 2.59
3516 3759 5.036117 TGCCACTCTTTATTCCATAGTCC 57.964 43.478 0.00 0.00 0.00 3.85
3517 3760 4.473196 TGCCACTCTTTATTCCATAGTCCA 59.527 41.667 0.00 0.00 0.00 4.02
3518 3761 5.132648 TGCCACTCTTTATTCCATAGTCCAT 59.867 40.000 0.00 0.00 0.00 3.41
3519 3762 5.703130 GCCACTCTTTATTCCATAGTCCATC 59.297 44.000 0.00 0.00 0.00 3.51
3520 3763 5.928839 CCACTCTTTATTCCATAGTCCATCG 59.071 44.000 0.00 0.00 0.00 3.84
3521 3764 6.239317 CCACTCTTTATTCCATAGTCCATCGA 60.239 42.308 0.00 0.00 0.00 3.59
3522 3765 7.210174 CACTCTTTATTCCATAGTCCATCGAA 58.790 38.462 0.00 0.00 0.00 3.71
3523 3766 7.875041 CACTCTTTATTCCATAGTCCATCGAAT 59.125 37.037 0.00 0.00 30.63 3.34
3524 3767 8.091449 ACTCTTTATTCCATAGTCCATCGAATC 58.909 37.037 0.00 0.00 28.77 2.52
3525 3768 8.195165 TCTTTATTCCATAGTCCATCGAATCT 57.805 34.615 0.00 0.00 28.77 2.40
3526 3769 8.651389 TCTTTATTCCATAGTCCATCGAATCTT 58.349 33.333 0.00 0.00 28.77 2.40
3527 3770 9.277783 CTTTATTCCATAGTCCATCGAATCTTT 57.722 33.333 0.00 0.00 28.77 2.52
3529 3772 9.706691 TTATTCCATAGTCCATCGAATCTTTAC 57.293 33.333 0.00 0.00 28.77 2.01
3530 3773 6.097915 TCCATAGTCCATCGAATCTTTACC 57.902 41.667 0.00 0.00 0.00 2.85
3531 3774 5.011738 TCCATAGTCCATCGAATCTTTACCC 59.988 44.000 0.00 0.00 0.00 3.69
3532 3775 5.221641 CCATAGTCCATCGAATCTTTACCCA 60.222 44.000 0.00 0.00 0.00 4.51
3533 3776 4.837093 AGTCCATCGAATCTTTACCCAA 57.163 40.909 0.00 0.00 0.00 4.12
3534 3777 5.174037 AGTCCATCGAATCTTTACCCAAA 57.826 39.130 0.00 0.00 0.00 3.28
3535 3778 5.566469 AGTCCATCGAATCTTTACCCAAAA 58.434 37.500 0.00 0.00 0.00 2.44
3536 3779 5.414765 AGTCCATCGAATCTTTACCCAAAAC 59.585 40.000 0.00 0.00 0.00 2.43
3537 3780 5.414765 GTCCATCGAATCTTTACCCAAAACT 59.585 40.000 0.00 0.00 0.00 2.66
3538 3781 6.007703 TCCATCGAATCTTTACCCAAAACTT 58.992 36.000 0.00 0.00 0.00 2.66
3539 3782 7.120138 GTCCATCGAATCTTTACCCAAAACTTA 59.880 37.037 0.00 0.00 0.00 2.24
3540 3783 7.666388 TCCATCGAATCTTTACCCAAAACTTAA 59.334 33.333 0.00 0.00 0.00 1.85
3541 3784 8.301002 CCATCGAATCTTTACCCAAAACTTAAA 58.699 33.333 0.00 0.00 0.00 1.52
3542 3785 9.685828 CATCGAATCTTTACCCAAAACTTAAAA 57.314 29.630 0.00 0.00 0.00 1.52
3544 3787 9.518906 TCGAATCTTTACCCAAAACTTAAAAAC 57.481 29.630 0.00 0.00 0.00 2.43
3545 3788 9.524106 CGAATCTTTACCCAAAACTTAAAAACT 57.476 29.630 0.00 0.00 0.00 2.66
3549 3792 9.642327 TCTTTACCCAAAACTTAAAAACTTCAC 57.358 29.630 0.00 0.00 0.00 3.18
3550 3793 9.425577 CTTTACCCAAAACTTAAAAACTTCACA 57.574 29.630 0.00 0.00 0.00 3.58
3551 3794 9.774413 TTTACCCAAAACTTAAAAACTTCACAA 57.226 25.926 0.00 0.00 0.00 3.33
3552 3795 7.661127 ACCCAAAACTTAAAAACTTCACAAC 57.339 32.000 0.00 0.00 0.00 3.32
3553 3796 7.217906 ACCCAAAACTTAAAAACTTCACAACA 58.782 30.769 0.00 0.00 0.00 3.33
3554 3797 7.171848 ACCCAAAACTTAAAAACTTCACAACAC 59.828 33.333 0.00 0.00 0.00 3.32
3555 3798 7.171678 CCCAAAACTTAAAAACTTCACAACACA 59.828 33.333 0.00 0.00 0.00 3.72
3556 3799 8.552034 CCAAAACTTAAAAACTTCACAACACAA 58.448 29.630 0.00 0.00 0.00 3.33
3557 3800 9.922305 CAAAACTTAAAAACTTCACAACACAAA 57.078 25.926 0.00 0.00 0.00 2.83
3559 3802 9.923786 AAACTTAAAAACTTCACAACACAAAAC 57.076 25.926 0.00 0.00 0.00 2.43
3560 3803 8.880878 ACTTAAAAACTTCACAACACAAAACT 57.119 26.923 0.00 0.00 0.00 2.66
3561 3804 8.974408 ACTTAAAAACTTCACAACACAAAACTC 58.026 29.630 0.00 0.00 0.00 3.01
3562 3805 8.873215 TTAAAAACTTCACAACACAAAACTCA 57.127 26.923 0.00 0.00 0.00 3.41
3563 3806 7.778470 AAAAACTTCACAACACAAAACTCAA 57.222 28.000 0.00 0.00 0.00 3.02
3564 3807 6.763303 AAACTTCACAACACAAAACTCAAC 57.237 33.333 0.00 0.00 0.00 3.18
3565 3808 5.446143 ACTTCACAACACAAAACTCAACA 57.554 34.783 0.00 0.00 0.00 3.33
