Multiple sequence alignment - TraesCS7B01G048100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G048100 chr7B 100.000 2580 0 0 1 2580 47736267 47738846 0.000000e+00 4765.0
1 TraesCS7B01G048100 chr7A 88.676 1934 123 39 1 1865 97265920 97267826 0.000000e+00 2270.0
2 TraesCS7B01G048100 chr7D 91.978 1259 62 14 705 1939 94005255 94006498 0.000000e+00 1729.0
3 TraesCS7B01G048100 chr7D 90.571 1156 66 22 804 1939 93949573 93948441 0.000000e+00 1491.0
4 TraesCS7B01G048100 chr7D 81.329 557 43 24 2035 2580 94006637 94007143 1.860000e-106 396.0
5 TraesCS7B01G048100 chr7D 82.581 310 30 10 154 460 93950969 93950681 4.260000e-63 252.0
6 TraesCS7B01G048100 chr6A 74.286 630 100 44 999 1581 591381201 591380587 2.600000e-50 209.0
7 TraesCS7B01G048100 chr6B 79.470 302 44 15 999 1284 668030021 668029722 5.630000e-47 198.0
8 TraesCS7B01G048100 chr6B 87.500 96 7 3 999 1089 668136659 668136564 3.510000e-19 106.0
9 TraesCS7B01G048100 chr6D 90.517 116 11 0 1169 1284 443741149 443741034 1.240000e-33 154.0
10 TraesCS7B01G048100 chr6D 95.604 91 4 0 999 1089 443741354 443741264 2.070000e-31 147.0
11 TraesCS7B01G048100 chr6D 88.660 97 5 4 999 1089 443754010 443753914 2.100000e-21 113.0
12 TraesCS7B01G048100 chr2B 89.474 76 8 0 1015 1090 726545804 726545879 2.110000e-16 97.1
13 TraesCS7B01G048100 chr2B 94.000 50 1 2 565 613 496110919 496110967 9.900000e-10 75.0
14 TraesCS7B01G048100 chr5A 88.732 71 8 0 2148 2218 668224075 668224005 1.270000e-13 87.9
15 TraesCS7B01G048100 chr5A 92.000 50 4 0 560 609 600351467 600351418 1.280000e-08 71.3
16 TraesCS7B01G048100 chr4B 96.154 52 2 0 560 611 14402482 14402533 4.570000e-13 86.1
17 TraesCS7B01G048100 chr3D 94.118 51 3 0 561 611 582372005 582371955 7.650000e-11 78.7
18 TraesCS7B01G048100 chr4A 93.878 49 3 0 561 609 666434844 666434796 9.900000e-10 75.0
19 TraesCS7B01G048100 chr4A 92.453 53 3 1 561 613 732375830 732375881 9.900000e-10 75.0
20 TraesCS7B01G048100 chr3A 92.308 52 3 1 560 610 424454774 424454723 3.560000e-09 73.1
21 TraesCS7B01G048100 chr1A 92.157 51 3 1 560 609 237513211 237513261 1.280000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G048100 chr7B 47736267 47738846 2579 False 4765.0 4765 100.0000 1 2580 1 chr7B.!!$F1 2579
1 TraesCS7B01G048100 chr7A 97265920 97267826 1906 False 2270.0 2270 88.6760 1 1865 1 chr7A.!!$F1 1864
2 TraesCS7B01G048100 chr7D 94005255 94007143 1888 False 1062.5 1729 86.6535 705 2580 2 chr7D.!!$F1 1875
