Multiple sequence alignment - TraesCS7B01G049100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G049100 chr7B 100.000 8925 0 0 1 8925 49177191 49186115 0.000000e+00 16482.0
1 TraesCS7B01G049100 chr7B 78.585 1611 257 51 4426 5977 49359623 49361204 0.000000e+00 983.0
2 TraesCS7B01G049100 chr7B 77.242 1617 275 49 4426 5977 49554930 49556518 0.000000e+00 861.0
3 TraesCS7B01G049100 chr7B 82.143 812 133 12 6055 6861 49361462 49362266 0.000000e+00 686.0
4 TraesCS7B01G049100 chr7B 80.899 801 145 7 6055 6851 49612709 49611913 7.610000e-175 625.0
5 TraesCS7B01G049100 chr7B 85.660 523 63 6 8394 8910 49034896 49034380 2.830000e-149 540.0
6 TraesCS7B01G049100 chr7B 75.428 643 134 19 4480 5114 49614451 49613825 3.150000e-74 291.0
7 TraesCS7B01G049100 chr7B 82.917 240 40 1 7410 7648 50680381 50680142 1.950000e-51 215.0
8 TraesCS7B01G049100 chr7B 76.280 371 65 18 1482 1844 50881829 50881474 9.210000e-40 176.0
9 TraesCS7B01G049100 chr7B 98.667 75 1 0 6988 7062 49184118 49184192 5.620000e-27 134.0
10 TraesCS7B01G049100 chr7B 98.667 75 1 0 6928 7002 49184178 49184252 5.620000e-27 134.0
11 TraesCS7B01G049100 chr7D 91.178 2675 160 45 3 2660 95052444 95055059 0.000000e+00 3563.0
12 TraesCS7B01G049100 chr7D 93.901 1951 95 13 6988 8925 95059631 95061570 0.000000e+00 2922.0
13 TraesCS7B01G049100 chr7D 92.586 1686 98 20 4347 6012 95057071 95058749 0.000000e+00 2396.0
14 TraesCS7B01G049100 chr7D 94.243 1077 56 4 2672 3745 95055044 95056117 0.000000e+00 1640.0
15 TraesCS7B01G049100 chr7D 95.005 941 41 4 6068 7002 95058765 95059705 0.000000e+00 1472.0
16 TraesCS7B01G049100 chr7D 78.794 1509 269 38 4448 5925 96084673 96083185 0.000000e+00 966.0
17 TraesCS7B01G049100 chr7D 82.915 837 133 9 6055 6886 95149023 95148192 0.000000e+00 745.0
18 TraesCS7B01G049100 chr7D 83.354 811 112 12 6055 6861 96082883 96082092 0.000000e+00 728.0
19 TraesCS7B01G049100 chr7D 84.100 761 103 13 5263 6012 95150010 95149257 0.000000e+00 719.0
20 TraesCS7B01G049100 chr7D 86.883 648 40 20 3732 4348 95056383 95057016 0.000000e+00 684.0
21 TraesCS7B01G049100 chr7D 87.726 497 40 9 8417 8913 94939985 94939510 2.180000e-155 560.0
22 TraesCS7B01G049100 chr7D 85.380 513 48 9 8410 8913 94797807 94797313 2.880000e-139 507.0
23 TraesCS7B01G049100 chr7D 79.972 709 95 22 2887 3584 96051841 96051169 6.270000e-131 479.0
24 TraesCS7B01G049100 chr7D 76.271 708 138 19 4426 5124 95150879 95150193 5.130000e-92 350.0
25 TraesCS7B01G049100 chr7D 84.825 257 37 2 7410 7665 96030730 96030475 3.200000e-64 257.0
26 TraesCS7B01G049100 chr7D 84.706 255 38 1 7410 7663 95147833 95147579 4.140000e-63 254.0
27 TraesCS7B01G049100 chr7D 85.366 246 32 4 7420 7664 96081707 96081465 1.490000e-62 252.0
28 TraesCS7B01G049100 chr7A 93.043 1840 86 25 4195 6012 98728053 98729872 0.000000e+00 2651.0
29 TraesCS7B01G049100 chr7A 90.010 2022 133 36 2 2012 98723842 98725805 0.000000e+00 2551.0
30 TraesCS7B01G049100 chr7A 92.124 1511 85 18 2672 4163 98726480 98727975 0.000000e+00 2100.0
31 TraesCS7B01G049100 chr7A 94.748 971 43 3 6055 7023 98729949 98730913 0.000000e+00 1504.0
32 TraesCS7B01G049100 chr7A 92.754 1035 49 13 6988 8002 98730824 98731852 0.000000e+00 1472.0
33 TraesCS7B01G049100 chr7A 87.835 970 73 13 7993 8925 98732035 98732996 0.000000e+00 1096.0
34 TraesCS7B01G049100 chr7A 91.966 697 44 7 1971 2660 98725804 98726495 0.000000e+00 966.0
35 TraesCS7B01G049100 chr7A 83.518 813 121 11 6055 6861 99143768 99142963 0.000000e+00 747.0
36 TraesCS7B01G049100 chr7A 88.200 500 53 2 8417 8910 98102876 98102377 7.720000e-165 592.0
37 TraesCS7B01G049100 chr7A 88.000 500 47 4 8417 8910 98548990 98548498 6.010000e-161 579.0
38 TraesCS7B01G049100 chr7A 81.250 704 96 21 2887 3584 99146572 99145899 3.670000e-148 536.0
39 TraesCS7B01G049100 chr7A 74.821 699 145 21 4426 5114 99145591 99144914 4.080000e-73 287.0
40 TraesCS7B01G049100 chr7A 89.286 56 3 1 6958 7013 98730824 98730876 5.780000e-07 67.6
41 TraesCS7B01G049100 chr4B 83.388 1228 120 31 4347 5543 475931608 475932782 0.000000e+00 1061.0
42 TraesCS7B01G049100 chr4A 85.287 802 116 2 6128 6928 621739715 621740515 0.000000e+00 826.0
43 TraesCS7B01G049100 chr4A 87.652 656 80 1 5357 6012 621738808 621739462 0.000000e+00 761.0
44 TraesCS7B01G049100 chr4A 81.299 385 70 2 4464 4847 621737801 621738184 2.420000e-80 311.0
45 TraesCS7B01G049100 chr4A 84.559 272 39 3 7396 7665 621740817 621741087 5.310000e-67 267.0
46 TraesCS7B01G049100 chr5D 85.248 766 107 4 6128 6890 547237622 547236860 0.000000e+00 784.0
47 TraesCS7B01G049100 chr5D 87.273 660 75 7 5357 6012 547238530 547237876 0.000000e+00 745.0
48 TraesCS7B01G049100 chr5B 83.066 874 136 11 6063 6928 690320524 690319655 0.000000e+00 784.0
49 TraesCS7B01G049100 chr5B 86.667 660 79 8 5357 6012 690321464 690320810 0.000000e+00 723.0
50 TraesCS7B01G049100 chr5B 81.481 405 73 2 4444 4847 690322467 690322064 1.860000e-86 331.0
51 TraesCS7B01G049100 chr5B 84.559 272 40 2 7396 7665 690319353 690319082 1.480000e-67 268.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G049100 chr7B 49177191 49186115 8924 False 5583.333333 16482 99.111333 1 8925 3 chr7B.!!$F2 8924
1 TraesCS7B01G049100 chr7B 49554930 49556518 1588 False 861.000000 861 77.242000 4426 5977 1 chr7B.!!$F1 1551
2 TraesCS7B01G049100 chr7B 49359623 49362266 2643 False 834.500000 983 80.364000 4426 6861 2 chr7B.!!$F3 2435
3 TraesCS7B01G049100 chr7B 49034380 49034896 516 True 540.000000 540 85.660000 8394 8910 1 chr7B.!!$R1 516
4 TraesCS7B01G049100 chr7B 49611913 49614451 2538 True 458.000000 625 78.163500 4480 6851 2 chr7B.!!$R4 2371
5 TraesCS7B01G049100 chr7D 95052444 95061570 9126 False 2112.833333 3563 92.299333 3 8925 6 chr7D.!!$F1 8922
6 TraesCS7B01G049100 chr7D 96081465 96084673 3208 True 648.666667 966 82.504667 4448 7664 3 chr7D.!!$R6 3216
7 TraesCS7B01G049100 chr7D 95147579 95150879 3300 True 517.000000 745 81.998000 4426 7663 4 chr7D.!!$R5 3237
8 TraesCS7B01G049100 chr7D 96051169 96051841 672 True 479.000000 479 79.972000 2887 3584 1 chr7D.!!$R4 697
9 TraesCS7B01G049100 chr7A 98723842 98732996 9154 False 1550.950000 2651 91.470750 2 8925 8 chr7A.!!$F1 8923
10 TraesCS7B01G049100 chr7A 99142963 99146572 3609 True 523.333333 747 79.863000 2887 6861 3 chr7A.!!$R3 3974
11 TraesCS7B01G049100 chr4B 475931608 475932782 1174 False 1061.000000 1061 83.388000 4347 5543 1 chr4B.!!$F1 1196
