Multiple sequence alignment - TraesCS7B01G050000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G050000 chr7B 100.000 4727 0 0 373 5099 51066634 51061908 0.000000e+00 8730.0
1 TraesCS7B01G050000 chr7B 100.000 30 0 0 1 30 51067006 51066977 7.130000e-04 56.5
2 TraesCS7B01G050000 chr7A 92.913 3570 160 32 843 4384 99677894 99674390 0.000000e+00 5105.0
3 TraesCS7B01G050000 chr7A 96.914 713 21 1 4387 5099 706120015 706119304 0.000000e+00 1194.0
4 TraesCS7B01G050000 chr7A 90.681 279 15 5 548 819 99678488 99678214 1.350000e-95 361.0
5 TraesCS7B01G050000 chr7A 91.089 101 7 2 411 509 470913879 470913779 8.910000e-28 135.0
6 TraesCS7B01G050000 chrUn 97.490 717 16 2 4385 5099 31721388 31720672 0.000000e+00 1223.0
7 TraesCS7B01G050000 chrUn 89.423 104 5 6 408 509 316544987 316545086 5.360000e-25 126.0
8 TraesCS7B01G050000 chr1B 97.218 719 18 2 4383 5099 279907077 279906359 0.000000e+00 1216.0
9 TraesCS7B01G050000 chr6A 97.071 717 17 2 4384 5099 85580220 85580933 0.000000e+00 1205.0
10 TraesCS7B01G050000 chr1A 96.923 715 22 0 4385 5099 586503204 586503918 0.000000e+00 1199.0
11 TraesCS7B01G050000 chr1A 90.385 104 8 2 408 509 13740497 13740600 8.910000e-28 135.0
12 TraesCS7B01G050000 chr5A 96.671 721 23 1 4380 5099 40156164 40156884 0.000000e+00 1197.0
13 TraesCS7B01G050000 chr2B 96.914 713 21 1 4388 5099 693229890 693229178 0.000000e+00 1194.0
14 TraesCS7B01G050000 chr2B 91.429 105 6 3 411 512 422993248 422993144 1.910000e-29 141.0
15 TraesCS7B01G050000 chr2B 91.346 104 7 2 408 509 527581452 527581555 1.910000e-29 141.0
16 TraesCS7B01G050000 chr2B 87.037 108 8 3 408 509 649947909 649948016 3.230000e-22 117.0
17 TraesCS7B01G050000 chr3B 96.653 717 22 2 4385 5099 662488542 662487826 0.000000e+00 1190.0
18 TraesCS7B01G050000 chr3A 96.653 717 22 2 4383 5099 36275428 36274714 0.000000e+00 1190.0
19 TraesCS7B01G050000 chr3A 90.291 103 6 3 411 509 614706150 614706048 1.150000e-26 132.0
20 TraesCS7B01G050000 chr4D 90.000 100 8 2 411 509 20375768 20375670 1.490000e-25 128.0
21 TraesCS7B01G050000 chr3D 89.109 101 8 3 411 509 295043758 295043659 6.930000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G050000 chr7B 51061908 51067006 5098 True 4393.25 8730 100.000 1 5099 2 chr7B.!!$R1 5098
1 TraesCS7B01G050000 chr7A 99674390 99678488 4098 True 2733.00 5105 91.797 548 4384 2 chr7A.!!$R3 3836
2 TraesCS7B01G050000 chr7A 706119304 706120015 711 True 1194.00 1194 96.914 4387 5099 1 chr7A.!!$R2 712
3 TraesCS7B01G050000 chrUn 31720672 31721388 716 True 1223.00 1223 97.490 4385 5099 1 chrUn.!!$R1 714
4 TraesCS7B01G050000 chr1B 279906359 279907077 718 True 1216.00 1216 97.218 4383 5099 1 chr1B.!!$R1 716
5 TraesCS7B01G050000 chr6A 85580220 85580933 713 False 1205.00 1205 97.071 4384 5099 1 chr6A.!!$F1 715
6 TraesCS7B01G050000 chr1A 586503204 586503918 714 False 1199.00 1199 96.923 4385 5099 1 chr1A.!!$F2 714
7 TraesCS7B01G050000 chr5A 40156164 40156884 720 False 1197.00 1197 96.671 4380 5099 1 chr5A.!!$F1 719
8 TraesCS7B01G050000 chr2B 693229178 693229890 712 True 1194.00 1194 96.914 4388 5099 1 chr2B.!!$R2 711
9 TraesCS7B01G050000 chr3B 662487826 662488542 716 True 1190.00 1190 96.653 4385 5099 1 chr3B.!!$R1 714
10 TraesCS7B01G050000 chr3A 36274714 36275428 714 True 1190.00 1190 96.653 4383 5099 1 chr3A.!!$R1 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
727 729 0.032678 CTCGACAGCTGTTCACCTGT 59.967 55.000 22.65 0.0 44.43 4.00 F
827 846 0.106167 TCTTCGTCCCCATCCGAGAT 60.106 55.000 0.00 0.0 34.16 2.75 F
1938 2262 0.332293 ACATGTGCCCATCATGACCA 59.668 50.000 11.92 0.0 43.47 4.02 F
2350 2677 0.536460 ATTTGGCGACGACCCACTTT 60.536 50.000 0.00 0.0 30.65 2.66 F
3654 3982 1.204941 ACAAAGATCTACGAGCCGCTT 59.795 47.619 0.00 0.0 0.00 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2026 2353 0.329596 AAATGTGCCAGGAGAGGGTC 59.670 55.0 0.00 0.0 0.00 4.46 R
2595 2922 0.398318 ACAGACCAGAGAGCAAACCC 59.602 55.0 0.00 0.0 0.00 4.11 R
2793 3120 0.671781 ACGCTGCCTGCTACAAGAAG 60.672 55.0 0.00 0.0 40.11 2.85 R
4068 4397 1.019673 CCCTTCCATGCTGATGAACG 58.980 55.0 0.00 0.0 0.00 3.95 R
4537 4869 0.531532 CAGCTAGCACCCCTTCATCG 60.532 60.0 18.83 0.0 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.636820 TGTATGGGGTAGTGGCGG 58.363 61.111 0.00 0.00 0.00 6.13
18 19 1.001888 TGTATGGGGTAGTGGCGGA 59.998 57.895 0.00 0.00 0.00 5.54
19 20 1.046472 TGTATGGGGTAGTGGCGGAG 61.046 60.000 0.00 0.00 0.00 4.63
389 390 3.069778 GGGGGCGAGGGCTATTAG 58.930 66.667 0.00 0.00 39.81 1.73
390 391 1.535687 GGGGGCGAGGGCTATTAGA 60.536 63.158 0.00 0.00 39.81 2.10
391 392 1.125711 GGGGGCGAGGGCTATTAGAA 61.126 60.000 0.00 0.00 39.81 2.10
392 393 0.035036 GGGGCGAGGGCTATTAGAAC 59.965 60.000 0.00 0.00 39.81 3.01
393 394 0.756903 GGGCGAGGGCTATTAGAACA 59.243 55.000 0.00 0.00 39.81 3.18
394 395 1.270358 GGGCGAGGGCTATTAGAACAG 60.270 57.143 0.00 0.00 39.81 3.16
395 396 1.270358 GGCGAGGGCTATTAGAACAGG 60.270 57.143 0.00 0.00 39.81 4.00
396 397 1.413077 GCGAGGGCTATTAGAACAGGT 59.587 52.381 0.00 0.00 35.83 4.00
397 398 2.158943 GCGAGGGCTATTAGAACAGGTT 60.159 50.000 0.00 0.00 35.83 3.50
398 399 3.458189 CGAGGGCTATTAGAACAGGTTG 58.542 50.000 0.00 0.00 0.00 3.77
399 400 3.741388 CGAGGGCTATTAGAACAGGTTGG 60.741 52.174 0.00 0.00 0.00 3.77
400 401 2.509964 AGGGCTATTAGAACAGGTTGGG 59.490 50.000 0.00 0.00 0.00 4.12
401 402 2.508300 GGGCTATTAGAACAGGTTGGGA 59.492 50.000 0.00 0.00 0.00 4.37
402 403 3.053917 GGGCTATTAGAACAGGTTGGGAA 60.054 47.826 0.00 0.00 0.00 3.97
403 404 4.200092 GGCTATTAGAACAGGTTGGGAAG 58.800 47.826 0.00 0.00 0.00 3.46
404 405 4.200092 GCTATTAGAACAGGTTGGGAAGG 58.800 47.826 0.00 0.00 0.00 3.46
405 406 3.739401 ATTAGAACAGGTTGGGAAGGG 57.261 47.619 0.00 0.00 0.00 3.95
406 407 0.696501 TAGAACAGGTTGGGAAGGGC 59.303 55.000 0.00 0.00 0.00 5.19