3 TraesCS7B01G048100 chr7D 93948441 93950969 2528 True 871.5 1491 86.5760 154 1939 2 chr7D.!!$R1 1785
4 TraesCS7B01G048100 chr6A 591380587 591381201 614 True 209.0 209 74.2860 999 1581 1 chr6A.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 531 1.812571 AGTGCTAGCAAACCGATTTGG 59.187 47.619 21.29 0.0 44.64 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 3235 0.515564 ATTCGCCCGAAGAAAACACG 59.484 50.0 9.11 0.0 37.56 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.452078 TCCCAAATCAGACACAAATCAAC 57.548 39.130 0.00 0.00 0.00 3.18
57 63 2.541588 CCCAATGCCGAATAAAGCTTCG 60.542 50.000 0.00 0.00 45.79 3.79
128 134 8.065007 AGTATTTCTTATTAATTGCTCCCCCAA 58.935 33.333 0.00 0.00 0.00 4.12
134 140 8.900802 TCTTATTAATTGCTCCCCCAATATAGT 58.099 33.333 0.00 0.00 34.50 2.12
144 150 2.357154 CCCCAATATAGTAGGCATGCCC 60.357 54.545 33.14 18.87 36.58 5.36
145 151 2.357154 CCCAATATAGTAGGCATGCCCC 60.357 54.545 33.14 23.23 36.58 5.80
146 152 2.357154 CCAATATAGTAGGCATGCCCCC 60.357 54.545 33.14 22.86 36.58 5.40
158 164 2.036346 GCATGCCCCCATTTGATTACTC 59.964 50.000 6.36 0.00 0.00 2.59
182 188 3.018856 TCTGCTAAAATGGACCATGCAG 58.981 45.455 27.18 27.18 45.14 4.41
187 193 3.665745 AAAATGGACCATGCAGTTGAC 57.334 42.857 8.02 0.00 0.00 3.18
215 221 9.331282 ACTTGCAATCAAACTACTCTAATATCC 57.669 33.333 0.00 0.00 0.00 2.59
332 339 5.659463 TGCATTCCTACAAACAATAATGGC 58.341 37.500 0.00 0.00 0.00 4.40
333 340 5.421693 TGCATTCCTACAAACAATAATGGCT 59.578 36.000 0.00 0.00 0.00 4.75
334 341 6.605194 TGCATTCCTACAAACAATAATGGCTA 59.395 34.615 0.00 0.00 0.00 3.93
335 342 7.141363 GCATTCCTACAAACAATAATGGCTAG 58.859 38.462 0.00 0.00 0.00 3.42
336 343 6.693315 TTCCTACAAACAATAATGGCTAGC 57.307 37.500 6.04 6.04 0.00 3.42
377 384 4.616181 ATCCGCAAAATTTAGAACTCGG 57.384 40.909 0.00 0.00 37.21 4.63
453 462 6.375455 GGTGTGGTTGTTGAATCTTGATATCT 59.625 38.462 3.98 0.00 0.00 1.98
505 514 6.677781 TGAAACATATAGTGCTAGCAAACC 57.322 37.500 21.29 7.42 0.00 3.27
506 515 5.293324 TGAAACATATAGTGCTAGCAAACCG 59.707 40.000 21.29 8.68 0.00 4.44
507 516 4.665833 ACATATAGTGCTAGCAAACCGA 57.334 40.909 21.29 3.84 0.00 4.69
512 531 1.812571 AGTGCTAGCAAACCGATTTGG 59.187 47.619 21.29 0.00 44.64 3.28
522 541 3.959535 AACCGATTTGGCAAACATGAT 57.040 38.095 16.00 0.00 43.94 2.45
523 542 3.508744 ACCGATTTGGCAAACATGATC 57.491 42.857 16.00 7.60 43.94 2.92
542 561 7.172190 ACATGATCATCATAATTCACCGAACTC 59.828 37.037 4.86 0.00 34.28 3.01