12 TraesCS7B01G049100 chr4A 621737801 621741087 3286 False 541.250000 826 84.699250 4464 7665 4 chr4A.!!$F1 3201
13 TraesCS7B01G049100 chr5D 547236860 547238530 1670 True 764.500000 784 86.260500 5357 6890 2 chr5D.!!$R1 1533
14 TraesCS7B01G049100 chr5B 690319082 690322467 3385 True 526.500000 784 83.943250 4444 7665 4 chr5B.!!$R1 3221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 173 0.738063 AACTTGTCGTGTGTGTGCGA 60.738 50.000 0.00 0.00 34.54 5.10 F
413 415 0.898320 TCAGTCTTAGCTGTCCTGGC 59.102 55.000 0.00 0.00 37.70 4.85 F
611 614 1.290955 CCATGCAAGGCCAACACTG 59.709 57.895 5.01 0.00 0.00 3.66 F
1467 1479 0.531532 CTCTTGGCATAGGCGTGAGG 60.532 60.000 0.00 0.00 42.47 3.86 F
2493 2555 0.040336 TCGTCGCACACTCTCTGTTC 60.040 55.000 0.00 0.00 0.00 3.18 F
3542 3623 0.747283 GCTTCGACCTCTCCGGAGTA 60.747 60.000 30.17 16.19 37.86 2.59 F
3844 4224 0.727398 GAAAATCAGGGAACGCTCCG 59.273 55.000 0.00 0.00 43.51 4.63 F
3845 4225 1.305930 AAAATCAGGGAACGCTCCGC 61.306 55.000 0.00 0.00 43.51 5.54 F
4794 5313 0.322008 GAGAGCAACCCCAACCTCAG 60.322 60.000 0.00 0.00 0.00 3.35 F
6747 7812 0.105658 CAAGACCCCCTCCGAGGATA 60.106 60.000 16.69 0.00 37.67 2.59 F
7687 8786 0.249489 CGAGATCCATCGTTCCCCAC 60.249 60.000 0.00 0.00 37.91 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1056 1062 0.178992 CCACTTGCCAACCTCTCCAA 60.179 55.0 0.00 0.00 0.00 3.53 R
1432 1442 0.935194 AGAGACGGGGGTAATCCTCT 59.065 55.0 0.00 0.00 33.94 3.69 R
2492 2554 0.617935 TGATTCGTTGCTGGGGATGA 59.382 50.0 0.00 0.00 0.00 2.92 R
3055 3128 0.949105 GCCGTTCACAGGATCAACGT 60.949 55.0 12.51 0.00 41.03 3.99 R
3825 4201 0.727398 CGGAGCGTTCCCTGATTTTC 59.273 55.0 13.19 0.00 40.67 2.29 R
4465 4981 0.874175 CGCTGACCACAAGACGAACA 60.874 55.0 0.00 0.00 0.00 3.18 R
4766 5285 1.403687 GGGTTGCTCTCGGCCTCTAT 61.404 60.0 0.00 0.00 40.92 1.98 R
5695 6463 2.185310 AACCTCGATGGGGTGCTGAC 62.185 60.0 0.00 0.00 41.11 3.51 R
6770 7835 0.674895 GCAGGTTGAGGTCGATGCTT 60.675 55.0 0.00 0.00 0.00 3.91 R
7786 8885 1.640428 GGTCGCATGATCGAAACTCA 58.360 50.0 0.00 0.00 40.43 3.41 R
8832 10167 0.462789 ACATCCCGTTCGATGGTACC 59.537 55.0 4.43 4.43 43.34 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 7.436673 AGAAGAATTGCGTATGAGTCTTGTATC 59.563 37.037 0.00 0.00 0.00 2.24
52 53 7.436673 AGAATTGCGTATGAGTCTTGTATCTTC 59.563 37.037 0.00 0.00 0.00 2.87
60 62 9.809096 GTATGAGTCTTGTATCTTCTTTCATCA 57.191 33.333 0.00 0.00 0.00 3.07
105 107 3.006430 TGACATGTTGTACGGTCTCACAT 59.994 43.478 0.00 0.00 0.00 3.21
112 114 2.626266 TGTACGGTCTCACATGAACAGT 59.374 45.455 0.00 1.84 0.00 3.55
113 115 2.440539 ACGGTCTCACATGAACAGTC 57.559 50.000 0.00 0.00 0.00 3.51
131 133 3.134623 CAGTCCTACATATTGCCCACTCA 59.865 47.826 0.00 0.00 0.00 3.41
134 136 2.138320 CTACATATTGCCCACTCAGCG 58.862 52.381 0.00 0.00 0.00 5.18
171 173 0.738063 AACTTGTCGTGTGTGTGCGA 60.738 50.000 0.00 0.00 34.54 5.10
184 186 6.304445 CGTGTGTGTGCGAACAAAATAAATAT 59.696 34.615 0.00 0.00 0.00 1.28
207 209 4.647424 ACTTTTCAATTTCCGTGCTTCA 57.353 36.364 0.00 0.00 0.00 3.02
217 219 3.896648 TCCGTGCTTCAAGATTTTCAC 57.103 42.857 0.00 0.00 0.00 3.18
218 220 3.210227 TCCGTGCTTCAAGATTTTCACA 58.790 40.909 0.00 0.00 0.00 3.58
226 228 7.220300 GTGCTTCAAGATTTTCACATGATGATC 59.780 37.037 0.00 0.00 37.11 2.92
227 229 6.414109 GCTTCAAGATTTTCACATGATGATCG 59.586 38.462 0.00 0.00 37.11 3.69
229 231 7.242914 TCAAGATTTTCACATGATGATCGAG 57.757 36.000 0.00 0.00 37.11 4.04
230 232 6.820152 TCAAGATTTTCACATGATGATCGAGT 59.180 34.615 0.00 0.00 37.11 4.18
231 233 7.335171 TCAAGATTTTCACATGATGATCGAGTT 59.665 33.333 0.00 0.00 37.11 3.01
232 234 7.621428 AGATTTTCACATGATGATCGAGTTT 57.379 32.000 0.00 0.00 37.11 2.66
233 235 7.470079 AGATTTTCACATGATGATCGAGTTTG 58.530 34.615 0.00 0.00 37.11 2.93
234 236 6.799926 TTTTCACATGATGATCGAGTTTGA 57.200 33.333 0.00 0.00 37.11 2.69
236 238 6.990341 TTCACATGATGATCGAGTTTGAAT 57.010 33.333 0.00 0.00 37.11 2.57
238 240 8.491331 TTCACATGATGATCGAGTTTGAATAA 57.509 30.769 0.00 0.00 37.11 1.40
239 241 8.134905 TCACATGATGATCGAGTTTGAATAAG 57.865 34.615 0.00 0.00 29.99 1.73
240 242 7.765819 TCACATGATGATCGAGTTTGAATAAGT 59.234 33.333 0.00 0.00 29.99 2.24
242 244 9.770097 ACATGATGATCGAGTTTGAATAAGTAT 57.230 29.630 0.00 0.00 0.00 2.12
245 247 9.249457 TGATGATCGAGTTTGAATAAGTATGAC 57.751 33.333 0.00 0.00 0.00 3.06
246 248 9.249457 GATGATCGAGTTTGAATAAGTATGACA 57.751 33.333 0.00 0.00 0.00 3.58
247 249 8.407457 TGATCGAGTTTGAATAAGTATGACAC 57.593 34.615 0.00 0.00 0.00 3.67
249 251 7.576750 TCGAGTTTGAATAAGTATGACACAC 57.423 36.000 0.00 0.00 0.00 3.82
250 252 7.375834 TCGAGTTTGAATAAGTATGACACACT 58.624 34.615 0.00 0.00 0.00 3.55
251 253 8.517056 TCGAGTTTGAATAAGTATGACACACTA 58.483 33.333 0.00 0.00 0.00 2.74
252 254 8.584600 CGAGTTTGAATAAGTATGACACACTAC 58.415 37.037 0.00 0.00 0.00 2.73
254 256 9.772973 AGTTTGAATAAGTATGACACACTACAA 57.227 29.630 0.00 0.00 0.00 2.41
280 282 2.274437 TCAGCTGATGATCGAGTTTGC 58.726 47.619 13.74 0.00 31.12 3.68
290 292 7.264947 TGATGATCGAGTTTGCATAAGTAAGA 58.735 34.615 0.00 0.00 0.00 2.10
291 293 7.763985 TGATGATCGAGTTTGCATAAGTAAGAA 59.236 33.333 0.00 0.00 0.00 2.52
300 302 6.737254 TTGCATAAGTAAGAAACAGGCTAC 57.263 37.500 0.00 0.00 0.00 3.58
311 313 6.775594 AGAAACAGGCTACAAAAAGAAAGT 57.224 33.333 0.00 0.00 0.00 2.66
320 322 7.338449 AGGCTACAAAAAGAAAGTAAGACACAA 59.662 33.333 0.00 0.00 0.00 3.33
327 329 9.450807 AAAAAGAAAGTAAGACACAATTCATCG 57.549 29.630 0.00 0.00 31.25 3.84
328 330 7.730364 AAGAAAGTAAGACACAATTCATCGT 57.270 32.000 0.00 0.00 31.25 3.73
369 371 7.235399 AGGACCTGGTTCATGTTCATTTTATTT 59.765 33.333 8.09 0.00 0.00 1.40
396 398 1.354368 GGGAAAGGACCTGGTTCATCA 59.646 52.381 8.09 0.00 0.00 3.07
397 399 2.619074 GGGAAAGGACCTGGTTCATCAG 60.619 54.545 8.09 0.00 34.70 2.90
398 400 2.040412 GGAAAGGACCTGGTTCATCAGT 59.960 50.000 8.09 0.00 33.14 3.41
399 401 3.339141 GAAAGGACCTGGTTCATCAGTC 58.661 50.000 8.09 0.00 33.14 3.51
400 402 2.334006 AGGACCTGGTTCATCAGTCT 57.666 50.000 8.09 0.00 33.14 3.24
413 415 0.898320 TCAGTCTTAGCTGTCCTGGC 59.102 55.000 0.00 0.00 37.70 4.85
485 487 7.636326 CATCAAACGTAACCAAGAGTTAACTT 58.364 34.615 10.02 0.00 42.56 2.66
486 488 8.767085 CATCAAACGTAACCAAGAGTTAACTTA 58.233 33.333 10.02 0.00 42.56 2.24
519 522 9.703892 AACTAATGATCATGCTATCTAAGACAC 57.296 33.333 9.46 0.00 0.00 3.67
529 532 6.209361 TGCTATCTAAGACACGAAGCTAATG 58.791 40.000 0.00 0.00 0.00 1.90