3566 3809 5.460646 ACTTCACAACACAAAACTCAACAG 58.539 37.500 0.00 0.00 0.00 3.16
3567 3810 5.240623 ACTTCACAACACAAAACTCAACAGA 59.759 36.000 0.00 0.00 0.00 3.41
3568 3811 5.697473 TCACAACACAAAACTCAACAGAA 57.303 34.783 0.00 0.00 0.00 3.02
3569 3812 6.078202 TCACAACACAAAACTCAACAGAAA 57.922 33.333 0.00 0.00 0.00 2.52
3570 3813 6.507900 TCACAACACAAAACTCAACAGAAAA 58.492 32.000 0.00 0.00 0.00 2.29
3571 3814 7.151308 TCACAACACAAAACTCAACAGAAAAT 58.849 30.769 0.00 0.00 0.00 1.82
3572 3815 7.328249 TCACAACACAAAACTCAACAGAAAATC 59.672 33.333 0.00 0.00 0.00 2.17
3573 3816 7.329226 CACAACACAAAACTCAACAGAAAATCT 59.671 33.333 0.00 0.00 0.00 2.40
3574 3817 7.872483 ACAACACAAAACTCAACAGAAAATCTT 59.128 29.630 0.00 0.00 0.00 2.40
3575 3818 9.352784 CAACACAAAACTCAACAGAAAATCTTA 57.647 29.630 0.00 0.00 0.00 2.10
3577 3820 9.520204 ACACAAAACTCAACAGAAAATCTTATG 57.480 29.630 0.00 0.00 0.00 1.90
3578 3821 9.734620 CACAAAACTCAACAGAAAATCTTATGA 57.265 29.630 0.00 0.00 0.00 2.15
3579 3822 9.956720 ACAAAACTCAACAGAAAATCTTATGAG 57.043 29.630 13.56 13.56 40.10 2.90
3580 3823 9.403110 CAAAACTCAACAGAAAATCTTATGAGG 57.597 33.333 17.04 6.01 39.28 3.86
3581 3824 8.697507 AAACTCAACAGAAAATCTTATGAGGT 57.302 30.769 17.04 11.45 37.85 3.85
3582 3825 7.913674 ACTCAACAGAAAATCTTATGAGGTC 57.086 36.000 17.04 0.00 39.28 3.85
3583 3826 6.881602 ACTCAACAGAAAATCTTATGAGGTCC 59.118 38.462 17.04 0.00 39.28 4.46
3584 3827 5.874810 TCAACAGAAAATCTTATGAGGTCCG 59.125 40.000 0.00 0.00 0.00 4.79
3585 3828 5.422214 ACAGAAAATCTTATGAGGTCCGT 57.578 39.130 0.00 0.00 0.00 4.69
3586 3829 5.805728 ACAGAAAATCTTATGAGGTCCGTT 58.194 37.500 0.00 0.00 0.00 4.44
3587 3830 6.942976 ACAGAAAATCTTATGAGGTCCGTTA 58.057 36.000 0.00 0.00 0.00 3.18
3588 3831 7.042335 ACAGAAAATCTTATGAGGTCCGTTAG 58.958 38.462 0.00 0.00 0.00 2.34
3589 3832 7.042335 CAGAAAATCTTATGAGGTCCGTTAGT 58.958 38.462 0.00 0.00 0.00 2.24
3590 3833 8.195436 CAGAAAATCTTATGAGGTCCGTTAGTA 58.805 37.037 0.00 0.00 0.00 1.82
3591 3834 8.925338 AGAAAATCTTATGAGGTCCGTTAGTAT 58.075 33.333 0.00 0.00 0.00 2.12
3595 3838 9.584008 AATCTTATGAGGTCCGTTAGTATAAGA 57.416 33.333 0.00 0.00 38.93 2.10
3596 3839 8.985315 TCTTATGAGGTCCGTTAGTATAAGAA 57.015 34.615 0.00 0.00 34.53 2.52
3597 3840 9.412460 TCTTATGAGGTCCGTTAGTATAAGAAA 57.588 33.333 0.00 0.00 34.53 2.52
3630 3873 6.931838 CCACTTAGGTACTATTGTGAACTCA 58.068 40.000 9.79 0.00 43.38 3.41
3631 3874 7.556844 CCACTTAGGTACTATTGTGAACTCAT 58.443 38.462 9.79 0.00 43.38 2.90
3632 3875 8.041323 CCACTTAGGTACTATTGTGAACTCATT 58.959 37.037 9.79 0.00 43.38 2.57
3670 3913 9.826574 TTGGTGTTATATCTACTGTATTCCAAC 57.173 33.333 0.00 0.00 0.00 3.77
3671 3914 9.209048 TGGTGTTATATCTACTGTATTCCAACT 57.791 33.333 0.00 0.00 0.00 3.16
3677 3920 8.783660 ATATCTACTGTATTCCAACTTCTCCA 57.216 34.615 0.00 0.00 0.00 3.86
3678 3921 7.682787 ATCTACTGTATTCCAACTTCTCCAT 57.317 36.000 0.00 0.00 0.00 3.41
3679 3922 6.878317 TCTACTGTATTCCAACTTCTCCATG 58.122 40.000 0.00 0.00 0.00 3.66
3680 3923 4.848357 ACTGTATTCCAACTTCTCCATGG 58.152 43.478 4.97 4.97 35.49 3.66
3681 3924 4.289672 ACTGTATTCCAACTTCTCCATGGT 59.710 41.667 12.58 0.00 35.66 3.55
3682 3925 5.222130 ACTGTATTCCAACTTCTCCATGGTT 60.222 40.000 12.58 0.00 35.66 3.67
3683 3926 5.253330 TGTATTCCAACTTCTCCATGGTTC 58.747 41.667 12.58 0.00 35.66 3.62
3684 3927 3.874383 TTCCAACTTCTCCATGGTTCA 57.126 42.857 12.58 0.00 35.66 3.18
3685 3928 4.387026 TTCCAACTTCTCCATGGTTCAT 57.613 40.909 12.58 0.00 35.66 2.57
3686 3929 5.512942 TTCCAACTTCTCCATGGTTCATA 57.487 39.130 12.58 0.00 35.66 2.15
3687 3930 4.843728 TCCAACTTCTCCATGGTTCATAC 58.156 43.478 12.58 0.00 35.66 2.39
3688 3931 3.947834 CCAACTTCTCCATGGTTCATACC 59.052 47.826 12.58 0.00 45.26 2.73