548 567 4.940654 TCATAATTCACCGAACTCATGCAA 59.059 37.500 0.00 0.00 0.00 4.08
595 614 9.607988 TGTCTCAAAATAAGTGACTCAACTTTA 57.392 29.630 0.00 0.00 40.77 1.85
640 664 5.710099 CCTTCCTTTTGTACCATTTGCTCTA 59.290 40.000 0.00 0.00 0.00 2.43
783 807 2.166459 AGGGATGACATACACACAGACG 59.834 50.000 0.00 0.00 0.00 4.18
785 809 2.094182 GGATGACATACACACAGACGGT 60.094 50.000 0.00 0.00 0.00 4.83
842 1813 2.578021 CTGAATTTCCTCCTTCCTCCCA 59.422 50.000 0.00 0.00 0.00 4.37
869 1840 3.748645 TTTATAGGGCCCAAAAGCTCA 57.251 42.857 27.56 0.00 34.85 4.26
1108 2092 1.860078 GTCGTCGTCCAAAGCCTTG 59.140 57.895 0.00 0.00 0.00 3.61
1285 2308 2.046314 CGCACCAACTTCCCCGAT 60.046 61.111 0.00 0.00 0.00 4.18
1286 2309 1.219664 CGCACCAACTTCCCCGATA 59.780 57.895 0.00 0.00 0.00 2.92
1287 2310 0.391927 CGCACCAACTTCCCCGATAA 60.392 55.000 0.00 0.00 0.00 1.75
1400 2453 2.600769 AGGACAAGGACGCCTCGT 60.601 61.111 0.00 0.00 45.10 4.18
1549 2659 0.758310 TGATCGAGGAGCTGCTGGAT 60.758 55.000 28.29 28.29 0.00 3.41
1603 2721 1.376424 CCTCCGCACATGCTCTGTT 60.376 57.895 1.82 0.00 35.29 3.16
1661 2788 0.385751 CTGTCTCTCCGTGTGTGTGT 59.614 55.000 0.00 0.00 0.00 3.72
1668 2795 2.177580 CCGTGTGTGTGTGTGGGTC 61.178 63.158 0.00 0.00 0.00 4.46
1725 2852 4.533815 ACTCGAGGTTAGTATGGTCATCA 58.466 43.478 18.41 0.00 0.00 3.07
1773 2900 3.219052 ACAGTAGCTTCGTTAGAGCAC 57.781 47.619 0.00 0.00 0.00 4.40
1906 3039 3.080319 AGAGCTTTCACTCTGGCATTTC 58.920 45.455 0.00 0.00 45.36 2.17
1920 3053 2.159430 GGCATTTCCCAATTTTGCGAAC 59.841 45.455 0.00 0.00 34.17 3.95
1923 3056 3.543680 TTTCCCAATTTTGCGAACCAA 57.456 38.095 0.00 0.00 0.00 3.67
1941 3121 2.424956 CCAATTTTCACTCTGGCTAGCC 59.575 50.000 27.71 27.71 0.00 3.93
1962 3157 5.480073 AGCCTTTGCACATGGTTAATTAGAA 59.520 36.000 0.00 0.00 41.13 2.10
1965 3160 7.334171 GCCTTTGCACATGGTTAATTAGAAAAT 59.666 33.333 0.00 0.00 37.47 1.82
1993 3188 4.023279 GCACACATAACTCATCAACCACAA 60.023 41.667 0.00 0.00 0.00 3.33
1996 3191 5.827797 ACACATAACTCATCAACCACAAACT 59.172 36.000 0.00 0.00 0.00 2.66
2000 3195 5.438761 AACTCATCAACCACAAACTAAGC 57.561 39.130 0.00 0.00 0.00 3.09
2009 3204 3.214328 CCACAAACTAAGCTCACCTTGT 58.786 45.455 0.00 0.00 34.95 3.16
2015 3210 1.728971 CTAAGCTCACCTTGTTCAGCG 59.271 52.381 0.00 0.00 36.95 5.18
2016 3211 0.106708 AAGCTCACCTTGTTCAGCGA 59.893 50.000 0.00 0.00 36.95 4.93
2017 3212 0.106708 AGCTCACCTTGTTCAGCGAA 59.893 50.000 0.00 0.00 36.95 4.70
2018 3213 0.235926 GCTCACCTTGTTCAGCGAAC 59.764 55.000 12.53 12.53 42.26 3.95