539 542 2.691526 ACGAAGCTAATGGATCGGTGTA 59.308 45.455 8.02 0.00 39.49 2.90
566 569 2.945440 GCACAACAGGATGGCCTTATGA 60.945 50.000 3.32 0.00 43.90 2.15
581 584 2.677573 TATGACGATCGTGCGGCTGG 62.678 60.000 28.12 0.00 40.74 4.85
598 601 4.073200 GCAACACTGCCCCCATGC 62.073 66.667 0.00 0.00 43.26 4.06
599 602 2.601067 CAACACTGCCCCCATGCA 60.601 61.111 0.00 0.00 39.37 3.96
600 603 2.200930 AACACTGCCCCCATGCAA 59.799 55.556 0.00 0.00 41.51 4.08
601 604 1.909781 AACACTGCCCCCATGCAAG 60.910 57.895 0.00 0.00 41.51 4.01
602 605 3.072468 CACTGCCCCCATGCAAGG 61.072 66.667 0.00 0.00 41.51 3.61
607 610 3.393106 CCCCCATGCAAGGCCAAC 61.393 66.667 5.01 0.00 0.00 3.77
608 611 2.604079 CCCCATGCAAGGCCAACA 60.604 61.111 5.01 0.00 0.00 3.33
609 612 2.658422 CCCATGCAAGGCCAACAC 59.342 61.111 5.01 0.00 0.00 3.32
610 613 1.909781 CCCATGCAAGGCCAACACT 60.910 57.895 5.01 0.00 0.00 3.55
611 614 1.290955 CCATGCAAGGCCAACACTG 59.709 57.895 5.01 0.00 0.00 3.66
612 615 1.373748 CATGCAAGGCCAACACTGC 60.374 57.895 5.01 6.17 0.00 4.40
664 667 7.099120 GGAGGAAAACATAATTCATTGTGCTT 58.901 34.615 0.00 0.00 32.89 3.91
665 668 7.063780 GGAGGAAAACATAATTCATTGTGCTTG 59.936 37.037 0.00 0.00 32.89 4.01
690 693 7.093421 TGGATTTGGCAATTGATTACAAGATCA 60.093 33.333 10.34 5.17 39.46 2.92
702 705 3.984508 ACAAGATCACGTAGTATCCCG 57.015 47.619 0.00 0.00 41.61 5.14
731 734 2.071540 CTCGTCGTGTGTCTACTACCA 58.928 52.381 0.00 0.00 0.00 3.25
848 854 2.041686 GCGGTGGGCGGAAAATACA 61.042 57.895 0.00 0.00 0.00 2.29
976 982 2.703536 TCCGAGCATCTATAAAAGGCCA 59.296 45.455 5.01 0.00 0.00 5.36
978 984 3.686726 CCGAGCATCTATAAAAGGCCATC 59.313 47.826 5.01 0.00 0.00 3.51
996 1002 6.332901 AGGCCATCTACCTAGGAAACAAATAT 59.667 38.462 17.98 0.00 35.10 1.28
1056 1062 3.530265 TTACAATACTTCCGCGATGGT 57.470 42.857 8.23 5.29 39.52 3.55
1096 1102 3.439129 GGGGTAGTTCCTTCAAACATTCG 59.561 47.826 0.00 0.00 36.25 3.34
1135 1141 8.830580 CCACTGGTATGAAAACATTCATAGTAG 58.169 37.037 10.63 12.82 42.58 2.57
1149 1155 9.515226 ACATTCATAGTAGTTGGCTTCTTTTTA 57.485 29.630 0.00 0.00 0.00 1.52
1204 1210 8.845413 ATATGAACTTCATGGCTATTCTCTTC 57.155 34.615 13.66 0.00 37.70 2.87
1205 1211 5.431765 TGAACTTCATGGCTATTCTCTTCC 58.568 41.667 0.00 0.00 0.00 3.46
1206 1212 5.190528 TGAACTTCATGGCTATTCTCTTCCT 59.809 40.000 0.00 0.00 0.00 3.36
1207 1213 5.707066 ACTTCATGGCTATTCTCTTCCTT 57.293 39.130 0.00 0.00 0.00 3.36
1208 1214 5.679601 ACTTCATGGCTATTCTCTTCCTTC 58.320 41.667 0.00 0.00 0.00 3.46
1339 1349 4.806640 TTTTTGAGGGATTCATCTTGCC 57.193 40.909 0.00 0.00 35.27 4.52
1423 1433 8.600668 AGATCTATGTAGTGGTACGGTATTCTA 58.399 37.037 0.00 0.00 30.95 2.10
1430 1440 6.549433 AGTGGTACGGTATTCTATTGGAAA 57.451 37.500 0.00 0.00 37.49 3.13
1432 1442 7.396418 AGTGGTACGGTATTCTATTGGAAAAA 58.604 34.615 0.00 0.00 37.49 1.94
1445 1457 3.750501 TGGAAAAAGAGGATTACCCCC 57.249 47.619 0.00 0.00 36.73 5.40
1467 1479 0.531532 CTCTTGGCATAGGCGTGAGG 60.532 60.000 0.00 0.00 42.47 3.86
1722 1734 2.301577 AGATTCTGCTCCGTACAAGC 57.698 50.000 9.71 9.71 40.26 4.01
1754 1766 1.068610 CCACGTGTGTTTTAGGCATGG 60.069 52.381 15.65 0.00 0.00 3.66
1820 1832 6.349611 GGAATCCGCTCCGTACAATATTAGTA 60.350 42.308 0.00 0.00 0.00 1.82
1830 1842 9.139734 TCCGTACAATATTAGTATCCTTTCACT 57.860 33.333 0.00 0.00 0.00 3.41
1840 1852 9.654663 ATTAGTATCCTTTCACTTGTGTAAGAC 57.345 33.333 17.60 10.32 37.36 3.01
1850 1862 4.383052 CACTTGTGTAAGACGTGCTCTAAG 59.617 45.833 0.00 0.00 37.36 2.18
1863 1875 6.153067 ACGTGCTCTAAGAATACATCTATGC 58.847 40.000 0.00 0.00 37.42 3.14
1895 1907 9.806448 TTAATATATAATTTGGCTTCTGCTCCA 57.194 29.630 0.00 0.00 39.59 3.86
1905 1917 3.474600 GCTTCTGCTCCATACATCACAT 58.525 45.455 0.00 0.00 36.03 3.21
1920 1932 6.305272 ACATCACATATATCTCCCCACATC 57.695 41.667 0.00 0.00 0.00 3.06
1938 1950 4.687215 TGTGAGGCAGTGGCGAGC 62.687 66.667 11.51 5.71 42.47 5.03
1945 1957 2.185350 CAGTGGCGAGCCGAAGAT 59.815 61.111 9.78 0.00 39.42 2.40
1948 1960 0.752009 AGTGGCGAGCCGAAGATCTA 60.752 55.000 9.78 0.00 39.42 1.98
1983 1995 7.441157 CGTATGCTCCTATATTGTTTTTCTGGA 59.559 37.037 0.00 0.00 0.00 3.86
1985 1997 5.584649 TGCTCCTATATTGTTTTTCTGGACG 59.415 40.000 0.00 0.00 0.00 4.79
2060 2112 1.678728 CCCAAAGGCGATCTGTTAGCA 60.679 52.381 0.00 0.00 0.00 3.49
2061 2113 2.083774 CCAAAGGCGATCTGTTAGCAA 58.916 47.619 0.00 0.00 0.00 3.91
2127 2180 8.251750 TCGAAATCTTGACTTATTACTTGTGG 57.748 34.615 0.00 0.00 0.00 4.17
2341 2403 0.545646 TGCCCATGGAATCATCGTGA 59.454 50.000 15.22 0.00 0.00 4.35
2395 2457 3.003585 GTCGCACATAAATGATGATGCCA 59.996 43.478 0.00 0.00 38.39 4.92
2396 2458 3.003585 TCGCACATAAATGATGATGCCAC 59.996 43.478 0.00 0.00 38.39 5.01
2491 2553 1.283181 GTCGTCGCACACTCTCTGT 59.717 57.895 0.00 0.00 0.00 3.41
2492 2554 0.317938 GTCGTCGCACACTCTCTGTT 60.318 55.000 0.00 0.00 0.00 3.16
2493 2555 0.040336 TCGTCGCACACTCTCTGTTC 60.040 55.000 0.00 0.00 0.00 3.18
2540 2602 3.888934 TCCGATACGTAATTAACCGAGC 58.111 45.455 0.00 0.00 0.00 5.03
2561 2623 5.590104 GCACCTTTGCGTTAAATTGAAAT 57.410 34.783 0.00 0.00 39.50 2.17
2562 2624 6.698359 GCACCTTTGCGTTAAATTGAAATA 57.302 33.333 0.00 0.00 39.50 1.40
2563 2625 7.289587 GCACCTTTGCGTTAAATTGAAATAT 57.710 32.000 0.00 0.00 39.50 1.28
2564 2626 7.172757 GCACCTTTGCGTTAAATTGAAATATG 58.827 34.615 0.00 0.00 39.50 1.78
2565 2627 7.148656 GCACCTTTGCGTTAAATTGAAATATGT 60.149 33.333 0.00 0.00 39.50 2.29
2568 2630 9.739786 CCTTTGCGTTAAATTGAAATATGTTTC 57.260 29.630 7.91 7.91 43.22 2.78
2667 2729 9.567776 ACTTTAAATAACAAATCTTTTTGGGGG 57.432 29.630 3.76 0.00 45.34 5.40
2723 2785 4.117685 CCGACCCAGTAACTAGTTATTGC 58.882 47.826 25.15 14.77 33.22 3.56
2734 2796 9.680315 AGTAACTAGTTATTGCGTATGATTCTC 57.320 33.333 18.03 0.38 0.00 2.87
2749 2811 9.020813 CGTATGATTCTCTTCTGATTTTCGTAA 57.979 33.333 0.00 0.00 0.00 3.18
2809 2874 6.772770 ACAACAAATAATTTTTGCGTACCC 57.227 33.333 10.89 0.00 32.93 3.69
2833 2898 5.752892 TTTTTATGCAGTACACGTCCAAA 57.247 34.783 0.00 0.00 0.00 3.28
2842 2907 6.596106 TGCAGTACACGTCCAAAATAACATAT 59.404 34.615 0.00 0.00 0.00 1.78
2958 3028 1.819288 AGGTGGCCGAGATATCATACG 59.181 52.381 5.32 7.62 0.00 3.06
3030 3100 1.347817 GAGAGCCAAGTTCGTGAGCG 61.348 60.000 0.00 0.00 39.92 5.03
3228 3309 2.989253 TCTTCTCCGCGCCTGTCA 60.989 61.111 0.00 0.00 0.00 3.58
3275 3356 3.808656 GTCCCCGTCGACGTCCTC 61.809 72.222 33.49 18.36 37.74 3.71
3347 3428 2.809601 GCGATCACCGACAAGCGT 60.810 61.111 0.00 0.00 41.76 5.07
