Multiple sequence alignment - TraesCS7B01G050200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G050200 chr7B 100.000 3013 0 0 1 3013 51265297 51268309 0.000000e+00 5565.0
1 TraesCS7B01G050200 chr7B 97.040 473 13 1 2541 3013 198374323 198373852 0.000000e+00 795.0
2 TraesCS7B01G050200 chr4B 97.886 1561 31 2 980 2540 2711645 2710087 0.000000e+00 2699.0
3 TraesCS7B01G050200 chr4B 92.925 1583 101 9 980 2560 97792175 97790602 0.000000e+00 2292.0
4 TraesCS7B01G050200 chr4B 93.812 1002 19 10 1 980 535057117 535058097 0.000000e+00 1467.0
5 TraesCS7B01G050200 chr4B 92.223 1003 52 14 1 980 97794559 97793560 0.000000e+00 1397.0
6 TraesCS7B01G050200 chr4B 91.118 1002 34 18 1 980 97891906 97890938 0.000000e+00 1306.0
7 TraesCS7B01G050200 chr4B 97.040 473 13 1 2541 3013 178044766 178045237 0.000000e+00 795.0
8 TraesCS7B01G050200 chr4B 97.996 449 8 1 532 980 2733278 2732831 0.000000e+00 778.0
9 TraesCS7B01G050200 chr4B 96.796 437 14 0 1 437 2735543 2735107 0.000000e+00 730.0
10 TraesCS7B01G050200 chr4B 98.077 52 0 1 442 492 2735127 2735076 4.140000e-14 89.8
11 TraesCS7B01G050200 chrUn 97.117 1561 45 0 980 2540 122647194 122648754 0.000000e+00 2634.0
12 TraesCS7B01G050200 chr7A 96.989 1561 47 0 980 2540 606193657 606195217 0.000000e+00 2623.0
13 TraesCS7B01G050200 chr5B 95.141 1564 49 3 980 2542 474614614 474613077 0.000000e+00 2442.0
14 TraesCS7B01G050200 chr5B 94.818 1563 54 3 980 2540 345811410 345812947 0.000000e+00 2412.0
15 TraesCS7B01G050200 chr5B 97.252 473 12 1 2541 3013 456781017 456781488 0.000000e+00 800.0
16 TraesCS7B01G050200 chr3D 94.636 1566 82 2 980 2544 384009047 384010611 0.000000e+00 2425.0
17 TraesCS7B01G050200 chr3D 91.027 1003 37 11 1 980 384006805 384007777 0.000000e+00 1304.0
18 TraesCS7B01G050200 chr6B 94.695 1508 72 7 1039 2540 690878403 690876898 0.000000e+00 2335.0
19 TraesCS7B01G050200 chr6B 97.252 473 12 1 2541 3013 57919224 57918753 0.000000e+00 800.0
20 TraesCS7B01G050200 chr6B 97.046 474 12 2 2541 3013 580231271 580231743 0.000000e+00 797.0
21 TraesCS7B01G050200 chr1A 94.367 1154 58 4 1395 2543 2283622 2282471 0.000000e+00 1764.0
22 TraesCS7B01G050200 chr1A 91.127 1003 44 10 1 980 2285252 2284272 0.000000e+00 1317.0
23 TraesCS7B01G050200 chr1B 94.605 1001 26 4 1 980 66933716 66932723 0.000000e+00 1524.0
24 TraesCS7B01G050200 chr1B 92.113 710 8 5 294 980 135939744 135939060 0.000000e+00 957.0
25 TraesCS7B01G050200 chr1B 97.040 473 13 1 2541 3013 330246718 330247189 0.000000e+00 795.0
26 TraesCS7B01G050200 chr1B 97.040 473 13 1 2541 3013 468861838 468861367 0.000000e+00 795.0
27 TraesCS7B01G050200 chr1B 94.505 273 7 2 1 265 135940003 135939731 6.010000e-112 414.0
28 TraesCS7B01G050200 chr2A 87.538 979 63 22 19 980 779738407 779739343 0.000000e+00 1077.0
29 TraesCS7B01G050200 chr2A 90.020 511 35 8 1 511 173515585 173515091 0.000000e+00 647.0
30 TraesCS7B01G050200 chr3B 97.252 473 12 1 2541 3013 8274667 8274196 0.000000e+00 800.0
31 TraesCS7B01G050200 chr3B 87.931 290 15 5 980 1269 7191348 7191079 1.040000e-84 324.0
32 TraesCS7B01G050200 chr2B 97.040 473 13 1 2541 3013 48827457 48827928 0.000000e+00 795.0
33 TraesCS7B01G050200 chr2B 95.067 446 20 2 537 980 491292363 491292808 0.000000e+00 701.0
34 TraesCS7B01G050200 chr6A 93.827 162 10 0 298 459 511510707 511510868 8.340000e-61 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G050200 chr7B 51265297 51268309 3012 False 5565.0 5565 100.0000 1 3013 1 chr7B.!!$F1 3012
1 TraesCS7B01G050200 chr4B 2710087 2711645 1558 True 2699.0 2699 97.8860 980 2540 1 chr4B.!!$R1 1560
2 TraesCS7B01G050200 chr4B 97790602 97794559 3957 True 1844.5 2292 92.5740 1 2560 2 chr4B.!!$R4 2559
3 TraesCS7B01G050200 chr4B 535057117 535058097 980 False 1467.0 1467 93.8120 1 980 1 chr4B.!!$F2 979
4 TraesCS7B01G050200 chr4B 97890938 97891906 968 True 1306.0 1306 91.1180 1 980 1 chr4B.!!$R2 979
5 TraesCS7B01G050200 chr4B 2732831 2735543 2712 True 532.6 778 97.6230 1 980 3 chr4B.!!$R3 979
6 TraesCS7B01G050200 chrUn 122647194 122648754 1560 False 2634.0 2634 97.1170 980 2540 1 chrUn.!!$F1 1560
7 TraesCS7B01G050200 chr7A 606193657 606195217 1560 False 2623.0 2623 96.9890 980 2540 1 chr7A.!!$F1 1560
8 TraesCS7B01G050200 chr5B 474613077 474614614 1537 True 2442.0 2442 95.1410 980 2542 1 chr5B.!!$R1 1562
9 TraesCS7B01G050200 chr5B 345811410 345812947 1537 False 2412.0 2412 94.8180 980 2540 1 chr5B.!!$F1 1560
10 TraesCS7B01G050200 chr3D 384006805 384010611 3806 False 1864.5 2425 92.8315 1 2544 2 chr3D.!!$F1 2543
11 TraesCS7B01G050200 chr6B 690876898 690878403 1505 True 2335.0 2335 94.6950 1039 2540 1 chr6B.!!$R2 1501
12 TraesCS7B01G050200 chr1A 2282471 2285252 2781 True 1540.5 1764 92.7470 1 2543 2 chr1A.!!$R1 2542
13 TraesCS7B01G050200 chr1B 66932723 66933716 993 True 1524.0 1524 94.6050 1 980 1 chr1B.!!$R1 979
14 TraesCS7B01G050200 chr1B 135939060 135940003 943 True 685.5 957 93.3090 1 980 2 chr1B.!!$R3 979
15 TraesCS7B01G050200 chr2A 779738407 779739343 936 False 1077.0 1077 87.5380 19 980 1 chr2A.!!$F1 961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 119 0.251253 ACGACCTCTCTCCCGAACTT 60.251 55.0 0.0 0.0 0.0 2.66 F
1632 6518 1.486145 GGAGGGGGAAGGAACAACGA 61.486 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 6725 3.149196 CCATGACAGCCTTGTACAAGTT 58.851 45.455 29.05 16.96 37.76 2.66 R
2651 7544 0.032403 TGTGCATCCAACTTGCTTGC 59.968 50.000 0.00 7.05 40.77 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 119 0.251253 ACGACCTCTCTCCCGAACTT 60.251 55.000 0.00 0.00 0.00 2.66
191 202 2.125552 CTCGCGAACTCCATGGCA 60.126 61.111 11.33 0.00 0.00 4.92
235 246 1.754234 CGGCCCCCTTTGATCTTGG 60.754 63.158 0.00 0.00 0.00 3.61
801 2608 2.516225 GGATAACCGTGGGCAGCC 60.516 66.667 1.26 1.26 0.00 4.85
1143 5608 9.193133 CGTATATCTTCTTTCGTTGGTTATGAT 57.807 33.333 0.00 0.00 0.00 2.45
1418 6304 7.926674 TTTCATAGCTGAAATGATGTCTCAA 57.073 32.000 0.00 0.00 44.46 3.02
1576 6462 1.819632 GTGTGCCCCTAGGAATGCG 60.820 63.158 11.48 0.00 33.47 4.73
1596 6482 3.250040 GCGTATTGTTGTGGAAGACAAGT 59.750 43.478 0.00 0.00 45.46 3.16
1632 6518 1.486145 GGAGGGGGAAGGAACAACGA 61.486 60.000 0.00 0.00 0.00 3.85
1656 6542 5.692115 TGAGGTATTGCAACATCTTCCTA 57.308 39.130 0.00 0.00 31.59 2.94
1839 6725 1.886222 GCCATGCTGAAACACACCCTA 60.886 52.381 0.00 0.00 0.00 3.53
2047 6933 1.002430 GTGCTTGATGAGACTGTCCCA 59.998 52.381 3.76 0.00 0.00 4.37
2121 7007 2.455674 AGTGATGCACTGCTACGAAA 57.544 45.000 1.98 0.00 43.63 3.46
2453 7346 7.938140 ACATACATTGCTACCAAACAACTAT 57.062 32.000 0.00 0.00 34.05 2.12
2519 7412 2.504175 GGAACAACTATGCTAGGGTGGA 59.496 50.000 0.00 0.00 0.00 4.02
2544 7437 2.910319 AGCTACCAAACACACCCATAGA 59.090 45.455 0.00 0.00 0.00 1.98
2546 7439 4.018415 AGCTACCAAACACACCCATAGATT 60.018 41.667 0.00 0.00 0.00 2.40