3703 3946 7.526142 GGTTCATACCATCAGATACTACTCA 57.474 40.000 0.00 0.00 44.36 3.41
3704 3947 8.128322 GGTTCATACCATCAGATACTACTCAT 57.872 38.462 0.00 0.00 44.36 2.90
3705 3948 9.244292 GGTTCATACCATCAGATACTACTCATA 57.756 37.037 0.00 0.00 44.36 2.15
3712 3955 9.766754 ACCATCAGATACTACTCATAGATTCAT 57.233 33.333 0.00 0.00 32.23 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 141 6.453943 ACAACAATGTGCAAACATTAGCATA 58.546 32.000 3.91 0.00 43.44 3.14
223 233 6.261826 CCAAGCTTGATAGGTATCTTCCTTTG 59.738 42.308 28.05 0.15 38.86 2.77
237 247 8.664669 TGTATCTATATCACCCAAGCTTGATA 57.335 34.615 28.05 17.09 38.70 2.15
244 254 8.908786 ACACATTTGTATCTATATCACCCAAG 57.091 34.615 0.00 0.00 32.60 3.61
475 509 0.609151 TGGGTTCTATGCCGTCGAAA 59.391 50.000 0.00 0.00 0.00 3.46
478 512 1.520787 GGTGGGTTCTATGCCGTCG 60.521 63.158 0.00 0.00 0.00 5.12
482 516 2.706190 ACTATGAGGTGGGTTCTATGCC 59.294 50.000 0.00 0.00 0.00 4.40
499 533 6.791867 TGTTGTAATACTCCTCTGCACTAT 57.208 37.500 0.00 0.00 0.00 2.12
535 569 5.506708 ACCTTTCTACAATATTTCGGGCTT 58.493 37.500 0.00 0.00 0.00 4.35
712 754 5.837437 TGCGTTCCAATGTTTCTTGTATTT 58.163 33.333 0.00 0.00 0.00 1.40
732 774 1.879796 GCCTAATTCTCCCTCCATGCG 60.880 57.143 0.00 0.00 0.00 4.73
784 826 3.563808 CCAGAAATTTGTCCACTCGTTCA 59.436 43.478 0.00 0.00 0.00 3.18
908 955 9.357652 TGAGATGCAATTGAAGCTTATTTAAAC 57.642 29.630 5.48 0.00 0.00 2.01
1003 1087 3.159472 ACGTACTTGAGGTGTCCACATA 58.841 45.455 0.00 0.00 0.00 2.29
1078 1165 8.947115 AGACAACTCATACAAGGCTTTAATAAC 58.053 33.333 0.00 0.00 0.00 1.89
1255 1342 9.793259 ACTTTTGGATAACATTACTTCAAGAGA 57.207 29.630 0.00 0.00 0.00 3.10
1308 1395 5.298527 TGCCTTCTCACATTGAATCATCATC 59.701 40.000 0.00 0.00 34.96 2.92
1309 1396 5.067413 GTGCCTTCTCACATTGAATCATCAT 59.933 40.000 0.00 0.00 36.97 2.45
1310 1397 4.397103 GTGCCTTCTCACATTGAATCATCA 59.603 41.667 0.00 0.00 36.97 3.07
1377 1464 6.899393 ATTCAGCATTAACAAGGAGTTCAA 57.101 33.333 0.00 0.00 41.64 2.69
1690 1790 0.538287 GCCTCACCAAAGCCTTCAGT 60.538 55.000 0.00 0.00 0.00 3.41
1876 1976 4.210331 AGTATCATTGCAAAGGGATCACC 58.790 43.478 1.71 0.00 40.67 4.02
1896 1996 3.944015 GCTGGCTATTGACATCTTGAAGT 59.056 43.478 0.00 0.00 0.00 3.01
1923 2023 6.712276 TGTACCCACATATTGTGTCACATTA 58.288 36.000 6.48 8.22 46.45 1.90
1973 2073 1.466167 CTTGCACTGATTCTTGTCCCG 59.534 52.381 0.00 0.00 0.00 5.14
1976 2076 3.668447 TCCTCTTGCACTGATTCTTGTC 58.332 45.455 0.00 0.00 0.00 3.18
1984 2084 1.829849 CTGAGGATCCTCTTGCACTGA 59.170 52.381 35.84 16.76 43.12 3.41
1988 2088 0.540454 CTGCTGAGGATCCTCTTGCA 59.460 55.000 36.82 36.82 44.07 4.08
2144 2248 5.360591 AGAGCATTTTTAGGACATACTCCG 58.639 41.667 0.00 0.00 45.10 4.63
2219 2334 7.283127 GCCAATCAGAGGTAGATGTTATCAAAA 59.717 37.037 0.00 0.00 0.00 2.44
2250 2367 8.271312 AGTAGAGATTACAGATTCGTATAGCC 57.729 38.462 0.00 0.00 0.00 3.93
2400 2589 6.129168 GGAACATATACTACGAATGTCAAGCG 60.129 42.308 0.00 0.00 32.80 4.68
2731 2960 1.703411 ACCACACCACCCATCTTTTG 58.297 50.000 0.00 0.00 0.00 2.44
2793 3022 3.743899 GCAAGTCCAAAGGCCAATTTCAA 60.744 43.478 5.01 0.00 0.00 2.69
3040 3278 6.128742 GCAGAACCAGTTTTAAATTCATGCAG 60.129 38.462 0.00 0.00 0.00 4.41
3104 3342 6.887013 TCAGTTACCTTTACAGTGTTTGGTA 58.113 36.000 0.00 9.15 0.00 3.25
3148 3386 7.595311 AACAGTCCATTTGTTGTTTTCTTTC 57.405 32.000 0.00 0.00 37.38 2.62
3152 3390 5.751509 GGGTAACAGTCCATTTGTTGTTTTC 59.248 40.000 1.18 0.00 39.03 2.29
3269 3512 8.997323 GCTGCTATTCAGAGACATGTTTTATAT 58.003 33.333 0.00 0.00 45.72 0.86
3270 3513 7.986889 TGCTGCTATTCAGAGACATGTTTTATA 59.013 33.333 0.00 0.00 45.72 0.98
3271 3514 6.825213 TGCTGCTATTCAGAGACATGTTTTAT 59.175 34.615 0.00 0.00 45.72 1.40