407 408 1.606601 GAACAGGTTGGGAAGGGCC 60.607 63.158 0.00 0.00 0.00 5.80
408 409 2.366153 GAACAGGTTGGGAAGGGCCA 62.366 60.000 6.18 0.00 38.95 5.36
409 410 1.955458 AACAGGTTGGGAAGGGCCAA 61.955 55.000 6.18 0.00 38.95 4.52
410 411 1.908299 CAGGTTGGGAAGGGCCAAC 60.908 63.158 6.18 0.00 43.64 3.77
411 412 2.200092 GGTTGGGAAGGGCCAACA 59.800 61.111 6.18 0.00 45.44 3.33
412 413 1.458588 GGTTGGGAAGGGCCAACAA 60.459 57.895 6.18 1.89 45.44 2.83
413 414 1.051556 GGTTGGGAAGGGCCAACAAA 61.052 55.000 6.18 0.00 45.44 2.83
414 415 0.833949 GTTGGGAAGGGCCAACAAAA 59.166 50.000 6.18 0.00 43.77 2.44
415 416 1.419762 GTTGGGAAGGGCCAACAAAAT 59.580 47.619 6.18 0.00 43.77 1.82
416 417 2.635427 GTTGGGAAGGGCCAACAAAATA 59.365 45.455 6.18 0.00 43.77 1.40
417 418 2.252714 TGGGAAGGGCCAACAAAATAC 58.747 47.619 6.18 0.00 38.95 1.89
418 419 2.158234 TGGGAAGGGCCAACAAAATACT 60.158 45.455 6.18 0.00 38.95 2.12
419 420 2.496070 GGGAAGGGCCAACAAAATACTC 59.504 50.000 6.18 0.00 38.95 2.59
420 421 3.161866 GGAAGGGCCAACAAAATACTCA 58.838 45.455 6.18 0.00 36.34 3.41
421 422 3.769300 GGAAGGGCCAACAAAATACTCAT 59.231 43.478 6.18 0.00 36.34 2.90
422 423 4.222810 GGAAGGGCCAACAAAATACTCATT 59.777 41.667 6.18 0.00 36.34 2.57
423 424 5.420739 GGAAGGGCCAACAAAATACTCATTA 59.579 40.000 6.18 0.00 36.34 1.90
424 425 6.071051 GGAAGGGCCAACAAAATACTCATTAA 60.071 38.462 6.18 0.00 36.34 1.40
425 426 7.364673 GGAAGGGCCAACAAAATACTCATTAAT 60.365 37.037 6.18 0.00 36.34 1.40
426 427 7.494922 AGGGCCAACAAAATACTCATTAATT 57.505 32.000 6.18 0.00 0.00 1.40
427 428 7.330262 AGGGCCAACAAAATACTCATTAATTG 58.670 34.615 6.18 0.00 0.00 2.32
428 429 7.038373 AGGGCCAACAAAATACTCATTAATTGT 60.038 33.333 6.18 0.00 32.78 2.71
429 430 7.064490 GGGCCAACAAAATACTCATTAATTGTG 59.936 37.037 4.39 0.00 31.90 3.33
430 431 7.412891 GGCCAACAAAATACTCATTAATTGTGC 60.413 37.037 0.00 0.00 31.90 4.57
431 432 7.117523 GCCAACAAAATACTCATTAATTGTGCA 59.882 33.333 0.00 0.00 31.90 4.57
432 433 9.153721 CCAACAAAATACTCATTAATTGTGCAT 57.846 29.630 0.00 0.00 31.90 3.96
435 436 9.709495 ACAAAATACTCATTAATTGTGCATTGT 57.291 25.926 0.00 0.06 30.46 2.71
438 439 9.926158 AAATACTCATTAATTGTGCATTGTTCA 57.074 25.926 0.00 0.00 0.00 3.18
442 443 9.577110 ACTCATTAATTGTGCATTGTTCATTAG 57.423 29.630 0.00 0.00 0.00 1.73
443 444 9.791820 CTCATTAATTGTGCATTGTTCATTAGA 57.208 29.630 0.00 0.00 0.00 2.10
451 452 9.734620 TTGTGCATTGTTCATTAGATAATTAGC 57.265 29.630 0.00 0.00 0.00 3.09
452 453 8.901793 TGTGCATTGTTCATTAGATAATTAGCA 58.098 29.630 3.17 0.00 0.00 3.49
453 454 9.390795 GTGCATTGTTCATTAGATAATTAGCAG 57.609 33.333 3.17 0.00 0.00 4.24
454 455 8.077991 TGCATTGTTCATTAGATAATTAGCAGC 58.922 33.333 3.17 0.00 0.00 5.25
455 456 8.077991 GCATTGTTCATTAGATAATTAGCAGCA 58.922 33.333 3.17 0.00 0.00 4.41
456 457 9.955208 CATTGTTCATTAGATAATTAGCAGCAA 57.045 29.630 3.17 0.00 0.00 3.91
467 468 9.736414 AGATAATTAGCAGCAAATATGAGATGT 57.264 29.630 3.17 0.00 0.00 3.06
471 472 7.734924 TTAGCAGCAAATATGAGATGTTAGG 57.265 36.000 0.00 0.00 0.00 2.69
472 473 5.068636 AGCAGCAAATATGAGATGTTAGGG 58.931 41.667 0.00 0.00 0.00 3.53
473 474 4.217118 GCAGCAAATATGAGATGTTAGGGG 59.783 45.833 0.00 0.00 0.00 4.79
474 475 5.624159 CAGCAAATATGAGATGTTAGGGGA 58.376 41.667 0.00 0.00 0.00 4.81
475 476 5.704515 CAGCAAATATGAGATGTTAGGGGAG 59.295 44.000 0.00 0.00 0.00 4.30
476 477 5.006386 GCAAATATGAGATGTTAGGGGAGG 58.994 45.833 0.00 0.00 0.00 4.30
477 478 4.917906 AATATGAGATGTTAGGGGAGGC 57.082 45.455 0.00 0.00 0.00 4.70
478 479 1.439543 ATGAGATGTTAGGGGAGGCC 58.560 55.000 0.00 0.00 0.00 5.19
479 480 0.044092 TGAGATGTTAGGGGAGGCCA 59.956 55.000 5.01 0.00 0.00 5.36
480 481 0.761802 GAGATGTTAGGGGAGGCCAG 59.238 60.000 5.01 0.00 0.00 4.85
481 482 0.695803 AGATGTTAGGGGAGGCCAGG 60.696 60.000 5.01 0.00 0.00 4.45
482 483 2.344878 GATGTTAGGGGAGGCCAGGC 62.345 65.000 5.01 1.26 0.00 4.85
523 524 3.498071 CACCGGTATGGGGGCCAT 61.498 66.667 6.87 0.00 46.99 4.40
524 525 2.698406 ACCGGTATGGGGGCCATT 60.698 61.111 4.49 0.00 42.23 3.16
525 526 2.321357 ACCGGTATGGGGGCCATTT 61.321 57.895 4.49 0.00 42.23 2.32
526 527 1.075600 CCGGTATGGGGGCCATTTT 60.076 57.895 4.39 0.00 42.23 1.82
527 528 1.112916 CCGGTATGGGGGCCATTTTC 61.113 60.000 4.39 0.00 42.23 2.29
528 529 0.106217 CGGTATGGGGGCCATTTTCT 60.106 55.000 4.39 0.00 42.23 2.52
529 530 1.687996 CGGTATGGGGGCCATTTTCTT 60.688 52.381 4.39 0.00 42.23 2.52
530 531 2.477245 GGTATGGGGGCCATTTTCTTT 58.523 47.619 4.39 0.00 42.23 2.52
531 532 2.434336 GGTATGGGGGCCATTTTCTTTC 59.566 50.000 4.39 0.00 42.23 2.62
532 533 2.647846 ATGGGGGCCATTTTCTTTCT 57.352 45.000 4.39 0.00 42.23 2.52
533 534 3.774842 ATGGGGGCCATTTTCTTTCTA 57.225 42.857 4.39 0.00 42.23 2.10
534 535 3.774842 TGGGGGCCATTTTCTTTCTAT 57.225 42.857 4.39 0.00 0.00 1.98
535 536 4.890499 TGGGGGCCATTTTCTTTCTATA 57.110 40.909 4.39 0.00 0.00 1.31
536 537 5.417170 TGGGGGCCATTTTCTTTCTATAT 57.583 39.130 4.39 0.00 0.00 0.86
537 538 6.538209 TGGGGGCCATTTTCTTTCTATATA 57.462 37.500 4.39 0.00 0.00 0.86
538 539 6.311735 TGGGGGCCATTTTCTTTCTATATAC 58.688 40.000 4.39 0.00 0.00 1.47
539 540 6.104094 TGGGGGCCATTTTCTTTCTATATACT 59.896 38.462 4.39 0.00 0.00 2.12
540 541 6.434340 GGGGGCCATTTTCTTTCTATATACTG 59.566 42.308 4.39 0.00 0.00 2.74
541 542 6.071896 GGGGCCATTTTCTTTCTATATACTGC 60.072 42.308 4.39 0.00 0.00 4.40
542 543 6.071896 GGGCCATTTTCTTTCTATATACTGCC 60.072 42.308 4.39 0.00 0.00 4.85
543 544 6.071896 GGCCATTTTCTTTCTATATACTGCCC 60.072 42.308 0.00 0.00 0.00 5.36
544 545 6.490040 GCCATTTTCTTTCTATATACTGCCCA 59.510 38.462 0.00 0.00 0.00 5.36
545 546 7.014230 GCCATTTTCTTTCTATATACTGCCCAA 59.986 37.037 0.00 0.00 0.00 4.12
546 547 8.571336 CCATTTTCTTTCTATATACTGCCCAAG 58.429 37.037 0.00 0.00 0.00 3.61
551 552 4.351874 TCTATATACTGCCCAAGGTTGC 57.648 45.455 0.00 0.00 0.00 4.17
596 597 0.469892 CTGCAAGGAAAACCCCACCT 60.470 55.000 0.00 0.00 34.66 4.00