2547 7440 4.096382 GCTACCAAACACACCCATAGATTG 59.904 45.833 0.00 0.00 0.00 2.67
2549 7442 4.079253 ACCAAACACACCCATAGATTGTC 58.921 43.478 0.00 0.00 0.00 3.18
2550 7443 4.202567 ACCAAACACACCCATAGATTGTCT 60.203 41.667 0.00 0.00 0.00 3.41
2552 7445 3.914426 ACACACCCATAGATTGTCTCC 57.086 47.619 0.00 0.00 0.00 3.71
2554 7447 4.620723 ACACACCCATAGATTGTCTCCTA 58.379 43.478 0.00 0.00 0.00 2.94
2556 7449 5.070981 ACACACCCATAGATTGTCTCCTATG 59.929 44.000 0.00 0.00 40.97 2.23
2557 7450 5.070981 CACACCCATAGATTGTCTCCTATGT 59.929 44.000 0.00 0.00 40.15 2.29
2558 7451 5.667626 ACACCCATAGATTGTCTCCTATGTT 59.332 40.000 0.00 0.00 40.15 2.71
2559 7452 5.994054 CACCCATAGATTGTCTCCTATGTTG 59.006 44.000 0.00 0.00 40.15 3.33
2560 7453 5.667626 ACCCATAGATTGTCTCCTATGTTGT 59.332 40.000 0.00 0.00 40.15 3.32
2561 7454 6.183361 ACCCATAGATTGTCTCCTATGTTGTC 60.183 42.308 0.00 0.00 40.15 3.18
2562 7455 6.183361 CCCATAGATTGTCTCCTATGTTGTCA 60.183 42.308 0.00 0.00 40.15 3.58
2563 7456 6.703607 CCATAGATTGTCTCCTATGTTGTCAC 59.296 42.308 0.00 0.00 40.15 3.67
2564 7457 7.418368 CCATAGATTGTCTCCTATGTTGTCACT 60.418 40.741 0.00 0.00 40.15 3.41
2565 7458 6.365970 AGATTGTCTCCTATGTTGTCACTT 57.634 37.500 0.00 0.00 0.00 3.16
2566 7459 6.773638 AGATTGTCTCCTATGTTGTCACTTT 58.226 36.000 0.00 0.00 0.00 2.66
2567 7460 6.876257 AGATTGTCTCCTATGTTGTCACTTTC 59.124 38.462 0.00 0.00 0.00 2.62
2568 7461 5.545063 TGTCTCCTATGTTGTCACTTTCA 57.455 39.130 0.00 0.00 0.00 2.69
2569 7462 6.114187 TGTCTCCTATGTTGTCACTTTCAT 57.886 37.500 0.00 0.00 0.00 2.57
2570 7463 7.239763 TGTCTCCTATGTTGTCACTTTCATA 57.760 36.000 0.00 0.00 0.00 2.15
2571 7464 7.851228 TGTCTCCTATGTTGTCACTTTCATAT 58.149 34.615 0.00 0.00 0.00 1.78
2572 7465 8.977412 TGTCTCCTATGTTGTCACTTTCATATA 58.023 33.333 0.00 0.00 0.00 0.86
2573 7466 9.250624 GTCTCCTATGTTGTCACTTTCATATAC 57.749 37.037 0.00 0.00 0.00 1.47
2574 7467 9.201989 TCTCCTATGTTGTCACTTTCATATACT 57.798 33.333 0.00 0.00 0.00 2.12
2579 7472 8.948631 ATGTTGTCACTTTCATATACTAGTGG 57.051 34.615 5.39 0.00 38.75 4.00
2580 7473 7.327975 TGTTGTCACTTTCATATACTAGTGGG 58.672 38.462 5.39 0.00 38.75 4.61
2581 7474 7.179516 TGTTGTCACTTTCATATACTAGTGGGA 59.820 37.037 5.39 0.00 38.75 4.37
2582 7475 7.727578 TGTCACTTTCATATACTAGTGGGAA 57.272 36.000 5.39 1.17 38.75 3.97
2583 7476 8.319057 TGTCACTTTCATATACTAGTGGGAAT 57.681 34.615 5.39 0.00 38.75 3.01
2584 7477 8.768397 TGTCACTTTCATATACTAGTGGGAATT 58.232 33.333 5.39 0.00 38.75 2.17
2585 7478 9.614792 GTCACTTTCATATACTAGTGGGAATTT 57.385 33.333 5.39 0.00 38.75 1.82
2601 7494 8.971073 AGTGGGAATTTTCATTATAGAACTTGG 58.029 33.333 0.00 0.00 0.00 3.61
2602 7495 7.706607 GTGGGAATTTTCATTATAGAACTTGGC 59.293 37.037 0.00 0.00 0.00 4.52
2603 7496 7.619302 TGGGAATTTTCATTATAGAACTTGGCT 59.381 33.333 0.00 0.00 0.00 4.75
2604 7497 8.478066 GGGAATTTTCATTATAGAACTTGGCTT 58.522 33.333 0.00 0.00 0.00 4.35
2605 7498 9.305925 GGAATTTTCATTATAGAACTTGGCTTG 57.694 33.333 0.00 0.00 0.00 4.01
2606 7499 9.860898 GAATTTTCATTATAGAACTTGGCTTGT 57.139 29.630 0.00 0.00 0.00 3.16
2616 7509 6.759497 AGAACTTGGCTTGTATATTCCAAC 57.241 37.500 0.00 0.00 35.07 3.77
2617 7510 5.354234 AGAACTTGGCTTGTATATTCCAACG 59.646 40.000 0.00 0.00 35.07 4.10
2618 7511 4.839121 ACTTGGCTTGTATATTCCAACGA 58.161 39.130 0.00 0.00 35.07 3.85
2619 7512 5.437060 ACTTGGCTTGTATATTCCAACGAT 58.563 37.500 0.00 0.00 35.07 3.73
2620 7513 5.296780 ACTTGGCTTGTATATTCCAACGATG 59.703 40.000 0.00 0.00 35.07 3.84
2629 7522 4.225497 CCAACGATGGGCTTCCTC 57.775 61.111 3.28 0.00 43.51 3.71
2630 7523 1.299648 CCAACGATGGGCTTCCTCA 59.700 57.895 3.28 0.00 43.51 3.86
2631 7524 0.322456 CCAACGATGGGCTTCCTCAA 60.322 55.000 3.28 0.00 43.51 3.02
2632 7525 1.533625 CAACGATGGGCTTCCTCAAA 58.466 50.000 0.00 0.00 0.00 2.69
2633 7526 2.094675 CAACGATGGGCTTCCTCAAAT 58.905 47.619 0.00 0.00 0.00 2.32
2634 7527 1.755179 ACGATGGGCTTCCTCAAATG 58.245 50.000 0.00 0.00 0.00 2.32
2635 7528 0.383231 CGATGGGCTTCCTCAAATGC 59.617 55.000 0.00 0.00 0.00 3.56
2636 7529 0.749049 GATGGGCTTCCTCAAATGCC 59.251 55.000 0.00 0.00 44.22 4.40
2638 7531 4.772678 GGCTTCCTCAAATGCCCT 57.227 55.556 0.00 0.00 39.49 5.19
2639 7532 3.903208 GGCTTCCTCAAATGCCCTA 57.097 52.632 0.00 0.00 39.49 3.53
2640 7533 1.685148 GGCTTCCTCAAATGCCCTAG 58.315 55.000 0.00 0.00 39.49 3.02
2641 7534 1.028130 GCTTCCTCAAATGCCCTAGC 58.972 55.000 0.00 0.00 40.48 3.42
2642 7535 1.409381 GCTTCCTCAAATGCCCTAGCT 60.409 52.381 0.00 0.00 40.80 3.32
2643 7536 2.570135 CTTCCTCAAATGCCCTAGCTC 58.430 52.381 0.00 0.00 40.80 4.09
2644 7537 1.885049 TCCTCAAATGCCCTAGCTCT 58.115 50.000 0.00 0.00 40.80 4.09
2645 7538 2.200081 TCCTCAAATGCCCTAGCTCTT 58.800 47.619 0.00 0.00 40.80 2.85
2646 7539 2.171448 TCCTCAAATGCCCTAGCTCTTC 59.829 50.000 0.00 0.00 40.80 2.87
2647 7540 2.092753 CCTCAAATGCCCTAGCTCTTCA 60.093 50.000 0.00 0.00 40.80 3.02
2648 7541 3.434739 CCTCAAATGCCCTAGCTCTTCAT 60.435 47.826 0.00 0.00 40.80 2.57
2649 7542 3.548770 TCAAATGCCCTAGCTCTTCATG 58.451 45.455 0.00 0.00 40.80 3.07
2650 7543 3.200605 TCAAATGCCCTAGCTCTTCATGA 59.799 43.478 0.00 0.00 40.80 3.07
2651 7544 3.488778 AATGCCCTAGCTCTTCATGAG 57.511 47.619 0.00 0.00 45.33 2.90
2662 7555 3.822996 CTCTTCATGAGCAAGCAAGTTG 58.177 45.455 0.00 0.00 39.41 3.16
2663 7556 2.555325 TCTTCATGAGCAAGCAAGTTGG 59.445 45.455 4.75 0.00 36.56 3.77
2664 7557 2.275134 TCATGAGCAAGCAAGTTGGA 57.725 45.000 4.75 0.00 36.56 3.53
2665 7558 2.799017 TCATGAGCAAGCAAGTTGGAT 58.201 42.857 4.75 0.00 36.56 3.41
2666 7559 2.490509 TCATGAGCAAGCAAGTTGGATG 59.509 45.455 4.75 0.00 36.56 3.51
2667 7560 0.599558 TGAGCAAGCAAGTTGGATGC 59.400 50.000 4.75 0.00 44.15 3.91
2668 7561 0.599558 GAGCAAGCAAGTTGGATGCA 59.400 50.000 4.75 0.00 46.22 3.96
2669 7562 0.316204 AGCAAGCAAGTTGGATGCAC 59.684 50.000 4.75 0.00 46.22 4.57
2670 7563 0.032403 GCAAGCAAGTTGGATGCACA 59.968 50.000 4.75 0.00 46.22 4.57
2671 7564 1.774639 CAAGCAAGTTGGATGCACAC 58.225 50.000 4.75 0.00 46.22 3.82
2672 7565 0.675633 AAGCAAGTTGGATGCACACC 59.324 50.000 4.75 4.98 46.22 4.16
2673 7566 1.181098 AGCAAGTTGGATGCACACCC 61.181 55.000 4.75 2.41 46.22 4.61
2674 7567 1.462731 GCAAGTTGGATGCACACCCA 61.463 55.000 4.75 4.95 43.29 4.51
2675 7568 0.314935 CAAGTTGGATGCACACCCAC 59.685 55.000 8.94 8.22 31.11 4.61
2676 7569 0.185901 AAGTTGGATGCACACCCACT 59.814 50.000 11.14 11.14 35.39 4.00
2677 7570 0.185901 AGTTGGATGCACACCCACTT 59.814 50.000 11.14 0.00 30.80 3.16
2678 7571 1.423541 AGTTGGATGCACACCCACTTA 59.576 47.619 11.14 0.00 30.80 2.24
2679 7572 1.812571 GTTGGATGCACACCCACTTAG 59.187 52.381 8.94 0.00 31.11 2.18
2680 7573 1.064003 TGGATGCACACCCACTTAGT 58.936 50.000 8.94 0.00 0.00 2.24
2681 7574 1.423541 TGGATGCACACCCACTTAGTT 59.576 47.619 8.94 0.00 0.00 2.24
2682 7575 2.158534 TGGATGCACACCCACTTAGTTT 60.159 45.455 8.94 0.00 0.00 2.66
2683 7576 2.488153 GGATGCACACCCACTTAGTTTC 59.512 50.000 0.00 0.00 0.00 2.78