3272 3515 6.172630 TGCTGCTATTCAGAGACATGTTTTA 58.827 36.000 0.00 0.00 45.72 1.52
3273 3516 5.005740 TGCTGCTATTCAGAGACATGTTTT 58.994 37.500 0.00 0.00 45.72 2.43
3274 3517 4.582869 TGCTGCTATTCAGAGACATGTTT 58.417 39.130 0.00 0.00 45.72 2.83
3275 3518 4.212143 TGCTGCTATTCAGAGACATGTT 57.788 40.909 0.00 0.00 45.72 2.71
3276 3519 3.900966 TGCTGCTATTCAGAGACATGT 57.099 42.857 0.00 0.00 45.72 3.21
3277 3520 3.002451 GCTTGCTGCTATTCAGAGACATG 59.998 47.826 0.00 0.00 45.72 3.21
3278 3521 3.204526 GCTTGCTGCTATTCAGAGACAT 58.795 45.455 0.00 0.00 45.72 3.06
3279 3522 2.027837 TGCTTGCTGCTATTCAGAGACA 60.028 45.455 0.00 0.00 45.72 3.41
3280 3523 2.625737 TGCTTGCTGCTATTCAGAGAC 58.374 47.619 0.00 0.00 45.72 3.36
3281 3524 3.339253 TTGCTTGCTGCTATTCAGAGA 57.661 42.857 0.00 0.00 45.72 3.10
3282 3525 4.634184 ATTTGCTTGCTGCTATTCAGAG 57.366 40.909 0.00 0.00 45.72 3.35
3283 3526 7.806409 TTATATTTGCTTGCTGCTATTCAGA 57.194 32.000 0.00 0.00 45.72 3.27
3284 3527 7.916977 TGTTTATATTTGCTTGCTGCTATTCAG 59.083 33.333 0.00 0.00 45.62 3.02
3285 3528 7.770201 TGTTTATATTTGCTTGCTGCTATTCA 58.230 30.769 0.00 0.00 43.37 2.57
3286 3529 8.633075 TTGTTTATATTTGCTTGCTGCTATTC 57.367 30.769 0.00 0.00 43.37 1.75
3287 3530 9.434420 TTTTGTTTATATTTGCTTGCTGCTATT 57.566 25.926 0.00 0.00 43.37 1.73
3288 3531 9.090692 CTTTTGTTTATATTTGCTTGCTGCTAT 57.909 29.630 0.00 0.00 43.37 2.97
3289 3532 8.303156 TCTTTTGTTTATATTTGCTTGCTGCTA 58.697 29.630 0.00 0.00 43.37 3.49
3290 3533 7.153985 TCTTTTGTTTATATTTGCTTGCTGCT 58.846 30.769 0.00 0.00 43.37 4.24
3291 3534 7.350110 TCTTTTGTTTATATTTGCTTGCTGC 57.650 32.000 0.00 0.00 43.25 5.25
3298 3541 9.249844 GCGTCATTTTCTTTTGTTTATATTTGC 57.750 29.630 0.00 0.00 0.00 3.68
3301 3544 9.353999 GGAGCGTCATTTTCTTTTGTTTATATT 57.646 29.630 0.00 0.00 0.00 1.28
3302 3545 8.519526 TGGAGCGTCATTTTCTTTTGTTTATAT 58.480 29.630 0.00 0.00 0.00 0.86
3303 3546 7.877003 TGGAGCGTCATTTTCTTTTGTTTATA 58.123 30.769 0.00 0.00 0.00 0.98
3304 3547 6.744112 TGGAGCGTCATTTTCTTTTGTTTAT 58.256 32.000 0.00 0.00 0.00 1.40
3305 3548 6.137794 TGGAGCGTCATTTTCTTTTGTTTA 57.862 33.333 0.00 0.00 0.00 2.01
3306 3549 5.004922 TGGAGCGTCATTTTCTTTTGTTT 57.995 34.783 0.00 0.00 0.00 2.83
3307 3550 4.647424 TGGAGCGTCATTTTCTTTTGTT 57.353 36.364 0.00 0.00 0.00 2.83
3308 3551 4.338118 TCTTGGAGCGTCATTTTCTTTTGT 59.662 37.500 0.00 0.00 0.00 2.83
3309 3552 4.858935 TCTTGGAGCGTCATTTTCTTTTG 58.141 39.130 0.00 0.00 0.00 2.44
3310 3553 5.514274 TTCTTGGAGCGTCATTTTCTTTT 57.486 34.783 0.00 0.00 0.00 2.27
3311 3554 5.514274 TTTCTTGGAGCGTCATTTTCTTT 57.486 34.783 0.00 0.00 0.00 2.52
3312 3555 5.514274 TTTTCTTGGAGCGTCATTTTCTT 57.486 34.783 0.00 0.00 0.00 2.52
3313 3556 5.514274 TTTTTCTTGGAGCGTCATTTTCT 57.486 34.783 0.00 0.00 0.00 2.52
3314 3557 6.861055 TGTATTTTTCTTGGAGCGTCATTTTC 59.139 34.615 0.00 0.00 0.00 2.29
3315 3558 6.744112 TGTATTTTTCTTGGAGCGTCATTTT 58.256 32.000 0.00 0.00 0.00 1.82
3316 3559 6.325919 TGTATTTTTCTTGGAGCGTCATTT 57.674 33.333 0.00 0.00 0.00 2.32
3317 3560 5.957842 TGTATTTTTCTTGGAGCGTCATT 57.042 34.783 0.00 0.00 0.00 2.57
3318 3561 7.498900 TGATATGTATTTTTCTTGGAGCGTCAT 59.501 33.333 0.00 0.00 0.00 3.06
3319 3562 6.821160 TGATATGTATTTTTCTTGGAGCGTCA 59.179 34.615 0.00 0.00 0.00 4.35
3320 3563 7.246674 TGATATGTATTTTTCTTGGAGCGTC 57.753 36.000 0.00 0.00 0.00 5.19
3321 3564 7.283127 ACATGATATGTATTTTTCTTGGAGCGT 59.717 33.333 0.00 0.00 42.78 5.07
3322 3565 7.588854 CACATGATATGTATTTTTCTTGGAGCG 59.411 37.037 0.00 0.00 42.70 5.03
3323 3566 7.864379 CCACATGATATGTATTTTTCTTGGAGC 59.136 37.037 0.00 0.00 42.70 4.70
3324 3567 8.906867 ACCACATGATATGTATTTTTCTTGGAG 58.093 33.333 0.00 0.00 42.70 3.86