3542 3623 0.747283 GCTTCGACCTCTCCGGAGTA 60.747 60.000 30.17 16.19 37.86 2.59
3570 3654 3.181479 GGTAACGTGTCCATCTAGCATCA 60.181 47.826 0.00 0.00 0.00 3.07
3649 3733 8.867112 ATCTAACATAATTGCTCTGCATTTTG 57.133 30.769 5.26 6.47 38.76 2.44
3657 3741 2.294233 TGCTCTGCATTTTGGTCAAGAC 59.706 45.455 0.00 0.00 31.71 3.01
3689 3773 7.502226 CCCAGCATGTAATATTTCTTCCAAGTA 59.498 37.037 0.00 0.00 0.00 2.24
3713 3799 6.573664 TGCTGTTTATACATTCAAGCAACT 57.426 33.333 0.00 0.00 30.42 3.16
3825 4201 1.618837 TCCGACTTGGAGTGAGGAAAG 59.381 52.381 0.00 0.00 43.74 2.62
3830 4210 4.757149 CGACTTGGAGTGAGGAAAGAAAAT 59.243 41.667 0.00 0.00 0.00 1.82
3844 4224 0.727398 GAAAATCAGGGAACGCTCCG 59.273 55.000 0.00 0.00 43.51 4.63
3845 4225 1.305930 AAAATCAGGGAACGCTCCGC 61.306 55.000 0.00 0.00 43.51 5.54
3846 4226 2.185310 AAATCAGGGAACGCTCCGCT 62.185 55.000 0.00 0.00 43.51 5.52
3847 4227 1.327690 AATCAGGGAACGCTCCGCTA 61.328 55.000 0.00 0.00 43.51 4.26
3849 4229 1.592669 CAGGGAACGCTCCGCTATG 60.593 63.158 0.00 0.00 43.51 2.23
3850 4230 2.280186 GGGAACGCTCCGCTATGG 60.280 66.667 0.00 0.00 43.51 2.74
3866 4246 3.555956 GCTATGGAAAGTGGACGTACATG 59.444 47.826 2.42 0.00 0.00 3.21
3868 4248 3.973206 TGGAAAGTGGACGTACATGAT 57.027 42.857 2.42 0.00 0.00 2.45
3869 4249 3.857052 TGGAAAGTGGACGTACATGATC 58.143 45.455 2.42 2.21 0.00 2.92
3870 4250 3.513912 TGGAAAGTGGACGTACATGATCT 59.486 43.478 2.42 0.00 0.00 2.75
3871 4251 4.020573 TGGAAAGTGGACGTACATGATCTT 60.021 41.667 2.42 0.00 0.00 2.40
3876 4256 5.411781 AGTGGACGTACATGATCTTTCTTC 58.588 41.667 2.42 0.00 0.00 2.87
3889 4269 6.006449 TGATCTTTCTTCCTTCCTTCCTTTG 58.994 40.000 0.00 0.00 0.00 2.77
4090 4475 3.190118 ACTTTTCTTGCATCTGCTAGTGC 59.810 43.478 12.22 0.00 42.89 4.40
4109 4494 1.596603 CCTTGCATGCATATCACCGA 58.403 50.000 23.37 2.30 0.00 4.69
4122 4507 2.448926 TCACCGATTGTCGTTCATGT 57.551 45.000 0.00 0.00 38.40 3.21
4130 4515 6.016192 ACCGATTGTCGTTCATGTATATCTCT 60.016 38.462 0.00 0.00 38.40 3.10
4132 4517 6.524933 CGATTGTCGTTCATGTATATCTCTCC 59.475 42.308 0.00 0.00 34.72 3.71
4172 4557 3.936372 TTTACAGCGTAGAGAGCAGTT 57.064 42.857 0.00 0.00 35.90 3.16
4176 4561 3.082548 ACAGCGTAGAGAGCAGTTTAGA 58.917 45.455 0.00 0.00 37.01 2.10
4177 4562 3.119779 ACAGCGTAGAGAGCAGTTTAGAC 60.120 47.826 0.00 0.00 37.01 2.59
4182 4569 4.329528 CGTAGAGAGCAGTTTAGACTACGT 59.670 45.833 0.12 0.00 43.22 3.57
4193 4624 7.219726 GCAGTTTAGACTACGTAGTAAATCACC 59.780 40.741 27.44 13.45 45.13 4.02
4393 4893 4.928601 TCTTCGTAGTATAAGCACGCATT 58.071 39.130 0.00 0.00 35.70 3.56
4415 4920 9.615295 GCATTTGCATGTTTGAGAATTTTTATT 57.385 25.926 0.00 0.00 41.59 1.40
4465 4981 7.654022 TGTATTTCTTCTTGTTTTTCAGGGT 57.346 32.000 0.00 0.00 0.00 4.34
4737 5254 3.753434 CCGCTCCTCACTCGCTGT 61.753 66.667 0.00 0.00 0.00 4.40
4766 5285 1.246056 ACTCATCGACGTTTCCCGGA 61.246 55.000 0.73 0.00 42.24 5.14
4794 5313 0.322008 GAGAGCAACCCCAACCTCAG 60.322 60.000 0.00 0.00 0.00 3.35
4909 5539 8.757982 TTTTAGTAGATCTATCCGTACTTGGT 57.242 34.615 5.57 0.00 0.00 3.67
5165 5829 6.445357 TGTCAGATATCACTACGTTAGCAA 57.555 37.500 5.32 0.00 0.00 3.91
5326 6062 8.157476 ACTTTATACCATCTTTGTGTTCTCAGT 58.843 33.333 0.00 0.00 0.00 3.41
5340 6076 4.696877 TGTTCTCAGTTGAGCATATGTTGG 59.303 41.667 4.29 0.00 41.80 3.77
5551 6319 0.393077 CCCTTGTGACTTCTCCGTGT 59.607 55.000 0.00 0.00 0.00 4.49
5553 6321 1.867233 CCTTGTGACTTCTCCGTGTTG 59.133 52.381 0.00 0.00 0.00 3.33
5695 6463 0.249784 CATCATGAGGAGCTCCGTGG 60.250 60.000 26.95 17.24 42.08 4.94
5814 6582 5.501715 CGAATGTCCTTACAAAATGATCCG 58.498 41.667 0.00 0.00 39.58 4.18
5883 6651 0.621082 CCCAGGAAAAGAGGGAGTCC 59.379 60.000 0.00 0.00 45.80 3.85
6012 6780 8.358895 TGATAAAATCTTGTCAACTGCATCAAA 58.641 29.630 0.00 0.00 30.52 2.69
6018 6788 6.267817 TCTTGTCAACTGCATCAAAGAAAAG 58.732 36.000 0.00 0.00 0.00 2.27
6021 6791 6.494842 TGTCAACTGCATCAAAGAAAAGTAC 58.505 36.000 0.00 0.00 0.00 2.73
6023 6793 7.497579 TGTCAACTGCATCAAAGAAAAGTACTA 59.502 33.333 0.00 0.00 0.00 1.82
6026 6796 8.725148 CAACTGCATCAAAGAAAAGTACTATCT 58.275 33.333 0.00 0.00 0.00 1.98
6029 6799 7.394016 TGCATCAAAGAAAAGTACTATCTCCA 58.606 34.615 10.59 1.01 0.00 3.86
6033 6803 9.620259 ATCAAAGAAAAGTACTATCTCCATTCC 57.380 33.333 10.59 0.00 0.00 3.01
6035 6805 8.887717 CAAAGAAAAGTACTATCTCCATTCCAG 58.112 37.037 10.59 0.00 0.00 3.86
6036 6806 7.979786 AGAAAAGTACTATCTCCATTCCAGA 57.020 36.000 0.00 0.00 0.00 3.86
6037 6807 7.787028 AGAAAAGTACTATCTCCATTCCAGAC 58.213 38.462 0.00 0.00 0.00 3.51
6038 6808 5.776173 AAGTACTATCTCCATTCCAGACG 57.224 43.478 0.00 0.00 0.00 4.18
6041 6811 5.657302 AGTACTATCTCCATTCCAGACGTTT 59.343 40.000 0.00 0.00 0.00 3.60
6043 6813 3.981071 ATCTCCATTCCAGACGTTTGA 57.019 42.857 7.81 0.00 0.00 2.69
6044 6814 3.762407 TCTCCATTCCAGACGTTTGAA 57.238 42.857 7.81 2.79 0.00 2.69
6045 6815 4.286297 TCTCCATTCCAGACGTTTGAAT 57.714 40.909 7.81 5.10 0.00 2.57
6049 6819 4.346734 CATTCCAGACGTTTGAATGGAG 57.653 45.455 19.62 1.10 42.54 3.86
6052 6822 1.522668 CAGACGTTTGAATGGAGGCA 58.477 50.000 0.00 0.00 0.00 4.75
6053 6823 1.466167 CAGACGTTTGAATGGAGGCAG 59.534 52.381 0.00 0.00 0.00 4.85
6126 7179 8.812329 GTTTGCTGTTGTTGTTGATGTAAATAA 58.188 29.630 0.00 0.00 0.00 1.40
6747 7812 0.105658 CAAGACCCCCTCCGAGGATA 60.106 60.000 16.69 0.00 37.67 2.59
6770 7835 3.240134 GAGGTTCAGTGAGGCGGCA 62.240 63.158 13.08 0.00 0.00 5.69
6863 7928 1.228306 CCAGGCCAACCCGTTTACA 60.228 57.895 5.01 0.00 39.21 2.41
6872 7937 0.464735 ACCCGTTTACACAGCAGCAA 60.465 50.000 0.00 0.00 0.00 3.91
6883 7948 0.520404 CAGCAGCAACCACATCAGTC 59.480 55.000 0.00 0.00 0.00 3.51
6887 7952 2.690778 GCAACCACATCAGTCCGGC 61.691 63.158 0.00 0.00 0.00 6.13
6983 8048 2.354203 GGAGGCGTCTTCTGAAATCACT 60.354 50.000 6.34 0.00 0.00 3.41
6984 8049 2.926838 GAGGCGTCTTCTGAAATCACTC 59.073 50.000 0.00 0.00 0.00 3.51
6985 8050 2.003301 GGCGTCTTCTGAAATCACTCC 58.997 52.381 0.00 0.00 0.00 3.85
6986 8051 2.003301 GCGTCTTCTGAAATCACTCCC 58.997 52.381 0.00 0.00 0.00 4.30
6987 8052 2.263077 CGTCTTCTGAAATCACTCCCG 58.737 52.381 0.00 0.00 0.00 5.14
6988 8053 2.003301 GTCTTCTGAAATCACTCCCGC 58.997 52.381 0.00 0.00 0.00 6.13
6989 8054 1.002366 CTTCTGAAATCACTCCCGCG 58.998 55.000 0.00 0.00 0.00 6.46
6990 8055 0.391130 TTCTGAAATCACTCCCGCGG 60.391 55.000 21.04 21.04 0.00 6.46
6991 8056 2.435938 TGAAATCACTCCCGCGGC 60.436 61.111 22.85 2.61 0.00 6.53
