Multiple sequence alignment - TraesCS7B01G049700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G049700 chr7B 100.000 3072 0 0 1 3072 50979421 50976350 0.000000e+00 5674.0
1 TraesCS7B01G049700 chr7D 92.701 2699 133 26 292 2966 96500797 96498139 0.000000e+00 3834.0
2 TraesCS7B01G049700 chr7D 82.533 458 56 11 1 441 96503688 96503238 6.220000e-102 381.0
3 TraesCS7B01G049700 chr7D 92.381 105 7 1 434 537 96501273 96501169 6.860000e-32 148.0
4 TraesCS7B01G049700 chr7A 93.385 2177 94 21 465 2616 99665488 99663337 0.000000e+00 3177.0
5 TraesCS7B01G049700 chr7A 94.831 503 16 5 2465 2966 99663336 99662843 0.000000e+00 776.0
6 TraesCS7B01G049700 chr6A 80.636 346 46 13 1 330 603603871 603604211 6.580000e-62 248.0
7 TraesCS7B01G049700 chr6A 76.098 205 40 7 264 461 504160962 504160760 7.010000e-17 99.0
8 TraesCS7B01G049700 chr2A 77.073 410 67 12 39 425 84541255 84541660 8.630000e-51 211.0
9 TraesCS7B01G049700 chr4A 76.757 370 64 18 51 405 596726251 596725889 1.450000e-43 187.0
10 TraesCS7B01G049700 chr4A 96.970 33 1 0 340 372 693597787 693597755 4.280000e-04 56.5
11 TraesCS7B01G049700 chr1B 81.726 197 29 7 272 463 374050449 374050255 1.140000e-34 158.0
12 TraesCS7B01G049700 chr2B 79.747 158 28 3 272 425 202573690 202573847 9.000000e-21 111.0
13 TraesCS7B01G049700 chr6B 78.333 180 32 4 23 199 467910848 467911023 3.240000e-20 110.0
14 TraesCS7B01G049700 chr2D 83.898 118 16 3 348 463 69498890 69498774 3.240000e-20 110.0
15 TraesCS7B01G049700 chr3B 74.315 292 52 13 149 424 418458861 418458577 5.420000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G049700 chr7B 50976350 50979421 3071 True 5674.000000 5674 100.000 1 3072 1 chr7B.!!$R1 3071
1 TraesCS7B01G049700 chr7D 96498139 96503688 5549 True 1454.333333 3834 89.205 1 2966 3 chr7D.!!$R1 2965
2 TraesCS7B01G049700 chr7A 99662843 99665488 2645 True 1976.500000 3177 94.108 465 2966 2 chr7A.!!$R1 2501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.031585 CATCAATGCCGGCCTCAATG 59.968 55.0 26.77 18.21 0.00 2.82 F
352 370 0.241749 ATACTCGTCGTCGGTTTGCA 59.758 50.0 1.55 0.00 37.69 4.08 F
1510 4124 0.037326 TGCCGCCTTCCGATATCATC 60.037 55.0 3.12 0.00 40.02 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1408 4022 0.108615 AGTTGATCTTGAGGCCGTCG 60.109 55.0 0.00 0.00 0.0 5.12 R
1726 4340 0.179137 CAGCTGGCAATGCATCACTG 60.179 55.0 7.79 5.01 0.0 3.66 R
3013 5795 0.034089 ACCTCCTTTACATGGCAGGC 60.034 55.0 0.00 0.00 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.249692 CCGGAGCGTGGCTTAAAAA 58.750 52.632 0.00 0.00 39.88 1.94
30 31 0.168128 CCGGAGCGTGGCTTAAAAAG 59.832 55.000 0.00 0.00 39.88 2.27
54 55 2.742116 GCCAGGCCATACGAAGGGA 61.742 63.158 5.01 0.00 0.00 4.20
74 75 2.334946 GGTCAGCCGCTTCAATGCA 61.335 57.895 0.00 0.00 0.00 3.96
83 84 1.798725 CTTCAATGCAGCGCAACGG 60.799 57.895 11.47 0.00 43.62 4.44
96 97 1.949257 CAACGGCAGGAGTTGGTTC 59.051 57.895 1.53 0.00 43.64 3.62
99 100 2.035783 GGCAGGAGTTGGTTCCCC 59.964 66.667 0.00 0.00 38.02 4.81
180 181 2.990479 GCTCCCTCCGGTCACATT 59.010 61.111 0.00 0.00 0.00 2.71
184 185 2.264480 CCTCCGGTCACATTGCGA 59.736 61.111 0.00 0.00 0.00 5.10
201 202 1.451927 GACATCAATGCCGGCCTCA 60.452 57.895 26.77 5.45 0.00 3.86
203 204 0.396139 ACATCAATGCCGGCCTCAAT 60.396 50.000 26.77 7.74 0.00 2.57
204 205 0.031585 CATCAATGCCGGCCTCAATG 59.968 55.000 26.77 18.21 0.00 2.82
209 210 3.064324 GCCGGCCTCAATGTGCTT 61.064 61.111 18.11 0.00 0.00 3.91
212 213 1.213537 CGGCCTCAATGTGCTTTGG 59.786 57.895 0.00 0.00 0.00 3.28
214 215 1.079612 GCCTCAATGTGCTTTGGGC 60.080 57.895 11.40 11.40 36.48 5.36
218 219 2.117206 AATGTGCTTTGGGCCGGA 59.883 55.556 5.05 0.00 40.92 5.14
228 242 2.521708 GGGCCGGAATGAATGGGG 60.522 66.667 5.05 0.00 0.00 4.96
238 252 2.440065 GAATGGGGGCGTGCATCA 60.440 61.111 0.00 0.00 0.00 3.07
241 255 2.497792 AATGGGGGCGTGCATCAGAA 62.498 55.000 0.00 0.00 0.00 3.02
249 263 1.446907 CGTGCATCAGAAGGAAAGCT 58.553 50.000 0.00 0.00 33.31 3.74