2028 3223 4.267357 TGTTCAGCGAACAGTTTTGTAC 57.733 40.909 16.54 0.00 45.88 2.90
2029 3224 3.936453 TGTTCAGCGAACAGTTTTGTACT 59.064 39.130 16.54 0.00 45.88 2.73
2030 3225 4.033587 TGTTCAGCGAACAGTTTTGTACTC 59.966 41.667 16.54 0.00 45.88 2.59
2031 3226 4.054780 TCAGCGAACAGTTTTGTACTCT 57.945 40.909 0.00 0.00 36.23 3.24
2032 3227 4.439057 TCAGCGAACAGTTTTGTACTCTT 58.561 39.130 0.00 0.00 36.23 2.85
2033 3228 4.873827 TCAGCGAACAGTTTTGTACTCTTT 59.126 37.500 0.00 0.00 36.23 2.52
2052 3247 7.615790 ACTCTTTTAAGTACGTGTTTTCTTCG 58.384 34.615 0.00 0.00 0.00 3.79
2074 3269 3.813724 GGGCGAATCTCCCATTTAAGTAC 59.186 47.826 2.91 0.00 43.37 2.73
2076 3271 3.493503 GCGAATCTCCCATTTAAGTACGG 59.506 47.826 0.00 0.00 0.00 4.02
2077 3272 3.493503 CGAATCTCCCATTTAAGTACGGC 59.506 47.826 0.00 0.00 0.00 5.68
2078 3273 4.448210 GAATCTCCCATTTAAGTACGGCA 58.552 43.478 0.00 0.00 0.00 5.69
2099 3294 6.313411 CGGCAATGGACATACATTTTTCATTT 59.687 34.615 0.00 0.00 38.94 2.32
2106 3301 8.557864 TGGACATACATTTTTCATTTGCAAAAG 58.442 29.630 17.19 12.39 0.00 2.27
2158 3353 1.951209 TGCTTCATGTACTCCCTCCA 58.049 50.000 0.00 0.00 0.00 3.86
2161 3356 2.224402 GCTTCATGTACTCCCTCCATCC 60.224 54.545 0.00 0.00 0.00 3.51
2162 3357 2.866923 TCATGTACTCCCTCCATCCA 57.133 50.000 0.00 0.00 0.00 3.41
2170 3365 5.431731 TGTACTCCCTCCATCCATGTTTATT 59.568 40.000 0.00 0.00 0.00 1.40
2200 3395 5.105351 CCCTCATATTTTGGGTCAAACTTCC 60.105 44.000 0.00 0.00 36.32 3.46
2208 3403 2.224769 TGGGTCAAACTTCCACCATCTC 60.225 50.000 0.00 0.00 31.06 2.75
2211 3406 4.080299 GGGTCAAACTTCCACCATCTCTAT 60.080 45.833 0.00 0.00 31.06 1.98
2354 3549 7.877097 TGGTCAAAATTATGGTCAAAATTGGAG 59.123 33.333 0.00 0.00 0.00 3.86
2357 3552 8.093927 TCAAAATTATGGTCAAAATTGGAGGAC 58.906 33.333 0.00 0.00 0.00 3.85
2372 3567 5.283876 TGGAGGACCCAAAATAAAAGGAT 57.716 39.130 0.00 0.00 43.29 3.24
2373 3568 5.269189 TGGAGGACCCAAAATAAAAGGATC 58.731 41.667 0.00 0.00 43.29 3.36
2389 3585 2.144450 GGATCCCAATAAACCCTCCCT 58.856 52.381 0.00 0.00 0.00 4.20
2390 3586 2.108425 GGATCCCAATAAACCCTCCCTC 59.892 54.545 0.00 0.00 0.00 4.30
2407 3603 4.620723 TCCCTCATGGAGTACTGTGTATT 58.379 43.478 0.00 0.00 38.61 1.89
2410 3606 5.598830 CCCTCATGGAGTACTGTGTATTACT 59.401 44.000 0.00 0.00 35.39 2.24
2417 3613 6.832384 TGGAGTACTGTGTATTACTAGAAGGG 59.168 42.308 0.00 0.00 0.00 3.95
2418 3614 6.238981 GGAGTACTGTGTATTACTAGAAGGGC 60.239 46.154 0.00 0.00 0.00 5.19
2419 3615 5.597594 AGTACTGTGTATTACTAGAAGGGCC 59.402 44.000 0.00 0.00 0.00 5.80