6992 8057 3.564027 GAAATCACTCCCGCGGCG 61.564 66.667 22.85 16.78 0.00 6.46
7007 8072 2.261671 GCGGAGGCGTCTTCTGAA 59.738 61.111 6.34 0.00 0.00 3.02
7008 8073 1.374252 GCGGAGGCGTCTTCTGAAA 60.374 57.895 6.34 0.00 0.00 2.69
7009 8074 0.741221 GCGGAGGCGTCTTCTGAAAT 60.741 55.000 6.34 0.00 0.00 2.17
7010 8075 1.281899 CGGAGGCGTCTTCTGAAATC 58.718 55.000 6.34 0.00 0.00 2.17
7011 8076 1.404181 CGGAGGCGTCTTCTGAAATCA 60.404 52.381 6.34 0.00 0.00 2.57
7012 8077 2.003301 GGAGGCGTCTTCTGAAATCAC 58.997 52.381 6.34 0.00 0.00 3.06
7013 8078 2.354203 GGAGGCGTCTTCTGAAATCACT 60.354 50.000 6.34 0.00 0.00 3.41
7014 8079 2.926838 GAGGCGTCTTCTGAAATCACTC 59.073 50.000 0.00 0.00 0.00 3.51
7015 8080 2.003301 GGCGTCTTCTGAAATCACTCC 58.997 52.381 0.00 0.00 0.00 3.85
7016 8081 2.003301 GCGTCTTCTGAAATCACTCCC 58.997 52.381 0.00 0.00 0.00 4.30
7017 8082 2.263077 CGTCTTCTGAAATCACTCCCG 58.737 52.381 0.00 0.00 0.00 5.14
7018 8083 2.003301 GTCTTCTGAAATCACTCCCGC 58.997 52.381 0.00 0.00 0.00 6.13
7019 8084 1.002366 CTTCTGAAATCACTCCCGCG 58.998 55.000 0.00 0.00 0.00 6.46
7020 8085 0.391130 TTCTGAAATCACTCCCGCGG 60.391 55.000 21.04 21.04 0.00 6.46
7021 8086 2.435938 TGAAATCACTCCCGCGGC 60.436 61.111 22.85 2.61 0.00 6.53
7022 8087 3.564027 GAAATCACTCCCGCGGCG 61.564 66.667 22.85 16.78 0.00 6.46
7037 8102 2.261671 GCGGAGGCGTCTTCTGAA 59.738 61.111 6.34 0.00 0.00 3.02
7038 8103 1.374252 GCGGAGGCGTCTTCTGAAA 60.374 57.895 6.34 0.00 0.00 2.69
7039 8104 0.741221 GCGGAGGCGTCTTCTGAAAT 60.741 55.000 6.34 0.00 0.00 2.17
7040 8105 1.281899 CGGAGGCGTCTTCTGAAATC 58.718 55.000 6.34 0.00 0.00 2.17
7041 8106 1.404181 CGGAGGCGTCTTCTGAAATCA 60.404 52.381 6.34 0.00 0.00 2.57
7042 8107 2.003301 GGAGGCGTCTTCTGAAATCAC 58.997 52.381 6.34 0.00 0.00 3.06
7043 8108 2.354203 GGAGGCGTCTTCTGAAATCACT 60.354 50.000 6.34 0.00 0.00 3.41
7154 8219 3.465296 GATGCGCATGCTGCTGGTC 62.465 63.158 30.76 19.60 42.25 4.02
7471 8563 2.103771 AGTGATGAATGGCTACGATGCT 59.896 45.455 0.00 0.00 0.00 3.79
7597 8689 1.202580 GGGATGGATCTTCACCTGACG 60.203 57.143 0.00 0.00 0.00 4.35
7603 8695 0.250513 ATCTTCACCTGACGAAGCCC 59.749 55.000 0.00 0.00 39.80 5.19
7616 8708 3.358932 AAGCCCATACCCAAGCCGG 62.359 63.158 0.00 0.00 0.00 6.13
7686 8785 1.399744 CCGAGATCCATCGTTCCCCA 61.400 60.000 3.97 0.00 41.12 4.96
7687 8786 0.249489 CGAGATCCATCGTTCCCCAC 60.249 60.000 0.00 0.00 37.91 4.61
7712 8811 1.114842 CGCCGCATGATCAAAAATCG 58.885 50.000 0.00 0.00 0.00 3.34
7772 8871 6.816640 CGGTTATCATCCTAGTCACTGAAAAA 59.183 38.462 0.00 0.00 0.00 1.94
7786 8885 5.071788 TCACTGAAAAACCACCTACATCTCT 59.928 40.000 0.00 0.00 0.00 3.10
7894 8993 6.434028 TCAGGTCAGGTTTATTTCCAGAATTG 59.566 38.462 0.00 0.00 0.00 2.32
7970 9070 4.963276 TTTGAGTTCCAGAGTTTGTGTG 57.037 40.909 0.00 0.00 0.00 3.82
8009 9303 3.629398 CCAGAGTTTGTGTTTTCAGAGCT 59.371 43.478 0.00 0.00 0.00 4.09
8047 9341 2.994186 ATTTGCTTCCATTGCCCATC 57.006 45.000 0.00 0.00 0.00 3.51
8068 9363 3.583086 TCCCAGGAGAAAGAAAGTACAGG 59.417 47.826 0.00 0.00 0.00 4.00
8071 9366 4.757149 CCAGGAGAAAGAAAGTACAGGTTG 59.243 45.833 0.00 0.00 0.00 3.77
8167 9462 6.619852 ACCCATAGGAATAACTGTACCATCTT 59.380 38.462 0.00 0.00 36.73 2.40
8176 9471 9.352191 GAATAACTGTACCATCTTCTCTAGGTA 57.648 37.037 0.00 0.00 35.62 3.08
8430 9759 7.103641 TGACTGATGTCCTTACCACTTTTATC 58.896 38.462 0.00 0.00 42.28 1.75
8475 9804 4.015084 AGTTGCAGCTGCTAGAATTGAAT 58.985 39.130 36.61 10.79 42.66 2.57
8590 9925 4.214332 GTCTTTGGTCTTGTCTCATTCCAC 59.786 45.833 0.00 0.00 0.00 4.02
8591 9926 2.859165 TGGTCTTGTCTCATTCCACC 57.141 50.000 0.00 0.00 0.00 4.61
8592 9927 2.054021 TGGTCTTGTCTCATTCCACCA 58.946 47.619 0.00 0.00 0.00 4.17
8623 9958 2.158827 TGTCTAGAGTTGCTTGCAACCA 60.159 45.455 28.02 17.73 35.79 3.67
8686 10021 2.280628 GGAGCAGCATTGTACTACCAC 58.719 52.381 0.00 0.00 0.00 4.16
8746 10081 2.038295 AGGCTCTCAGAAGGACAAACAG 59.962 50.000 0.00 0.00 0.00 3.16
8828 10163 3.403038 AGCTAGCATCAAGTTTTGTCGT 58.597 40.909 18.83 0.00 0.00 4.34
8832 10167 1.673760 CATCAAGTTTTGTCGTGCCG 58.326 50.000 0.00 0.00 0.00 5.69
8868 10203 0.931702 TGTGCAACGGTAACTTGTCG 59.068 50.000 0.00 0.00 42.39 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.929180 TTCTGTGCATATTATAGTTAGTGGATC 57.071 33.333 0.00 0.00 0.00 3.36
18 19 3.333804 TCATACGCAATTCTTCTGTGCA 58.666 40.909 0.00 0.00 38.19 4.57
24 25 5.786401 ACAAGACTCATACGCAATTCTTC 57.214 39.130 0.00 0.00 0.00 2.87
70 72 7.095649 CGTACAACATGTCACCTATATTCCATG 60.096 40.741 0.00 0.00 36.60 3.66
105 107 3.521531 TGGGCAATATGTAGGACTGTTCA 59.478 43.478 0.00 0.00 0.00 3.18
112 114 2.104792 GCTGAGTGGGCAATATGTAGGA 59.895 50.000 0.00 0.00 0.00 2.94
113 115 2.498167 GCTGAGTGGGCAATATGTAGG 58.502 52.381 0.00 0.00 0.00 3.18
131 133 3.044305 GCGTTCCTCTTGTGCGCT 61.044 61.111 9.73 0.00 44.00 5.92
134 136 0.944311 TTCGAGCGTTCCTCTTGTGC 60.944 55.000 0.00 0.00 38.49 4.57
184 186 6.137794 TGAAGCACGGAAATTGAAAAGTTA 57.862 33.333 0.00 0.00 32.38 2.24
201 203 6.578163 TCATCATGTGAAAATCTTGAAGCA 57.422 33.333 0.00 0.00 32.78 3.91
207 209 7.621428 AACTCGATCATCATGTGAAAATCTT 57.379 32.000 0.00 0.00 40.97 2.40
218 220 9.987272 TCATACTTATTCAAACTCGATCATCAT 57.013 29.630 0.00 0.00 0.00 2.45
226 228 7.582435 AGTGTGTCATACTTATTCAAACTCG 57.418 36.000 0.00 0.00 0.00 4.18
227 229 9.419297 TGTAGTGTGTCATACTTATTCAAACTC 57.581 33.333 7.61 0.00 30.60 3.01
255 257 6.320171 CAAACTCGATCATCAGCTGATTTTT 58.680 36.000 26.70 13.87 44.83 1.94
256 258 5.675575 GCAAACTCGATCATCAGCTGATTTT 60.676 40.000 26.70 18.43 44.83 1.82
257 259 4.201891 GCAAACTCGATCATCAGCTGATTT 60.202 41.667 26.70 16.80 44.83 2.17
258 260 3.311871 GCAAACTCGATCATCAGCTGATT 59.688 43.478 26.70 13.72 44.83 2.57
260 262 2.274437 GCAAACTCGATCATCAGCTGA 58.726 47.619 20.79 20.79 38.53 4.26
261 263 2.004733 TGCAAACTCGATCATCAGCTG 58.995 47.619 7.63 7.63 0.00 4.24
262 264 2.391616 TGCAAACTCGATCATCAGCT 57.608 45.000 0.00 0.00 0.00 4.24
263 265 4.272018 ACTTATGCAAACTCGATCATCAGC 59.728 41.667 0.00 0.00 0.00 4.26
264 266 5.980698 ACTTATGCAAACTCGATCATCAG 57.019 39.130 0.00 0.00 0.00 2.90
265 267 7.264947 TCTTACTTATGCAAACTCGATCATCA 58.735 34.615 0.00 0.00 0.00 3.07
266 268 7.700322 TCTTACTTATGCAAACTCGATCATC 57.300 36.000 0.00 0.00 0.00 2.92
267 269 8.391106 GTTTCTTACTTATGCAAACTCGATCAT 58.609 33.333 0.00 0.00 0.00 2.45
268 270 7.386573 TGTTTCTTACTTATGCAAACTCGATCA 59.613 33.333 0.00 0.00 0.00 2.92
280 282 9.612620 CTTTTTGTAGCCTGTTTCTTACTTATG 57.387 33.333 0.00 0.00 0.00 1.90