3325 3568 8.685427 CACCACATGATATGTATTTTTCTTGGA 58.315 33.333 0.00 0.00 42.70 3.53
3326 3569 8.685427 TCACCACATGATATGTATTTTTCTTGG 58.315 33.333 0.00 0.00 42.70 3.61
3360 3603 9.358406 TCATCGGTAACTTTACTTGGAGATATA 57.642 33.333 0.00 0.00 34.16 0.86
3361 3604 8.246430 TCATCGGTAACTTTACTTGGAGATAT 57.754 34.615 0.00 0.00 34.16 1.63
3362 3605 7.649533 TCATCGGTAACTTTACTTGGAGATA 57.350 36.000 0.00 0.00 34.16 1.98
3363 3606 6.540438 TCATCGGTAACTTTACTTGGAGAT 57.460 37.500 0.00 0.00 34.16 2.75
3364 3607 5.988310 TCATCGGTAACTTTACTTGGAGA 57.012 39.130 0.00 0.00 34.16 3.71
3365 3608 5.061808 CGTTCATCGGTAACTTTACTTGGAG 59.938 44.000 0.00 0.00 34.16 3.86
3366 3609 4.925054 CGTTCATCGGTAACTTTACTTGGA 59.075 41.667 0.00 0.00 34.16 3.53
3367 3610 4.925054 TCGTTCATCGGTAACTTTACTTGG 59.075 41.667 0.00 0.00 40.32 3.61
3368 3611 6.364165 TCTTCGTTCATCGGTAACTTTACTTG 59.636 38.462 0.00 0.00 40.32 3.16
3369 3612 6.364435 GTCTTCGTTCATCGGTAACTTTACTT 59.636 38.462 0.00 0.00 40.32 2.24
3370 3613 5.860716 GTCTTCGTTCATCGGTAACTTTACT 59.139 40.000 0.00 0.00 40.32 2.24
3371 3614 5.219914 CGTCTTCGTTCATCGGTAACTTTAC 60.220 44.000 0.00 0.00 40.32 2.01
3372 3615 4.853196 CGTCTTCGTTCATCGGTAACTTTA 59.147 41.667 0.00 0.00 40.32 1.85
3373 3616 3.671928 CGTCTTCGTTCATCGGTAACTTT 59.328 43.478 0.00 0.00 40.32 2.66
3374 3617 3.058016 TCGTCTTCGTTCATCGGTAACTT 60.058 43.478 0.00 0.00 40.32 2.66
3375 3618 2.485426 TCGTCTTCGTTCATCGGTAACT 59.515 45.455 0.00 0.00 40.32 2.24
3376 3619 2.855180 TCGTCTTCGTTCATCGGTAAC 58.145 47.619 0.00 0.00 40.32 2.50
3377 3620 3.557577 TTCGTCTTCGTTCATCGGTAA 57.442 42.857 0.00 0.00 40.32 2.85
3378 3621 3.189080 TCTTTCGTCTTCGTTCATCGGTA 59.811 43.478 0.00 0.00 40.32 4.02
3379 3622 2.030540 TCTTTCGTCTTCGTTCATCGGT 60.031 45.455 0.00 0.00 40.32 4.69
3380 3623 2.592194 TCTTTCGTCTTCGTTCATCGG 58.408 47.619 0.00 0.00 40.32 4.18
3381 3624 2.594654 CCTCTTTCGTCTTCGTTCATCG 59.405 50.000 0.00 0.00 41.41 3.84
3382 3625 2.924290 CCCTCTTTCGTCTTCGTTCATC 59.076 50.000 0.00 0.00 38.33 2.92
3383 3626 2.353803 CCCCTCTTTCGTCTTCGTTCAT 60.354 50.000 0.00 0.00 38.33 2.57
3384 3627 1.000506 CCCCTCTTTCGTCTTCGTTCA 59.999 52.381 0.00 0.00 38.33 3.18
3385 3628 1.271656 TCCCCTCTTTCGTCTTCGTTC 59.728 52.381 0.00 0.00 38.33 3.95
3386 3629 1.335145 TCCCCTCTTTCGTCTTCGTT 58.665 50.000 0.00 0.00 38.33 3.85
3387 3630 1.204941 CATCCCCTCTTTCGTCTTCGT 59.795 52.381 0.00 0.00 38.33 3.85
3388 3631 1.927895 CATCCCCTCTTTCGTCTTCG 58.072 55.000 0.00 0.00 38.55 3.79
3389 3632 1.657822 GCATCCCCTCTTTCGTCTTC 58.342 55.000 0.00 0.00 0.00 2.87
3390 3633 0.253327 GGCATCCCCTCTTTCGTCTT 59.747 55.000 0.00 0.00 0.00 3.01
3391 3634 0.618968 AGGCATCCCCTCTTTCGTCT 60.619 55.000 0.00 0.00 41.21 4.18
3392 3635 0.253327 AAGGCATCCCCTCTTTCGTC 59.747 55.000 0.00 0.00 45.62 4.20
3393 3636 0.253327 GAAGGCATCCCCTCTTTCGT 59.747 55.000 0.00 0.00 45.62 3.85
3394 3637 0.464554 GGAAGGCATCCCCTCTTTCG 60.465 60.000 0.00 0.00 45.62 3.46
3395 3638 0.464554 CGGAAGGCATCCCCTCTTTC 60.465 60.000 2.68 0.00 45.62 2.62
3396 3639 1.609783 CGGAAGGCATCCCCTCTTT 59.390 57.895 2.68 0.00 45.62 2.52
3397 3640 3.324713 CGGAAGGCATCCCCTCTT 58.675 61.111 2.68 0.00 45.62 2.85
3415 3658 0.033109 AACTAAGCTTGGGGATGCCC 60.033 55.000 16.99 16.99 44.51 5.36
3416 3659 1.106285 CAACTAAGCTTGGGGATGCC 58.894 55.000 14.86 0.00 0.00 4.40
3417 3660 0.457443 GCAACTAAGCTTGGGGATGC 59.543 55.000 14.86 16.20 0.00 3.91
3418 3661 2.134789 AGCAACTAAGCTTGGGGATG 57.865 50.000 14.86 10.76 43.70 3.51
3427 3670 2.230660 AGGACAACCAAGCAACTAAGC 58.769 47.619 0.00 0.00 38.94 3.09
3428 3671 3.882888 TCAAGGACAACCAAGCAACTAAG 59.117 43.478 0.00 0.00 38.94 2.18