597 598 0.469144 TGCAAGGAAAACCCCACCTC 60.469 55.000 0.00 0.00 34.66 3.85
605 606 2.375014 AAACCCCACCTCGTTCAAAT 57.625 45.000 0.00 0.00 0.00 2.32
630 631 0.667993 CAAACTTGGAGCTTCGCCAA 59.332 50.000 5.34 5.34 40.75 4.52
654 656 4.388499 AACGGGAAGCGATGGCGT 62.388 61.111 0.00 0.00 46.35 5.68
662 664 0.602638 AAGCGATGGCGTGAAGACAA 60.603 50.000 0.00 0.00 44.01 3.18
676 678 1.343069 AGACAAGGAAAGGAGCTCGT 58.657 50.000 7.83 5.12 0.00 4.18
680 682 2.158813 ACAAGGAAAGGAGCTCGTCAAA 60.159 45.455 9.78 0.00 0.00 2.69
691 693 2.093973 AGCTCGTCAAATCAACCTCGAT 60.094 45.455 0.00 0.00 0.00 3.59
696 698 2.352960 GTCAAATCAACCTCGATCAGCC 59.647 50.000 0.00 0.00 0.00 4.85
727 729 0.032678 CTCGACAGCTGTTCACCTGT 59.967 55.000 22.65 0.00 44.43 4.00
752 754 2.125326 TATCTGGTGGGACCGCGAG 61.125 63.158 8.23 7.51 42.58 5.03
797 805 2.203806 TGGATCACCACCGCGATAA 58.796 52.632 8.23 0.00 41.77 1.75
814 822 4.671766 GCGATAATTTGCAAACCTCTTCGT 60.672 41.667 15.41 0.00 32.00 3.85
818 826 0.536460 TTGCAAACCTCTTCGTCCCC 60.536 55.000 0.00 0.00 0.00 4.81
827 846 0.106167 TCTTCGTCCCCATCCGAGAT 60.106 55.000 0.00 0.00 34.16 2.75
835 854 0.755079 CCCATCCGAGATGCAGAGAA 59.245 55.000 8.01 0.00 0.00 2.87
838 857 2.102084 CCATCCGAGATGCAGAGAAAGA 59.898 50.000 8.01 0.00 0.00 2.52
854 873 6.253298 CAGAGAAAGAAGAGAACGATCACATC 59.747 42.308 0.00 0.00 0.00 3.06
860 1163 5.359576 AGAAGAGAACGATCACATCTTAGCT 59.640 40.000 0.00 0.00 30.62 3.32
927 1230 1.064979 AGAACAAAAGGACGTGTGGGT 60.065 47.619 0.00 0.00 0.00 4.51
929 1232 1.358759 CAAAAGGACGTGTGGGTGC 59.641 57.895 0.00 0.00 0.00 5.01
943 1246 2.320044 GTGCGCGATCTTAACGGC 59.680 61.111 12.10 0.00 0.00 5.68
1106 1409 2.583593 GCTCTACGCGGCCTTCAG 60.584 66.667 12.47 0.00 0.00 3.02
1251 1554 3.411351 CAGGTGCGTGCGTGTACC 61.411 66.667 7.10 7.10 0.00 3.34
1283 1586 1.624323 CGCGTTCGATTTCTCGTCC 59.376 57.895 0.00 0.00 45.25 4.79
1284 1587 1.740043 CGCGTTCGATTTCTCGTCCC 61.740 60.000 0.00 0.00 45.25 4.46
1303 1606 2.956964 CGCATCCTCTCCGCGTTC 60.957 66.667 4.92 0.00 43.86 3.95
1304 1607 2.956964 GCATCCTCTCCGCGTTCG 60.957 66.667 4.92 0.00 0.00 3.95
1305 1608 2.956964 CATCCTCTCCGCGTTCGC 60.957 66.667 4.92 7.14 0.00 4.70
1306 1609 4.208686 ATCCTCTCCGCGTTCGCC 62.209 66.667 4.92 0.00 0.00 5.54
1309 1612 4.856607 CTCTCCGCGTTCGCCCTC 62.857 72.222 4.92 0.00 0.00 4.30
1318 1621 1.296056 CGTTCGCCCTCCGATTTGTT 61.296 55.000 0.00 0.00 46.81 2.83
1409 1720 1.269166 CATCCTGTTCGTAGCGTGTC 58.731 55.000 0.00 0.00 0.00 3.67
1523 1841 2.666022 TCGTGTTCGTGATGCTGTTATG 59.334 45.455 0.00 0.00 38.33 1.90
1524 1842 2.774007 GTGTTCGTGATGCTGTTATGC 58.226 47.619 0.00 0.00 0.00 3.14
1526 1844 2.810852 TGTTCGTGATGCTGTTATGCAA 59.189 40.909 0.00 0.00 46.61 4.08
1527 1845 3.251972 TGTTCGTGATGCTGTTATGCAAA 59.748 39.130 0.00 0.00 46.61 3.68
1528 1846 4.225984 GTTCGTGATGCTGTTATGCAAAA 58.774 39.130 0.00 0.00 46.61 2.44
1529 1847 4.700268 TCGTGATGCTGTTATGCAAAAT 57.300 36.364 0.00 0.00 46.61 1.82
1530 1848 4.413969 TCGTGATGCTGTTATGCAAAATG 58.586 39.130 0.00 0.00 46.61 2.32
1531 1849 3.000476 CGTGATGCTGTTATGCAAAATGC 60.000 43.478 0.00 0.00 46.61 3.56
1542 1860 2.520686 GCAAAATGCAATGCTGAAGC 57.479 45.000 6.82 0.61 44.26 3.86
1543 1861 2.073816 GCAAAATGCAATGCTGAAGCT 58.926 42.857 6.82 0.00 44.26 3.74
1544 1862 2.159707 GCAAAATGCAATGCTGAAGCTG 60.160 45.455 6.82 0.00 44.26 4.24
1545 1863 3.064207 CAAAATGCAATGCTGAAGCTGT 58.936 40.909 6.82 0.00 42.66 4.40
1546 1864 3.396260 AAATGCAATGCTGAAGCTGTT 57.604 38.095 6.82 0.00 42.66 3.16
1547 1865 4.524316 AAATGCAATGCTGAAGCTGTTA 57.476 36.364 6.82 0.00 42.66 2.41
1548 1866 4.730949 AATGCAATGCTGAAGCTGTTAT 57.269 36.364 6.82 0.00 42.66 1.89
1632 1950 6.200100 CAAGCATCTCTGTGAAATTCATAGC 58.800 40.000 13.86 4.21 35.84 2.97
1643 1961 8.309163 TGTGAAATTCATAGCATTTGGAAAAC 57.691 30.769 0.00 0.00 0.00 2.43
1658 1976 9.492973 CATTTGGAAAACTTTATTCATCCTTGT 57.507 29.630 0.00 0.00 0.00 3.16
1661 1979 9.974980 TTGGAAAACTTTATTCATCCTTGTTAC 57.025 29.630 0.00 0.00 0.00 2.50
1686 2004 4.825634 AGTTGTTAACTAAAAGGGGCTCAC 59.174 41.667 7.22 0.00 40.69 3.51
1697 2015 1.627834 AGGGGCTCACTGAGAAAGAAG 59.372 52.381 10.45 0.00 0.00 2.85
1698 2016 1.447945 GGGCTCACTGAGAAAGAAGC 58.552 55.000 10.45 0.00 37.44 3.86
1699 2017 1.447945 GGCTCACTGAGAAAGAAGCC 58.552 55.000 10.45 0.00 44.95 4.35
1700 2018 2.175878 GCTCACTGAGAAAGAAGCCA 57.824 50.000 10.45 0.00 34.30 4.75
1701 2019 2.498167 GCTCACTGAGAAAGAAGCCAA 58.502 47.619 10.45 0.00 34.30 4.52
1702 2020 2.483491 GCTCACTGAGAAAGAAGCCAAG 59.517 50.000 10.45 0.00 34.30 3.61
1703 2021 3.805108 GCTCACTGAGAAAGAAGCCAAGA 60.805 47.826 10.45 0.00 34.30 3.02
1704 2022 4.384056 CTCACTGAGAAAGAAGCCAAGAA 58.616 43.478 0.00 0.00 0.00 2.52
1741 2059 5.375417 TTGATGTGGATTTGCTTACTGTG 57.625 39.130 0.00 0.00 0.00 3.66
1767 2090 2.320587 GCTGTGCTCGTTGGAGGTG 61.321 63.158 0.00 0.00 40.80 4.00
1783 2106 2.743538 TGACTGCCTGCACGATGC 60.744 61.111 0.00 0.00 45.29 3.91
1796 2119 0.745845 ACGATGCCACTGATTCTGCC 60.746 55.000 0.00 0.00 0.00 4.85
1812 2135 1.076485 GCCCAATCAGGTGATGGCT 60.076 57.895 12.10 0.00 39.31 4.75
1817 2140 3.559069 CCAATCAGGTGATGGCTTACAT 58.441 45.455 0.00 0.00 44.18 2.29
1831 2154 7.938490 TGATGGCTTACATATTTGCAGATCTAA 59.062 33.333 0.00 0.00 40.72 2.10
1851 2174 8.830915 ATCTAAGACTGGTATCCGATGATAAT 57.169 34.615 0.00 0.00 35.28 1.28
1852 2175 8.282455 TCTAAGACTGGTATCCGATGATAATC 57.718 38.462 0.00 0.00 35.28 1.75
1886 2209 3.199946 GTCATTGGACTTACCTGGGATGA 59.800 47.826 0.00 0.00 40.99 2.92
1887 2210 4.047166 TCATTGGACTTACCTGGGATGAT 58.953 43.478 0.00 0.00 39.86 2.45
1888 2211 3.931907 TTGGACTTACCTGGGATGATG 57.068 47.619 0.00 0.00 39.86 3.07
1889 2212 2.126882 TGGACTTACCTGGGATGATGG 58.873 52.381 0.00 0.00 39.86 3.51
1890 2213 1.421646 GGACTTACCTGGGATGATGGG 59.578 57.143 0.00 0.00 35.41 4.00
1905 2228 2.570365 TGGGACATGCAACATGCTC 58.430 52.632 7.46 4.95 45.31 4.26