290 292 8.188799 GTCTTACTTTCTTTTTGTAGCCTGTTT 58.811 33.333 0.00 0.00 0.00 2.83
291 293 7.338449 TGTCTTACTTTCTTTTTGTAGCCTGTT 59.662 33.333 0.00 0.00 0.00 3.16
369 371 2.246327 ACCAGGTCCTTTCCCTCAAAAA 59.754 45.455 0.00 0.00 0.00 1.94
378 380 3.008485 AGACTGATGAACCAGGTCCTTTC 59.992 47.826 0.00 0.00 38.44 2.62
384 386 3.055530 CAGCTAAGACTGATGAACCAGGT 60.056 47.826 0.00 0.00 40.25 4.00
396 398 1.002544 GTTGCCAGGACAGCTAAGACT 59.997 52.381 0.00 0.00 0.00 3.24
397 399 1.443802 GTTGCCAGGACAGCTAAGAC 58.556 55.000 0.00 0.00 0.00 3.01
398 400 0.037326 CGTTGCCAGGACAGCTAAGA 60.037 55.000 0.00 0.00 0.00 2.10
399 401 1.021390 CCGTTGCCAGGACAGCTAAG 61.021 60.000 0.00 0.00 0.00 2.18
400 402 1.003839 CCGTTGCCAGGACAGCTAA 60.004 57.895 0.00 0.00 0.00 3.09
413 415 4.929808 ACTTATGTTGAACTAGCTCCGTTG 59.070 41.667 6.09 0.00 0.00 4.10
503 505 4.615949 AGCTTCGTGTCTTAGATAGCATG 58.384 43.478 0.00 0.00 0.00 4.06
519 522 2.225068 ACACCGATCCATTAGCTTCG 57.775 50.000 0.00 0.00 0.00 3.79
529 532 1.076332 GTGCAAGTGTACACCGATCC 58.924 55.000 22.28 7.47 0.00 3.36
539 542 1.321474 CCATCCTGTTGTGCAAGTGT 58.679 50.000 0.00 0.00 0.00 3.55
592 595 1.909781 AGTGTTGGCCTTGCATGGG 60.910 57.895 19.47 10.91 0.00 4.00
594 597 1.373748 GCAGTGTTGGCCTTGCATG 60.374 57.895 3.32 0.00 36.59 4.06
595 598 3.053828 GCAGTGTTGGCCTTGCAT 58.946 55.556 3.32 0.00 36.59 3.96
603 606 2.674380 GGGCTGAGGCAGTGTTGG 60.674 66.667 8.68 0.00 40.87 3.77
604 607 3.052082 CGGGCTGAGGCAGTGTTG 61.052 66.667 8.68 0.00 40.87 3.33
612 615 2.270874 ATAGTTTGGGCGGGCTGAGG 62.271 60.000 0.00 0.00 0.00 3.86
613 616 0.394352 AATAGTTTGGGCGGGCTGAG 60.394 55.000 0.00 0.00 0.00 3.35
614 617 0.393808 GAATAGTTTGGGCGGGCTGA 60.394 55.000 0.00 0.00 0.00 4.26
615 618 1.714899 CGAATAGTTTGGGCGGGCTG 61.715 60.000 0.26 0.00 0.00 4.85
616 619 1.451387 CGAATAGTTTGGGCGGGCT 60.451 57.895 0.26 0.00 0.00 5.19
664 667 6.602410 TCTTGTAATCAATTGCCAAATCCA 57.398 33.333 0.00 0.00 32.82 3.41
665 668 7.223387 GTGATCTTGTAATCAATTGCCAAATCC 59.777 37.037 0.00 0.00 37.41 3.01
690 693 5.049818 CGAGATAGAAAACGGGATACTACGT 60.050 44.000 0.00 0.00 46.48 3.57
702 705 4.474113 AGACACACGACGAGATAGAAAAC 58.526 43.478 0.00 0.00 0.00 2.43
731 734 1.001974 TCTAATATCAATGCGCGGCCT 59.998 47.619 8.83 0.00 0.00 5.19
836 842 2.029380 ACTTTTGGCTGTATTTTCCGCC 60.029 45.455 0.00 0.00 42.78 6.13
837 843 2.986479 CACTTTTGGCTGTATTTTCCGC 59.014 45.455 0.00 0.00 0.00 5.54
838 844 3.574614 CCACTTTTGGCTGTATTTTCCG 58.425 45.455 0.00 0.00 35.56 4.30
878 884 0.315568 CCGCCGGTTTTTCAAATCCA 59.684 50.000 1.90 0.00 0.00 3.41
934 940 5.064707 CGGAGGAATACACTTTACACATTGG 59.935 44.000 0.00 0.00 0.00 3.16
976 982 8.778059 TGGTGAATATTTGTTTCCTAGGTAGAT 58.222 33.333 9.08 0.00 0.00 1.98
978 984 8.674607 GTTGGTGAATATTTGTTTCCTAGGTAG 58.325 37.037 9.08 0.00 0.00 3.18
996 1002 6.568869 CAAATCTTTGTTAGGTGTTGGTGAA 58.431 36.000 0.00 0.00 33.59 3.18
1024 1030 9.090692 GCGGAAGTATTGTAAAGTATTCTACAA 57.909 33.333 0.00 0.00 41.08 2.41
1056 1062 0.178992 CCACTTGCCAACCTCTCCAA 60.179 55.000 0.00 0.00 0.00 3.53
1135 1141 7.116805 CCATGAGTTTCATAAAAAGAAGCCAAC 59.883 37.037 0.00 0.00 34.28 3.77
1149 1155 9.520515 AGAACAAGTATTAACCATGAGTTTCAT 57.479 29.630 0.00 0.00 40.05 2.57
1337 1347 3.502211 TCTTTGTTGCACTAAGCTTAGGC 59.498 43.478 31.67 29.00 45.94 3.93
1339 1349 5.673337 TGTCTTTGTTGCACTAAGCTTAG 57.327 39.130 28.16 28.16 45.94 2.18
1393 1403 9.750783 ATACCGTACCACTACATAGATCTATTT 57.249 33.333 12.75 9.45 0.00 1.40
1423 1433 4.620723 GGGGGTAATCCTCTTTTTCCAAT 58.379 43.478 0.00 0.00 33.94 3.16
1430 1440 2.117051 GAGACGGGGGTAATCCTCTTT 58.883 52.381 0.00 0.00 33.94 2.52
1432 1442 0.935194 AGAGACGGGGGTAATCCTCT 59.065 55.000 0.00 0.00 33.94 3.69
1445 1457 1.141881 ACGCCTATGCCAAGAGACG 59.858 57.895 0.00 0.00 0.00 4.18
1509 1521 9.616634 GGAACATATCTATATCGTACGAAACAA 57.383 33.333 23.56 8.67 0.00 2.83
1820 1832 4.750098 CACGTCTTACACAAGTGAAAGGAT 59.250 41.667 7.28 0.00 35.03 3.24
1830 1842 4.841443 TCTTAGAGCACGTCTTACACAA 57.159 40.909 0.00 0.00 36.64 3.33
1839 1851 6.153067 GCATAGATGTATTCTTAGAGCACGT 58.847 40.000 0.00 0.00 35.79 4.49
1840 1852 6.152379 TGCATAGATGTATTCTTAGAGCACG 58.848 40.000 0.00 0.00 35.79 5.34
1895 1907 7.848361 AGATGTGGGGAGATATATGTGATGTAT 59.152 37.037 0.00 0.00 0.00 2.29
1938 1950 3.846360 ACGACAAAAGGTAGATCTTCGG 58.154 45.455 0.00 0.00 0.00 4.30
1945 1957 3.767673 AGGAGCATACGACAAAAGGTAGA 59.232 43.478 0.00 0.00 0.00 2.59
1948 1960 4.755266 ATAGGAGCATACGACAAAAGGT 57.245 40.909 0.00 0.00 0.00 3.50
1983 1995 1.133790 GGTAGATCTAACACACGGCGT 59.866 52.381 13.12 6.77 0.00 5.68
1985 1997 1.479323 TGGGTAGATCTAACACACGGC 59.521 52.381 19.35 1.59 0.00 5.68
2127 2180 5.403466 ACTCGTCTAACGGTAACATTTGTTC 59.597 40.000 0.00 0.00 42.81 3.18
2445 2507 3.423154 CGGTTGGCTTCCACGAGC 61.423 66.667 0.00 0.00 41.96 5.03
2481 2543 1.905215 CTGGGGATGAACAGAGAGTGT 59.095 52.381 0.00 0.00 43.24 3.55
2491 2553 1.004161 TGATTCGTTGCTGGGGATGAA 59.996 47.619 0.00 0.00 0.00 2.57
2492 2554 0.617935 TGATTCGTTGCTGGGGATGA 59.382 50.000 0.00 0.00 0.00 2.92
2493 2555 1.605710 GATGATTCGTTGCTGGGGATG 59.394 52.381 0.00 0.00 0.00 3.51
2540 2602 8.238481 ACATATTTCAATTTAACGCAAAGGTG 57.762 30.769 0.00 0.00 0.00 4.00
2562 2624 8.926710 CACGTTATACAGAGAAAAGAGAAACAT 58.073 33.333 0.00 0.00 0.00 2.71
2563 2625 8.139350 TCACGTTATACAGAGAAAAGAGAAACA 58.861 33.333 0.00 0.00 0.00 2.83
2564 2626 8.516811 TCACGTTATACAGAGAAAAGAGAAAC 57.483 34.615 0.00 0.00 0.00 2.78
2565 2627 9.706691 AATCACGTTATACAGAGAAAAGAGAAA 57.293 29.630 0.00 0.00 0.00 2.52
2602 2664 8.034804 GTGGTTCAAAAAGGAAATGCATATACT 58.965 33.333 0.00 0.00 0.00 2.12
2612 2674 9.114952 GGAAATAATTGTGGTTCAAAAAGGAAA 57.885 29.630 0.00 0.00 39.62 3.13
2674 2736 9.063615 CCCGGCTAGTAATTAAGATTTGTTATT 57.936 33.333 0.00 0.00 0.00 1.40
2675 2737 7.174426 GCCCGGCTAGTAATTAAGATTTGTTAT 59.826 37.037 0.71 0.00 0.00 1.89
2676 2738 6.484308 GCCCGGCTAGTAATTAAGATTTGTTA 59.516 38.462 0.71 0.00 0.00 2.41
2677 2739 5.298527 GCCCGGCTAGTAATTAAGATTTGTT 59.701 40.000 0.71 0.00 0.00 2.83
2678 2740 4.820173 GCCCGGCTAGTAATTAAGATTTGT 59.180 41.667 0.71 0.00 0.00 2.83
2679 2741 4.215613 GGCCCGGCTAGTAATTAAGATTTG 59.784 45.833 9.86 0.00 0.00 2.32
2708 2770 9.680315 GAGAATCATACGCAATAACTAGTTACT 57.320 33.333 17.45 3.88 33.17 2.24
2715 2777 7.492524 TCAGAAGAGAATCATACGCAATAACT 58.507 34.615 0.00 0.00 37.82 2.24