259 273 4.491409 GGAAAGCTCGGGAGGGGC 62.491 72.222 0.00 0.00 0.00 5.80
260 274 3.717294 GAAAGCTCGGGAGGGGCA 61.717 66.667 0.00 0.00 0.00 5.36
262 276 4.722535 AAGCTCGGGAGGGGCAGA 62.723 66.667 0.00 0.00 0.00 4.26
267 281 2.765807 CGGGAGGGGCAGAGTGAT 60.766 66.667 0.00 0.00 0.00 3.06
275 289 1.632589 GGGCAGAGTGATGGGTTTTT 58.367 50.000 0.00 0.00 0.00 1.94
277 291 2.238521 GGCAGAGTGATGGGTTTTTGA 58.761 47.619 0.00 0.00 0.00 2.69
304 319 2.125673 GCGGCAGAAGCGGACTTA 60.126 61.111 0.00 0.00 43.11 2.24
330 346 4.653888 CCGGACCCCGCAAACCTT 62.654 66.667 0.00 0.00 46.86 3.50
333 349 1.529713 GGACCCCGCAAACCTTTCA 60.530 57.895 0.00 0.00 0.00 2.69
334 350 0.898326 GGACCCCGCAAACCTTTCAT 60.898 55.000 0.00 0.00 0.00 2.57
338 354 1.743394 CCCCGCAAACCTTTCATACTC 59.257 52.381 0.00 0.00 0.00 2.59
339 355 1.396996 CCCGCAAACCTTTCATACTCG 59.603 52.381 0.00 0.00 0.00 4.18
341 357 2.093783 CCGCAAACCTTTCATACTCGTC 59.906 50.000 0.00 0.00 0.00 4.20
342 358 2.222508 CGCAAACCTTTCATACTCGTCG 60.223 50.000 0.00 0.00 0.00 5.12
343 359 2.735134 GCAAACCTTTCATACTCGTCGT 59.265 45.455 0.00 0.00 0.00 4.34
352 370 0.241749 ATACTCGTCGTCGGTTTGCA 59.758 50.000 1.55 0.00 37.69 4.08
366 384 1.069227 GTTTGCAGGAGAAATCGCGTT 60.069 47.619 5.77 0.00 0.00 4.84
384 402 2.358125 CGGACCATGCCGTGAACA 60.358 61.111 3.80 0.00 46.07 3.18
386 404 1.003839 GGACCATGCCGTGAACAGA 60.004 57.895 0.00 0.00 0.00 3.41
387 405 0.392998 GGACCATGCCGTGAACAGAT 60.393 55.000 0.00 0.00 0.00 2.90
388 406 1.134521 GGACCATGCCGTGAACAGATA 60.135 52.381 0.00 0.00 0.00 1.98
389 407 2.627945 GACCATGCCGTGAACAGATAA 58.372 47.619 0.00 0.00 0.00 1.75
441 459 1.202722 ACAGTTGTGGGAGGTTTACGG 60.203 52.381 0.00 0.00 0.00 4.02
442 460 1.134228 AGTTGTGGGAGGTTTACGGT 58.866 50.000 0.00 0.00 0.00 4.83
443 461 1.071228 AGTTGTGGGAGGTTTACGGTC 59.929 52.381 0.00 0.00 0.00 4.79
444 462 1.071228 GTTGTGGGAGGTTTACGGTCT 59.929 52.381 0.00 0.00 0.00 3.85
463 2454 0.548031 TGCCTTGGAGATGCCCTAAG 59.452 55.000 0.00 0.00 34.97 2.18
480 2471 5.576128 CCCTAAGGAACCTAATCCAAAACA 58.424 41.667 0.00 0.00 42.27 2.83
568 3172 4.999950 GCATACATGGAATCGAGGAAGAAT 59.000 41.667 0.00 0.00 0.00 2.40
604 3208 1.909700 ATGGGATGTCAAACGTGCTT 58.090 45.000 0.00 0.00 0.00 3.91
605 3209 1.234821 TGGGATGTCAAACGTGCTTC 58.765 50.000 0.00 0.00 0.00 3.86
606 3210 1.234821 GGGATGTCAAACGTGCTTCA 58.765 50.000 0.00 0.00 0.00 3.02
607 3211 1.069227 GGGATGTCAAACGTGCTTCAC 60.069 52.381 0.00 0.00 0.00 3.18
631 3235 2.195956 GGGAGCAGTTATGGGGGC 59.804 66.667 0.00 0.00 0.00 5.80
671 3275 1.133790 ACAGTCCGATAACTACCGTGC 59.866 52.381 0.00 0.00 0.00 5.34
672 3276 0.379669 AGTCCGATAACTACCGTGCG 59.620 55.000 0.00 0.00 0.00 5.34
673 3277 0.593263 GTCCGATAACTACCGTGCGG 60.593 60.000 9.29 9.29 40.06 5.69
687 3291 2.355837 GCGGTGCGAGAACAGTCA 60.356 61.111 0.00 0.00 0.00 3.41
696 3300 3.057806 TGCGAGAACAGTCAGATACGAAA 60.058 43.478 0.00 0.00 0.00 3.46
726 3330 2.567049 CACGTCCCACGAGGTCTC 59.433 66.667 2.48 0.00 46.05 3.36
732 3339 2.408241 CCCACGAGGTCTCCGTCTC 61.408 68.421 0.00 0.00 38.29 3.36
733 3340 2.408241 CCACGAGGTCTCCGTCTCC 61.408 68.421 0.00 0.00 38.29 3.71
734 3341 1.377463 CACGAGGTCTCCGTCTCCT 60.377 63.158 0.00 0.00 38.29 3.69
858 3466 4.919754 GTCCATTTTTCACATCTGCACTTC 59.080 41.667 0.00 0.00 0.00 3.01
961 3575 3.565214 TGGCTGGCGGTTCTTCCA 61.565 61.111 0.00 0.00 35.57 3.53
989 3603 1.739338 GATCCTGCTCGTCCGTCCAT 61.739 60.000 0.00 0.00 0.00 3.41
1014 3628 1.648720 CATAATGCCGGCCACGAAG 59.351 57.895 26.77 5.66 44.60 3.79
1025 3639 1.728426 CCACGAAGACGGTGTCGAC 60.728 63.158 9.11 9.11 44.46 4.20
1049 3663 2.359975 GCCGGTGAAAGTGGAGGG 60.360 66.667 1.90 0.00 0.00 4.30
1051 3665 2.742372 CGGTGAAAGTGGAGGGCG 60.742 66.667 0.00 0.00 0.00 6.13
1052 3666 2.430367 GGTGAAAGTGGAGGGCGT 59.570 61.111 0.00 0.00 0.00 5.68
1053 3667 1.671379 GGTGAAAGTGGAGGGCGTC 60.671 63.158 0.00 0.00 0.00 5.19
1063 3677 3.509137 GAGGGCGTCCACGTGTTCA 62.509 63.158 15.65 0.00 42.22 3.18