1938 2262 0.332293 ACATGTGCCCATCATGACCA 59.668 50.000 11.92 0.00 43.47 4.02
1939 2263 1.272592 ACATGTGCCCATCATGACCAA 60.273 47.619 11.92 0.00 43.47 3.67
1940 2264 2.036387 CATGTGCCCATCATGACCAAT 58.964 47.619 0.00 0.00 43.47 3.16
1941 2265 3.224269 CATGTGCCCATCATGACCAATA 58.776 45.455 0.00 0.00 43.47 1.90
1942 2266 3.378861 TGTGCCCATCATGACCAATAA 57.621 42.857 0.00 0.00 0.00 1.40
1948 2272 5.079643 GCCCATCATGACCAATAATAACCT 58.920 41.667 0.00 0.00 0.00 3.50
1957 2281 7.194112 TGACCAATAATAACCTGACTCATGA 57.806 36.000 0.00 0.00 0.00 3.07
1978 2305 5.297547 TGACCATCGATTAGTTAATCCAGC 58.702 41.667 0.00 0.00 39.04 4.85
1982 2309 5.573282 CCATCGATTAGTTAATCCAGCGTAG 59.427 44.000 0.00 0.00 39.04 3.51
1984 2311 5.755813 TCGATTAGTTAATCCAGCGTAGTC 58.244 41.667 6.35 0.00 39.04 2.59
1995 2322 3.128764 TCCAGCGTAGTCTGTTCACATAG 59.871 47.826 0.00 0.00 31.55 2.23
2026 2353 6.062434 ACGAATTAGTCTGATTCTCTACCG 57.938 41.667 13.70 4.64 32.60 4.02
2032 2359 2.619646 GTCTGATTCTCTACCGACCCTC 59.380 54.545 0.00 0.00 0.00 4.30
2066 2393 8.659527 ACATTTTATTTTCCAACCATCCTTTCT 58.340 29.630 0.00 0.00 0.00 2.52
2108 2435 6.119240 TCTTGATCTCAAAGGAAGTGACAT 57.881 37.500 0.00 0.00 35.15 3.06
2136 2463 6.563422 TCTATTTTCATATGCTTTGTGTGGC 58.437 36.000 0.00 0.00 0.00 5.01
2139 2466 3.643199 TCATATGCTTTGTGTGGCCTA 57.357 42.857 3.32 0.00 0.00 3.93
2241 2568 6.909550 TTCTAGCAATGTATTGTGGGTTTT 57.090 33.333 6.48 0.00 39.88 2.43
2290 2617 9.294030 GTATTTTTATGAAGATGGAAAGCACAG 57.706 33.333 0.00 0.00 0.00 3.66
2350 2677 0.536460 ATTTGGCGACGACCCACTTT 60.536 50.000 0.00 0.00 30.65 2.66
2368 2695 6.149633 CCACTTTGGCAAAATGTAAGTACTC 58.850 40.000 18.75 0.00 0.00 2.59
2438 2765 2.094762 AGCACACCGTTCTCCATTAC 57.905 50.000 0.00 0.00 0.00 1.89
2445 2772 4.464951 ACACCGTTCTCCATTACTGATGTA 59.535 41.667 0.00 0.00 33.71 2.29
2455 2782 7.606839 TCTCCATTACTGATGTAGTAGGTATCG 59.393 40.741 0.00 0.00 42.57 2.92
2609 2936 2.744494 GCTCATAGGGTTTGCTCTCTGG 60.744 54.545 0.00 0.00 0.00 3.86
2611 2938 2.501723 TCATAGGGTTTGCTCTCTGGTC 59.498 50.000 0.00 0.00 0.00 4.02
2637 2964 7.153315 TGTGTGCATTGTATGACATGAAAATT 58.847 30.769 0.00 0.00 0.00 1.82
2691 3018 7.178274 TCACATGGGCAGATTGTTAGTAATTTT 59.822 33.333 0.00 0.00 0.00 1.82
2745 3072 4.647424 TCTGGAAATTGTTGGTGTTGAC 57.353 40.909 0.00 0.00 0.00 3.18
2774 3101 9.128715 AGGGCCTCTTGAGGTATTATATTTTAT 57.871 33.333 16.95 0.00 0.00 1.40
2809 3136 2.771089 TGAACTTCTTGTAGCAGGCAG 58.229 47.619 0.00 0.00 0.00 4.85
2828 3155 3.665323 GCAGCGTATCTGACAAACAACAG 60.665 47.826 0.00 0.00 45.72 3.16
2866 3193 7.059202 TGAGTATGTGATTATGTCAGCATCT 57.941 36.000 0.00 0.00 37.56 2.90
3000 3327 8.242739 GGCACAATATGGTTGCAATTTAAATTT 58.757 29.630 10.77 0.00 0.00 1.82
3001 3328 9.276397 GCACAATATGGTTGCAATTTAAATTTC 57.724 29.630 10.77 7.14 0.00 2.17
3170 3497 1.959899 CTGGAGCAAACACTAGCGCG 61.960 60.000 0.00 0.00 35.48 6.86
3234 3561 5.873732 TGCCTGTTTAACAATTGTTTTTGC 58.126 33.333 27.66 20.01 39.31 3.68
3271 3598 8.659925 AAGAAATGATTCTAGTCTATGCACTG 57.340 34.615 0.00 0.00 45.19 3.66
3277 3604 3.708451 TCTAGTCTATGCACTGGTTCCA 58.292 45.455 0.00 0.00 0.00 3.53
3278 3605 4.093743 TCTAGTCTATGCACTGGTTCCAA 58.906 43.478 0.00 0.00 0.00 3.53
3304 3631 2.866156 TCGTATGAGCTGCATTGCTAAC 59.134 45.455 10.49 0.00 44.17 2.34
3326 3653 4.823989 ACCTGTCTTCATGTTCTGGAAAAG 59.176 41.667 0.00 0.00 0.00 2.27
3344 3671 9.569167 CTGGAAAAGCAATGCATATATATTCTG 57.431 33.333 8.35 0.00 0.00 3.02
3363 3690 3.261643 TCTGCATGAGTGGACTGTGTAAT 59.738 43.478 0.00 0.00 0.00 1.89
3364 3691 4.466015 TCTGCATGAGTGGACTGTGTAATA 59.534 41.667 0.00 0.00 0.00 0.98
3367 3694 4.568359 GCATGAGTGGACTGTGTAATAGTG 59.432 45.833 0.00 0.00 38.91 2.74
3369 3696 6.627287 GCATGAGTGGACTGTGTAATAGTGTA 60.627 42.308 0.00 0.00 38.91 2.90
3370 3697 6.263516 TGAGTGGACTGTGTAATAGTGTAC 57.736 41.667 0.00 0.00 38.91 2.90
3397 3724 9.620259 GTTCAATTCATAGAAGAATTAGAGGGT 57.380 33.333 2.03 0.00 44.16 4.34
3538 3866 4.830046 TGCACACATGTTGGTATTAAGGTT 59.170 37.500 0.00 0.00 0.00 3.50
3539 3867 5.160641 GCACACATGTTGGTATTAAGGTTG 58.839 41.667 0.00 0.00 0.00 3.77
3618 3946 5.357878 TCCATTAGTTGATTGCAATGAGGTC 59.642 40.000 18.59 3.00 36.22 3.85
3620 3948 2.086869 AGTTGATTGCAATGAGGTCCG 58.913 47.619 18.59 0.00 36.22 4.79
3645 3973 7.391016 GCACAACAAAAACAACAAAGATCTAC 58.609 34.615 0.00 0.00 0.00 2.59
3651 3979 2.607187 ACAACAAAGATCTACGAGCCG 58.393 47.619 0.00 0.00 0.00 5.52
3654 3982 1.204941 ACAAAGATCTACGAGCCGCTT 59.795 47.619 0.00 0.00 0.00 4.68
3676 4004 7.201393 CGCTTCGGCATATTTTTGAAAAATACA 60.201 33.333 21.37 6.75 41.88 2.29
3698 4026 6.126409 ACACAGTGGTAATTCCTTCTTTTCA 58.874 36.000 5.31 0.00 37.07 2.69
3720 4048 7.206981 TCAGGAAGAAGCTGTAATTTTTCTG 57.793 36.000 0.00 0.00 30.77 3.02
3774 4102 1.755179 TGCTTATCCTTGGCTGCTTC 58.245 50.000 0.00 0.00 0.00 3.86
3800 4128 7.116233 CGTATACAGAATGCATATGTAAGCACA 59.884 37.037 21.80 6.93 44.49 4.57
3840 4168 6.434965 ACACTTCCATCATGACAATTCAATGA 59.565 34.615 0.00 0.00 34.61 2.57
3841 4169 7.123697 ACACTTCCATCATGACAATTCAATGAT 59.876 33.333 0.00 2.55 34.61 2.45
3876 4204 1.486310 CCATCCCTGGAGATCAAACGA 59.514 52.381 0.00 0.00 46.37 3.85
3926 4254 1.856259 AGCCCTCTAGAGATGGTGAGA 59.144 52.381 21.76 0.00 33.13 3.27
3931 4259 5.016173 CCCTCTAGAGATGGTGAGATTAGG 58.984 50.000 21.76 4.97 0.00 2.69
3945 4273 2.836981 AGATTAGGCTGACAGTTGCTCT 59.163 45.455 3.99 0.00 0.00 4.09
4003 4332 7.480760 ACATAGAATTTGCATGTAACCCTTT 57.519 32.000 0.00 0.00 31.26 3.11
4048 4377 4.250464 CCTGTTGATAAACTTAGACGGCA 58.750 43.478 0.00 0.00 0.00 5.69
4068 4397 4.540824 GCAAGGTTGTTCAAAGATCTGTC 58.459 43.478 0.00 0.00 0.00 3.51
4074 4403 5.049405 GGTTGTTCAAAGATCTGTCGTTCAT 60.049 40.000 0.00 0.00 0.00 2.57
4100 4429 2.802719 TGGAAGGGAAGCCATGTAAAC 58.197 47.619 0.00 0.00 0.00 2.01