2684 7577 3.412386 GATGCACACCCACTTAGTTTCT 58.588 45.455 0.00 0.00 0.00 2.52
2685 7578 3.290948 TGCACACCCACTTAGTTTCTT 57.709 42.857 0.00 0.00 0.00 2.52
2686 7579 3.626930 TGCACACCCACTTAGTTTCTTT 58.373 40.909 0.00 0.00 0.00 2.52
2687 7580 4.020543 TGCACACCCACTTAGTTTCTTTT 58.979 39.130 0.00 0.00 0.00 2.27
2688 7581 4.142271 TGCACACCCACTTAGTTTCTTTTG 60.142 41.667 0.00 0.00 0.00 2.44
2689 7582 4.142249 GCACACCCACTTAGTTTCTTTTGT 60.142 41.667 0.00 0.00 0.00 2.83
2690 7583 5.623596 GCACACCCACTTAGTTTCTTTTGTT 60.624 40.000 0.00 0.00 0.00 2.83
2691 7584 5.804979 CACACCCACTTAGTTTCTTTTGTTG 59.195 40.000 0.00 0.00 0.00 3.33
2692 7585 5.712917 ACACCCACTTAGTTTCTTTTGTTGA 59.287 36.000 0.00 0.00 0.00 3.18
2693 7586 6.127730 ACACCCACTTAGTTTCTTTTGTTGAG 60.128 38.462 0.00 0.00 0.00 3.02
2694 7587 5.163550 ACCCACTTAGTTTCTTTTGTTGAGC 60.164 40.000 0.00 0.00 0.00 4.26
2695 7588 5.281727 CCACTTAGTTTCTTTTGTTGAGCC 58.718 41.667 0.00 0.00 0.00 4.70
2696 7589 5.067805 CCACTTAGTTTCTTTTGTTGAGCCT 59.932 40.000 0.00 0.00 0.00 4.58
2697 7590 6.405842 CCACTTAGTTTCTTTTGTTGAGCCTT 60.406 38.462 0.00 0.00 0.00 4.35
2698 7591 6.693113 CACTTAGTTTCTTTTGTTGAGCCTTC 59.307 38.462 0.00 0.00 0.00 3.46
2699 7592 6.377146 ACTTAGTTTCTTTTGTTGAGCCTTCA 59.623 34.615 0.00 0.00 0.00 3.02
2700 7593 5.859205 AGTTTCTTTTGTTGAGCCTTCAT 57.141 34.783 0.00 0.00 32.27 2.57
2701 7594 6.959639 AGTTTCTTTTGTTGAGCCTTCATA 57.040 33.333 0.00 0.00 32.27 2.15
2702 7595 6.739112 AGTTTCTTTTGTTGAGCCTTCATAC 58.261 36.000 0.00 0.00 32.27 2.39
2703 7596 6.321181 AGTTTCTTTTGTTGAGCCTTCATACA 59.679 34.615 0.00 0.00 32.27 2.29
2704 7597 6.899393 TTCTTTTGTTGAGCCTTCATACAT 57.101 33.333 0.00 0.00 32.27 2.29
2705 7598 6.899393 TCTTTTGTTGAGCCTTCATACATT 57.101 33.333 0.00 0.00 32.27 2.71
2706 7599 7.288810 TCTTTTGTTGAGCCTTCATACATTT 57.711 32.000 0.00 0.00 32.27 2.32
2707 7600 8.402798 TCTTTTGTTGAGCCTTCATACATTTA 57.597 30.769 0.00 0.00 32.27 1.40
2708 7601 9.023962 TCTTTTGTTGAGCCTTCATACATTTAT 57.976 29.630 0.00 0.00 32.27 1.40
2711 7604 7.496529 TGTTGAGCCTTCATACATTTATAGC 57.503 36.000 0.00 0.00 32.27 2.97
2712 7605 7.282585 TGTTGAGCCTTCATACATTTATAGCT 58.717 34.615 0.00 0.00 32.27 3.32
2713 7606 7.442364 TGTTGAGCCTTCATACATTTATAGCTC 59.558 37.037 0.00 0.00 43.43 4.09
2714 7607 7.308450 TGAGCCTTCATACATTTATAGCTCT 57.692 36.000 9.31 0.00 43.51 4.09
2715 7608 7.739825 TGAGCCTTCATACATTTATAGCTCTT 58.260 34.615 9.31 0.00 43.51 2.85
2716 7609 8.870116 TGAGCCTTCATACATTTATAGCTCTTA 58.130 33.333 9.31 0.00 43.51 2.10
2717 7610 9.364989 GAGCCTTCATACATTTATAGCTCTTAG 57.635 37.037 0.00 0.00 40.73 2.18
2718 7611 8.875168 AGCCTTCATACATTTATAGCTCTTAGT 58.125 33.333 0.00 0.00 0.00 2.24
2719 7612 8.930760 GCCTTCATACATTTATAGCTCTTAGTG 58.069 37.037 0.00 0.00 0.00 2.74
2720 7613 8.930760 CCTTCATACATTTATAGCTCTTAGTGC 58.069 37.037 0.00 0.00 0.00 4.40
2721 7614 9.481340 CTTCATACATTTATAGCTCTTAGTGCA 57.519 33.333 8.99 0.00 0.00 4.57
2723 7616 9.645059 TCATACATTTATAGCTCTTAGTGCATC 57.355 33.333 8.99 0.00 0.00 3.91
2724 7617 8.877779 CATACATTTATAGCTCTTAGTGCATCC 58.122 37.037 8.99 0.00 0.00 3.51
2725 7618 5.928839 ACATTTATAGCTCTTAGTGCATCCG 59.071 40.000 8.99 0.00 0.00 4.18
2726 7619 5.531122 TTTATAGCTCTTAGTGCATCCGT 57.469 39.130 8.99 0.00 0.00 4.69
2727 7620 5.531122 TTATAGCTCTTAGTGCATCCGTT 57.469 39.130 8.99 0.00 0.00 4.44
2728 7621 2.015736 AGCTCTTAGTGCATCCGTTG 57.984 50.000 8.99 0.00 0.00 4.10
2745 7638 2.057137 TTGCATGGCAATCCCTACTC 57.943 50.000 0.00 0.00 43.99 2.59
2746 7639 0.183492 TGCATGGCAATCCCTACTCC 59.817 55.000 0.00 0.00 34.76 3.85
2747 7640 0.475906 GCATGGCAATCCCTACTCCT 59.524 55.000 0.00 0.00 0.00 3.69
2748 7641 1.544314 GCATGGCAATCCCTACTCCTC 60.544 57.143 0.00 0.00 0.00 3.71
2749 7642 1.770658 CATGGCAATCCCTACTCCTCA 59.229 52.381 0.00 0.00 0.00 3.86
2750 7643 1.204146 TGGCAATCCCTACTCCTCAC 58.796 55.000 0.00 0.00 0.00 3.51
2751 7644 1.204146 GGCAATCCCTACTCCTCACA 58.796 55.000 0.00 0.00 0.00 3.58
2752 7645 1.771255 GGCAATCCCTACTCCTCACAT 59.229 52.381 0.00 0.00 0.00 3.21
2753 7646 2.173569 GGCAATCCCTACTCCTCACATT 59.826 50.000 0.00 0.00 0.00 2.71
2754 7647 3.209410 GCAATCCCTACTCCTCACATTG 58.791 50.000 0.00 0.00 0.00 2.82
2755 7648 3.118261 GCAATCCCTACTCCTCACATTGA 60.118 47.826 0.00 0.00 0.00 2.57
2756 7649 4.446371 CAATCCCTACTCCTCACATTGAC 58.554 47.826 0.00 0.00 0.00 3.18
2757 7650 3.184382 TCCCTACTCCTCACATTGACA 57.816 47.619 0.00 0.00 0.00 3.58
2758 7651 3.724478 TCCCTACTCCTCACATTGACAT 58.276 45.455 0.00 0.00 0.00 3.06
2759 7652 3.706594 TCCCTACTCCTCACATTGACATC 59.293 47.826 0.00 0.00 0.00 3.06
2760 7653 3.452264 CCCTACTCCTCACATTGACATCA 59.548 47.826 0.00 0.00 0.00 3.07
2761 7654 4.080919 CCCTACTCCTCACATTGACATCAA 60.081 45.833 0.00 0.00 40.51 2.57
2762 7655 5.397221 CCCTACTCCTCACATTGACATCAAT 60.397 44.000 1.11 1.11 46.62 2.57
2763 7656 6.118170 CCTACTCCTCACATTGACATCAATT 58.882 40.000 4.32 0.00 43.48 2.32
2764 7657 5.892160 ACTCCTCACATTGACATCAATTG 57.108 39.130 4.32 0.00 43.48 2.32
2765 7658 5.563592 ACTCCTCACATTGACATCAATTGA 58.436 37.500 11.26 11.26 43.48 2.57
2766 7659 6.185511 ACTCCTCACATTGACATCAATTGAT 58.814 36.000 15.36 15.36 43.48 2.57
2776 7669 3.026630 CATCAATTGATGGGCATCTGC 57.973 47.619 32.24 0.00 46.09 4.26
2777 7670 2.146920 TCAATTGATGGGCATCTGCA 57.853 45.000 3.38 0.00 44.36 4.41
2778 7671 2.673258 TCAATTGATGGGCATCTGCAT 58.327 42.857 3.38 0.00 44.36 3.96
2779 7672 3.834938 TCAATTGATGGGCATCTGCATA 58.165 40.909 3.38 0.00 44.36 3.14
2780 7673 3.824443 TCAATTGATGGGCATCTGCATAG 59.176 43.478 3.38 0.00 44.36 2.23
2781 7674 1.612676 TTGATGGGCATCTGCATAGC 58.387 50.000 4.33 0.00 44.36 2.97
2785 7678 2.111878 GGCATCTGCATAGCCCGT 59.888 61.111 11.89 0.00 42.58 5.28
2786 7679 1.526917 GGCATCTGCATAGCCCGTT 60.527 57.895 11.89 0.00 42.58 4.44
2787 7680 1.650912 GCATCTGCATAGCCCGTTG 59.349 57.895 0.00 0.00 41.59 4.10
2788 7681 0.815213 GCATCTGCATAGCCCGTTGA 60.815 55.000 0.00 0.00 41.59 3.18
2789 7682 1.888215 CATCTGCATAGCCCGTTGAT 58.112 50.000 0.00 0.00 0.00 2.57
2790 7683 2.224606 CATCTGCATAGCCCGTTGATT 58.775 47.619 0.00 0.00 0.00 2.57
2791 7684 3.402110 CATCTGCATAGCCCGTTGATTA 58.598 45.455 0.00 0.00 0.00 1.75
2792 7685 3.111853 TCTGCATAGCCCGTTGATTAG 57.888 47.619 0.00 0.00 0.00 1.73
2793 7686 1.532868 CTGCATAGCCCGTTGATTAGC 59.467 52.381 0.00 0.00 0.00 3.09
2794 7687 0.875059 GCATAGCCCGTTGATTAGCC 59.125 55.000 0.00 0.00 0.00 3.93
2795 7688 1.148310 CATAGCCCGTTGATTAGCCG 58.852 55.000 0.00 0.00 0.00 5.52
2796 7689 0.602905 ATAGCCCGTTGATTAGCCGC 60.603 55.000 0.00 0.00 0.00 6.53
2797 7690 2.964438 TAGCCCGTTGATTAGCCGCG 62.964 60.000 0.00 0.00 0.00 6.46
2798 7691 2.510691 CCCGTTGATTAGCCGCGT 60.511 61.111 4.92 0.00 0.00 6.01
2799 7692 2.522638 CCCGTTGATTAGCCGCGTC 61.523 63.158 4.92 0.00 0.00 5.19
2800 7693 2.613486 CGTTGATTAGCCGCGTCG 59.387 61.111 4.92 0.00 0.00 5.12