1069 3683 1.068474 CGTCCACGTGTTCAAGATCC 58.932 55.000 15.65 0.00 34.11 3.36
1072 3686 1.635663 CCACGTGTTCAAGATCCGCC 61.636 60.000 15.65 0.00 0.00 6.13
1114 3728 2.537560 GGCATCGGCAAGGTCATCG 61.538 63.158 0.00 0.00 43.71 3.84
1200 3814 3.482786 GCAACACAACGAAGATCACATC 58.517 45.455 0.00 0.00 0.00 3.06
1239 3853 3.959991 GAGCAAGGACGCCAGGGTC 62.960 68.421 6.32 6.32 36.18 4.46
1323 3937 1.817099 GCCGAGGATGTTCTGCCAG 60.817 63.158 0.00 0.00 0.00 4.85
1368 3982 2.172505 ACCCATCGGCACTCATTTCATA 59.827 45.455 0.00 0.00 0.00 2.15
1408 4022 1.625616 CATCGGTGTACCTTCACGAC 58.374 55.000 0.00 0.00 39.00 4.34
1463 4077 3.165087 TCAAAGAACCTCGGGTCTCTA 57.835 47.619 3.58 0.00 33.12 2.43
1473 4087 6.370186 ACCTCGGGTCTCTAAAATAAAACT 57.630 37.500 0.00 0.00 0.00 2.66
1510 4124 0.037326 TGCCGCCTTCCGATATCATC 60.037 55.000 3.12 0.00 40.02 2.92
1584 4198 1.239347 GTTGCAGGGGAGACTTTCAC 58.761 55.000 0.00 0.00 0.00 3.18
1593 4207 0.861837 GAGACTTTCACGGCACACAG 59.138 55.000 0.00 0.00 0.00 3.66
1600 4214 0.324614 TCACGGCACACAGGATCATT 59.675 50.000 0.00 0.00 0.00 2.57
1687 4301 4.023963 CAGCTCGTAACCATCGAAGAGATA 60.024 45.833 0.00 0.00 43.63 1.98
1728 4342 6.815089 AGGCACTTCTCTATTTCATCTACAG 58.185 40.000 0.00 0.00 27.25 2.74
1798 4412 1.810151 GAAATGGTTCGGCACTTGCTA 59.190 47.619 0.38 0.00 41.70 3.49
1918 4532 2.865119 TGGCTGATCAACATCACTGT 57.135 45.000 0.00 0.00 33.80 3.55
1998 4612 0.039035 GTGGCAACCCCTGGTTATGA 59.961 55.000 0.00 0.00 45.01 2.15
2000 4614 1.148027 TGGCAACCCCTGGTTATGAAA 59.852 47.619 0.00 0.00 45.01 2.69
2024 4638 8.519799 AAATCTCAAAAGAAATCGCCCTTATA 57.480 30.769 0.00 0.00 34.49 0.98
2061 4675 3.280295 TGGAGAGGTCTAGTAAGCTTCG 58.720 50.000 0.00 0.00 0.00 3.79
2075 4689 5.874810 AGTAAGCTTCGCAAAACATAGATGA 59.125 36.000 0.00 0.00 0.00 2.92
2079 4693 5.124457 AGCTTCGCAAAACATAGATGAACAT 59.876 36.000 0.00 0.00 0.00 2.71
2097 4711 7.920160 TGAACATCTTGCTGTTACATGAATA 57.080 32.000 0.00 0.00 39.40 1.75
2098 4712 8.510243 TGAACATCTTGCTGTTACATGAATAT 57.490 30.769 0.00 0.00 39.40 1.28
2099 4713 8.959548 TGAACATCTTGCTGTTACATGAATATT 58.040 29.630 0.00 0.00 39.40 1.28
2249 4871 4.574599 AGATCTGTTTTCCTGTTTGTGC 57.425 40.909 0.00 0.00 0.00 4.57
2250 4872 3.953612 AGATCTGTTTTCCTGTTTGTGCA 59.046 39.130 0.00 0.00 0.00 4.57
2251 4873 3.781079 TCTGTTTTCCTGTTTGTGCAG 57.219 42.857 0.00 0.00 36.31 4.41
2298 4920 9.739276 TGACAACCTGAATATATGATTTATCCC 57.261 33.333 0.00 0.00 0.00 3.85
2299 4921 9.178758 GACAACCTGAATATATGATTTATCCCC 57.821 37.037 0.00 0.00 0.00 4.81
2332 4956 9.331282 CAATTTCTCTTCTCCCTAATCGTATTT 57.669 33.333 0.00 0.00 0.00 1.40
2340 4964 9.557338 CTTCTCCCTAATCGTATTTAAGATACG 57.443 37.037 17.03 17.03 46.06 3.06
2373 4998 6.020201 GGAAAACCATTTGTTGTGTCTAAACG 60.020 38.462 0.00 0.00 37.23 3.60
2452 5085 4.274950 CACCACCACGATAAAAACACTCTT 59.725 41.667 0.00 0.00 0.00 2.85
2494 5127 9.132521 GCTATGGTAAAATCATGTTGATATTGC 57.867 33.333 0.00 0.00 35.76 3.56
2598 5379 7.863666 TCCTCACATTGAAATTTTGATTTTGC 58.136 30.769 0.00 0.00 0.00 3.68
2640 5421 3.873910 CCAATGACCGGACTTCTAATGT 58.126 45.455 9.46 0.00 0.00 2.71
2761 5542 1.138266 TGCCGTTAGCCTCATAAGTCC 59.862 52.381 0.00 0.00 42.71 3.85
2881 5662 8.353684 TGCACTAAGTCAAGACTATAATAGCTC 58.646 37.037 2.72 0.00 41.58 4.09
2927 5709 6.753913 TCAGGTTTCTATCTTGCATCCTAT 57.246 37.500 0.00 0.00 0.00 2.57
2966 5748 3.382227 TGCATGTTTCATTCCCTATGCAG 59.618 43.478 0.00 0.00 43.95 4.41
2967 5749 3.243636 GCATGTTTCATTCCCTATGCAGG 60.244 47.826 0.00 0.00 40.30 4.85
2968 5750 2.378038 TGTTTCATTCCCTATGCAGGC 58.622 47.619 0.00 0.00 41.08 4.85
2969 5751 2.291475 TGTTTCATTCCCTATGCAGGCA 60.291 45.455 0.00 0.00 41.08 4.75
2970 5752 2.961062 GTTTCATTCCCTATGCAGGCAT 59.039 45.455 11.94 11.94 41.08 4.40
2971 5753 4.144297 GTTTCATTCCCTATGCAGGCATA 58.856 43.478 12.93 12.93 41.08 3.14
2972 5754 4.662966 TTCATTCCCTATGCAGGCATAT 57.337 40.909 13.85 0.00 41.08 1.78