2723 2785 7.456684 ACGAAAATCAGAAGAGAATCATACG 57.543 36.000 0.00 0.00 37.82 3.06
2754 2816 5.639082 TGCGAATATTCATATCAATGCTCGT 59.361 36.000 15.57 0.00 32.76 4.18
2774 2836 9.526713 AAAATTATTTGTTGTATATGCATGCGA 57.473 25.926 14.09 3.55 0.00 5.10
2819 2884 8.192068 TGATATGTTATTTTGGACGTGTACTG 57.808 34.615 0.00 0.00 0.00 2.74
2822 2887 8.444715 GTGTTGATATGTTATTTTGGACGTGTA 58.555 33.333 0.00 0.00 0.00 2.90
2833 2898 5.577554 TGCACGTACGTGTTGATATGTTATT 59.422 36.000 39.56 4.22 46.90 1.40
2842 2907 4.922103 TGTATATTTGCACGTACGTGTTGA 59.078 37.500 39.56 27.98 46.90 3.18
2906 2976 1.535462 GCCAACGCCATGACCATATAC 59.465 52.381 0.00 0.00 0.00 1.47
3030 3100 1.281899 GTGTACCATTCGCTGCTCTC 58.718 55.000 0.00 0.00 0.00 3.20
3055 3128 0.949105 GCCGTTCACAGGATCAACGT 60.949 55.000 12.51 0.00 41.03 3.99
3065 3138 4.612412 GTGGGACGGCCGTTCACA 62.612 66.667 37.75 31.42 34.85 3.58
3104 3177 3.075005 GGTAGGTGCTCCGGCTGA 61.075 66.667 0.00 0.00 39.59 4.26
3105 3178 4.162690 GGGTAGGTGCTCCGGCTG 62.163 72.222 0.00 0.00 39.59 4.85
3106 3179 4.715130 TGGGTAGGTGCTCCGGCT 62.715 66.667 0.00 0.00 39.59 5.52
3228 3309 4.969196 CACGCCGGCAGTGTCACT 62.969 66.667 30.53 0.00 36.98 3.41
3365 3446 1.607148 GCGTCCAAAGGCTTGTAAACT 59.393 47.619 0.00 0.00 33.49 2.66
3542 3623 2.370849 AGATGGACACGTTACCAGGTTT 59.629 45.455 14.40 0.20 39.62 3.27
3570 3654 4.264038 TGCATATATGGATGGCCTGTGATT 60.264 41.667 14.51 0.00 34.31 2.57
3649 3733 3.350219 TGCTGGGATTAAGTCTTGACC 57.650 47.619 0.00 0.00 0.00 4.02
3689 3773 7.031372 CAGTTGCTTGAATGTATAAACAGCAT 58.969 34.615 0.00 0.00 39.49 3.79
3825 4201 0.727398 CGGAGCGTTCCCTGATTTTC 59.273 55.000 13.19 0.00 40.67 2.29
3844 4224 3.241067 TGTACGTCCACTTTCCATAGC 57.759 47.619 0.00 0.00 0.00 2.97
3845 4225 5.006153 TCATGTACGTCCACTTTCCATAG 57.994 43.478 0.00 0.00 0.00 2.23
3846 4226 5.362717 AGATCATGTACGTCCACTTTCCATA 59.637 40.000 0.00 0.00 0.00 2.74
3847 4227 3.973206 TCATGTACGTCCACTTTCCAT 57.027 42.857 0.00 0.00 0.00 3.41
3849 4229 4.124851 AGATCATGTACGTCCACTTTCC 57.875 45.455 0.00 0.00 0.00 3.13
3850 4230 5.869888 AGAAAGATCATGTACGTCCACTTTC 59.130 40.000 19.08 19.08 40.85 2.62
3851 4231 5.794894 AGAAAGATCATGTACGTCCACTTT 58.205 37.500 0.00 0.00 0.00 2.66
3852 4232 5.407407 AGAAAGATCATGTACGTCCACTT 57.593 39.130 0.00 0.00 0.00 3.16
3854 4234 4.567159 GGAAGAAAGATCATGTACGTCCAC 59.433 45.833 0.00 0.00 0.00 4.02
3855 4235 4.466370 AGGAAGAAAGATCATGTACGTCCA 59.534 41.667 0.00 0.00 0.00 4.02
3857 4237 5.520649 GGAAGGAAGAAAGATCATGTACGTC 59.479 44.000 0.00 0.00 0.00 4.34
3866 4246 5.417266 CCAAAGGAAGGAAGGAAGAAAGATC 59.583 44.000 0.00 0.00 0.00 2.75
3868 4248 4.729868 CCAAAGGAAGGAAGGAAGAAAGA 58.270 43.478 0.00 0.00 0.00 2.52
3869 4249 3.256879 GCCAAAGGAAGGAAGGAAGAAAG 59.743 47.826 0.00 0.00 0.00 2.62
3870 4250 3.230976 GCCAAAGGAAGGAAGGAAGAAA 58.769 45.455 0.00 0.00 0.00 2.52
3871 4251 2.176798 TGCCAAAGGAAGGAAGGAAGAA 59.823 45.455 0.00 0.00 0.00 2.52
3876 4256 1.928868 ACATGCCAAAGGAAGGAAGG 58.071 50.000 0.00 0.00 0.00 3.46
3924 4305 8.491045 AAGATTTTCTTCCTAATTTTGGGACA 57.509 30.769 0.00 0.00 37.57 4.02
4090 4475 1.596603 TCGGTGATATGCATGCAAGG 58.403 50.000 26.68 8.84 0.00 3.61
4109 4494 7.231519 TGAGGAGAGATATACATGAACGACAAT 59.768 37.037 0.00 0.00 0.00 2.71
4122 4507 7.423844 TGCAAAAGAACTGAGGAGAGATATA 57.576 36.000 0.00 0.00 0.00 0.86
4130 4515 9.691362 GTAAATAAATTGCAAAAGAACTGAGGA 57.309 29.630 1.71 0.00 0.00 3.71
4172 4557 8.959548 TCAATGGTGATTTACTACGTAGTCTAA 58.040 33.333 30.53 24.00 43.93 2.10
4176 4561 8.092687 AGTTTCAATGGTGATTTACTACGTAGT 58.907 33.333 29.62 29.62 37.98 2.73
4177 4562 8.380644 CAGTTTCAATGGTGATTTACTACGTAG 58.619 37.037 20.97 20.97 32.48 3.51
4182 4569 9.739276 AAGATCAGTTTCAATGGTGATTTACTA 57.261 29.630 0.00 0.00 32.48 1.82
4193 4624 4.679662 GGATGGCAAGATCAGTTTCAATG 58.320 43.478 0.00 0.00 0.00 2.82
4248 4686 3.181461 CCTGGTCGGAGAATTATCAAGCT 60.181 47.826 1.97 0.00 39.69 3.74
4250 4692 3.134458 GCCTGGTCGGAGAATTATCAAG 58.866 50.000 1.97 0.00 39.69 3.02
4312 4754 5.815233 TGTTTCCATGGCCTTTATCAAAA 57.185 34.783 6.96 0.00 0.00 2.44
4313 4755 5.512232 GGTTGTTTCCATGGCCTTTATCAAA 60.512 40.000 6.96 0.00 0.00 2.69
4314 4756 4.020662 GGTTGTTTCCATGGCCTTTATCAA 60.021 41.667 6.96 2.90 0.00 2.57
4315 4757 3.513515 GGTTGTTTCCATGGCCTTTATCA 59.486 43.478 6.96 0.00 0.00 2.15
4340 4782 4.939509 TTTTTATCAAGAGGCTGTACGC 57.060 40.909 0.00 1.72 38.13 4.42
4393 4893 7.935755 TCCCAATAAAAATTCTCAAACATGCAA 59.064 29.630 0.00 0.00 0.00 4.08
4415 4920 2.429610 GAGATACTTGTTAGCCGTCCCA 59.570 50.000 0.00 0.00 0.00 4.37
4465 4981 0.874175 CGCTGACCACAAGACGAACA 60.874 55.000 0.00 0.00 0.00 3.18
4609 5126 4.124943 TCTAGAGCCGCCTCCCGT 62.125 66.667 0.00 0.00 38.96 5.28
4636 5153 2.125350 GCCTCCTTCTGCCTCACG 60.125 66.667 0.00 0.00 0.00 4.35
4737 5254 2.547026 TCGATGAGTCCAACGACGA 58.453 52.632 0.00 0.00 41.57 4.20
4766 5285 1.403687 GGGTTGCTCTCGGCCTCTAT 61.404 60.000 0.00 0.00 40.92 1.98
4794 5313 4.202121 TGTTCATCTGGTCGAGGTTATAGC 60.202 45.833 0.00 0.00 0.00 2.97
4984 5618 4.771903 TGCACACTTCTACACCTAAAACA 58.228 39.130 0.00 0.00 0.00 2.83
5157 5821 8.715088 ACTTTATAAGTTTACTGGTTGCTAACG 58.285 33.333 0.00 0.00 39.04 3.18
5288 5973 8.893563 AGATGGTATAAAGTTCATTTTTGGGA 57.106 30.769 0.00 0.00 32.01 4.37
5569 6337 2.796483 ATACGCTTGCAGTCGCCCAA 62.796 55.000 9.19 0.00 37.32 4.12
5695 6463 2.185310 AACCTCGATGGGGTGCTGAC 62.185 60.000 0.00 0.00 41.11 3.51
5729 6497 2.513897 GAAAGATCCCACCCGCGG 60.514 66.667 21.04 21.04 0.00 6.46
5814 6582 6.856426 CCTCAAAGTAAAACTCAACCGAATTC 59.144 38.462 0.00 0.00 0.00 2.17
5988 6756 8.579006 TCTTTGATGCAGTTGACAAGATTTTAT 58.421 29.630 0.00 0.00 0.00 1.40
6012 6780 7.416890 CGTCTGGAATGGAGATAGTACTTTTCT 60.417 40.741 0.00 4.07 0.00 2.52
6018 6788 5.517322 AACGTCTGGAATGGAGATAGTAC 57.483 43.478 0.00 0.00 0.00 2.73
6021 6791 5.011090 TCAAACGTCTGGAATGGAGATAG 57.989 43.478 0.00 0.00 0.00 2.08
6023 6793 3.981071 TCAAACGTCTGGAATGGAGAT 57.019 42.857 0.00 0.00 0.00 2.75
6029 6799 3.347216 CCTCCATTCAAACGTCTGGAAT 58.653 45.455 0.00 0.00 37.34 3.01
6032 6802 0.804989 GCCTCCATTCAAACGTCTGG 59.195 55.000 0.00 0.00 0.00 3.86
6033 6803 1.466167 CTGCCTCCATTCAAACGTCTG 59.534 52.381 0.00 0.00 0.00 3.51
6035 6805 1.523758 ACTGCCTCCATTCAAACGTC 58.476 50.000 0.00 0.00 0.00 4.34
6036 6806 2.851263 TACTGCCTCCATTCAAACGT 57.149 45.000 0.00 0.00 0.00 3.99