4101 4430 2.378547 TGGAAGGGAAGCCATGTAAACT 59.621 45.455 0.00 0.00 0.00 2.66
4173 4502 4.122046 CACCATTGATCGCTCTGTATTCA 58.878 43.478 0.00 0.00 0.00 2.57
4192 4521 9.008965 TGTATTCAGTTGTTTGCTTACATATGT 57.991 29.630 13.93 13.93 0.00 2.29
4242 4571 4.022068 CCATTTGTTGGTACTGCATCTGTT 60.022 41.667 0.00 0.00 40.99 3.16
4246 4575 4.065088 TGTTGGTACTGCATCTGTTTCTC 58.935 43.478 0.00 0.00 0.00 2.87
4254 4583 4.527816 ACTGCATCTGTTTCTCTCTCTCTT 59.472 41.667 0.00 0.00 0.00 2.85
4255 4584 5.714333 ACTGCATCTGTTTCTCTCTCTCTTA 59.286 40.000 0.00 0.00 0.00 2.10
4273 4603 9.973450 TCTCTCTTATCTTAAATGTCAGCATAC 57.027 33.333 0.00 0.00 34.39 2.39
4330 4660 7.858879 GGTGTTTGTGTATTGGTAGTGTTTAAG 59.141 37.037 0.00 0.00 0.00 1.85
4358 4688 4.389890 TCTTTGCTGCAAAACTGAATGT 57.610 36.364 25.93 0.00 32.75 2.71
4537 4869 2.210961 GCCGCTACTCCTATCCAAAAC 58.789 52.381 0.00 0.00 0.00 2.43
4768 5102 0.824109 ACCATCGACGTCACCATGAT 59.176 50.000 17.16 6.72 0.00 2.45
5039 5374 3.293714 CACGCCATGCACACCCAA 61.294 61.111 0.00 0.00 0.00 4.12
5056 5392 1.686800 AACATCCCCATGCCCAAGC 60.687 57.895 0.00 0.00 40.48 4.01
5072 5408 3.361977 GCCGGCGCCTTCAAGAAA 61.362 61.111 26.68 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.746517 CTCCGCCACTACCCCATAC 59.253 63.158 0.00 0.00 0.00 2.39
3 4 3.480133 GCTCCGCCACTACCCCAT 61.480 66.667 0.00 0.00 0.00 4.00
372 373 1.125711 TTCTAATAGCCCTCGCCCCC 61.126 60.000 0.00 0.00 34.57 5.40
373 374 0.035036 GTTCTAATAGCCCTCGCCCC 59.965 60.000 0.00 0.00 34.57 5.80
374 375 0.756903 TGTTCTAATAGCCCTCGCCC 59.243 55.000 0.00 0.00 34.57 6.13
375 376 1.270358 CCTGTTCTAATAGCCCTCGCC 60.270 57.143 0.00 0.00 34.57 5.54
376 377 1.413077 ACCTGTTCTAATAGCCCTCGC 59.587 52.381 0.00 0.00 0.00 5.03
377 378 3.458189 CAACCTGTTCTAATAGCCCTCG 58.542 50.000 0.00 0.00 0.00 4.63
378 379 3.433740 CCCAACCTGTTCTAATAGCCCTC 60.434 52.174 0.00 0.00 0.00 4.30
379 380 2.509964 CCCAACCTGTTCTAATAGCCCT 59.490 50.000 0.00 0.00 0.00 5.19
380 381 2.508300 TCCCAACCTGTTCTAATAGCCC 59.492 50.000 0.00 0.00 0.00 5.19
381 382 3.926058 TCCCAACCTGTTCTAATAGCC 57.074 47.619 0.00 0.00 0.00 3.93
382 383 4.200092 CCTTCCCAACCTGTTCTAATAGC 58.800 47.826 0.00 0.00 0.00 2.97
383 384 4.781934 CCCTTCCCAACCTGTTCTAATAG 58.218 47.826 0.00 0.00 0.00 1.73
384 385 3.053917 GCCCTTCCCAACCTGTTCTAATA 60.054 47.826 0.00 0.00 0.00 0.98
385 386 2.291605 GCCCTTCCCAACCTGTTCTAAT 60.292 50.000 0.00 0.00 0.00 1.73
386 387 1.074889 GCCCTTCCCAACCTGTTCTAA 59.925 52.381 0.00 0.00 0.00 2.10
387 388 0.696501 GCCCTTCCCAACCTGTTCTA 59.303 55.000 0.00 0.00 0.00 2.10
388 389 1.460699 GCCCTTCCCAACCTGTTCT 59.539 57.895 0.00 0.00 0.00 3.01
389 390 1.606601 GGCCCTTCCCAACCTGTTC 60.607 63.158 0.00 0.00 0.00 3.18
390 391 1.955458 TTGGCCCTTCCCAACCTGTT 61.955 55.000 0.00 0.00 39.85 3.16
391 392 2.399607 TTGGCCCTTCCCAACCTGT 61.400 57.895 0.00 0.00 39.85 4.00
392 393 2.525592 TTGGCCCTTCCCAACCTG 59.474 61.111 0.00 0.00 39.85 4.00
396 397 1.813102 ATTTTGTTGGCCCTTCCCAA 58.187 45.000 0.00 0.00 42.37 4.12
397 398 2.158234 AGTATTTTGTTGGCCCTTCCCA 60.158 45.455 0.00 0.00 0.00 4.37
398 399 2.496070 GAGTATTTTGTTGGCCCTTCCC 59.504 50.000 0.00 0.00 0.00 3.97
399 400 3.161866 TGAGTATTTTGTTGGCCCTTCC 58.838 45.455 0.00 0.00 0.00 3.46
400 401 5.405935 AATGAGTATTTTGTTGGCCCTTC 57.594 39.130 0.00 0.00 0.00 3.46
401 402 6.926630 TTAATGAGTATTTTGTTGGCCCTT 57.073 33.333 0.00 0.00 0.00 3.95
402 403 7.038373 ACAATTAATGAGTATTTTGTTGGCCCT 60.038 33.333 0.00 0.00 27.93 5.19
403 404 7.064490 CACAATTAATGAGTATTTTGTTGGCCC 59.936 37.037 0.00 0.00 29.27 5.80
404 405 7.412891 GCACAATTAATGAGTATTTTGTTGGCC 60.413 37.037 0.00 0.00 29.27 5.36
405 406 7.117523 TGCACAATTAATGAGTATTTTGTTGGC 59.882 33.333 0.00 0.00 29.27 4.52
406 407 8.531622 TGCACAATTAATGAGTATTTTGTTGG 57.468 30.769 0.00 0.00 29.27 3.77
409 410 9.709495 ACAATGCACAATTAATGAGTATTTTGT 57.291 25.926 0.00 0.38 33.90 2.83
412 413 9.926158 TGAACAATGCACAATTAATGAGTATTT 57.074 25.926 0.00 0.00 33.90 1.40
416 417 9.577110 CTAATGAACAATGCACAATTAATGAGT 57.423 29.630 0.00 0.00 0.00 3.41
417 418 9.791820 TCTAATGAACAATGCACAATTAATGAG 57.208 29.630 0.00 0.00 0.00 2.90
425 426 9.734620 GCTAATTATCTAATGAACAATGCACAA 57.265 29.630 0.00 0.00 0.00 3.33
426 427 8.901793 TGCTAATTATCTAATGAACAATGCACA 58.098 29.630 0.00 0.00 0.00 4.57
427 428 9.390795 CTGCTAATTATCTAATGAACAATGCAC 57.609 33.333 0.00 0.00 0.00 4.57
428 429 8.077991 GCTGCTAATTATCTAATGAACAATGCA 58.922 33.333 0.00 0.00 0.00 3.96
429 430 8.077991 TGCTGCTAATTATCTAATGAACAATGC 58.922 33.333 0.00 0.00 0.00 3.56
430 431 9.955208 TTGCTGCTAATTATCTAATGAACAATG 57.045 29.630 0.00 0.00 0.00 2.82
441 442 9.736414 ACATCTCATATTTGCTGCTAATTATCT 57.264 29.630 14.08 0.00 0.00 1.98
445 446 8.790718 CCTAACATCTCATATTTGCTGCTAATT 58.209 33.333 14.08 1.16 0.00 1.40
446 447 7.392673 CCCTAACATCTCATATTTGCTGCTAAT 59.607 37.037 13.45 13.45 0.00 1.73
447 448 6.712095 CCCTAACATCTCATATTTGCTGCTAA 59.288 38.462 0.00 0.00 0.00 3.09
448 449 6.233434 CCCTAACATCTCATATTTGCTGCTA 58.767 40.000 0.00 0.00 0.00 3.49
449 450 5.068636 CCCTAACATCTCATATTTGCTGCT 58.931 41.667 0.00 0.00 0.00 4.24
450 451 4.217118 CCCCTAACATCTCATATTTGCTGC 59.783 45.833 0.00 0.00 0.00 5.25
451 452 5.624159 TCCCCTAACATCTCATATTTGCTG 58.376 41.667 0.00 0.00 0.00 4.41
452 453 5.222007 CCTCCCCTAACATCTCATATTTGCT 60.222 44.000 0.00 0.00 0.00 3.91
453 454 5.006386 CCTCCCCTAACATCTCATATTTGC 58.994 45.833 0.00 0.00 0.00 3.68
454 455 5.006386 GCCTCCCCTAACATCTCATATTTG 58.994 45.833 0.00 0.00 0.00 2.32
455 456 4.043435 GGCCTCCCCTAACATCTCATATTT 59.957 45.833 0.00 0.00 0.00 1.40
456 457 3.589288 GGCCTCCCCTAACATCTCATATT 59.411 47.826 0.00 0.00 0.00 1.28
457 458 3.185455 GGCCTCCCCTAACATCTCATAT 58.815 50.000 0.00 0.00 0.00 1.78
458 459 2.090210 TGGCCTCCCCTAACATCTCATA 60.090 50.000 3.32 0.00 0.00 2.15
459 460 1.345422 TGGCCTCCCCTAACATCTCAT 60.345 52.381 3.32 0.00 0.00 2.90