2973 5755 4.662966 TCATTCCCTATGCAGGCATATT 57.337 40.909 13.85 0.00 41.08 1.28
2974 5756 5.001833 TCATTCCCTATGCAGGCATATTT 57.998 39.130 13.85 0.00 41.08 1.40
2975 5757 5.012239 TCATTCCCTATGCAGGCATATTTC 58.988 41.667 13.85 0.00 41.08 2.17
2976 5758 3.057969 TCCCTATGCAGGCATATTTCG 57.942 47.619 13.85 3.35 41.08 3.46
2977 5759 2.371841 TCCCTATGCAGGCATATTTCGT 59.628 45.455 13.85 0.00 41.08 3.85
2978 5760 3.580895 TCCCTATGCAGGCATATTTCGTA 59.419 43.478 13.85 0.00 41.08 3.43
2979 5761 3.684788 CCCTATGCAGGCATATTTCGTAC 59.315 47.826 13.85 0.00 41.08 3.67
2980 5762 3.684788 CCTATGCAGGCATATTTCGTACC 59.315 47.826 13.85 0.00 38.13 3.34
2981 5763 2.700722 TGCAGGCATATTTCGTACCA 57.299 45.000 0.00 0.00 0.00 3.25
2982 5764 3.207265 TGCAGGCATATTTCGTACCAT 57.793 42.857 0.00 0.00 0.00 3.55
2983 5765 3.138304 TGCAGGCATATTTCGTACCATC 58.862 45.455 0.00 0.00 0.00 3.51
2984 5766 3.181455 TGCAGGCATATTTCGTACCATCT 60.181 43.478 0.00 0.00 0.00 2.90
2985 5767 3.815401 GCAGGCATATTTCGTACCATCTT 59.185 43.478 0.00 0.00 0.00 2.40
2986 5768 4.319766 GCAGGCATATTTCGTACCATCTTG 60.320 45.833 0.00 0.00 0.00 3.02
2987 5769 5.056480 CAGGCATATTTCGTACCATCTTGA 58.944 41.667 0.00 0.00 0.00 3.02
2988 5770 5.527214 CAGGCATATTTCGTACCATCTTGAA 59.473 40.000 0.00 0.00 0.00 2.69
2989 5771 6.205464 CAGGCATATTTCGTACCATCTTGAAT 59.795 38.462 0.00 0.00 0.00 2.57
2990 5772 7.387673 CAGGCATATTTCGTACCATCTTGAATA 59.612 37.037 0.00 0.00 0.00 1.75
2991 5773 8.103305 AGGCATATTTCGTACCATCTTGAATAT 58.897 33.333 0.00 0.00 0.00 1.28
2992 5774 8.177663 GGCATATTTCGTACCATCTTGAATATG 58.822 37.037 0.00 0.00 0.00 1.78
2993 5775 7.693951 GCATATTTCGTACCATCTTGAATATGC 59.306 37.037 17.16 17.16 34.60 3.14
2994 5776 8.720562 CATATTTCGTACCATCTTGAATATGCA 58.279 33.333 0.00 0.00 0.00 3.96
2995 5777 6.993786 TTTCGTACCATCTTGAATATGCAA 57.006 33.333 0.00 0.00 0.00 4.08
2996 5778 7.566760 TTTCGTACCATCTTGAATATGCAAT 57.433 32.000 0.00 0.00 0.00 3.56
2997 5779 6.544038 TCGTACCATCTTGAATATGCAATG 57.456 37.500 0.00 0.00 0.00 2.82
2998 5780 6.054941 TCGTACCATCTTGAATATGCAATGT 58.945 36.000 0.00 0.00 0.00 2.71
2999 5781 6.202762 TCGTACCATCTTGAATATGCAATGTC 59.797 38.462 0.00 0.00 0.00 3.06
3000 5782 6.203530 CGTACCATCTTGAATATGCAATGTCT 59.796 38.462 0.00 0.00 0.00 3.41
3001 5783 7.254898 CGTACCATCTTGAATATGCAATGTCTT 60.255 37.037 0.00 0.00 0.00 3.01
3002 5784 6.802608 ACCATCTTGAATATGCAATGTCTTG 58.197 36.000 0.00 0.00 35.36 3.02
3003 5785 6.379133 ACCATCTTGAATATGCAATGTCTTGT 59.621 34.615 0.00 0.00 34.69 3.16
3004 5786 6.695713 CCATCTTGAATATGCAATGTCTTGTG 59.304 38.462 0.00 0.00 34.69 3.33
3005 5787 5.643664 TCTTGAATATGCAATGTCTTGTGC 58.356 37.500 0.00 0.00 41.29 4.57
3006 5788 5.416639 TCTTGAATATGCAATGTCTTGTGCT 59.583 36.000 0.00 0.00 41.48 4.40
3007 5789 6.598850 TCTTGAATATGCAATGTCTTGTGCTA 59.401 34.615 0.00 0.00 41.48 3.49
3008 5790 6.122850 TGAATATGCAATGTCTTGTGCTAC 57.877 37.500 0.00 0.00 41.48 3.58
3009 5791 5.882000 TGAATATGCAATGTCTTGTGCTACT 59.118 36.000 0.00 0.00 41.48 2.57
3010 5792 7.047271 TGAATATGCAATGTCTTGTGCTACTA 58.953 34.615 0.00 0.00 41.48 1.82
3011 5793 6.851222 ATATGCAATGTCTTGTGCTACTAC 57.149 37.500 0.00 0.00 41.48 2.73
3012 5794 4.271696 TGCAATGTCTTGTGCTACTACT 57.728 40.909 0.00 0.00 41.48 2.57
3013 5795 3.996363 TGCAATGTCTTGTGCTACTACTG 59.004 43.478 0.00 0.00 41.48 2.74
3014 5796 3.181516 GCAATGTCTTGTGCTACTACTGC 60.182 47.826 0.00 0.00 37.78 4.40
3015 5797 2.743636 TGTCTTGTGCTACTACTGCC 57.256 50.000 0.00 0.00 0.00 4.85
3016 5798 2.248248 TGTCTTGTGCTACTACTGCCT 58.752 47.619 0.00 0.00 0.00 4.75
3017 5799 2.029020 TGTCTTGTGCTACTACTGCCTG 60.029 50.000 0.00 0.00 0.00 4.85
3018 5800 1.066858 TCTTGTGCTACTACTGCCTGC 60.067 52.381 0.00 0.00 0.00 4.85
3019 5801 0.036388 TTGTGCTACTACTGCCTGCC 60.036 55.000 0.00 0.00 0.00 4.85
3020 5802 1.191489 TGTGCTACTACTGCCTGCCA 61.191 55.000 0.00 0.00 0.00 4.92
3021 5803 0.179000 GTGCTACTACTGCCTGCCAT 59.821 55.000 0.00 0.00 0.00 4.40