3429 3672 3.892284 TCAAGGACAACCAAGCAACTAA 58.108 40.909 0.00 0.00 38.94 2.24
3430 3673 3.569194 TCAAGGACAACCAAGCAACTA 57.431 42.857 0.00 0.00 38.94 2.24
3431 3674 2.435372 TCAAGGACAACCAAGCAACT 57.565 45.000 0.00 0.00 38.94 3.16
3432 3675 3.733443 ATTCAAGGACAACCAAGCAAC 57.267 42.857 0.00 0.00 38.94 4.17
3433 3676 6.071616 GGTAATATTCAAGGACAACCAAGCAA 60.072 38.462 0.00 0.00 38.94 3.91
3434 3677 5.417580 GGTAATATTCAAGGACAACCAAGCA 59.582 40.000 0.00 0.00 38.94 3.91
3435 3678 5.652452 AGGTAATATTCAAGGACAACCAAGC 59.348 40.000 0.00 0.00 38.94 4.01
3436 3679 7.362920 CCAAGGTAATATTCAAGGACAACCAAG 60.363 40.741 0.00 0.00 38.94 3.61
3437 3680 6.435904 CCAAGGTAATATTCAAGGACAACCAA 59.564 38.462 0.00 0.00 38.94 3.67
3438 3681 5.949354 CCAAGGTAATATTCAAGGACAACCA 59.051 40.000 0.00 0.00 38.94 3.67
3439 3682 5.359860 CCCAAGGTAATATTCAAGGACAACC 59.640 44.000 0.00 0.00 0.00 3.77
3440 3683 5.949952 ACCCAAGGTAATATTCAAGGACAAC 59.050 40.000 0.00 0.00 32.11 3.32
3441 3684 6.147437 ACCCAAGGTAATATTCAAGGACAA 57.853 37.500 0.00 0.00 32.11 3.18
3442 3685 5.789574 ACCCAAGGTAATATTCAAGGACA 57.210 39.130 0.00 0.00 32.11 4.02
3443 3686 5.163550 GCAACCCAAGGTAATATTCAAGGAC 60.164 44.000 0.00 0.00 33.12 3.85
3444 3687 4.953579 GCAACCCAAGGTAATATTCAAGGA 59.046 41.667 0.00 0.00 33.12 3.36
3445 3688 4.099419 GGCAACCCAAGGTAATATTCAAGG 59.901 45.833 0.00 0.00 33.12 3.61
3446 3689 4.956075 AGGCAACCCAAGGTAATATTCAAG 59.044 41.667 0.00 0.00 33.12 3.02
3447 3690 4.941713 AGGCAACCCAAGGTAATATTCAA 58.058 39.130 0.00 0.00 33.12 2.69
3448 3691 4.601406 AGGCAACCCAAGGTAATATTCA 57.399 40.909 0.00 0.00 33.12 2.57
3449 3692 4.099419 CCAAGGCAACCCAAGGTAATATTC 59.901 45.833 0.00 0.00 33.12 1.75
3450 3693 4.030216 CCAAGGCAACCCAAGGTAATATT 58.970 43.478 0.00 0.00 33.12 1.28
3451 3694 3.012388 ACCAAGGCAACCCAAGGTAATAT 59.988 43.478 0.00 0.00 38.35 1.28
3452 3695 2.380590 ACCAAGGCAACCCAAGGTAATA 59.619 45.455 0.00 0.00 38.35 0.98
3453 3696 1.149077 ACCAAGGCAACCCAAGGTAAT 59.851 47.619 0.00 0.00 38.35 1.89
3454 3697 0.558712 ACCAAGGCAACCCAAGGTAA 59.441 50.000 0.00 0.00 38.35 2.85
3455 3698 0.111639 GACCAAGGCAACCCAAGGTA 59.888 55.000 0.00 0.00 39.67 3.08
3456 3699 1.152546 GACCAAGGCAACCCAAGGT 60.153 57.895 0.00 0.00 41.50 3.50
3457 3700 0.542702 ATGACCAAGGCAACCCAAGG 60.543 55.000 0.00 0.00 34.51 3.61
3458 3701 0.890683 GATGACCAAGGCAACCCAAG 59.109 55.000 0.00 0.00 37.17 3.61
3459 3702 0.541764 GGATGACCAAGGCAACCCAA 60.542 55.000 0.00 0.00 35.97 4.12
3460 3703 1.076549 GGATGACCAAGGCAACCCA 59.923 57.895 0.00 0.00 35.97 4.51
3461 3704 1.682344 GGGATGACCAAGGCAACCC 60.682 63.158 0.00 0.00 40.52 4.11
3462 3705 1.682344 GGGGATGACCAAGGCAACC 60.682 63.158 0.00 0.00 42.91 3.77
3463 3706 0.541764 TTGGGGATGACCAAGGCAAC 60.542 55.000 0.00 0.00 45.19 4.17
3464 3707 1.857049 TTGGGGATGACCAAGGCAA 59.143 52.632 0.00 0.00 45.19 4.52
3465 3708 3.599602 TTGGGGATGACCAAGGCA 58.400 55.556 0.00 0.00 45.19 4.75
3470 3713 0.918983 CCTAAGCTTGGGGATGACCA 59.081 55.000 20.71 0.00 42.91 4.02
3471 3714 0.466372 GCCTAAGCTTGGGGATGACC 60.466 60.000 28.06 8.42 35.50 4.02
3472 3715 3.102090 GCCTAAGCTTGGGGATGAC 57.898 57.895 28.06 9.13 35.50 3.06
3489 3732 3.347216 TGGAATAAAGAGTGGCAAGAGC 58.653 45.455 0.00 0.00 41.10 4.09
3490 3733 6.352516 ACTATGGAATAAAGAGTGGCAAGAG 58.647 40.000 0.00 0.00 0.00 2.85
3491 3734 6.313519 ACTATGGAATAAAGAGTGGCAAGA 57.686 37.500 0.00 0.00 0.00 3.02
3492 3735 5.529060 GGACTATGGAATAAAGAGTGGCAAG 59.471 44.000 0.00 0.00 0.00 4.01
3493 3736 5.045213 TGGACTATGGAATAAAGAGTGGCAA 60.045 40.000 0.00 0.00 0.00 4.52
3494 3737 4.473196 TGGACTATGGAATAAAGAGTGGCA 59.527 41.667 0.00 0.00 0.00 4.92