460 461 0.044092 TGGCCTCCCCTAACATCTCA 59.956 55.000 3.32 0.00 0.00 3.27
461 462 0.761802 CTGGCCTCCCCTAACATCTC 59.238 60.000 3.32 0.00 0.00 2.75
462 463 0.695803 CCTGGCCTCCCCTAACATCT 60.696 60.000 3.32 0.00 0.00 2.90
463 464 1.839894 CCTGGCCTCCCCTAACATC 59.160 63.158 3.32 0.00 0.00 3.06
464 465 2.386935 GCCTGGCCTCCCCTAACAT 61.387 63.158 7.66 0.00 0.00 2.71
465 466 3.015145 GCCTGGCCTCCCCTAACA 61.015 66.667 7.66 0.00 0.00 2.41
466 467 3.810188 GGCCTGGCCTCCCCTAAC 61.810 72.222 30.42 0.00 46.69 2.34
498 499 2.106332 CATACCGGTGGCGGAGAC 59.894 66.667 19.93 0.00 0.00 3.36
499 500 3.151710 CCATACCGGTGGCGGAGA 61.152 66.667 19.93 0.00 31.43 3.71
500 501 4.235762 CCCATACCGGTGGCGGAG 62.236 72.222 19.93 5.23 37.96 4.63
506 507 2.581726 AAATGGCCCCCATACCGGTG 62.582 60.000 19.93 0.00 44.40 4.94
507 508 1.881057 AAAATGGCCCCCATACCGGT 61.881 55.000 13.98 13.98 44.40 5.28
508 509 1.075600 AAAATGGCCCCCATACCGG 60.076 57.895 0.00 0.00 44.40 5.28
509 510 0.106217 AGAAAATGGCCCCCATACCG 60.106 55.000 0.00 0.00 44.40 4.02
510 511 2.174685 AAGAAAATGGCCCCCATACC 57.825 50.000 0.00 0.00 44.40 2.73
511 512 3.374764 AGAAAGAAAATGGCCCCCATAC 58.625 45.455 0.00 0.00 44.40 2.39
512 513 3.774842 AGAAAGAAAATGGCCCCCATA 57.225 42.857 0.00 0.00 44.40 2.74
514 515 3.774842 ATAGAAAGAAAATGGCCCCCA 57.225 42.857 0.00 0.00 38.19 4.96
515 516 6.434340 CAGTATATAGAAAGAAAATGGCCCCC 59.566 42.308 0.00 0.00 0.00 5.40
516 517 6.071896 GCAGTATATAGAAAGAAAATGGCCCC 60.072 42.308 0.00 0.00 0.00 5.80
517 518 6.071896 GGCAGTATATAGAAAGAAAATGGCCC 60.072 42.308 0.00 0.00 0.00 5.80
518 519 6.071896 GGGCAGTATATAGAAAGAAAATGGCC 60.072 42.308 0.00 0.00 41.53 5.36
519 520 6.490040 TGGGCAGTATATAGAAAGAAAATGGC 59.510 38.462 0.00 0.00 0.00 4.40
520 521 8.463930 TTGGGCAGTATATAGAAAGAAAATGG 57.536 34.615 0.00 0.00 0.00 3.16
521 522 8.571336 CCTTGGGCAGTATATAGAAAGAAAATG 58.429 37.037 0.00 0.00 0.00 2.32
522 523 8.282256 ACCTTGGGCAGTATATAGAAAGAAAAT 58.718 33.333 0.00 0.00 0.00 1.82
523 524 7.639378 ACCTTGGGCAGTATATAGAAAGAAAA 58.361 34.615 0.00 0.00 0.00 2.29
524 525 7.208064 ACCTTGGGCAGTATATAGAAAGAAA 57.792 36.000 0.00 0.00 0.00 2.52
525 526 6.824958 ACCTTGGGCAGTATATAGAAAGAA 57.175 37.500 0.00 0.00 0.00 2.52
526 527 6.591935 CAACCTTGGGCAGTATATAGAAAGA 58.408 40.000 0.00 0.00 0.00 2.52
527 528 5.239525 GCAACCTTGGGCAGTATATAGAAAG 59.760 44.000 0.00 0.00 0.00 2.62
528 529 5.104109 AGCAACCTTGGGCAGTATATAGAAA 60.104 40.000 0.00 0.00 0.00 2.52
529 530 4.412199 AGCAACCTTGGGCAGTATATAGAA 59.588 41.667 0.00 0.00 0.00 2.10
530 531 3.973973 AGCAACCTTGGGCAGTATATAGA 59.026 43.478 0.00 0.00 0.00 1.98
531 532 4.202357 TGAGCAACCTTGGGCAGTATATAG 60.202 45.833 0.00 0.00 0.00 1.31
532 533 3.714280 TGAGCAACCTTGGGCAGTATATA 59.286 43.478 0.00 0.00 0.00 0.86
533 534 2.509548 TGAGCAACCTTGGGCAGTATAT 59.490 45.455 0.00 0.00 0.00 0.86
534 535 1.912731 TGAGCAACCTTGGGCAGTATA 59.087 47.619 0.00 0.00 0.00 1.47
535 536 0.698238 TGAGCAACCTTGGGCAGTAT 59.302 50.000 0.00 0.00 0.00 2.12
536 537 0.476338 TTGAGCAACCTTGGGCAGTA 59.524 50.000 0.00 0.00 0.00 2.74
537 538 0.396974 TTTGAGCAACCTTGGGCAGT 60.397 50.000 0.00 0.00 0.00 4.40
538 539 0.752054 TTTTGAGCAACCTTGGGCAG 59.248 50.000 0.00 0.00 0.00 4.85
539 540 1.198713 TTTTTGAGCAACCTTGGGCA 58.801 45.000 0.00 0.00 0.00 5.36
573 574 0.686789 GGGGTTTTCCTTGCAGCAAT 59.313 50.000 8.67 0.00 40.46 3.56
574 575 0.689080 TGGGGTTTTCCTTGCAGCAA 60.689 50.000 7.81 7.81 40.46 3.91
585 586 2.146920 TTTGAACGAGGTGGGGTTTT 57.853 45.000 0.00 0.00 0.00 2.43
596 597 5.300539 TCCAAGTTTGATTCCATTTGAACGA 59.699 36.000 0.00 0.00 35.31 3.85
597 598 5.527951 TCCAAGTTTGATTCCATTTGAACG 58.472 37.500 0.00 0.00 35.31 3.95
605 606 2.813754 CGAAGCTCCAAGTTTGATTCCA 59.186 45.455 0.00 0.00 0.00 3.53
654 656 2.289072 CGAGCTCCTTTCCTTGTCTTCA 60.289 50.000 8.47 0.00 0.00 3.02
662 664 2.303022 TGATTTGACGAGCTCCTTTCCT 59.697 45.455 8.47 0.00 0.00 3.36
676 678 2.027285 TGGCTGATCGAGGTTGATTTGA 60.027 45.455 0.00 0.00 0.00 2.69
680 682 0.179062 GCTGGCTGATCGAGGTTGAT 60.179 55.000 0.00 0.00 0.00 2.57
691 693 1.527034 GAGACATGTTTGCTGGCTGA 58.473 50.000 0.00 0.00 30.10 4.26
696 698 1.136141 GCTGTCGAGACATGTTTGCTG 60.136 52.381 6.37 0.00 41.01 4.41
727 729 2.746142 CGGTCCCACCAGATACGTAGTA 60.746 54.545 0.08 0.00 43.29 1.82
752 754 5.654603 AAAAATATCTTTTCGGGGTCACC 57.345 39.130 0.00 0.00 33.44 4.02
795 803 3.504520 GGGACGAAGAGGTTTGCAAATTA 59.495 43.478 16.21 0.00 0.00 1.40
797 805 1.886542 GGGACGAAGAGGTTTGCAAAT 59.113 47.619 16.21 0.00 0.00 2.32
814 822 1.075301 TCTGCATCTCGGATGGGGA 60.075 57.895 13.51 0.00 0.00 4.81
818 826 3.449528 TCTTTCTCTGCATCTCGGATG 57.550 47.619 8.90 8.90 0.00 3.51
827 846 4.021981 TGATCGTTCTCTTCTTTCTCTGCA 60.022 41.667 0.00 0.00 0.00 4.41
835 854 6.039616 GCTAAGATGTGATCGTTCTCTTCTT 58.960 40.000 20.82 20.82 40.28 2.52
838 857 5.126222 TCAGCTAAGATGTGATCGTTCTCTT 59.874 40.000 0.00 0.00 0.00 2.85
854 873 5.788450 TCCTGTTTTCTCTTCTCAGCTAAG 58.212 41.667 0.00 0.00 0.00 2.18
860 1163 5.614324 TCAGTTCCTGTTTTCTCTTCTCA 57.386 39.130 0.00 0.00 32.61 3.27
904 1207 2.878406 CCACACGTCCTTTTGTTCTGAT 59.122 45.455 0.00 0.00 0.00 2.90
927 1230 2.125872 TGCCGTTAAGATCGCGCA 60.126 55.556 8.75 0.00 34.31 6.09
929 1232 0.525668 AGACTGCCGTTAAGATCGCG 60.526 55.000 0.00 0.00 0.00 5.87
969 1272 2.034879 CCTCGTCAATGCCGCTTGT 61.035 57.895 0.00 0.00 0.00 3.16
996 1299 1.684248 GCTGATTCCACTTCCATGGCT 60.684 52.381 6.96 0.00 39.85 4.75
1168 1471 2.383527 CGCTGAGGAAGTTGACGCC 61.384 63.158 0.00 0.00 0.00 5.68
1169 1472 1.618640 GACGCTGAGGAAGTTGACGC 61.619 60.000 0.00 0.00 0.00 5.19
1170 1473 1.337817 CGACGCTGAGGAAGTTGACG 61.338 60.000 0.00 0.00 0.00 4.35
1171 1474 1.618640 GCGACGCTGAGGAAGTTGAC 61.619 60.000 13.73 0.00 0.00 3.18
1175 1478 4.421479 CCGCGACGCTGAGGAAGT 62.421 66.667 19.02 0.00 0.00 3.01