3022 5804 0.178767 TGCTACTACTGCCTGCCATG 59.821 55.000 0.00 0.00 0.00 3.66
3023 5805 0.179000 GCTACTACTGCCTGCCATGT 59.821 55.000 0.00 0.00 0.00 3.21
3024 5806 1.412710 GCTACTACTGCCTGCCATGTA 59.587 52.381 0.00 0.00 0.00 2.29
3025 5807 2.158957 GCTACTACTGCCTGCCATGTAA 60.159 50.000 0.00 0.00 0.00 2.41
3026 5808 3.681594 GCTACTACTGCCTGCCATGTAAA 60.682 47.826 0.00 0.00 0.00 2.01
3027 5809 2.991250 ACTACTGCCTGCCATGTAAAG 58.009 47.619 0.00 0.00 0.00 1.85
3028 5810 2.292267 CTACTGCCTGCCATGTAAAGG 58.708 52.381 0.00 0.00 0.00 3.11
3029 5811 0.698238 ACTGCCTGCCATGTAAAGGA 59.302 50.000 9.20 0.00 32.43 3.36
3030 5812 1.340405 ACTGCCTGCCATGTAAAGGAG 60.340 52.381 9.20 6.61 32.43 3.69
3031 5813 0.034186 TGCCTGCCATGTAAAGGAGG 60.034 55.000 9.20 6.36 32.43 4.30
3032 5814 0.034089 GCCTGCCATGTAAAGGAGGT 60.034 55.000 9.20 0.00 32.43 3.85
3033 5815 2.019156 GCCTGCCATGTAAAGGAGGTC 61.019 57.143 9.20 0.00 32.43 3.85
3034 5816 1.408822 CCTGCCATGTAAAGGAGGTCC 60.409 57.143 0.32 0.00 32.43 4.46
3035 5817 0.623723 TGCCATGTAAAGGAGGTCCC 59.376 55.000 0.00 0.00 36.42 4.46
3036 5818 0.106669 GCCATGTAAAGGAGGTCCCC 60.107 60.000 0.00 0.00 36.42 4.81
3037 5819 0.551396 CCATGTAAAGGAGGTCCCCC 59.449 60.000 0.00 0.00 36.42 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.676091 CTTTTTAAGCCACGCTCCG 57.324 52.632 0.00 0.00 38.25 4.63
22 23 1.405933 GCCTGGCCATGGCTTTTTAAG 60.406 52.381 34.70 20.72 46.38 1.85
24 25 2.285824 GCCTGGCCATGGCTTTTTA 58.714 52.632 34.70 15.63 46.38 1.52
46 47 3.692406 GGCTGACCGTCCCTTCGT 61.692 66.667 0.00 0.00 0.00 3.85
74 75 4.626081 AACTCCTGCCGTTGCGCT 62.626 61.111 9.73 0.00 41.78 5.92
77 78 2.130073 GAACCAACTCCTGCCGTTGC 62.130 60.000 0.00 0.00 40.20 4.17
134 135 0.527385 GCTGACTGATGCGACCTCTC 60.527 60.000 0.00 0.00 0.00 3.20
184 185 0.396139 ATTGAGGCCGGCATTGATGT 60.396 50.000 30.85 4.05 0.00 3.06
192 193 2.639327 AAAGCACATTGAGGCCGGC 61.639 57.895 21.18 21.18 0.00 6.13
201 202 0.904394 ATTCCGGCCCAAAGCACATT 60.904 50.000 0.00 0.00 46.50 2.71
203 204 2.117206 ATTCCGGCCCAAAGCACA 59.883 55.556 0.00 0.00 46.50 4.57
204 205 1.531739 TTCATTCCGGCCCAAAGCAC 61.532 55.000 0.00 0.00 46.50 4.40
209 210 1.381056 CCCATTCATTCCGGCCCAA 60.381 57.895 0.00 0.00 0.00 4.12
212 213 2.521708 CCCCCATTCATTCCGGCC 60.522 66.667 0.00 0.00 0.00 6.13
214 215 2.906897 CGCCCCCATTCATTCCGG 60.907 66.667 0.00 0.00 0.00 5.14
218 219 1.381599 ATGCACGCCCCCATTCATT 60.382 52.632 0.00 0.00 0.00 2.57
228 242 0.449388 CTTTCCTTCTGATGCACGCC 59.551 55.000 0.00 0.00 0.00 5.68
238 252 1.268283 CCCTCCCGAGCTTTCCTTCT 61.268 60.000 0.00 0.00 0.00 2.85
241 255 2.689034 CCCCTCCCGAGCTTTCCT 60.689 66.667 0.00 0.00 0.00 3.36
249 263 3.317436 ATCACTCTGCCCCTCCCGA 62.317 63.158 0.00 0.00 0.00 5.14
259 273 3.194116 CCCATCAAAAACCCATCACTCTG 59.806 47.826 0.00 0.00 0.00 3.35
260 274 3.434309 CCCATCAAAAACCCATCACTCT 58.566 45.455 0.00 0.00 0.00 3.24
262 276 1.901833 GCCCATCAAAAACCCATCACT 59.098 47.619 0.00 0.00 0.00 3.41
267 281 0.835543 CCTGGCCCATCAAAAACCCA 60.836 55.000 0.00 0.00 0.00 4.51
300 315 2.050934 GTCCGGACCGCTCCTAAGT 61.051 63.158 24.75 0.00 33.79 2.24
319 334 1.396996 CGAGTATGAAAGGTTTGCGGG 59.603 52.381 0.00 0.00 0.00 6.13
330 346 2.587956 CAAACCGACGACGAGTATGAA 58.412 47.619 9.28 0.00 42.66 2.57
333 349 0.241749 TGCAAACCGACGACGAGTAT 59.758 50.000 9.28 0.00 42.66 2.12
334 350 0.386352 CTGCAAACCGACGACGAGTA 60.386 55.000 9.28 0.00 42.66 2.59
338 354 2.355363 TCCTGCAAACCGACGACG 60.355 61.111 0.00 0.00 39.43 5.12
339 355 0.599204 TTCTCCTGCAAACCGACGAC 60.599 55.000 0.00 0.00 0.00 4.34
341 357 1.128692 GATTTCTCCTGCAAACCGACG 59.871 52.381 0.00 0.00 0.00 5.12
342 358 1.128692 CGATTTCTCCTGCAAACCGAC 59.871 52.381 0.00 0.00 0.00 4.79
343 359 1.438651 CGATTTCTCCTGCAAACCGA 58.561 50.000 0.00 0.00 0.00 4.69
352 370 0.458025 GTCCGAACGCGATTTCTCCT 60.458 55.000 15.93 0.00 40.82 3.69
377 395 2.285026 CGCCGACATTTATCTGTTCACG 60.285 50.000 0.00 0.00 0.00 4.35