2420 3616 4.359105 ACTGTGTATTACTAGAAGGGCCA 58.641 43.478 6.18 0.00 0.00 5.36
2421 3617 4.781087 ACTGTGTATTACTAGAAGGGCCAA 59.219 41.667 6.18 0.00 0.00 4.52
2436 3632 5.977489 AGGGCCAAGTTAAACAAGATTAC 57.023 39.130 6.18 0.00 0.00 1.89
2504 3700 1.153309 CAGGATGCGCATCTCCACA 60.153 57.895 40.32 6.28 37.92 4.17
2507 3703 0.745845 GGATGCGCATCTCCACAACT 60.746 55.000 40.32 11.52 37.92 3.16
2514 3710 2.670414 CGCATCTCCACAACTTCTTCTC 59.330 50.000 0.00 0.00 0.00 2.87
2516 3712 3.683822 GCATCTCCACAACTTCTTCTCTG 59.316 47.826 0.00 0.00 0.00 3.35
2543 3739 0.539051 GTCATCACCCTGTCCTCCTG 59.461 60.000 0.00 0.00 0.00 3.86
2553 3759 2.121385 TCCTCCTGTGGCTCTGCT 59.879 61.111 0.00 0.00 0.00 4.24
2568 3774 1.350684 TCTGCTTATGTGGGAGTGCAA 59.649 47.619 0.00 0.00 0.00 4.08
2574 3780 0.994247 ATGTGGGAGTGCAAGGATGA 59.006 50.000 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.480073 GCATTGGGATTGATTGTGACCG 60.480 50.000 0.00 0.00 0.00 4.79
100 106 8.360390 GGGGGAGCAATTAATAAGAAATACTTG 58.640 37.037 0.00 0.00 39.38 3.16
101 107 8.065007 TGGGGGAGCAATTAATAAGAAATACTT 58.935 33.333 0.00 0.00 42.04 2.24
102 108 7.591821 TGGGGGAGCAATTAATAAGAAATACT 58.408 34.615 0.00 0.00 0.00 2.12
103 109 7.833285 TGGGGGAGCAATTAATAAGAAATAC 57.167 36.000 0.00 0.00 0.00 1.89
128 134 2.359376 TGGGGGCATGCCTACTATAT 57.641 50.000 34.70 0.00 36.10 0.86
134 140 0.562177 ATCAAATGGGGGCATGCCTA 59.438 50.000 34.70 21.77 36.10 3.93
144 150 5.033589 AGCAGAGAGAGTAATCAAATGGG 57.966 43.478 0.00 0.00 0.00 4.00
145 151 8.498054 TTTTAGCAGAGAGAGTAATCAAATGG 57.502 34.615 0.00 0.00 0.00 3.16
146 152 9.932699 CATTTTAGCAGAGAGAGTAATCAAATG 57.067 33.333 0.00 0.00 0.00 2.32
158 164 3.314635 GCATGGTCCATTTTAGCAGAGAG 59.685 47.826 0.00 0.00 0.00 3.20
182 188 6.265577 AGTAGTTTGATTGCAAGTTGTCAAC 58.734 36.000 11.72 7.68 35.04 3.18
323 330 6.576185 AGACAAATTTGGCTAGCCATTATTG 58.424 36.000 36.24 34.06 46.90 1.90
335 342 8.699749 GCGGATTTATTAATAGACAAATTTGGC 58.300 33.333 21.74 19.43 36.08 4.52
336 343 9.743057 TGCGGATTTATTAATAGACAAATTTGG 57.257 29.630 21.74 4.79 0.00 3.28
481 490 6.017934 CGGTTTGCTAGCACTATATGTTTCAT 60.018 38.462 19.17 0.00 0.00 2.57
495 504 0.525761 TGCCAAATCGGTTTGCTAGC 59.474 50.000 15.85 13.82 42.66 3.42
505 514 4.674475 TGATGATCATGTTTGCCAAATCG 58.326 39.130 14.30 0.00 0.00 3.34
506 515 8.827177 ATTATGATGATCATGTTTGCCAAATC 57.173 30.769 17.74 0.00 37.70 2.17
507 516 9.268268 GAATTATGATGATCATGTTTGCCAAAT 57.732 29.630 17.74 4.36 37.70 2.32