2801 7694 1.870458 CGTTGATTAGCCGCGTCGA 60.870 57.895 4.92 0.00 0.00 4.20
2802 7695 1.206745 CGTTGATTAGCCGCGTCGAT 61.207 55.000 4.92 0.00 0.00 3.59
2803 7696 0.229753 GTTGATTAGCCGCGTCGATG 59.770 55.000 4.92 0.00 0.00 3.84
2804 7697 0.179121 TTGATTAGCCGCGTCGATGT 60.179 50.000 4.92 0.00 0.00 3.06
2805 7698 0.869880 TGATTAGCCGCGTCGATGTG 60.870 55.000 11.30 11.30 0.00 3.21
2806 7699 0.594028 GATTAGCCGCGTCGATGTGA 60.594 55.000 19.59 0.00 0.00 3.58
2807 7700 0.595053 ATTAGCCGCGTCGATGTGAG 60.595 55.000 19.59 10.47 0.00 3.51
2808 7701 1.650314 TTAGCCGCGTCGATGTGAGA 61.650 55.000 19.59 1.43 0.00 3.27
2809 7702 2.319011 TAGCCGCGTCGATGTGAGAC 62.319 60.000 19.59 8.49 35.41 3.36
2810 7703 2.485582 CCGCGTCGATGTGAGACT 59.514 61.111 19.59 0.00 36.53 3.24
2811 7704 1.154016 CCGCGTCGATGTGAGACTT 60.154 57.895 19.59 0.00 36.53 3.01
2812 7705 0.732880 CCGCGTCGATGTGAGACTTT 60.733 55.000 19.59 0.00 36.53 2.66
2813 7706 0.635731 CGCGTCGATGTGAGACTTTC 59.364 55.000 12.94 0.00 36.53 2.62
2814 7707 1.729472 CGCGTCGATGTGAGACTTTCT 60.729 52.381 12.94 0.00 36.53 2.52
2815 7708 1.914700 GCGTCGATGTGAGACTTTCTC 59.085 52.381 6.48 0.00 43.65 2.87
2816 7709 2.520979 CGTCGATGTGAGACTTTCTCC 58.479 52.381 0.00 0.00 42.73 3.71
2817 7710 2.162608 CGTCGATGTGAGACTTTCTCCT 59.837 50.000 0.00 0.00 42.73 3.69
2818 7711 3.366476 CGTCGATGTGAGACTTTCTCCTT 60.366 47.826 0.00 0.00 42.73 3.36
2819 7712 4.561105 GTCGATGTGAGACTTTCTCCTTT 58.439 43.478 0.76 0.00 42.73 3.11
2820 7713 4.991687 GTCGATGTGAGACTTTCTCCTTTT 59.008 41.667 0.76 0.00 42.73 2.27
2821 7714 5.467063 GTCGATGTGAGACTTTCTCCTTTTT 59.533 40.000 0.76 0.00 42.73 1.94
2843 7736 8.575649 TTTTTGTCTTCTCCATATAAACCTCC 57.424 34.615 0.00 0.00 0.00 4.30
2844 7737 6.884472 TTGTCTTCTCCATATAAACCTCCA 57.116 37.500 0.00 0.00 0.00 3.86
2845 7738 7.451731 TTGTCTTCTCCATATAAACCTCCAT 57.548 36.000 0.00 0.00 0.00 3.41
2846 7739 7.067496 TGTCTTCTCCATATAAACCTCCATC 57.933 40.000 0.00 0.00 0.00 3.51
2847 7740 6.615316 TGTCTTCTCCATATAAACCTCCATCA 59.385 38.462 0.00 0.00 0.00 3.07
2848 7741 7.293299 TGTCTTCTCCATATAAACCTCCATCAT 59.707 37.037 0.00 0.00 0.00 2.45
2849 7742 8.160106 GTCTTCTCCATATAAACCTCCATCATT 58.840 37.037 0.00 0.00 0.00 2.57
2850 7743 9.392506 TCTTCTCCATATAAACCTCCATCATTA 57.607 33.333 0.00 0.00 0.00 1.90
2863 7756 9.965902 AACCTCCATCATTATATTCTATTCCAC 57.034 33.333 0.00 0.00 0.00 4.02
2864 7757 8.552296 ACCTCCATCATTATATTCTATTCCACC 58.448 37.037 0.00 0.00 0.00 4.61
2865 7758 8.776119 CCTCCATCATTATATTCTATTCCACCT 58.224 37.037 0.00 0.00 0.00 4.00
2879 7772 8.998277 TCTATTCCACCTATAGTGCTATATCC 57.002 38.462 0.00 0.00 45.83 2.59
2880 7773 8.566109 TCTATTCCACCTATAGTGCTATATCCA 58.434 37.037 0.00 0.00 45.83 3.41
2881 7774 9.373450 CTATTCCACCTATAGTGCTATATCCAT 57.627 37.037 0.00 0.00 45.83 3.41
2882 7775 7.423844 TTCCACCTATAGTGCTATATCCATG 57.576 40.000 0.00 0.00 45.83 3.66
2883 7776 5.899547 TCCACCTATAGTGCTATATCCATGG 59.100 44.000 4.97 4.97 45.83 3.66
2884 7777 5.453903 CCACCTATAGTGCTATATCCATGGC 60.454 48.000 6.96 0.00 45.83 4.40
2885 7778 5.365025 CACCTATAGTGCTATATCCATGGCT 59.635 44.000 6.96 0.00 40.28 4.75
2886 7779 5.966935 ACCTATAGTGCTATATCCATGGCTT 59.033 40.000 6.96 0.00 39.29 4.35
2887 7780 6.126940 ACCTATAGTGCTATATCCATGGCTTG 60.127 42.308 6.96 0.00 39.29 4.01
2888 7781 2.787994 AGTGCTATATCCATGGCTTGC 58.212 47.619 6.96 7.50 39.29 4.01
2889 7782 1.466167 GTGCTATATCCATGGCTTGCG 59.534 52.381 6.96 0.00 39.29 4.85
2890 7783 0.449388 GCTATATCCATGGCTTGCGC 59.551 55.000 6.96 0.00 35.84 6.09
2891 7784 1.947678 GCTATATCCATGGCTTGCGCT 60.948 52.381 9.73 0.00 35.84 5.92
2892 7785 2.005451 CTATATCCATGGCTTGCGCTC 58.995 52.381 9.73 0.00 36.09 5.03
2893 7786 0.109153 ATATCCATGGCTTGCGCTCA 59.891 50.000 9.73 2.10 36.09 4.26
2894 7787 0.109153 TATCCATGGCTTGCGCTCAT 59.891 50.000 9.73 4.62 36.09 2.90
2895 7788 1.452953 ATCCATGGCTTGCGCTCATG 61.453 55.000 9.73 16.09 40.96 3.07
2896 7789 2.412323 CCATGGCTTGCGCTCATGT 61.412 57.895 21.89 0.94 40.31 3.21
2897 7790 1.096967 CCATGGCTTGCGCTCATGTA 61.097 55.000 21.89 3.90 40.31 2.29
2898 7791 0.949397 CATGGCTTGCGCTCATGTAT 59.051 50.000 9.73 0.00 38.69 2.29
2899 7792 1.335810 CATGGCTTGCGCTCATGTATT 59.664 47.619 9.73 0.00 38.69 1.89
2900 7793 0.734309 TGGCTTGCGCTCATGTATTG 59.266 50.000 9.73 0.00 36.09 1.90
2901 7794 0.593263 GGCTTGCGCTCATGTATTGC 60.593 55.000 9.73 0.00 36.09 3.56
2910 7803 2.779755 TCATGTATTGCGTGAGGGTT 57.220 45.000 0.00 0.00 38.14 4.11
2911 7804 2.355197 TCATGTATTGCGTGAGGGTTG 58.645 47.619 0.00 0.00 38.14 3.77
2912 7805 2.027653 TCATGTATTGCGTGAGGGTTGA 60.028 45.455 0.00 0.00 38.14 3.18
2913 7806 2.552599 TGTATTGCGTGAGGGTTGAA 57.447 45.000 0.00 0.00 0.00 2.69
2914 7807 2.852449 TGTATTGCGTGAGGGTTGAAA 58.148 42.857 0.00 0.00 0.00 2.69
2915 7808 3.215151 TGTATTGCGTGAGGGTTGAAAA 58.785 40.909 0.00 0.00 0.00 2.29
2916 7809 3.632604 TGTATTGCGTGAGGGTTGAAAAA 59.367 39.130 0.00 0.00 0.00 1.94
2917 7810 2.861462 TTGCGTGAGGGTTGAAAAAG 57.139 45.000 0.00 0.00 0.00 2.27
2918 7811 0.383949 TGCGTGAGGGTTGAAAAAGC 59.616 50.000 0.00 0.00 0.00 3.51
2919 7812 0.668535 GCGTGAGGGTTGAAAAAGCT 59.331 50.000 0.00 0.00 0.00 3.74
2920 7813 1.600413 GCGTGAGGGTTGAAAAAGCTG 60.600 52.381 0.00 0.00 0.00 4.24
2921 7814 1.946768 CGTGAGGGTTGAAAAAGCTGA 59.053 47.619 0.00 0.00 0.00 4.26
2922 7815 2.357637 CGTGAGGGTTGAAAAAGCTGAA 59.642 45.455 0.00 0.00 0.00 3.02
2923 7816 3.548818 CGTGAGGGTTGAAAAAGCTGAAG 60.549 47.826 0.00 0.00 0.00 3.02
2924 7817 2.362077 TGAGGGTTGAAAAAGCTGAAGC 59.638 45.455 0.00 0.00 42.49 3.86
2954 7847 6.973229 AAAAATATGAACCAATTGCTCAGC 57.027 33.333 12.36 0.00 0.00 4.26
2955 7848 5.927281 AAATATGAACCAATTGCTCAGCT 57.073 34.783 12.36 0.00 0.00 4.24
2956 7849 5.511234 AATATGAACCAATTGCTCAGCTC 57.489 39.130 12.36 0.00 0.00 4.09
2957 7850 1.159285 TGAACCAATTGCTCAGCTCG 58.841 50.000 0.00 0.00 0.00 5.03
2958 7851 1.160137 GAACCAATTGCTCAGCTCGT 58.840 50.000 0.00 0.00 0.00 4.18
2959 7852 1.129437 GAACCAATTGCTCAGCTCGTC 59.871 52.381 0.00 0.00 0.00 4.20
2960 7853 0.035317 ACCAATTGCTCAGCTCGTCA 59.965 50.000 0.00 0.00 0.00 4.35
2961 7854 0.725686 CCAATTGCTCAGCTCGTCAG 59.274 55.000 0.00 0.00 0.00 3.51
2970 7863 4.681978 GCTCGTCAGCGGGGTTGT 62.682 66.667 0.00 0.00 39.39 3.32
2971 7864 2.738521 CTCGTCAGCGGGGTTGTG 60.739 66.667 0.00 0.00 38.89 3.33
2972 7865 4.980805 TCGTCAGCGGGGTTGTGC 62.981 66.667 0.00 0.00 38.89 4.57
2974 7867 2.672996 GTCAGCGGGGTTGTGCAT 60.673 61.111 0.00 0.00 0.00 3.96
2975 7868 2.672651 TCAGCGGGGTTGTGCATG 60.673 61.111 0.00 0.00 0.00 4.06
2976 7869 2.672651 CAGCGGGGTTGTGCATGA 60.673 61.111 0.00 0.00 0.00 3.07
2977 7870 2.048023 CAGCGGGGTTGTGCATGAT 61.048 57.895 0.00 0.00 0.00 2.45
2978 7871 2.048023 AGCGGGGTTGTGCATGATG 61.048 57.895 0.00 0.00 0.00 3.07
2979 7872 3.067480 GCGGGGTTGTGCATGATGG 62.067 63.158 0.00 0.00 0.00 3.51