3495 3738 5.036117 TGGACTATGGAATAAAGAGTGGC 57.964 43.478 0.00 0.00 0.00 5.01
3496 3739 5.928839 CGATGGACTATGGAATAAAGAGTGG 59.071 44.000 0.00 0.00 0.00 4.00
3497 3740 6.749139 TCGATGGACTATGGAATAAAGAGTG 58.251 40.000 0.00 0.00 0.00 3.51
3498 3741 6.978674 TCGATGGACTATGGAATAAAGAGT 57.021 37.500 0.00 0.00 0.00 3.24
3499 3742 8.310382 AGATTCGATGGACTATGGAATAAAGAG 58.690 37.037 8.66 0.00 42.18 2.85
3500 3743 8.195165 AGATTCGATGGACTATGGAATAAAGA 57.805 34.615 8.66 0.00 42.18 2.52
3501 3744 8.839310 AAGATTCGATGGACTATGGAATAAAG 57.161 34.615 8.66 0.00 42.18 1.85
3503 3746 9.706691 GTAAAGATTCGATGGACTATGGAATAA 57.293 33.333 8.66 0.00 42.18 1.40
3504 3747 8.311836 GGTAAAGATTCGATGGACTATGGAATA 58.688 37.037 8.66 0.00 42.18 1.75
3505 3748 7.162082 GGTAAAGATTCGATGGACTATGGAAT 58.838 38.462 8.46 8.46 44.00 3.01
3506 3749 6.463897 GGGTAAAGATTCGATGGACTATGGAA 60.464 42.308 0.00 0.00 37.80 3.53
3507 3750 5.011738 GGGTAAAGATTCGATGGACTATGGA 59.988 44.000 0.00 0.00 0.00 3.41
3508 3751 5.221641 TGGGTAAAGATTCGATGGACTATGG 60.222 44.000 0.00 0.00 0.00 2.74
3509 3752 5.853936 TGGGTAAAGATTCGATGGACTATG 58.146 41.667 0.00 0.00 0.00 2.23
3510 3753 6.494666 TTGGGTAAAGATTCGATGGACTAT 57.505 37.500 0.00 0.00 0.00 2.12
3511 3754 5.943349 TTGGGTAAAGATTCGATGGACTA 57.057 39.130 0.00 0.00 0.00 2.59
3512 3755 4.837093 TTGGGTAAAGATTCGATGGACT 57.163 40.909 0.00 0.00 0.00 3.85
3513 3756 5.414765 AGTTTTGGGTAAAGATTCGATGGAC 59.585 40.000 0.00 0.00 0.00 4.02
3514 3757 5.566469 AGTTTTGGGTAAAGATTCGATGGA 58.434 37.500 0.00 0.00 0.00 3.41
3515 3758 5.897377 AGTTTTGGGTAAAGATTCGATGG 57.103 39.130 0.00 0.00 0.00 3.51
3516 3759 9.685828 TTTTAAGTTTTGGGTAAAGATTCGATG 57.314 29.630 0.00 0.00 0.00 3.84
3518 3761 9.518906 GTTTTTAAGTTTTGGGTAAAGATTCGA 57.481 29.630 0.00 0.00 0.00 3.71
3519 3762 9.524106 AGTTTTTAAGTTTTGGGTAAAGATTCG 57.476 29.630 0.00 0.00 0.00 3.34
3523 3766 9.642327 GTGAAGTTTTTAAGTTTTGGGTAAAGA 57.358 29.630 0.00 0.00 0.00 2.52
3524 3767 9.425577 TGTGAAGTTTTTAAGTTTTGGGTAAAG 57.574 29.630 0.00 0.00 0.00 1.85
3525 3768 9.774413 TTGTGAAGTTTTTAAGTTTTGGGTAAA 57.226 25.926 0.00 0.00 0.00 2.01
3526 3769 9.205719 GTTGTGAAGTTTTTAAGTTTTGGGTAA 57.794 29.630 0.00 0.00 0.00 2.85
3527 3770 8.365647 TGTTGTGAAGTTTTTAAGTTTTGGGTA 58.634 29.630 0.00 0.00 0.00 3.69
3528 3771 7.171848 GTGTTGTGAAGTTTTTAAGTTTTGGGT 59.828 33.333 0.00 0.00 0.00 4.51
3529 3772 7.171678 TGTGTTGTGAAGTTTTTAAGTTTTGGG 59.828 33.333 0.00 0.00 0.00 4.12
3530 3773 8.077836 TGTGTTGTGAAGTTTTTAAGTTTTGG 57.922 30.769 0.00 0.00 0.00 3.28
3531 3774 9.922305 TTTGTGTTGTGAAGTTTTTAAGTTTTG 57.078 25.926 0.00 0.00 0.00 2.44
3533 3776 9.923786 GTTTTGTGTTGTGAAGTTTTTAAGTTT 57.076 25.926 0.00 0.00 0.00 2.66
3534 3777 9.320352 AGTTTTGTGTTGTGAAGTTTTTAAGTT 57.680 25.926 0.00 0.00 0.00 2.66
3535 3778 8.880878 AGTTTTGTGTTGTGAAGTTTTTAAGT 57.119 26.923 0.00 0.00 0.00 2.24
3536 3779 8.973378 TGAGTTTTGTGTTGTGAAGTTTTTAAG 58.027 29.630 0.00 0.00 0.00 1.85
3537 3780 8.873215 TGAGTTTTGTGTTGTGAAGTTTTTAA 57.127 26.923 0.00 0.00 0.00 1.52
3538 3781 8.756864 GTTGAGTTTTGTGTTGTGAAGTTTTTA 58.243 29.630 0.00 0.00 0.00 1.52
3539 3782 7.278868 TGTTGAGTTTTGTGTTGTGAAGTTTTT 59.721 29.630 0.00 0.00 0.00 1.94
3540 3783 6.758886 TGTTGAGTTTTGTGTTGTGAAGTTTT 59.241 30.769 0.00 0.00 0.00 2.43
3541 3784 6.276847 TGTTGAGTTTTGTGTTGTGAAGTTT 58.723 32.000 0.00 0.00 0.00 2.66
3542 3785 5.837437 TGTTGAGTTTTGTGTTGTGAAGTT 58.163 33.333 0.00 0.00 0.00 2.66
3543 3786 5.240623 TCTGTTGAGTTTTGTGTTGTGAAGT 59.759 36.000 0.00 0.00 0.00 3.01
3544 3787 5.698832 TCTGTTGAGTTTTGTGTTGTGAAG 58.301 37.500 0.00 0.00 0.00 3.02