512 531 6.361481 CGGTGAATTATGATGATCATGTTTGC 59.639 38.462 17.74 0.00 37.70 3.68
522 541 5.237127 GCATGAGTTCGGTGAATTATGATGA 59.763 40.000 0.00 0.00 0.00 2.92
523 542 5.007921 TGCATGAGTTCGGTGAATTATGATG 59.992 40.000 0.00 0.00 0.00 3.07
542 561 4.222124 AGTACCTCCTAACCTTTGCATG 57.778 45.455 0.00 0.00 0.00 4.06
569 588 8.506168 AAAGTTGAGTCACTTATTTTGAGACA 57.494 30.769 0.00 0.00 35.87 3.41
595 614 9.676861 GGAAGGTTATAAGTACAAAGTTGGTAT 57.323 33.333 0.00 0.00 0.00 2.73
640 664 3.693085 TCGTATTCTCGACCAGCTAGTTT 59.307 43.478 0.00 0.00 34.85 2.66
693 717 0.955919 GAAACTCCTGGAAGCACCGG 60.956 60.000 0.00 0.00 44.27 5.28
703 727 1.732259 CGGAAATGGTCGAAACTCCTG 59.268 52.381 0.00 0.00 0.00 3.86
842 1813 6.046049 AGCTTTTGGGCCCTATAAATAGAGAT 59.954 38.462 25.70 5.79 32.05 2.75
869 1840 2.171659 TGGTGATTAGTGTGGTGTGTGT 59.828 45.455 0.00 0.00 0.00 3.72
943 1927 2.743928 GTGGAACCAGCTGCCTCG 60.744 66.667 8.66 0.00 0.00 4.63
988 1972 0.454957 CGCGCCATTTCACTTTCAGG 60.455 55.000 0.00 0.00 0.00 3.86
1108 2092 0.179000 ATCGATCCAGAGCAACCACC 59.821 55.000 0.00 0.00 0.00 4.61
1110 2094 0.103026 CGATCGATCCAGAGCAACCA 59.897 55.000 19.51 0.00 0.00 3.67
1372 2422 3.496309 CTTGTCCTGGTGCTGCCCA 62.496 63.158 9.10 9.10 36.04 5.36
1381 2434 2.266055 GAGGCGTCCTTGTCCTGG 59.734 66.667 0.00 0.00 31.76 4.45
1661 2788 5.194432 TGCTAAACTAAAAACAGACCCACA 58.806 37.500 0.00 0.00 0.00 4.17
1725 2852 2.584391 GCTGTTGGAGACCTCGGGT 61.584 63.158 0.00 0.00 39.44 5.28
1809 2936 4.514441 CACTGATTAGGGCATCATCAAGAC 59.486 45.833 0.00 0.00 32.59 3.01
1810 2937 4.164796 ACACTGATTAGGGCATCATCAAGA 59.835 41.667 0.00 0.00 32.59 3.02
1811 2938 4.458397 ACACTGATTAGGGCATCATCAAG 58.542 43.478 0.00 0.00 32.59 3.02
1812 2939 4.454678 GACACTGATTAGGGCATCATCAA 58.545 43.478 0.00 0.00 32.59 2.57
1813 2940 3.181451 GGACACTGATTAGGGCATCATCA 60.181 47.826 0.00 0.00 32.59 3.07
1814 2941 3.072184 AGGACACTGATTAGGGCATCATC 59.928 47.826 0.00 0.00 32.59 2.92
1815 2942 3.051581 AGGACACTGATTAGGGCATCAT 58.948 45.455 0.00 0.00 32.59 2.45
1906 3039 4.274459 TGAAAATTGGTTCGCAAAATTGGG 59.726 37.500 4.00 4.00 41.90 4.12
1920 3053 2.424956 GGCTAGCCAGAGTGAAAATTGG 59.575 50.000 29.33 0.00 35.81 3.16
1923 3056 3.728385 AAGGCTAGCCAGAGTGAAAAT 57.272 42.857 34.70 7.82 38.92 1.82
1962 3157 9.410556 GTTGATGAGTTATGTGTGCTAAAATTT 57.589 29.630 0.00 0.00 0.00 1.82
1965 3160 6.488344 TGGTTGATGAGTTATGTGTGCTAAAA 59.512 34.615 0.00 0.00 0.00 1.52