2980 7873 2.417257 CGGGGTTGTGCATGATGGG 61.417 63.158 0.00 0.00 0.00 4.00
2981 7874 1.000233 GGGGTTGTGCATGATGGGA 60.000 57.895 0.00 0.00 0.00 4.37
2982 7875 1.039233 GGGGTTGTGCATGATGGGAG 61.039 60.000 0.00 0.00 0.00 4.30
2983 7876 1.669999 GGGTTGTGCATGATGGGAGC 61.670 60.000 0.00 0.00 0.00 4.70
2984 7877 0.966875 GGTTGTGCATGATGGGAGCA 60.967 55.000 0.00 0.00 35.63 4.26
2985 7878 1.108776 GTTGTGCATGATGGGAGCAT 58.891 50.000 0.00 0.00 40.78 3.79
2986 7879 1.479323 GTTGTGCATGATGGGAGCATT 59.521 47.619 0.00 0.00 40.78 3.56
2987 7880 1.855295 TGTGCATGATGGGAGCATTT 58.145 45.000 0.00 0.00 40.78 2.32
2988 7881 2.181125 TGTGCATGATGGGAGCATTTT 58.819 42.857 0.00 0.00 40.78 1.82
2989 7882 2.093921 TGTGCATGATGGGAGCATTTTG 60.094 45.455 0.00 0.00 40.78 2.44
2990 7883 2.093869 GTGCATGATGGGAGCATTTTGT 60.094 45.455 0.00 0.00 40.78 2.83
2991 7884 2.093921 TGCATGATGGGAGCATTTTGTG 60.094 45.455 0.00 0.00 32.55 3.33
2992 7885 2.093869 GCATGATGGGAGCATTTTGTGT 60.094 45.455 0.00 0.00 0.00 3.72
2993 7886 3.517602 CATGATGGGAGCATTTTGTGTG 58.482 45.455 0.00 0.00 0.00 3.82
2994 7887 2.874014 TGATGGGAGCATTTTGTGTGA 58.126 42.857 0.00 0.00 0.00 3.58
2995 7888 2.557924 TGATGGGAGCATTTTGTGTGAC 59.442 45.455 0.00 0.00 0.00 3.67
2996 7889 0.950836 TGGGAGCATTTTGTGTGACG 59.049 50.000 0.00 0.00 0.00 4.35
2997 7890 1.234821 GGGAGCATTTTGTGTGACGA 58.765 50.000 0.00 0.00 0.00 4.20
2998 7891 1.606668 GGGAGCATTTTGTGTGACGAA 59.393 47.619 0.00 0.00 0.00 3.85
2999 7892 2.034053 GGGAGCATTTTGTGTGACGAAA 59.966 45.455 0.00 0.00 36.06 3.46
3000 7893 3.490078 GGGAGCATTTTGTGTGACGAAAA 60.490 43.478 0.00 0.00 35.32 2.29
3001 7894 4.298332 GGAGCATTTTGTGTGACGAAAAT 58.702 39.130 0.00 0.75 35.32 1.82
3002 7895 4.148696 GGAGCATTTTGTGTGACGAAAATG 59.851 41.667 19.95 19.95 45.90 2.32
3003 7896 4.930963 AGCATTTTGTGTGACGAAAATGA 58.069 34.783 24.85 0.00 45.98 2.57
3004 7897 5.347342 AGCATTTTGTGTGACGAAAATGAA 58.653 33.333 24.85 0.00 45.98 2.57
3005 7898 5.459762 AGCATTTTGTGTGACGAAAATGAAG 59.540 36.000 24.85 9.07 45.98 3.02
3006 7899 5.659426 CATTTTGTGTGACGAAAATGAAGC 58.341 37.500 19.73 0.00 45.98 3.86
3007 7900 4.362932 TTTGTGTGACGAAAATGAAGCA 57.637 36.364 0.00 0.00 0.00 3.91
3008 7901 4.566545 TTGTGTGACGAAAATGAAGCAT 57.433 36.364 0.00 0.00 0.00 3.79
3009 7902 3.887741 TGTGTGACGAAAATGAAGCATG 58.112 40.909 0.00 0.00 0.00 4.06
3010 7903 3.236816 GTGTGACGAAAATGAAGCATGG 58.763 45.455 0.00 0.00 0.00 3.66
3011 7904 2.253603 GTGACGAAAATGAAGCATGGC 58.746 47.619 0.00 0.00 0.00 4.40
3012 7905 1.202114 TGACGAAAATGAAGCATGGCC 59.798 47.619 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 186 2.032634 GTTGCCATGGAGTTCGCGA 61.033 57.895 18.40 3.71 0.00 5.87
191 202 0.330604 ATGCAGATCAGGTGGCAGTT 59.669 50.000 0.00 0.00 39.95 3.16
430 442 3.461773 CGGCTCGTCCCTGGTCAT 61.462 66.667 0.00 0.00 0.00 3.06
1143 5608 4.623002 TGTTCACTTGCGTAATAGACACA 58.377 39.130 0.00 0.00 0.00 3.72
1162 5627 4.336433 CCTCCACTTGCGAATATGATTGTT 59.664 41.667 0.00 0.00 0.00 2.83
1530 6416 5.457633 GGCCCATTACATATTTCCCAGTAGT 60.458 44.000 0.00 0.00 0.00 2.73
1532 6418 4.202631 GGGCCCATTACATATTTCCCAGTA 60.203 45.833 19.95 0.00 32.89 2.74
1546 6432 4.434354 GCACACCGGGGCCCATTA 62.434 66.667 26.86 0.00 0.00 1.90
1576 6462 9.821662 GTTTATACTTGTCTTCCACAACAATAC 57.178 33.333 0.00 0.00 40.29 1.89
1596 6482 4.202419 CCCCTCCATGACATTCGGTTTATA 60.202 45.833 0.00 0.00 0.00 0.98
1632 6518 5.513233 AGGAAGATGTTGCAATACCTCATT 58.487 37.500 0.59 0.00 0.00 2.57
1656 6542 7.397761 AGCAGTAGGAAGTACAAAGTTAGATCT 59.602 37.037 0.00 0.00 33.55 2.75
1839 6725 3.149196 CCATGACAGCCTTGTACAAGTT 58.851 45.455 29.05 16.96 37.76 2.66
2149 7036 2.964740 TGAAGCAGTGCATCACTAGAC 58.035 47.619 18.57 0.00 43.43 2.59
2340 7233 4.775780 ACTGTGTTTGGTAGCCTGTATCTA 59.224 41.667 0.00 0.00 0.00 1.98
2519 7412 2.028876 GGGTGTGTTTGGTAGCTGTTT 58.971 47.619 0.00 0.00 0.00 2.83
2544 7437 6.533730 TGAAAGTGACAACATAGGAGACAAT 58.466 36.000 0.00 0.00 0.00 2.71
2546 7439 5.545063 TGAAAGTGACAACATAGGAGACA 57.455 39.130 0.00 0.00 0.00 3.41
2547 7440 9.250624 GTATATGAAAGTGACAACATAGGAGAC 57.749 37.037 0.00 0.00 0.00 3.36
2554 7447 7.987458 CCCACTAGTATATGAAAGTGACAACAT 59.013 37.037 12.27 0.00 41.47 2.71
2556 7449 7.553334 TCCCACTAGTATATGAAAGTGACAAC 58.447 38.462 12.27 0.00 41.47 3.32
2557 7450 7.727578 TCCCACTAGTATATGAAAGTGACAA 57.272 36.000 12.27 0.00 41.47 3.18
2558 7451 7.727578 TTCCCACTAGTATATGAAAGTGACA 57.272 36.000 12.27 0.00 41.47 3.58
2559 7452 9.614792 AAATTCCCACTAGTATATGAAAGTGAC 57.385 33.333 12.27 0.00 41.47 3.67
2575 7468 8.971073 CCAAGTTCTATAATGAAAATTCCCACT 58.029 33.333 0.00 0.00 0.00 4.00
2576 7469 7.706607 GCCAAGTTCTATAATGAAAATTCCCAC 59.293 37.037 0.00 0.00 0.00 4.61
2577 7470 7.619302 AGCCAAGTTCTATAATGAAAATTCCCA 59.381 33.333 0.00 0.00 0.00 4.37
2578 7471 8.011844 AGCCAAGTTCTATAATGAAAATTCCC 57.988 34.615 0.00 0.00 0.00 3.97
2579 7472 9.305925 CAAGCCAAGTTCTATAATGAAAATTCC 57.694 33.333 0.00 0.00 0.00 3.01
2580 7473 9.860898 ACAAGCCAAGTTCTATAATGAAAATTC 57.139 29.630 0.00 0.00 0.00 2.17
2590 7483 9.555727 GTTGGAATATACAAGCCAAGTTCTATA 57.444 33.333 0.00 0.00 40.75 1.31
2591 7484 7.226720 CGTTGGAATATACAAGCCAAGTTCTAT 59.773 37.037 0.00 0.00 40.75 1.98
2592 7485 6.537301 CGTTGGAATATACAAGCCAAGTTCTA 59.463 38.462 0.00 0.00 40.75 2.10
2593 7486 5.354234 CGTTGGAATATACAAGCCAAGTTCT 59.646 40.000 0.00 0.00 40.75 3.01
2594 7487 5.353123 TCGTTGGAATATACAAGCCAAGTTC 59.647 40.000 0.00 0.00 40.75 3.01
2595 7488 5.250200 TCGTTGGAATATACAAGCCAAGTT 58.750 37.500 0.00 0.00 40.75 2.66
2596 7489 4.839121 TCGTTGGAATATACAAGCCAAGT 58.161 39.130 0.00 0.00 40.75 3.16
2597 7490 5.277974 CCATCGTTGGAATATACAAGCCAAG 60.278 44.000 6.68 0.00 46.92 3.61
2598 7491 4.578516 CCATCGTTGGAATATACAAGCCAA 59.421 41.667 6.68 0.00 46.92 4.52
2599 7492 4.133820 CCATCGTTGGAATATACAAGCCA 58.866 43.478 6.68 0.00 46.92 4.75
2600 7493 3.502211 CCCATCGTTGGAATATACAAGCC 59.498 47.826 14.27 0.00 46.92 4.35
2601 7494 3.058224 GCCCATCGTTGGAATATACAAGC 60.058 47.826 14.27 1.81 46.92 4.01
2602 7495 4.389374 AGCCCATCGTTGGAATATACAAG 58.611 43.478 14.27 0.00 46.92 3.16
2603 7496 4.431416 AGCCCATCGTTGGAATATACAA 57.569 40.909 14.27 0.00 46.92 2.41
2604 7497 4.385825 GAAGCCCATCGTTGGAATATACA 58.614 43.478 14.27 0.00 46.92 2.29
2605 7498 3.751698 GGAAGCCCATCGTTGGAATATAC 59.248 47.826 14.27 1.00 46.92 1.47
2606 7499 3.650942 AGGAAGCCCATCGTTGGAATATA 59.349 43.478 14.27 0.00 46.92 0.86
2607 7500 2.443255 AGGAAGCCCATCGTTGGAATAT 59.557 45.455 14.27 0.00 46.92 1.28
2608 7501 1.843851 AGGAAGCCCATCGTTGGAATA 59.156 47.619 14.27 0.00 46.92 1.75
2609 7502 0.625849 AGGAAGCCCATCGTTGGAAT 59.374 50.000 14.27 0.00 46.92 3.01
2610 7503 0.035439 GAGGAAGCCCATCGTTGGAA 60.035 55.000 14.27 0.00 46.92 3.53
2611 7504 1.198094 TGAGGAAGCCCATCGTTGGA 61.198 55.000 14.27 0.00 46.92 3.53
2612 7505 0.322456 TTGAGGAAGCCCATCGTTGG 60.322 55.000 5.47 5.47 43.23 3.77