6037 6807 6.377327 AAATATACTGCCTCCATTCAAACG 57.623 37.500 0.00 0.00 0.00 3.60
6038 6808 8.250332 TGAAAAATATACTGCCTCCATTCAAAC 58.750 33.333 0.00 0.00 0.00 2.93
6041 6811 7.118723 AGTGAAAAATATACTGCCTCCATTCA 58.881 34.615 0.00 0.00 0.00 2.57
6043 6813 9.646522 ATTAGTGAAAAATATACTGCCTCCATT 57.353 29.630 0.00 0.00 0.00 3.16
6044 6814 9.071276 CATTAGTGAAAAATATACTGCCTCCAT 57.929 33.333 0.00 0.00 0.00 3.41
6045 6815 8.052748 ACATTAGTGAAAAATATACTGCCTCCA 58.947 33.333 0.00 0.00 0.00 3.86
6126 7179 1.702957 TCCTCCCATCAAACGAACCTT 59.297 47.619 0.00 0.00 0.00 3.50
6338 7391 1.272490 CATGTATACAGGATCCGGCGT 59.728 52.381 12.10 10.47 0.00 5.68
6499 7552 1.265568 CGTCGTAATGTTGGAGTCGG 58.734 55.000 0.00 0.00 0.00 4.79
6680 7745 1.748122 CGCCTGCTGCTTGATCCTT 60.748 57.895 0.00 0.00 38.05 3.36
6747 7812 0.908198 GCCTCACTGAACCTCCTCAT 59.092 55.000 0.00 0.00 0.00 2.90
6770 7835 0.674895 GCAGGTTGAGGTCGATGCTT 60.675 55.000 0.00 0.00 0.00 3.91
6819 7884 2.168106 CTCTCATGACCTGGAGGAGTTG 59.832 54.545 0.00 0.00 38.94 3.16
6863 7928 0.179009 ACTGATGTGGTTGCTGCTGT 60.179 50.000 0.00 0.00 0.00 4.40
6872 7937 2.347490 GTGCCGGACTGATGTGGT 59.653 61.111 5.05 0.00 0.00 4.16
6887 7952 0.109597 GCAGTTCTTTCATGGCCGTG 60.110 55.000 19.62 19.62 0.00 4.94
6890 7955 1.508088 CGGCAGTTCTTTCATGGCC 59.492 57.895 0.00 0.00 36.22 5.36
6989 8054 2.781595 TTTCAGAAGACGCCTCCGCC 62.782 60.000 0.00 0.00 38.22 6.13
6990 8055 0.741221 ATTTCAGAAGACGCCTCCGC 60.741 55.000 0.00 0.00 38.22 5.54
6991 8056 1.281899 GATTTCAGAAGACGCCTCCG 58.718 55.000 0.00 0.00 41.14 4.63
6992 8057 2.003301 GTGATTTCAGAAGACGCCTCC 58.997 52.381 0.00 0.00 0.00 4.30
6993 8058 2.926838 GAGTGATTTCAGAAGACGCCTC 59.073 50.000 0.00 0.00 0.00 4.70
6994 8059 2.354203 GGAGTGATTTCAGAAGACGCCT 60.354 50.000 0.00 0.00 0.00 5.52
6995 8060 2.003301 GGAGTGATTTCAGAAGACGCC 58.997 52.381 0.00 0.00 0.00 5.68
6996 8061 2.003301 GGGAGTGATTTCAGAAGACGC 58.997 52.381 0.00 0.00 0.00 5.19
6997 8062 2.263077 CGGGAGTGATTTCAGAAGACG 58.737 52.381 0.00 0.00 0.00 4.18
6998 8063 2.003301 GCGGGAGTGATTTCAGAAGAC 58.997 52.381 0.00 0.00 0.00 3.01
6999 8064 1.404181 CGCGGGAGTGATTTCAGAAGA 60.404 52.381 0.00 0.00 44.85 2.87
7000 8065 1.002366 CGCGGGAGTGATTTCAGAAG 58.998 55.000 0.00 0.00 44.85 2.85
7001 8066 0.391130 CCGCGGGAGTGATTTCAGAA 60.391 55.000 20.10 0.00 44.85 3.02
7002 8067 1.218047 CCGCGGGAGTGATTTCAGA 59.782 57.895 20.10 0.00 44.85 3.27
7003 8068 2.464459 GCCGCGGGAGTGATTTCAG 61.464 63.158 29.38 0.00 44.85 3.02
7004 8069 2.435938 GCCGCGGGAGTGATTTCA 60.436 61.111 29.38 0.00 44.85 2.69
7005 8070 3.564027 CGCCGCGGGAGTGATTTC 61.564 66.667 29.38 5.29 44.85 2.17
7019 8084 2.781595 TTTCAGAAGACGCCTCCGCC 62.782 60.000 0.00 0.00 38.22 6.13
7020 8085 0.741221 ATTTCAGAAGACGCCTCCGC 60.741 55.000 0.00 0.00 38.22 5.54
7021 8086 1.281899 GATTTCAGAAGACGCCTCCG 58.718 55.000 0.00 0.00 41.14 4.63
7022 8087 2.003301 GTGATTTCAGAAGACGCCTCC 58.997 52.381 0.00 0.00 0.00 4.30
7023 8088 2.926838 GAGTGATTTCAGAAGACGCCTC 59.073 50.000 0.00 0.00 0.00 4.70
7024 8089 2.354203 GGAGTGATTTCAGAAGACGCCT 60.354 50.000 0.00 0.00 0.00 5.52
7025 8090 2.003301 GGAGTGATTTCAGAAGACGCC 58.997 52.381 0.00 0.00 0.00 5.68
7026 8091 2.003301 GGGAGTGATTTCAGAAGACGC 58.997 52.381 0.00 0.00 0.00 5.19
7027 8092 2.263077 CGGGAGTGATTTCAGAAGACG 58.737 52.381 0.00 0.00 0.00 4.18
7028 8093 2.003301 GCGGGAGTGATTTCAGAAGAC 58.997 52.381 0.00 0.00 0.00 3.01
7029 8094 1.404181 CGCGGGAGTGATTTCAGAAGA 60.404 52.381 0.00 0.00 44.85 2.87
7030 8095 1.002366 CGCGGGAGTGATTTCAGAAG 58.998 55.000 0.00 0.00 44.85 2.85
7031 8096 0.391130 CCGCGGGAGTGATTTCAGAA 60.391 55.000 20.10 0.00 44.85 3.02
7032 8097 1.218047 CCGCGGGAGTGATTTCAGA 59.782 57.895 20.10 0.00 44.85 3.27
7033 8098 2.464459 GCCGCGGGAGTGATTTCAG 61.464 63.158 29.38 0.00 44.85 3.02
7034 8099 2.435938 GCCGCGGGAGTGATTTCA 60.436 61.111 29.38 0.00 44.85 2.69
7035 8100 3.564027 CGCCGCGGGAGTGATTTC 61.564 66.667 29.38 5.29 44.85 2.17
7597 8689 1.823899 CGGCTTGGGTATGGGCTTC 60.824 63.158 0.00 0.00 0.00 3.86
7603 8695 1.785041 CGATTGCCGGCTTGGGTATG 61.785 60.000 29.70 5.35 38.63 2.39
7674 8766 2.590092 GGGAGTGGGGAACGATGG 59.410 66.667 0.00 0.00 0.00 3.51
7676 8768 2.691252 GGGGGAGTGGGGAACGAT 60.691 66.667 0.00 0.00 0.00 3.73
7687 8786 4.996434 GATCATGCGGCGGGGGAG 62.996 72.222 9.78 0.00 0.00 4.30
7695 8794 3.950087 TCTCGATTTTTGATCATGCGG 57.050 42.857 0.00 0.00 0.00 5.69
7712 8811 5.801380 TGAAAAACCACCTACACCTATCTC 58.199 41.667 0.00 0.00 0.00 2.75
7748 8847 7.065923 GGTTTTTCAGTGACTAGGATGATAACC 59.934 40.741 0.00 6.23 33.47 2.85
7772 8871 3.193691 CGAAACTCAGAGATGTAGGTGGT 59.806 47.826 3.79 0.00 0.00 4.16
7786 8885 1.640428 GGTCGCATGATCGAAACTCA 58.360 50.000 0.00 0.00 40.43 3.41
7814 8913 6.344572 TGCTAAATGCTACAAACTACGATG 57.655 37.500 0.00 0.00 43.37 3.84
8009 9303 6.710295 AGCAAATATATGGCGTCTAATCACAA 59.290 34.615 0.00 0.00 0.00 3.33
8047 9341 3.328050 ACCTGTACTTTCTTTCTCCTGGG 59.672 47.826 0.00 0.00 0.00 4.45
8068 9363 3.429410 GGGATTTCATGGCTTGTAGCAAC 60.429 47.826 0.67 0.00 44.75 4.17
8071 9366 2.659428 AGGGATTTCATGGCTTGTAGC 58.341 47.619 0.00 0.00 41.46 3.58
8162 9457 7.001674 AGTCCACTACATACCTAGAGAAGATG 58.998 42.308 0.00 0.00 0.00 2.90
8167 9462 5.221884 GGCTAGTCCACTACATACCTAGAGA 60.222 48.000 0.00 0.00 34.01 3.10
8176 9471 9.603189 AGTAATATTTAGGCTAGTCCACTACAT 57.397 33.333 0.00 0.04 37.29 2.29
8430 9759 6.152323 ACTTTGATGGTCTTCTCAATTCCATG 59.848 38.462 0.00 0.00 38.74 3.66
8475 9804 2.005606 TTCCAAAGCTGCAGGGTGGA 62.006 55.000 17.12 5.98 36.59 4.02
8590 9925 5.931146 GCAACTCTAGACATAGAATGGATGG 59.069 44.000 0.00 0.00 37.58 3.51
8591 9926 6.757237 AGCAACTCTAGACATAGAATGGATG 58.243 40.000 0.00 0.00 37.58 3.51
8592 9927 6.992664 AGCAACTCTAGACATAGAATGGAT 57.007 37.500 0.00 0.00 37.58 3.41
8623 9958 8.491331 AAACATTCAAAATACTTGCAGTTTGT 57.509 26.923 0.00 0.00 35.54 2.83
8647 9982 2.177016 TCCCTCCTCATGATACCGAGAA 59.823 50.000 0.00 0.00 0.00 2.87
8649 9984 2.166829 CTCCCTCCTCATGATACCGAG 58.833 57.143 0.00 0.00 0.00 4.63
8746 10081 4.759516 TTTCGGAAAGAATGGCTGTTAC 57.240 40.909 0.00 0.00 38.86 2.50
8828 10163 2.182284 CGTTCGATGGTACCGGCA 59.818 61.111 7.57 0.00 0.00 5.69
8832 10167 0.462789 ACATCCCGTTCGATGGTACC 59.537 55.000 4.43 4.43 43.34 3.34
8868 10203 4.082571 CCAATCAGTGATGGGTTTTCTGTC 60.083 45.833 17.52 0.00 28.83 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.