1249 1552 0.456221 CGCGGAGATTGTACAGAGGT 59.544 55.000 0.00 0.00 0.00 3.85
1251 1554 2.186076 GAACGCGGAGATTGTACAGAG 58.814 52.381 12.47 0.00 0.00 3.35
1259 1562 2.194271 GAGAAATCGAACGCGGAGATT 58.806 47.619 12.47 15.02 38.28 2.40
1260 1563 1.841450 GAGAAATCGAACGCGGAGAT 58.159 50.000 12.47 9.31 38.28 2.75
1298 1601 2.818274 AAATCGGAGGGCGAACGC 60.818 61.111 10.81 10.81 41.06 4.84
1303 1606 1.948104 TGATAACAAATCGGAGGGCG 58.052 50.000 0.00 0.00 0.00 6.13
1304 1607 4.499696 CCAAATGATAACAAATCGGAGGGC 60.500 45.833 0.00 0.00 0.00 5.19
1305 1608 4.037923 CCCAAATGATAACAAATCGGAGGG 59.962 45.833 0.00 0.00 0.00 4.30
1306 1609 4.499696 GCCCAAATGATAACAAATCGGAGG 60.500 45.833 0.00 0.00 0.00 4.30
1309 1612 3.371168 CGCCCAAATGATAACAAATCGG 58.629 45.455 0.00 0.00 0.00 4.18
1318 1621 2.936919 ATCAGAGCGCCCAAATGATA 57.063 45.000 2.29 0.00 0.00 2.15
1376 1685 2.818274 GATGCGGTTGGACGGGAC 60.818 66.667 0.00 0.00 0.00 4.46
1378 1687 4.096003 AGGATGCGGTTGGACGGG 62.096 66.667 0.00 0.00 0.00 5.28
1409 1720 0.111266 CACGCTGAAAACGAACGGAG 60.111 55.000 0.00 0.00 0.00 4.63
1466 1784 3.422603 CGTGGTCGGTTACAATTTCTTCG 60.423 47.826 0.00 0.00 0.00 3.79
1523 1841 2.073816 AGCTTCAGCATTGCATTTTGC 58.926 42.857 11.91 8.26 45.16 3.68
1524 1842 3.064207 ACAGCTTCAGCATTGCATTTTG 58.936 40.909 11.91 0.06 45.16 2.44
1525 1843 3.396260 ACAGCTTCAGCATTGCATTTT 57.604 38.095 11.91 0.00 45.16 1.82
1526 1844 3.396260 AACAGCTTCAGCATTGCATTT 57.604 38.095 11.91 0.00 45.16 2.32
1527 1845 4.730949 ATAACAGCTTCAGCATTGCATT 57.269 36.364 11.91 0.00 45.16 3.56
1528 1846 5.128205 TCTATAACAGCTTCAGCATTGCAT 58.872 37.500 11.91 0.00 45.16 3.96
1529 1847 4.516323 TCTATAACAGCTTCAGCATTGCA 58.484 39.130 11.91 0.00 45.16 4.08
1530 1848 5.490139 TTCTATAACAGCTTCAGCATTGC 57.510 39.130 0.00 0.00 45.16 3.56
1531 1849 8.804743 CAATTTTCTATAACAGCTTCAGCATTG 58.195 33.333 0.75 0.00 45.16 2.82
1532 1850 7.490402 GCAATTTTCTATAACAGCTTCAGCATT 59.510 33.333 0.75 0.00 45.16 3.56
1533 1851 6.976925 GCAATTTTCTATAACAGCTTCAGCAT 59.023 34.615 0.75 0.00 45.16 3.79
1534 1852 6.151648 AGCAATTTTCTATAACAGCTTCAGCA 59.848 34.615 0.75 0.00 45.16 4.41
1535 1853 6.558909 AGCAATTTTCTATAACAGCTTCAGC 58.441 36.000 0.00 0.00 42.49 4.26
1536 1854 8.887717 ACTAGCAATTTTCTATAACAGCTTCAG 58.112 33.333 0.00 0.00 32.70 3.02
1537 1855 8.792830 ACTAGCAATTTTCTATAACAGCTTCA 57.207 30.769 0.00 0.00 32.70 3.02
1589 1907 5.300034 TGCTTGGCCATATTAACTGATGAAG 59.700 40.000 6.09 0.00 0.00 3.02
1632 1950 9.492973 ACAAGGATGAATAAAGTTTTCCAAATG 57.507 29.630 6.15 4.85 0.00 2.32
1658 1976 7.748677 AGCCCCTTTTAGTTAACAACTAGTAA 58.251 34.615 8.61 0.00 44.22 2.24
1659 1977 7.016465 TGAGCCCCTTTTAGTTAACAACTAGTA 59.984 37.037 8.61 0.00 44.22 1.82
1660 1978 6.183361 TGAGCCCCTTTTAGTTAACAACTAGT 60.183 38.462 8.61 0.00 44.22 2.57
1661 1979 6.148976 GTGAGCCCCTTTTAGTTAACAACTAG 59.851 42.308 8.61 0.05 44.22 2.57
1686 2004 3.080319 CCCTTCTTGGCTTCTTTCTCAG 58.920 50.000 0.00 0.00 0.00 3.35
1697 2015 2.636412 GGCGAAACCCCTTCTTGGC 61.636 63.158 0.00 0.00 31.20 4.52
1698 2016 0.611896 ATGGCGAAACCCCTTCTTGG 60.612 55.000 0.00 0.00 37.83 3.61
1699 2017 1.256812 AATGGCGAAACCCCTTCTTG 58.743 50.000 0.00 0.00 37.83 3.02
1700 2018 2.009681 AAATGGCGAAACCCCTTCTT 57.990 45.000 0.00 0.00 37.83 2.52
1701 2019 1.618343 CAAAATGGCGAAACCCCTTCT 59.382 47.619 0.00 0.00 37.83 2.85
1702 2020 1.616374 TCAAAATGGCGAAACCCCTTC 59.384 47.619 0.00 0.00 37.83 3.46
1703 2021 1.710816 TCAAAATGGCGAAACCCCTT 58.289 45.000 0.00 0.00 37.83 3.95
1704 2022 1.550072 CATCAAAATGGCGAAACCCCT 59.450 47.619 0.00 0.00 37.83 4.79
1741 2059 1.705337 AACGAGCACAGCACACACAC 61.705 55.000 0.00 0.00 0.00 3.82
1783 2106 2.133281 TGATTGGGCAGAATCAGTGG 57.867 50.000 6.99 0.00 37.41 4.00
1796 2119 3.003394 TGTAAGCCATCACCTGATTGG 57.997 47.619 0.00 0.00 42.93 3.16
1812 2135 8.486210 ACCAGTCTTAGATCTGCAAATATGTAA 58.514 33.333 5.18 0.00 0.00 2.41
1817 2140 7.523873 CGGATACCAGTCTTAGATCTGCAAATA 60.524 40.741 5.18 0.00 0.00 1.40
1831 2154 6.489603 AGAGATTATCATCGGATACCAGTCT 58.510 40.000 0.00 0.00 35.76 3.24
1851 2174 4.078571 AGTCCAATGACCACCCTATAGAGA 60.079 45.833 0.00 0.00 42.81 3.10
1852 2175 4.227197 AGTCCAATGACCACCCTATAGAG 58.773 47.826 0.00 0.00 42.81 2.43
1936 2260 6.356556 TGGTCATGAGTCAGGTTATTATTGG 58.643 40.000 4.47 0.00 0.00 3.16
1938 2262 6.931281 CGATGGTCATGAGTCAGGTTATTATT 59.069 38.462 4.47 0.00 0.00 1.40
1939 2263 6.267699 TCGATGGTCATGAGTCAGGTTATTAT 59.732 38.462 4.47 0.00 0.00 1.28
1940 2264 5.596772 TCGATGGTCATGAGTCAGGTTATTA 59.403 40.000 4.47 0.00 0.00 0.98
1941 2265 4.405680 TCGATGGTCATGAGTCAGGTTATT 59.594 41.667 4.47 0.00 0.00 1.40
1942 2266 3.960755 TCGATGGTCATGAGTCAGGTTAT 59.039 43.478 4.47 0.00 0.00 1.89
1948 2272 5.598416 AACTAATCGATGGTCATGAGTCA 57.402 39.130 0.00 0.00 0.00 3.41
1957 2281 4.202223 ACGCTGGATTAACTAATCGATGGT 60.202 41.667 0.00 0.00 42.25 3.55
1978 2305 4.735822 GCTTAGCTATGTGAACAGACTACG 59.264 45.833 8.30 0.00 0.00 3.51
1982 2309 3.548268 GTCGCTTAGCTATGTGAACAGAC 59.452 47.826 20.71 8.32 0.00 3.51
1984 2311 2.531912 CGTCGCTTAGCTATGTGAACAG 59.468 50.000 20.71 13.09 0.00 3.16
1995 2322 3.692576 TCAGACTAATTCGTCGCTTAGC 58.307 45.455 4.61 0.00 38.90 3.09
2026 2353 0.329596 AAATGTGCCAGGAGAGGGTC 59.670 55.000 0.00 0.00 0.00 4.46
2032 2359 5.404466 TGGAAAATAAAATGTGCCAGGAG 57.596 39.130 0.00 0.00 0.00 3.69
2083 2410 4.391523 GTCACTTCCTTTGAGATCAAGAGC 59.608 45.833 0.00 0.00 37.15 4.09
2084 2411 5.545588 TGTCACTTCCTTTGAGATCAAGAG 58.454 41.667 0.00 0.00 37.15 2.85
2085 2412 5.551305 TGTCACTTCCTTTGAGATCAAGA 57.449 39.130 0.00 0.00 37.15 3.02
2086 2413 7.102346 ACTATGTCACTTCCTTTGAGATCAAG 58.898 38.462 0.00 0.00 37.15 3.02
2087 2414 7.009179 ACTATGTCACTTCCTTTGAGATCAA 57.991 36.000 0.00 0.00 30.17 2.57
2088 2415 6.611613 ACTATGTCACTTCCTTTGAGATCA 57.388 37.500 0.00 0.00 30.17 2.92