2613 7506 1.533625 TTTGAGGAAGCCCATCGTTG 58.466 50.000 0.00 0.00 33.88 4.10
2614 7507 2.094675 CATTTGAGGAAGCCCATCGTT 58.905 47.619 0.00 0.00 33.88 3.85
2615 7508 1.755179 CATTTGAGGAAGCCCATCGT 58.245 50.000 0.00 0.00 33.88 3.73
2616 7509 0.383231 GCATTTGAGGAAGCCCATCG 59.617 55.000 0.00 0.00 33.88 3.84
2617 7510 0.749049 GGCATTTGAGGAAGCCCATC 59.251 55.000 0.00 0.00 41.25 3.51
2618 7511 2.906268 GGCATTTGAGGAAGCCCAT 58.094 52.632 0.00 0.00 41.25 4.00
2619 7512 4.440145 GGCATTTGAGGAAGCCCA 57.560 55.556 0.00 0.00 41.25 5.36
2621 7514 1.685148 CTAGGGCATTTGAGGAAGCC 58.315 55.000 0.00 0.00 46.28 4.35
2622 7515 1.028130 GCTAGGGCATTTGAGGAAGC 58.972 55.000 0.00 0.00 38.54 3.86
2623 7516 2.172293 AGAGCTAGGGCATTTGAGGAAG 59.828 50.000 0.00 0.00 41.70 3.46
2624 7517 2.200081 AGAGCTAGGGCATTTGAGGAA 58.800 47.619 0.00 0.00 41.70 3.36
2625 7518 1.885049 AGAGCTAGGGCATTTGAGGA 58.115 50.000 0.00 0.00 41.70 3.71
2626 7519 2.092753 TGAAGAGCTAGGGCATTTGAGG 60.093 50.000 0.00 0.00 41.70 3.86
2627 7520 3.272574 TGAAGAGCTAGGGCATTTGAG 57.727 47.619 0.00 0.00 41.70 3.02
2628 7521 3.200605 TCATGAAGAGCTAGGGCATTTGA 59.799 43.478 0.00 0.00 41.70 2.69
2629 7522 3.548770 TCATGAAGAGCTAGGGCATTTG 58.451 45.455 0.00 0.00 41.70 2.32
2630 7523 3.818180 CTCATGAAGAGCTAGGGCATTT 58.182 45.455 0.00 0.00 41.70 2.32
2631 7524 3.488778 CTCATGAAGAGCTAGGGCATT 57.511 47.619 0.00 0.00 41.70 3.56
2642 7535 2.555325 CCAACTTGCTTGCTCATGAAGA 59.445 45.455 0.00 0.00 0.00 2.87
2643 7536 2.555325 TCCAACTTGCTTGCTCATGAAG 59.445 45.455 0.00 0.00 0.00 3.02
2644 7537 2.585330 TCCAACTTGCTTGCTCATGAA 58.415 42.857 0.00 0.00 0.00 2.57
2645 7538 2.275134 TCCAACTTGCTTGCTCATGA 57.725 45.000 0.00 0.00 0.00 3.07
2646 7539 2.876091 CATCCAACTTGCTTGCTCATG 58.124 47.619 0.00 0.00 0.00 3.07
2647 7540 1.203994 GCATCCAACTTGCTTGCTCAT 59.796 47.619 6.83 0.00 37.14 2.90
2648 7541 0.599558 GCATCCAACTTGCTTGCTCA 59.400 50.000 6.83 0.00 37.14 4.26
2649 7542 0.599558 TGCATCCAACTTGCTTGCTC 59.400 50.000 12.63 0.00 40.77 4.26
2650 7543 0.316204 GTGCATCCAACTTGCTTGCT 59.684 50.000 12.63 0.00 40.77 3.91
2651 7544 0.032403 TGTGCATCCAACTTGCTTGC 59.968 50.000 0.00 7.05 40.77 4.01
2652 7545 1.603678 GGTGTGCATCCAACTTGCTTG 60.604 52.381 0.00 0.00 40.77 4.01
2653 7546 0.675633 GGTGTGCATCCAACTTGCTT 59.324 50.000 0.00 0.00 40.77 3.91
2654 7547 1.181098 GGGTGTGCATCCAACTTGCT 61.181 55.000 11.91 0.00 40.77 3.91
2655 7548 1.290009 GGGTGTGCATCCAACTTGC 59.710 57.895 11.91 0.00 40.55 4.01
2656 7549 0.314935 GTGGGTGTGCATCCAACTTG 59.685 55.000 5.65 0.00 44.47 3.16
2657 7550 0.185901 AGTGGGTGTGCATCCAACTT 59.814 50.000 13.15 0.00 44.47 2.66
2658 7551 0.185901 AAGTGGGTGTGCATCCAACT 59.814 50.000 13.15 13.15 44.47 3.16
2659 7552 1.812571 CTAAGTGGGTGTGCATCCAAC 59.187 52.381 5.65 9.55 44.47 3.77
2660 7553 1.423541 ACTAAGTGGGTGTGCATCCAA 59.576 47.619 5.65 0.00 44.47 3.53
2661 7554 1.064003 ACTAAGTGGGTGTGCATCCA 58.936 50.000 0.00 0.00 39.79 3.41
2662 7555 2.200373 AACTAAGTGGGTGTGCATCC 57.800 50.000 0.00 0.00 0.00 3.51
2663 7556 3.412386 AGAAACTAAGTGGGTGTGCATC 58.588 45.455 0.00 0.00 0.00 3.91
2664 7557 3.508845 AGAAACTAAGTGGGTGTGCAT 57.491 42.857 0.00 0.00 0.00 3.96
2665 7558 3.290948 AAGAAACTAAGTGGGTGTGCA 57.709 42.857 0.00 0.00 0.00 4.57
2666 7559 4.142249 ACAAAAGAAACTAAGTGGGTGTGC 60.142 41.667 0.00 0.00 0.00 4.57
2667 7560 5.576447 ACAAAAGAAACTAAGTGGGTGTG 57.424 39.130 0.00 0.00 0.00 3.82
2668 7561 5.712917 TCAACAAAAGAAACTAAGTGGGTGT 59.287 36.000 0.00 0.00 0.00 4.16
2669 7562 6.202516 TCAACAAAAGAAACTAAGTGGGTG 57.797 37.500 0.00 0.00 0.00 4.61
2670 7563 5.163550 GCTCAACAAAAGAAACTAAGTGGGT 60.164 40.000 0.00 0.00 0.00 4.51
2671 7564 5.281727 GCTCAACAAAAGAAACTAAGTGGG 58.718 41.667 0.00 0.00 0.00 4.61
2672 7565 5.067805 AGGCTCAACAAAAGAAACTAAGTGG 59.932 40.000 0.00 0.00 0.00 4.00
2673 7566 6.136541 AGGCTCAACAAAAGAAACTAAGTG 57.863 37.500 0.00 0.00 0.00 3.16
2674 7567 6.377146 TGAAGGCTCAACAAAAGAAACTAAGT 59.623 34.615 0.00 0.00 0.00 2.24
2675 7568 6.795399 TGAAGGCTCAACAAAAGAAACTAAG 58.205 36.000 0.00 0.00 0.00 2.18
2676 7569 6.767524 TGAAGGCTCAACAAAAGAAACTAA 57.232 33.333 0.00 0.00 0.00 2.24
2677 7570 6.959639 ATGAAGGCTCAACAAAAGAAACTA 57.040 33.333 0.00 0.00 34.49 2.24
2678 7571 5.859205 ATGAAGGCTCAACAAAAGAAACT 57.141 34.783 0.00 0.00 34.49 2.66
2679 7572 6.503524 TGTATGAAGGCTCAACAAAAGAAAC 58.496 36.000 0.00 0.00 34.49 2.78
2680 7573 6.707440 TGTATGAAGGCTCAACAAAAGAAA 57.293 33.333 0.00 0.00 34.49 2.52
2681 7574 6.899393 ATGTATGAAGGCTCAACAAAAGAA 57.101 33.333 0.00 0.00 34.49 2.52
2682 7575 6.899393 AATGTATGAAGGCTCAACAAAAGA 57.101 33.333 0.00 0.00 34.49 2.52
2685 7578 8.405531 GCTATAAATGTATGAAGGCTCAACAAA 58.594 33.333 0.00 0.00 34.49 2.83
2686 7579 7.775093 AGCTATAAATGTATGAAGGCTCAACAA 59.225 33.333 0.00 0.00 34.49 2.83
2687 7580 7.282585 AGCTATAAATGTATGAAGGCTCAACA 58.717 34.615 0.00 0.00 34.49 3.33
2688 7581 7.659390 AGAGCTATAAATGTATGAAGGCTCAAC 59.341 37.037 16.73 0.00 43.87 3.18
2689 7582 7.739825 AGAGCTATAAATGTATGAAGGCTCAA 58.260 34.615 16.73 0.00 43.87 3.02
2690 7583 7.308450 AGAGCTATAAATGTATGAAGGCTCA 57.692 36.000 16.73 0.00 43.87 4.26
2691 7584 9.364989 CTAAGAGCTATAAATGTATGAAGGCTC 57.635 37.037 0.00 0.00 42.41 4.70
2692 7585 8.875168 ACTAAGAGCTATAAATGTATGAAGGCT 58.125 33.333 0.00 0.00 0.00 4.58
2693 7586 8.930760 CACTAAGAGCTATAAATGTATGAAGGC 58.069 37.037 0.00 0.00 0.00 4.35
2694 7587 8.930760 GCACTAAGAGCTATAAATGTATGAAGG 58.069 37.037 0.00 0.00 0.00 3.46
2695 7588 9.481340 TGCACTAAGAGCTATAAATGTATGAAG 57.519 33.333 0.00 0.00 0.00 3.02
2697 7590 9.645059 GATGCACTAAGAGCTATAAATGTATGA 57.355 33.333 0.00 0.00 0.00 2.15
2698 7591 8.877779 GGATGCACTAAGAGCTATAAATGTATG 58.122 37.037 0.00 0.00 0.00 2.39
2699 7592 7.761704 CGGATGCACTAAGAGCTATAAATGTAT 59.238 37.037 0.00 0.00 0.00 2.29
2700 7593 7.090808 CGGATGCACTAAGAGCTATAAATGTA 58.909 38.462 0.00 0.00 0.00 2.29
2701 7594 5.928839 CGGATGCACTAAGAGCTATAAATGT 59.071 40.000 0.00 0.00 0.00 2.71
2702 7595 5.928839 ACGGATGCACTAAGAGCTATAAATG 59.071 40.000 0.00 0.00 0.00 2.32
2703 7596 6.102897 ACGGATGCACTAAGAGCTATAAAT 57.897 37.500 0.00 0.00 0.00 1.40
2704 7597 5.531122 ACGGATGCACTAAGAGCTATAAA 57.469 39.130 0.00 0.00 0.00 1.40
2705 7598 5.289595 CAACGGATGCACTAAGAGCTATAA 58.710 41.667 0.00 0.00 0.00 0.98
2706 7599 4.871513 CAACGGATGCACTAAGAGCTATA 58.128 43.478 0.00 0.00 0.00 1.31
2707 7600 3.722147 CAACGGATGCACTAAGAGCTAT 58.278 45.455 0.00 0.00 0.00 2.97
2708 7601 3.165058 CAACGGATGCACTAAGAGCTA 57.835 47.619 0.00 0.00 0.00 3.32
2709 7602 2.015736 CAACGGATGCACTAAGAGCT 57.984 50.000 0.00 0.00 0.00 4.09
2727 7620 0.183492 GGAGTAGGGATTGCCATGCA 59.817 55.000 0.00 0.00 32.65 3.96
2728 7621 0.475906 AGGAGTAGGGATTGCCATGC 59.524 55.000 0.00 0.00 35.15 4.06
2729 7622 1.770658 TGAGGAGTAGGGATTGCCATG 59.229 52.381 0.00 0.00 35.15 3.66