379 397 2.967362 ACGCCGACATTTATCTGTTCA 58.033 42.857 0.00 0.00 0.00 3.18
380 398 3.485216 CCAACGCCGACATTTATCTGTTC 60.485 47.826 0.00 0.00 0.00 3.18
381 399 2.418628 CCAACGCCGACATTTATCTGTT 59.581 45.455 0.00 0.00 0.00 3.16
384 402 2.684001 TCCAACGCCGACATTTATCT 57.316 45.000 0.00 0.00 0.00 1.98
386 404 2.612212 GTCATCCAACGCCGACATTTAT 59.388 45.455 0.00 0.00 0.00 1.40
387 405 2.004017 GTCATCCAACGCCGACATTTA 58.996 47.619 0.00 0.00 0.00 1.40
388 406 0.802494 GTCATCCAACGCCGACATTT 59.198 50.000 0.00 0.00 0.00 2.32
389 407 0.036388 AGTCATCCAACGCCGACATT 60.036 50.000 0.00 0.00 0.00 2.71
423 441 1.071228 GACCGTAAACCTCCCACAACT 59.929 52.381 0.00 0.00 0.00 3.16
426 444 0.682852 CAGACCGTAAACCTCCCACA 59.317 55.000 0.00 0.00 0.00 4.17
441 459 1.452833 GGGCATCTCCAAGGCAGAC 60.453 63.158 0.00 0.00 36.21 3.51
442 460 0.326522 TAGGGCATCTCCAAGGCAGA 60.327 55.000 0.00 0.00 36.21 4.26
443 461 0.548031 TTAGGGCATCTCCAAGGCAG 59.452 55.000 0.00 0.00 36.21 4.85
444 462 0.548031 CTTAGGGCATCTCCAAGGCA 59.452 55.000 0.00 0.00 36.21 4.75
463 2454 5.931724 CACCATTTGTTTTGGATTAGGTTCC 59.068 40.000 0.00 0.00 37.69 3.62
480 2471 5.360591 TGGCGTAATTGTTTTTCACCATTT 58.639 33.333 0.00 0.00 0.00 2.32
568 3172 6.953520 ACATCCCATAAAAACCTCTCAAATCA 59.046 34.615 0.00 0.00 0.00 2.57
604 3208 3.680786 CTGCTCCCCGTGACGTGA 61.681 66.667 3.64 0.00 0.00 4.35
605 3209 2.149803 TAACTGCTCCCCGTGACGTG 62.150 60.000 3.64 0.00 0.00 4.49
606 3210 1.255667 ATAACTGCTCCCCGTGACGT 61.256 55.000 3.64 0.00 0.00 4.34
607 3211 0.806102 CATAACTGCTCCCCGTGACG 60.806 60.000 0.00 0.00 0.00 4.35
608 3212 0.462047 CCATAACTGCTCCCCGTGAC 60.462 60.000 0.00 0.00 0.00 3.67
671 3275 0.109086 ATCTGACTGTTCTCGCACCG 60.109 55.000 0.00 0.00 0.00 4.94
672 3276 2.531206 GTATCTGACTGTTCTCGCACC 58.469 52.381 0.00 0.00 0.00 5.01
673 3277 2.159558 TCGTATCTGACTGTTCTCGCAC 60.160 50.000 0.00 0.00 0.00 5.34
674 3278 2.081462 TCGTATCTGACTGTTCTCGCA 58.919 47.619 0.00 0.00 0.00 5.10
675 3279 2.826979 TCGTATCTGACTGTTCTCGC 57.173 50.000 0.00 0.00 0.00 5.03
676 3280 4.473199 TGTTTCGTATCTGACTGTTCTCG 58.527 43.478 0.00 0.00 0.00 4.04
687 3291 5.008316 GTGGGTCTTTTGTTGTTTCGTATCT 59.992 40.000 0.00 0.00 0.00 1.98
696 3300 1.385528 GGACGTGGGTCTTTTGTTGT 58.614 50.000 0.00 0.00 42.97 3.32
726 3330 4.434520 GAAATCTTAAGGTGAGGAGACGG 58.565 47.826 1.85 0.00 0.00 4.79
732 3339 4.226168 ACCAGAGGAAATCTTAAGGTGAGG 59.774 45.833 1.85 0.00 35.47 3.86
733 3340 5.188751 AGACCAGAGGAAATCTTAAGGTGAG 59.811 44.000 1.85 0.00 35.47 3.51
734 3341 5.094387 AGACCAGAGGAAATCTTAAGGTGA 58.906 41.667 1.85 0.00 35.47 4.02
858 3466 4.150451 GTGAAGAAATTTGAACGCATTGGG 59.850 41.667 0.00 0.00 0.00 4.12
1014 3628 3.392440 GTGCACGTCGACACCGTC 61.392 66.667 17.16 3.43 36.17 4.79
1025 3639 4.368808 CTTTCACCGGCGTGCACG 62.369 66.667 34.01 34.01 40.04 5.34
1032 3646 2.359975 CCCTCCACTTTCACCGGC 60.360 66.667 0.00 0.00 0.00 6.13
1049 3663 0.438830 GATCTTGAACACGTGGACGC 59.561 55.000 21.57 6.39 44.43 5.19
1051 3665 1.068474 CGGATCTTGAACACGTGGAC 58.932 55.000 21.57 13.47 0.00 4.02
1052 3666 0.669318 GCGGATCTTGAACACGTGGA 60.669 55.000 21.57 7.23 0.00 4.02
1053 3667 1.635663 GGCGGATCTTGAACACGTGG 61.636 60.000 21.57 0.90 0.00 4.94
1054 3668 1.787847 GGCGGATCTTGAACACGTG 59.212 57.895 15.48 15.48 0.00 4.49
1063 3677 2.499685 GCTGTACCGGCGGATCTT 59.500 61.111 35.78 13.23 0.00 2.40
1069 3683 2.890474 GTGATGGCTGTACCGGCG 60.890 66.667 0.00 0.00 43.94 6.46
1072 3686 0.744414 CCCTTGTGATGGCTGTACCG 60.744 60.000 0.00 0.00 43.94 4.02
1114 3728 2.045242 GGAAAAGGAGCCGGACCC 60.045 66.667 5.05 4.73 0.00 4.46
1200 3814 1.453155 ACAGCTCCAGGTAAATTGCG 58.547 50.000 0.00 0.00 0.00 4.85
1323 3937 1.200948 GCAAACCTGCTCTCCATGTTC 59.799 52.381 0.00 0.00 45.74 3.18
1408 4022 0.108615 AGTTGATCTTGAGGCCGTCG 60.109 55.000 0.00 0.00 0.00 5.12
1463 4077 7.864770 TCGATTCTAGGGGGTAGTTTTATTTT 58.135 34.615 0.00 0.00 0.00 1.82
1473 4087 1.756690 GCACCTCGATTCTAGGGGGTA 60.757 57.143 8.46 0.00 38.04 3.69