3545 3788 5.697473 TCTGTTGAGTTTTGTGTTGTGAA 57.303 34.783 0.00 0.00 0.00 3.18
3546 3789 5.697473 TTCTGTTGAGTTTTGTGTTGTGA 57.303 34.783 0.00 0.00 0.00 3.58
3547 3790 6.761731 TTTTCTGTTGAGTTTTGTGTTGTG 57.238 33.333 0.00 0.00 0.00 3.33
3548 3791 7.378181 AGATTTTCTGTTGAGTTTTGTGTTGT 58.622 30.769 0.00 0.00 0.00 3.32
3549 3792 7.816945 AGATTTTCTGTTGAGTTTTGTGTTG 57.183 32.000 0.00 0.00 0.00 3.33
3551 3794 9.520204 CATAAGATTTTCTGTTGAGTTTTGTGT 57.480 29.630 0.00 0.00 0.00 3.72
3552 3795 9.734620 TCATAAGATTTTCTGTTGAGTTTTGTG 57.265 29.630 0.00 0.00 0.00 3.33
3553 3796 9.956720 CTCATAAGATTTTCTGTTGAGTTTTGT 57.043 29.630 8.01 0.00 34.35 2.83
3554 3797 9.403110 CCTCATAAGATTTTCTGTTGAGTTTTG 57.597 33.333 12.35 0.00 35.89 2.44
3555 3798 9.136323 ACCTCATAAGATTTTCTGTTGAGTTTT 57.864 29.630 12.35 0.55 35.89 2.43
3556 3799 8.697507 ACCTCATAAGATTTTCTGTTGAGTTT 57.302 30.769 12.35 2.15 35.89 2.66
3557 3800 7.391833 GGACCTCATAAGATTTTCTGTTGAGTT 59.608 37.037 12.35 3.15 35.89 3.01
3558 3801 6.881602 GGACCTCATAAGATTTTCTGTTGAGT 59.118 38.462 12.35 5.06 35.89 3.41
3559 3802 6.036517 CGGACCTCATAAGATTTTCTGTTGAG 59.963 42.308 8.77 8.77 36.68 3.02
3560 3803 5.874810 CGGACCTCATAAGATTTTCTGTTGA 59.125 40.000 0.00 0.00 0.00 3.18
3561 3804 5.643777 ACGGACCTCATAAGATTTTCTGTTG 59.356 40.000 0.00 0.00 0.00 3.33
3562 3805 5.805728 ACGGACCTCATAAGATTTTCTGTT 58.194 37.500 0.00 0.00 0.00 3.16
3563 3806 5.422214 ACGGACCTCATAAGATTTTCTGT 57.578 39.130 0.00 0.00 0.00 3.41
3564 3807 7.042335 ACTAACGGACCTCATAAGATTTTCTG 58.958 38.462 0.00 0.00 0.00 3.02
3565 3808 7.184067 ACTAACGGACCTCATAAGATTTTCT 57.816 36.000 0.00 0.00 0.00 2.52
3569 3812 9.584008 TCTTATACTAACGGACCTCATAAGATT 57.416 33.333 0.00 0.00 31.79 2.40
3570 3813 9.584008 TTCTTATACTAACGGACCTCATAAGAT 57.416 33.333 0.00 0.00 34.94 2.40
3571 3814 8.985315 TTCTTATACTAACGGACCTCATAAGA 57.015 34.615 0.00 0.00 33.78 2.10
3606 3849 6.931838 TGAGTTCACAATAGTACCTAAGTGG 58.068 40.000 6.36 0.00 42.93 4.00
3644 3887 9.826574 GTTGGAATACAGTAGATATAACACCAA 57.173 33.333 0.00 0.00 0.00 3.67
3645 3888 9.209048 AGTTGGAATACAGTAGATATAACACCA 57.791 33.333 0.00 0.00 0.00 4.17
3651 3894 9.877222 TGGAGAAGTTGGAATACAGTAGATATA 57.123 33.333 0.00 0.00 0.00 0.86
3652 3895 8.783660 TGGAGAAGTTGGAATACAGTAGATAT 57.216 34.615 0.00 0.00 0.00 1.63
3653 3896 8.642432 CATGGAGAAGTTGGAATACAGTAGATA 58.358 37.037 0.00 0.00 0.00 1.98
3654 3897 7.419518 CCATGGAGAAGTTGGAATACAGTAGAT 60.420 40.741 5.56 0.00 31.94 1.98
3655 3898 6.127054 CCATGGAGAAGTTGGAATACAGTAGA 60.127 42.308 5.56 0.00 31.94 2.59
3656 3899 6.051717 CCATGGAGAAGTTGGAATACAGTAG 58.948 44.000 5.56 0.00 31.94 2.57
3657 3900 5.487488 ACCATGGAGAAGTTGGAATACAGTA 59.513 40.000 21.47 0.00 34.52 2.74
3658 3901 4.289672 ACCATGGAGAAGTTGGAATACAGT 59.710 41.667 21.47 0.00 34.52 3.55
3659 3902 4.848357 ACCATGGAGAAGTTGGAATACAG 58.152 43.478 21.47 0.00 34.52 2.74
3660 3903 4.927267 ACCATGGAGAAGTTGGAATACA 57.073 40.909 21.47 0.00 34.52 2.29
3661 3904 5.253330 TGAACCATGGAGAAGTTGGAATAC 58.747 41.667 21.47 0.00 34.52 1.89
3662 3905 5.512942 TGAACCATGGAGAAGTTGGAATA 57.487 39.130 21.47 0.00 34.52 1.75
3663 3906 4.387026 TGAACCATGGAGAAGTTGGAAT 57.613 40.909 21.47 0.00 34.52 3.01
3664 3907 3.874383 TGAACCATGGAGAAGTTGGAA 57.126 42.857 21.47 0.00 34.52 3.53
3665 3908 4.324254 GGTATGAACCATGGAGAAGTTGGA 60.324 45.833 21.47 0.00 45.98 3.53
3666 3909 3.947834 GGTATGAACCATGGAGAAGTTGG 59.052 47.826 21.47 0.00 45.98 3.77
3679 3922 7.526142 TGAGTAGTATCTGATGGTATGAACC 57.474 40.000 0.00 0.00 46.98 3.62
3686 3929 9.766754 ATGAATCTATGAGTAGTATCTGATGGT 57.233 33.333 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.