2120 2447 2.620115 CCTAGGCCACACAAAGCATATG 59.380 50.000 5.01 0.00 0.00 1.78
2129 2456 2.969821 AAACATTCCTAGGCCACACA 57.030 45.000 5.01 0.00 0.00 3.72
2136 2463 6.313905 GTCACATGACACTAAACATTCCTAGG 59.686 42.308 0.82 0.82 44.18 3.02
2290 2617 7.591426 CACTAACTTGACTTCATAAACCTTTGC 59.409 37.037 0.00 0.00 0.00 3.68
2340 2667 1.068434 ACATTTTGCCAAAGTGGGTCG 59.932 47.619 15.82 0.00 38.19 4.79
2350 2677 8.856153 TGAATTAGAGTACTTACATTTTGCCA 57.144 30.769 0.00 0.00 0.00 4.92
2392 2719 7.817478 TCACACATTTACACAGTATTCCAGTAG 59.183 37.037 0.00 0.00 0.00 2.57
2423 2750 3.861840 ACATCAGTAATGGAGAACGGTG 58.138 45.455 0.00 0.00 39.90 4.94
2438 2765 5.795972 TCTCTCCGATACCTACTACATCAG 58.204 45.833 0.00 0.00 0.00 2.90
2445 2772 5.697067 ACTGAAATCTCTCCGATACCTACT 58.303 41.667 0.00 0.00 0.00 2.57
2455 2782 1.004745 TGGGCCAACTGAAATCTCTCC 59.995 52.381 2.13 0.00 0.00 3.71
2481 2808 6.369065 AGAGCACGAGTTAGAATTTGGTTTAG 59.631 38.462 0.00 0.00 0.00 1.85
2499 2826 5.406649 AGACAGAAAGAGAAATAGAGCACG 58.593 41.667 0.00 0.00 0.00 5.34
2588 2915 2.559440 CAGAGAGCAAACCCTATGAGC 58.441 52.381 0.00 0.00 0.00 4.26
2595 2922 0.398318 ACAGACCAGAGAGCAAACCC 59.602 55.000 0.00 0.00 0.00 4.11
2609 2936 4.392754 TCATGTCATACAATGCACACAGAC 59.607 41.667 0.00 0.00 0.00 3.51
2611 2938 4.950434 TCATGTCATACAATGCACACAG 57.050 40.909 0.00 0.00 0.00 3.66
2637 2964 2.365617 GGAATACCTGAGGATGAAGCGA 59.634 50.000 4.99 0.00 0.00 4.93
2691 3018 6.348458 CGTATGGCATCTTCACTTTCTTCAAA 60.348 38.462 1.65 0.00 0.00 2.69
2774 3101 6.339587 AGAAGTTCAAAACTGTTCACCAAA 57.660 33.333 5.50 0.00 41.91 3.28
2780 3107 6.551736 TGCTACAAGAAGTTCAAAACTGTTC 58.448 36.000 5.50 0.00 41.91 3.18
2793 3120 0.671781 ACGCTGCCTGCTACAAGAAG 60.672 55.000 0.00 0.00 40.11 2.85
2809 3136 2.806244 ACCTGTTGTTTGTCAGATACGC 59.194 45.455 0.00 0.00 34.02 4.42
2828 3155 3.815401 ACATACTCAGTGCAAAGACAACC 59.185 43.478 0.00 0.00 0.00 3.77
2836 3163 6.405538 TGACATAATCACATACTCAGTGCAA 58.594 36.000 0.00 0.00 36.93 4.08
2912 3239 7.132016 AGGGGGATAATAAGGAGGTAACAAAAT 59.868 37.037 0.00 0.00 41.41 1.82
2913 3240 6.452330 AGGGGGATAATAAGGAGGTAACAAAA 59.548 38.462 0.00 0.00 41.41 2.44
2917 3244 5.748139 GCAAGGGGGATAATAAGGAGGTAAC 60.748 48.000 0.00 0.00 0.00 2.50
3000 3327 5.693961 TCCATATAAAGCAATCCAAGCAGA 58.306 37.500 0.00 0.00 0.00 4.26
3001 3328 5.766670 TCTCCATATAAAGCAATCCAAGCAG 59.233 40.000 0.00 0.00 0.00 4.24
3234 3561 9.784680 CTAGAATCATTTCTTCCTTCAACAATG 57.215 33.333 0.00 0.00 42.29 2.82
3271 3598 2.271800 CTCATACGAGCAGTTGGAACC 58.728 52.381 0.00 0.00 31.00 3.62
3304 3631 4.320788 GCTTTTCCAGAACATGAAGACAGG 60.321 45.833 0.00 0.00 0.00 4.00
3344 3671 4.568359 CACTATTACACAGTCCACTCATGC 59.432 45.833 0.00 0.00 0.00 4.06
3348 3675 5.106396 ACGTACACTATTACACAGTCCACTC 60.106 44.000 0.00 0.00 0.00 3.51
3364 3691 9.436957 AATTCTTCTATGAATTGAACGTACACT 57.563 29.630 0.00 0.00 42.81 3.55
3369 3696 9.319143 CCTCTAATTCTTCTATGAATTGAACGT 57.681 33.333 11.34 0.00 43.79 3.99
3370 3697 8.768955 CCCTCTAATTCTTCTATGAATTGAACG 58.231 37.037 11.34 0.00 43.79 3.95
3397 3724 2.850439 GCTGATGCTGAGTTGCTGA 58.150 52.632 0.00 0.00 36.03 4.26
3466 3794 6.426937 TCATTAAGCATAGTAATTCCTTCGGC 59.573 38.462 0.00 0.00 0.00 5.54
3492 3820 6.311935 GCATGCATGTTCATATGTCACTTTTT 59.688 34.615 26.79 0.00 0.00 1.94
3503 3831 4.035278 CATGTGTGCATGCATGTTCATA 57.965 40.909 25.64 21.83 44.87 2.15
3618 3946 3.430218 TCTTTGTTGTTTTTGTTGTGCGG 59.570 39.130 0.00 0.00 0.00 5.69
3620 3948 6.407475 AGATCTTTGTTGTTTTTGTTGTGC 57.593 33.333 0.00 0.00 0.00 4.57
3651 3979 7.897800 GTGTATTTTTCAAAAATATGCCGAAGC 59.102 33.333 16.58 4.27 40.48 3.86
3654 3982 8.085296 ACTGTGTATTTTTCAAAAATATGCCGA 58.915 29.630 16.58 0.00 0.00 5.54
3676 4004 5.770162 CCTGAAAAGAAGGAATTACCACTGT 59.230 40.000 0.00 0.00 42.04 3.55
3698 4026 7.503902 AGAACAGAAAAATTACAGCTTCTTCCT 59.496 33.333 0.00 0.00 0.00 3.36
3720 4048 6.629252 GTGAAGTTTTCATCGACAAAGAGAAC 59.371 38.462 0.00 0.00 42.47 3.01
3774 4102 7.116233 TGTGCTTACATATGCATTCTGTATACG 59.884 37.037 17.54 12.22 41.45 3.06
3800 4128 1.213296 AGTGTCCACAAGAACCACCT 58.787 50.000 0.00 0.00 0.00 4.00
3840 4168 7.243810 TCCAGGGATGGGGTTTTGAATATATAT 59.756 37.037 0.00 0.00 0.00 0.86
3841 4169 6.568432 TCCAGGGATGGGGTTTTGAATATATA 59.432 38.462 0.00 0.00 0.00 0.86
3876 4204 9.466497 TCTATGCAAGAAGAAACCATCTAAATT 57.534 29.630 0.00 0.00 37.42 1.82
3926 4254 3.710209 AAGAGCAACTGTCAGCCTAAT 57.290 42.857 0.00 0.00 0.00 1.73
4003 4332 5.474825 GGTTTCCTGACAAGTTCACAAAAA 58.525 37.500 0.00 0.00 0.00 1.94
4048 4377 4.451900 ACGACAGATCTTTGAACAACCTT 58.548 39.130 0.00 0.00 0.00 3.50
4068 4397 1.019673 CCCTTCCATGCTGATGAACG 58.980 55.000 0.00 0.00 0.00 3.95
4074 4403 1.304282 GGCTTCCCTTCCATGCTGA 59.696 57.895 0.00 0.00 0.00 4.26
4100 4429 7.495934 TGTTGACTAGAAAGTGAAAAGAAGGAG 59.504 37.037 0.00 0.00 35.56 3.69
4101 4430 7.335627 TGTTGACTAGAAAGTGAAAAGAAGGA 58.664 34.615 0.00 0.00 35.56 3.36
4139 4468 5.392380 GCGATCAATGGTGAAAACAGAATCT 60.392 40.000 0.00 0.00 37.30 2.40
4173 4502 5.468746 ACACGACATATGTAAGCAAACAACT 59.531 36.000 8.71 0.00 32.02 3.16
4192 4521 6.984474 AGAAGTCTTTCTATTGACAAACACGA 59.016 34.615 0.00 0.00 41.82 4.35
4254 4583 6.873605 CCCATCGTATGCTGACATTTAAGATA 59.126 38.462 0.00 0.00 37.74 1.98
4255 4584 5.702670 CCCATCGTATGCTGACATTTAAGAT 59.297 40.000 0.00 0.00 37.74 2.40
4273 4603 3.803082 CCGCTGCAACACCCATCG 61.803 66.667 0.00 0.00 0.00 3.84
4409 4740 3.473647 CAGATGCAGAGGCCGGGA 61.474 66.667 2.18 0.00 40.13 5.14
4537 4869 0.531532 CAGCTAGCACCCCTTCATCG 60.532 60.000 18.83 0.00 0.00 3.84
4768 5102 2.116983 GAGGAGGTTGCTGTCTGGCA 62.117 60.000 0.00 0.00 40.74 4.92
5039 5374 2.042639 GCTTGGGCATGGGGATGT 60.043 61.111 0.00 0.00 38.54 3.06
5056 5392 1.966451 ACTTTCTTGAAGGCGCCGG 60.966 57.895 23.20 10.29 39.79 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.