1504 4118 0.673437 TGCCGAGATGCACGATGATA 59.327 50.000 0.00 0.00 36.04 2.15
1510 4124 4.827087 AGCCTGCCGAGATGCACG 62.827 66.667 0.00 0.00 36.04 5.34
1511 4125 3.200593 CAGCCTGCCGAGATGCAC 61.201 66.667 0.00 0.00 36.04 4.57
1512 4126 1.898330 TAACAGCCTGCCGAGATGCA 61.898 55.000 0.00 0.00 39.37 3.96
1573 4187 0.531974 TGTGTGCCGTGAAAGTCTCC 60.532 55.000 0.00 0.00 0.00 3.71
1584 4198 1.293924 GAGAATGATCCTGTGTGCCG 58.706 55.000 0.00 0.00 0.00 5.69
1687 4301 1.612726 GCCTTGAAGACATCAGGCTGT 60.613 52.381 15.27 0.00 43.38 4.40
1711 4325 7.352079 TGCATCACTGTAGATGAAATAGAGA 57.648 36.000 18.18 0.00 46.51 3.10
1726 4340 0.179137 CAGCTGGCAATGCATCACTG 60.179 55.000 7.79 5.01 0.00 3.66
1728 4342 1.518572 GCAGCTGGCAATGCATCAC 60.519 57.895 17.12 0.00 43.97 3.06
1798 4412 2.276116 ATATCGATCCGCGGCCACT 61.276 57.895 23.51 4.40 41.33 4.00
1862 4476 2.933906 CCACGGTCTGCACGTTAATATT 59.066 45.455 0.00 0.00 43.58 1.28
1918 4532 2.621338 CAAGCATCCTTAAGCTCGTCA 58.379 47.619 0.00 0.00 40.90 4.35
1998 4612 5.728637 AGGGCGATTTCTTTTGAGATTTT 57.271 34.783 0.00 0.00 0.00 1.82
2000 4614 8.697507 ATATAAGGGCGATTTCTTTTGAGATT 57.302 30.769 0.00 0.00 0.00 2.40
2015 4629 3.244561 ACATCCACCAAGATATAAGGGCG 60.245 47.826 0.00 0.00 0.00 6.13
2024 4638 4.103785 CCTCTCCAATACATCCACCAAGAT 59.896 45.833 0.00 0.00 0.00 2.40
2061 4675 6.252869 CAGCAAGATGTTCATCTATGTTTTGC 59.747 38.462 18.90 18.90 30.95 3.68
2099 4713 8.746530 TGTAATAGTTACCCACAACAACAAAAA 58.253 29.630 0.00 0.00 35.25 1.94
2104 4718 7.675962 TCATGTAATAGTTACCCACAACAAC 57.324 36.000 0.00 0.00 35.25 3.32
2107 4721 8.732746 AGATTCATGTAATAGTTACCCACAAC 57.267 34.615 0.00 0.00 35.25 3.32
2119 4733 8.744652 GCTAGGCTCTCTAAGATTCATGTAATA 58.255 37.037 0.00 0.00 0.00 0.98
2231 4853 3.781079 CTGCACAAACAGGAAAACAGA 57.219 42.857 0.00 0.00 33.85 3.41
2249 4871 2.549754 CGGATACAAATAGCAAGGCCTG 59.450 50.000 5.69 1.10 0.00 4.85
2250 4872 2.172717 ACGGATACAAATAGCAAGGCCT 59.827 45.455 0.00 0.00 0.00 5.19
2251 4873 2.572290 ACGGATACAAATAGCAAGGCC 58.428 47.619 0.00 0.00 0.00 5.19
2252 4874 3.625764 TCAACGGATACAAATAGCAAGGC 59.374 43.478 0.00 0.00 0.00 4.35
2298 4920 5.070580 AGGGAGAAGAGAAATTGGTATACGG 59.929 44.000 0.00 0.00 0.00 4.02
2299 4921 6.163135 AGGGAGAAGAGAAATTGGTATACG 57.837 41.667 0.00 0.00 0.00 3.06
2332 4956 7.185318 TGGTTTTCCATAGAACCGTATCTTA 57.815 36.000 0.00 0.00 46.55 2.10
2373 4998 6.692486 AGATCCAGGTATCATATTCAACGAC 58.308 40.000 0.00 0.00 0.00 4.34
2411 5036 2.426024 GGTGAGACCGTCATAGCTACAA 59.574 50.000 0.00 0.00 37.56 2.41
2413 5038 2.022195 TGGTGAGACCGTCATAGCTAC 58.978 52.381 0.00 0.00 42.58 3.58
2423 5048 0.528924 TTATCGTGGTGGTGAGACCG 59.471 55.000 0.00 0.00 42.58 4.79
2536 5317 7.868974 TCCGATACTCCAGGAACTATATATGA 58.131 38.462 0.00 0.00 36.02 2.15
2541 5322 4.705507 GCATCCGATACTCCAGGAACTATA 59.294 45.833 0.00 0.00 36.02 1.31
2542 5323 3.511934 GCATCCGATACTCCAGGAACTAT 59.488 47.826 0.00 0.00 36.02 2.12
2543 5324 2.891580 GCATCCGATACTCCAGGAACTA 59.108 50.000 0.00 0.00 36.02 2.24
2544 5325 1.689273 GCATCCGATACTCCAGGAACT 59.311 52.381 0.00 0.00 43.88 3.01
2556 5337 3.520721 TGAGGATATTCATGGCATCCGAT 59.479 43.478 0.00 0.00 42.60 4.18
2598 5379 2.609350 CTTCCCCAAACATGAATTGCG 58.391 47.619 0.00 0.00 0.00 4.85
2674 5455 5.127682 GCCTTGGTGGATATTGTTTTCTGAT 59.872 40.000 0.00 0.00 38.35 2.90
2770 5551 2.026915 AGAAATTGAGCAAATTGCCCCC 60.027 45.455 15.04 5.08 46.52 5.40
2772 5553 5.105063 GTCTAGAAATTGAGCAAATTGCCC 58.895 41.667 15.04 2.87 46.52 5.36
2893 5674 7.440523 AGATAGAAACCTGAACAATTGACAC 57.559 36.000 13.59 3.57 0.00 3.67
2927 5709 8.978564 AAACATGCAAATAACGATGAATAACA 57.021 26.923 0.00 0.00 0.00 2.41
2966 5748 6.560253 ATTCAAGATGGTACGAAATATGCC 57.440 37.500 0.00 0.00 0.00 4.40
2967 5749 7.693951 GCATATTCAAGATGGTACGAAATATGC 59.306 37.037 19.49 19.49 36.43 3.14
2968 5750 8.720562 TGCATATTCAAGATGGTACGAAATATG 58.279 33.333 11.77 11.77 0.00 1.78