2730 7623 1.771255 GTGAGGAGTAGGGATTGCCAT 59.229 52.381 0.00 0.00 35.15 4.40
2731 7624 1.204146 GTGAGGAGTAGGGATTGCCA 58.796 55.000 0.00 0.00 35.15 4.92
2732 7625 1.204146 TGTGAGGAGTAGGGATTGCC 58.796 55.000 0.00 0.00 0.00 4.52
2733 7626 3.118261 TCAATGTGAGGAGTAGGGATTGC 60.118 47.826 0.00 0.00 0.00 3.56
2734 7627 4.080919 TGTCAATGTGAGGAGTAGGGATTG 60.081 45.833 0.00 0.00 0.00 2.67
2735 7628 4.104086 TGTCAATGTGAGGAGTAGGGATT 58.896 43.478 0.00 0.00 0.00 3.01
2736 7629 3.724478 TGTCAATGTGAGGAGTAGGGAT 58.276 45.455 0.00 0.00 0.00 3.85
2737 7630 3.184382 TGTCAATGTGAGGAGTAGGGA 57.816 47.619 0.00 0.00 0.00 4.20
2738 7631 3.452264 TGATGTCAATGTGAGGAGTAGGG 59.548 47.826 0.00 0.00 0.00 3.53
2739 7632 4.743057 TGATGTCAATGTGAGGAGTAGG 57.257 45.455 0.00 0.00 0.00 3.18
2740 7633 6.820152 TCAATTGATGTCAATGTGAGGAGTAG 59.180 38.462 3.38 0.00 45.06 2.57
2741 7634 6.710278 TCAATTGATGTCAATGTGAGGAGTA 58.290 36.000 3.38 0.00 45.06 2.59
2742 7635 5.563592 TCAATTGATGTCAATGTGAGGAGT 58.436 37.500 3.38 0.00 45.06 3.85
2743 7636 6.495706 CATCAATTGATGTCAATGTGAGGAG 58.504 40.000 31.74 8.78 45.06 3.69
2744 7637 6.445357 CATCAATTGATGTCAATGTGAGGA 57.555 37.500 31.74 0.00 45.06 3.71
2754 7647 6.001127 TGCAGATGCCCATCAATTGATGTC 62.001 45.833 35.01 27.74 43.28 3.06
2755 7648 4.195190 TGCAGATGCCCATCAATTGATGT 61.195 43.478 35.01 22.91 43.28 3.06
2756 7649 2.364002 TGCAGATGCCCATCAATTGATG 59.636 45.455 32.70 32.70 43.81 3.07
2757 7650 2.673258 TGCAGATGCCCATCAATTGAT 58.327 42.857 15.36 15.36 40.22 2.57
2758 7651 2.146920 TGCAGATGCCCATCAATTGA 57.853 45.000 11.26 11.26 40.22 2.57
2759 7652 3.614150 GCTATGCAGATGCCCATCAATTG 60.614 47.826 10.58 0.00 40.22 2.32
2760 7653 2.561419 GCTATGCAGATGCCCATCAATT 59.439 45.455 10.58 0.00 40.22 2.32
2761 7654 2.168496 GCTATGCAGATGCCCATCAAT 58.832 47.619 10.58 4.33 40.22 2.57
2762 7655 1.612676 GCTATGCAGATGCCCATCAA 58.387 50.000 10.58 0.00 40.22 2.57
2763 7656 0.251033 GGCTATGCAGATGCCCATCA 60.251 55.000 14.25 0.00 40.71 3.07
2764 7657 2.564471 GGCTATGCAGATGCCCATC 58.436 57.895 14.25 0.00 40.71 3.51
2765 7658 4.837085 GGCTATGCAGATGCCCAT 57.163 55.556 14.25 0.00 40.71 4.00
2768 7661 1.526917 AACGGGCTATGCAGATGCC 60.527 57.895 16.20 16.20 45.42 4.40
2769 7662 0.815213 TCAACGGGCTATGCAGATGC 60.815 55.000 0.00 0.00 42.50 3.91
2770 7663 1.888215 ATCAACGGGCTATGCAGATG 58.112 50.000 0.00 0.00 0.00 2.90
2771 7664 2.645838 AATCAACGGGCTATGCAGAT 57.354 45.000 0.00 0.00 0.00 2.90
2772 7665 2.806745 GCTAATCAACGGGCTATGCAGA 60.807 50.000 0.00 0.00 0.00 4.26
2773 7666 1.532868 GCTAATCAACGGGCTATGCAG 59.467 52.381 0.00 0.00 0.00 4.41
2774 7667 1.593196 GCTAATCAACGGGCTATGCA 58.407 50.000 0.00 0.00 0.00 3.96
2775 7668 0.875059 GGCTAATCAACGGGCTATGC 59.125 55.000 0.00 0.00 0.00 3.14
2776 7669 1.148310 CGGCTAATCAACGGGCTATG 58.852 55.000 0.00 0.00 0.00 2.23
2777 7670 0.602905 GCGGCTAATCAACGGGCTAT 60.603 55.000 0.00 0.00 0.00 2.97
2778 7671 1.227438 GCGGCTAATCAACGGGCTA 60.227 57.895 0.00 0.00 0.00 3.93
2779 7672 2.513897 GCGGCTAATCAACGGGCT 60.514 61.111 0.00 0.00 0.00 5.19
2780 7673 3.937062 CGCGGCTAATCAACGGGC 61.937 66.667 0.00 0.00 33.98 6.13
2781 7674 2.510691 ACGCGGCTAATCAACGGG 60.511 61.111 12.47 0.00 44.60 5.28
2782 7675 2.856346 CGACGCGGCTAATCAACGG 61.856 63.158 11.76 0.00 0.00 4.44
2783 7676 1.206745 ATCGACGCGGCTAATCAACG 61.207 55.000 11.76 1.67 0.00 4.10
2784 7677 0.229753 CATCGACGCGGCTAATCAAC 59.770 55.000 11.76 0.00 0.00 3.18
2785 7678 0.179121 ACATCGACGCGGCTAATCAA 60.179 50.000 11.76 0.00 0.00 2.57
2786 7679 0.869880 CACATCGACGCGGCTAATCA 60.870 55.000 11.76 0.00 0.00 2.57
2787 7680 0.594028 TCACATCGACGCGGCTAATC 60.594 55.000 11.76 0.00 0.00 1.75
2788 7681 0.595053 CTCACATCGACGCGGCTAAT 60.595 55.000 11.76 0.00 0.00 1.73
2789 7682 1.226575 CTCACATCGACGCGGCTAA 60.227 57.895 11.76 0.00 0.00 3.09
2790 7683 2.110352 TCTCACATCGACGCGGCTA 61.110 57.895 11.76 0.00 0.00 3.93
2791 7684 3.440415 TCTCACATCGACGCGGCT 61.440 61.111 11.76 0.00 0.00 5.52
2792 7685 3.248171 GTCTCACATCGACGCGGC 61.248 66.667 12.47 6.41 0.00 6.53
2793 7686 0.732880 AAAGTCTCACATCGACGCGG 60.733 55.000 12.47 0.00 36.53 6.46
2794 7687 0.635731 GAAAGTCTCACATCGACGCG 59.364 55.000 3.53 3.53 36.53 6.01
2795 7688 1.914700 GAGAAAGTCTCACATCGACGC 59.085 52.381 0.32 0.00 42.90 5.19
2796 7689 2.162608 AGGAGAAAGTCTCACATCGACG 59.837 50.000 7.52 0.00 45.12 5.12
2797 7690 3.859411 AGGAGAAAGTCTCACATCGAC 57.141 47.619 7.52 0.00 45.12 4.20
2798 7691 4.873746 AAAGGAGAAAGTCTCACATCGA 57.126 40.909 7.52 0.00 45.12 3.59
2799 7692 5.931441 AAAAAGGAGAAAGTCTCACATCG 57.069 39.130 7.52 0.00 45.12 3.84
2818 7711 8.167392 TGGAGGTTTATATGGAGAAGACAAAAA 58.833 33.333 0.00 0.00 0.00 1.94
2819 7712 7.695055 TGGAGGTTTATATGGAGAAGACAAAA 58.305 34.615 0.00 0.00 0.00 2.44
2820 7713 7.265599 TGGAGGTTTATATGGAGAAGACAAA 57.734 36.000 0.00 0.00 0.00 2.83
2821 7714 6.884472 TGGAGGTTTATATGGAGAAGACAA 57.116 37.500 0.00 0.00 0.00 3.18
2822 7715 6.615316 TGATGGAGGTTTATATGGAGAAGACA 59.385 38.462 0.00 0.00 0.00 3.41
2823 7716 7.067496 TGATGGAGGTTTATATGGAGAAGAC 57.933 40.000 0.00 0.00 0.00 3.01
2824 7717 7.878621 ATGATGGAGGTTTATATGGAGAAGA 57.121 36.000 0.00 0.00 0.00 2.87
2837 7730 9.965902 GTGGAATAGAATATAATGATGGAGGTT 57.034 33.333 0.00 0.00 0.00 3.50
2838 7731 8.552296 GGTGGAATAGAATATAATGATGGAGGT 58.448 37.037 0.00 0.00 0.00 3.85
2839 7732 8.776119 AGGTGGAATAGAATATAATGATGGAGG 58.224 37.037 0.00 0.00 0.00 4.30
2853 7746 9.422681 GGATATAGCACTATAGGTGGAATAGAA 57.577 37.037 4.43 0.00 45.44 2.10
2854 7747 8.566109 TGGATATAGCACTATAGGTGGAATAGA 58.434 37.037 4.43 0.00 45.44 1.98
2855 7748 8.768501 TGGATATAGCACTATAGGTGGAATAG 57.231 38.462 4.43 0.00 45.44 1.73
2856 7749 9.147732 CATGGATATAGCACTATAGGTGGAATA 57.852 37.037 4.43 0.00 45.44 1.75
2857 7750 7.071698 CCATGGATATAGCACTATAGGTGGAAT 59.928 40.741 5.56 0.00 45.44 3.01
2858 7751 6.384015 CCATGGATATAGCACTATAGGTGGAA 59.616 42.308 5.56 0.00 45.44 3.53
2859 7752 5.899547 CCATGGATATAGCACTATAGGTGGA 59.100 44.000 5.56 0.00 45.44 4.02
2860 7753 5.453903 GCCATGGATATAGCACTATAGGTGG 60.454 48.000 18.40 8.79 45.44 4.61
2862 7755 5.533112 AGCCATGGATATAGCACTATAGGT 58.467 41.667 18.40 0.00 32.18 3.08
2863 7756 6.286758 CAAGCCATGGATATAGCACTATAGG 58.713 44.000 18.40 0.94 32.18 2.57
2864 7757 5.757320 GCAAGCCATGGATATAGCACTATAG 59.243 44.000 18.40 0.00 32.18 1.31
2865 7758 5.674525 GCAAGCCATGGATATAGCACTATA 58.325 41.667 18.40 0.04 33.09 1.31
2866 7759 4.521146 GCAAGCCATGGATATAGCACTAT 58.479 43.478 18.40 0.00 0.00 2.12
2867 7760 3.617288 CGCAAGCCATGGATATAGCACTA 60.617 47.826 18.40 0.00 0.00 2.74
2868 7761 2.787994 GCAAGCCATGGATATAGCACT 58.212 47.619 18.40 0.00 0.00 4.40
2869 7762 1.466167 CGCAAGCCATGGATATAGCAC 59.534 52.381 18.40 0.00 0.00 4.40
2870 7763 1.812235 CGCAAGCCATGGATATAGCA 58.188 50.000 18.40 0.00 0.00 3.49