2969 5751 8.846943 TGCATATTCAAGATGGTACGAAATAT 57.153 30.769 0.00 0.00 0.00 1.28
2970 5752 8.669946 TTGCATATTCAAGATGGTACGAAATA 57.330 30.769 0.00 0.00 0.00 1.40
2971 5753 7.566760 TTGCATATTCAAGATGGTACGAAAT 57.433 32.000 0.00 0.00 0.00 2.17
2972 5754 6.993786 TTGCATATTCAAGATGGTACGAAA 57.006 33.333 0.00 0.00 0.00 3.46
2973 5755 6.542005 ACATTGCATATTCAAGATGGTACGAA 59.458 34.615 0.00 0.00 0.00 3.85
2974 5756 6.054941 ACATTGCATATTCAAGATGGTACGA 58.945 36.000 0.00 0.00 0.00 3.43
2975 5757 6.203530 AGACATTGCATATTCAAGATGGTACG 59.796 38.462 0.00 0.00 0.00 3.67
2976 5758 7.502120 AGACATTGCATATTCAAGATGGTAC 57.498 36.000 0.00 0.00 0.00 3.34
2977 5759 7.557358 ACAAGACATTGCATATTCAAGATGGTA 59.443 33.333 0.00 0.00 40.27 3.25
2978 5760 6.379133 ACAAGACATTGCATATTCAAGATGGT 59.621 34.615 0.00 0.00 40.27 3.55
2979 5761 6.695713 CACAAGACATTGCATATTCAAGATGG 59.304 38.462 0.00 0.00 40.27 3.51
2980 5762 6.198403 GCACAAGACATTGCATATTCAAGATG 59.802 38.462 0.00 0.00 40.27 2.90
2981 5763 6.096423 AGCACAAGACATTGCATATTCAAGAT 59.904 34.615 0.00 0.00 41.48 2.40
2982 5764 5.416639 AGCACAAGACATTGCATATTCAAGA 59.583 36.000 0.00 0.00 41.48 3.02
2983 5765 5.647589 AGCACAAGACATTGCATATTCAAG 58.352 37.500 0.00 0.00 41.48 3.02
2984 5766 5.648178 AGCACAAGACATTGCATATTCAA 57.352 34.783 0.00 0.00 41.48 2.69
2985 5767 5.882000 AGTAGCACAAGACATTGCATATTCA 59.118 36.000 0.00 0.00 41.48 2.57
2986 5768 6.369059 AGTAGCACAAGACATTGCATATTC 57.631 37.500 0.00 0.00 41.48 1.75
2987 5769 7.011763 CAGTAGTAGCACAAGACATTGCATATT 59.988 37.037 0.00 0.00 41.48 1.28
2988 5770 6.481313 CAGTAGTAGCACAAGACATTGCATAT 59.519 38.462 0.00 0.00 41.48 1.78
2989 5771 5.812127 CAGTAGTAGCACAAGACATTGCATA 59.188 40.000 0.00 0.00 41.48 3.14
2990 5772 4.633126 CAGTAGTAGCACAAGACATTGCAT 59.367 41.667 0.00 0.00 41.48 3.96
2991 5773 3.996363 CAGTAGTAGCACAAGACATTGCA 59.004 43.478 0.00 0.00 41.48 4.08
2992 5774 3.181516 GCAGTAGTAGCACAAGACATTGC 60.182 47.826 0.00 0.00 40.27 3.56
2993 5775 3.372206 GGCAGTAGTAGCACAAGACATTG 59.628 47.826 0.00 0.00 42.46 2.82
2994 5776 3.261897 AGGCAGTAGTAGCACAAGACATT 59.738 43.478 0.00 0.00 0.00 2.71
2995 5777 2.834549 AGGCAGTAGTAGCACAAGACAT 59.165 45.455 0.00 0.00 0.00 3.06
2996 5778 2.029020 CAGGCAGTAGTAGCACAAGACA 60.029 50.000 0.00 0.00 0.00 3.41
2997 5779 2.611518 CAGGCAGTAGTAGCACAAGAC 58.388 52.381 0.00 0.00 0.00 3.01
2998 5780 1.066858 GCAGGCAGTAGTAGCACAAGA 60.067 52.381 0.00 0.00 0.00 3.02
2999 5781 1.363744 GCAGGCAGTAGTAGCACAAG 58.636 55.000 0.00 0.00 0.00 3.16
3000 5782 0.036388 GGCAGGCAGTAGTAGCACAA 60.036 55.000 0.00 0.00 0.00 3.33
3001 5783 1.191489 TGGCAGGCAGTAGTAGCACA 61.191 55.000 0.00 0.00 0.00 4.57
3002 5784 0.179000 ATGGCAGGCAGTAGTAGCAC 59.821 55.000 1.89 0.00 0.00 4.40
3003 5785 0.178767 CATGGCAGGCAGTAGTAGCA 59.821 55.000 1.89 0.00 0.00 3.49
3004 5786 0.179000 ACATGGCAGGCAGTAGTAGC 59.821 55.000 1.89 0.00 0.00 3.58
3005 5787 3.819564 TTACATGGCAGGCAGTAGTAG 57.180 47.619 1.89 0.00 0.00 2.57
3006 5788 3.118408 CCTTTACATGGCAGGCAGTAGTA 60.118 47.826 1.89 2.86 0.00 1.82
3007 5789 2.356125 CCTTTACATGGCAGGCAGTAGT 60.356 50.000 1.89 3.85 0.00 2.73
3008 5790 2.092968 TCCTTTACATGGCAGGCAGTAG 60.093 50.000 1.89 0.00 0.00 2.57
3009 5791 1.912731 TCCTTTACATGGCAGGCAGTA 59.087 47.619 1.89 2.71 0.00 2.74
3010 5792 0.698238 TCCTTTACATGGCAGGCAGT 59.302 50.000 1.89 3.69 0.00 4.40
3011 5793 1.386533 CTCCTTTACATGGCAGGCAG 58.613 55.000 1.89 0.00 0.00 4.85
3012 5794 0.034186 CCTCCTTTACATGGCAGGCA 60.034 55.000 0.00 0.00 0.00 4.75
3013 5795 0.034089 ACCTCCTTTACATGGCAGGC 60.034 55.000 0.00 0.00 0.00 4.85
3014 5796 1.408822 GGACCTCCTTTACATGGCAGG 60.409 57.143 0.00 0.00 0.00 4.85
3015 5797 1.408822 GGGACCTCCTTTACATGGCAG 60.409 57.143 0.00 0.00 35.95 4.85
3016 5798 0.623723 GGGACCTCCTTTACATGGCA 59.376 55.000 0.00 0.00 35.95 4.92
3017 5799 3.496675 GGGACCTCCTTTACATGGC 57.503 57.895 0.00 0.00 35.95 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.