2884 7777 3.138296 CGCAATACATGAGCGCAAG 57.862 52.632 11.47 0.00 45.14 4.01
2889 7782 0.940126 CCCTCACGCAATACATGAGC 59.060 55.000 0.00 0.00 37.27 4.26
2890 7783 2.315925 ACCCTCACGCAATACATGAG 57.684 50.000 0.00 0.00 38.35 2.90
2891 7784 2.027653 TCAACCCTCACGCAATACATGA 60.028 45.455 0.00 0.00 0.00 3.07
2892 7785 2.355197 TCAACCCTCACGCAATACATG 58.645 47.619 0.00 0.00 0.00 3.21
2893 7786 2.779755 TCAACCCTCACGCAATACAT 57.220 45.000 0.00 0.00 0.00 2.29
2894 7787 2.552599 TTCAACCCTCACGCAATACA 57.447 45.000 0.00 0.00 0.00 2.29
2895 7788 3.907894 TTTTCAACCCTCACGCAATAC 57.092 42.857 0.00 0.00 0.00 1.89
2896 7789 3.305064 GCTTTTTCAACCCTCACGCAATA 60.305 43.478 0.00 0.00 0.00 1.90
2897 7790 2.545742 GCTTTTTCAACCCTCACGCAAT 60.546 45.455 0.00 0.00 0.00 3.56
2898 7791 1.202359 GCTTTTTCAACCCTCACGCAA 60.202 47.619 0.00 0.00 0.00 4.85
2899 7792 0.383949 GCTTTTTCAACCCTCACGCA 59.616 50.000 0.00 0.00 0.00 5.24
2900 7793 0.668535 AGCTTTTTCAACCCTCACGC 59.331 50.000 0.00 0.00 0.00 5.34
2901 7794 1.946768 TCAGCTTTTTCAACCCTCACG 59.053 47.619 0.00 0.00 0.00 4.35
2902 7795 3.796844 GCTTCAGCTTTTTCAACCCTCAC 60.797 47.826 0.00 0.00 38.21 3.51
2903 7796 2.362077 GCTTCAGCTTTTTCAACCCTCA 59.638 45.455 0.00 0.00 38.21 3.86
2904 7797 2.605580 CGCTTCAGCTTTTTCAACCCTC 60.606 50.000 0.00 0.00 39.32 4.30
2905 7798 1.338020 CGCTTCAGCTTTTTCAACCCT 59.662 47.619 0.00 0.00 39.32 4.34
2906 7799 1.770957 CGCTTCAGCTTTTTCAACCC 58.229 50.000 0.00 0.00 39.32 4.11
2907 7800 1.131771 GCGCTTCAGCTTTTTCAACC 58.868 50.000 0.00 0.00 39.32 3.77
2908 7801 0.772341 CGCGCTTCAGCTTTTTCAAC 59.228 50.000 5.56 0.00 39.32 3.18
2909 7802 0.380378 ACGCGCTTCAGCTTTTTCAA 59.620 45.000 5.73 0.00 39.32 2.69
2910 7803 0.380378 AACGCGCTTCAGCTTTTTCA 59.620 45.000 5.73 0.00 39.32 2.69
2911 7804 2.309898 TAACGCGCTTCAGCTTTTTC 57.690 45.000 5.73 0.00 39.32 2.29
2912 7805 2.766970 TTAACGCGCTTCAGCTTTTT 57.233 40.000 5.73 0.00 39.32 1.94
2913 7806 2.766970 TTTAACGCGCTTCAGCTTTT 57.233 40.000 5.73 0.00 39.32 2.27
2914 7807 2.766970 TTTTAACGCGCTTCAGCTTT 57.233 40.000 5.73 0.00 39.32 3.51
2915 7808 2.766970 TTTTTAACGCGCTTCAGCTT 57.233 40.000 5.73 0.00 39.32 3.74
2931 7824 6.704310 AGCTGAGCAATTGGTTCATATTTTT 58.296 32.000 12.13 0.00 36.07 1.94
2932 7825 6.290294 AGCTGAGCAATTGGTTCATATTTT 57.710 33.333 12.13 0.00 36.07 1.82
2933 7826 5.449588 CGAGCTGAGCAATTGGTTCATATTT 60.450 40.000 12.13 0.00 36.07 1.40
2934 7827 4.036027 CGAGCTGAGCAATTGGTTCATATT 59.964 41.667 12.13 0.00 36.07 1.28
2935 7828 3.562973 CGAGCTGAGCAATTGGTTCATAT 59.437 43.478 12.13 3.44 36.07 1.78
2936 7829 2.938451 CGAGCTGAGCAATTGGTTCATA 59.062 45.455 12.13 0.00 36.07 2.15
2937 7830 1.741706 CGAGCTGAGCAATTGGTTCAT 59.258 47.619 12.13 0.00 36.07 2.57
2938 7831 1.159285 CGAGCTGAGCAATTGGTTCA 58.841 50.000 12.13 10.03 35.29 3.18
2939 7832 1.129437 GACGAGCTGAGCAATTGGTTC 59.871 52.381 12.13 4.35 0.00 3.62
2940 7833 1.160137 GACGAGCTGAGCAATTGGTT 58.840 50.000 12.13 0.00 0.00 3.67
2941 7834 0.035317 TGACGAGCTGAGCAATTGGT 59.965 50.000 10.50 10.50 0.00 3.67
2942 7835 0.725686 CTGACGAGCTGAGCAATTGG 59.274 55.000 7.39 0.00 0.00 3.16
2943 7836 0.096628 GCTGACGAGCTGAGCAATTG 59.903 55.000 7.39 0.00 42.52 2.32
2944 7837 1.357258 CGCTGACGAGCTGAGCAATT 61.357 55.000 7.39 0.00 43.77 2.32
2945 7838 1.808799 CGCTGACGAGCTGAGCAAT 60.809 57.895 7.39 0.00 43.77 3.56
2946 7839 2.431430 CGCTGACGAGCTGAGCAA 60.431 61.111 7.39 0.00 43.77 3.91
2947 7840 4.426112 CCGCTGACGAGCTGAGCA 62.426 66.667 7.39 0.00 43.77 4.26
2949 7842 4.504916 CCCCGCTGACGAGCTGAG 62.505 72.222 0.00 0.00 43.77 3.35
2951 7844 4.379243 AACCCCGCTGACGAGCTG 62.379 66.667 0.00 0.00 43.77 4.24
2952 7845 4.379243 CAACCCCGCTGACGAGCT 62.379 66.667 0.00 0.00 43.77 4.09
2953 7846 4.681978 ACAACCCCGCTGACGAGC 62.682 66.667 0.00 0.00 43.93 5.03
2954 7847 2.738521 CACAACCCCGCTGACGAG 60.739 66.667 0.00 0.00 43.93 4.18
2955 7848 4.980805 GCACAACCCCGCTGACGA 62.981 66.667 0.00 0.00 43.93 4.20
2957 7850 2.672996 ATGCACAACCCCGCTGAC 60.673 61.111 0.00 0.00 0.00 3.51
2958 7851 2.482796 ATCATGCACAACCCCGCTGA 62.483 55.000 0.00 0.00 0.00 4.26
2959 7852 2.048023 ATCATGCACAACCCCGCTG 61.048 57.895 0.00 0.00 0.00 5.18
2960 7853 2.048023 CATCATGCACAACCCCGCT 61.048 57.895 0.00 0.00 0.00 5.52
2961 7854 2.491152 CATCATGCACAACCCCGC 59.509 61.111 0.00 0.00 0.00 6.13
2962 7855 2.417257 CCCATCATGCACAACCCCG 61.417 63.158 0.00 0.00 0.00 5.73
2963 7856 1.000233 TCCCATCATGCACAACCCC 60.000 57.895 0.00 0.00 0.00 4.95
2964 7857 1.669999 GCTCCCATCATGCACAACCC 61.670 60.000 0.00 0.00 0.00 4.11
2965 7858 0.966875 TGCTCCCATCATGCACAACC 60.967 55.000 0.00 0.00 0.00 3.77
2966 7859 1.108776 ATGCTCCCATCATGCACAAC 58.891 50.000 0.00 0.00 39.63 3.32
2967 7860 1.855295 AATGCTCCCATCATGCACAA 58.145 45.000 0.00 0.00 39.63 3.33
2968 7861 1.855295 AAATGCTCCCATCATGCACA 58.145 45.000 0.00 0.00 39.63 4.57
2969 7862 2.093869 ACAAAATGCTCCCATCATGCAC 60.094 45.455 0.00 0.00 39.63 4.57
2970 7863 2.093921 CACAAAATGCTCCCATCATGCA 60.094 45.455 0.00 0.00 41.13 3.96
2971 7864 2.093869 ACACAAAATGCTCCCATCATGC 60.094 45.455 0.00 0.00 0.00 4.06
2972 7865 3.193903 TCACACAAAATGCTCCCATCATG 59.806 43.478 0.00 0.00 0.00 3.07
2973 7866 3.194116 GTCACACAAAATGCTCCCATCAT 59.806 43.478 0.00 0.00 0.00 2.45
2974 7867 2.557924 GTCACACAAAATGCTCCCATCA 59.442 45.455 0.00 0.00 0.00 3.07
2975 7868 2.414559 CGTCACACAAAATGCTCCCATC 60.415 50.000 0.00 0.00 0.00 3.51
2976 7869 1.541147 CGTCACACAAAATGCTCCCAT 59.459 47.619 0.00 0.00 0.00 4.00
2977 7870 0.950836 CGTCACACAAAATGCTCCCA 59.049 50.000 0.00 0.00 0.00 4.37
2978 7871 1.234821 TCGTCACACAAAATGCTCCC 58.765 50.000 0.00 0.00 0.00 4.30
2979 7872 3.347958 TTTCGTCACACAAAATGCTCC 57.652 42.857 0.00 0.00 0.00 4.70
2980 7873 4.975502 TCATTTTCGTCACACAAAATGCTC 59.024 37.500 13.72 0.00 44.45 4.26
2981 7874 4.930963 TCATTTTCGTCACACAAAATGCT 58.069 34.783 13.72 0.00 44.45 3.79
2982 7875 5.633996 TTCATTTTCGTCACACAAAATGC 57.366 34.783 13.72 0.00 44.45 3.56
2983 7876 5.231779 TGCTTCATTTTCGTCACACAAAATG 59.768 36.000 12.81 12.81 45.44 2.32
2984 7877 5.347342 TGCTTCATTTTCGTCACACAAAAT 58.653 33.333 0.00 0.00 33.37 1.82
2985 7878 4.738124 TGCTTCATTTTCGTCACACAAAA 58.262 34.783 0.00 0.00 0.00 2.44
2986 7879 4.362932 TGCTTCATTTTCGTCACACAAA 57.637 36.364 0.00 0.00 0.00 2.83
2987 7880 4.289342 CATGCTTCATTTTCGTCACACAA 58.711 39.130 0.00 0.00 0.00 3.33
2988 7881 3.304592 CCATGCTTCATTTTCGTCACACA 60.305 43.478 0.00 0.00 0.00 3.72
2989 7882 3.236816 CCATGCTTCATTTTCGTCACAC 58.763 45.455 0.00 0.00 0.00 3.82
2990 7883 2.351641 GCCATGCTTCATTTTCGTCACA 60.352 45.455 0.00 0.00 0.00 3.58
2991 7884 2.253603 GCCATGCTTCATTTTCGTCAC 58.746 47.619 0.00 0.00 0.00 3.67
2992 7885 1.202114 GGCCATGCTTCATTTTCGTCA 59.798 47.619 0.00 0.00 0.00 4.35
2993 7886 1.913317 GGCCATGCTTCATTTTCGTC 58.087 50.000 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.