1975 3170 7.023575 GCTTAGTTTGTGGTTGATGAGTTATG 58.976 38.462 0.00 0.00 0.00 1.90
1977 3172 6.296026 AGCTTAGTTTGTGGTTGATGAGTTA 58.704 36.000 0.00 0.00 0.00 2.24
1993 3188 3.142174 GCTGAACAAGGTGAGCTTAGTT 58.858 45.455 10.40 10.40 0.00 2.24
1996 3191 1.343142 TCGCTGAACAAGGTGAGCTTA 59.657 47.619 0.00 0.00 0.00 3.09
2009 3204 4.439057 AGAGTACAAAACTGTTCGCTGAA 58.561 39.130 0.00 0.00 39.07 3.02
2025 3220 9.841016 GAAGAAAACACGTACTTAAAAGAGTAC 57.159 33.333 5.36 5.36 45.40 2.73
2026 3221 8.745837 CGAAGAAAACACGTACTTAAAAGAGTA 58.254 33.333 0.00 0.00 0.00 2.59
2027 3222 7.254218 CCGAAGAAAACACGTACTTAAAAGAGT 60.254 37.037 0.00 0.00 0.00 3.24
2028 3223 7.061634 CCGAAGAAAACACGTACTTAAAAGAG 58.938 38.462 0.00 0.00 0.00 2.85
2029 3224 6.018832 CCCGAAGAAAACACGTACTTAAAAGA 60.019 38.462 0.00 0.00 0.00 2.52
2030 3225 6.131389 CCCGAAGAAAACACGTACTTAAAAG 58.869 40.000 0.00 0.00 0.00 2.27
2031 3226 5.503846 GCCCGAAGAAAACACGTACTTAAAA 60.504 40.000 0.00 0.00 0.00 1.52
2032 3227 4.024977 GCCCGAAGAAAACACGTACTTAAA 60.025 41.667 0.00 0.00 0.00 1.52
2033 3228 3.494251 GCCCGAAGAAAACACGTACTTAA 59.506 43.478 0.00 0.00 0.00 1.85
2040 3235 0.515564 ATTCGCCCGAAGAAAACACG 59.484 50.000 9.11 0.00 37.56 4.49
2052 3247 2.932261 ACTTAAATGGGAGATTCGCCC 58.068 47.619 17.89 17.89 43.97 6.13
2074 3269 4.742417 TGAAAAATGTATGTCCATTGCCG 58.258 39.130 0.00 0.00 35.30 5.69
2076 3271 6.962678 GCAAATGAAAAATGTATGTCCATTGC 59.037 34.615 0.00 0.00 35.30 3.56
2077 3272 8.030744 TGCAAATGAAAAATGTATGTCCATTG 57.969 30.769 0.00 0.00 35.30 2.82
2078 3273 8.618702 TTGCAAATGAAAAATGTATGTCCATT 57.381 26.923 0.00 0.00 36.62 3.16
2099 3294 5.971763 AGTGTGTATTTTGTTCCTTTTGCA 58.028 33.333 0.00 0.00 0.00 4.08
2133 3328 5.471456 GGAGGGAGTACATGAAGCATTTATG 59.529 44.000 0.00 0.00 46.34 1.90
2152 3347 5.316987 GGTCTAATAAACATGGATGGAGGG 58.683 45.833 0.00 0.00 0.00 4.30
2158 3353 4.981647 TGAGGGGGTCTAATAAACATGGAT 59.018 41.667 0.00 0.00 0.00 3.41
2161 3356 8.940397 AAATATGAGGGGGTCTAATAAACATG 57.060 34.615 0.00 0.00 0.00 3.21
2162 3357 9.367160 CAAAATATGAGGGGGTCTAATAAACAT 57.633 33.333 0.00 0.00 0.00 2.71
2326 3521 9.664332 CCAATTTTGACCATAATTTTGACCATA 57.336 29.630 0.00 0.00 0.00 2.74
2327 3522 8.381636 TCCAATTTTGACCATAATTTTGACCAT 58.618 29.630 0.00 0.00 0.00 3.55
2328 3523 7.739825 TCCAATTTTGACCATAATTTTGACCA 58.260 30.769 0.00 0.00 0.00 4.02
2329 3524 7.334171 CCTCCAATTTTGACCATAATTTTGACC 59.666 37.037 0.00 0.00 0.00 4.02
2330 3525 8.093927 TCCTCCAATTTTGACCATAATTTTGAC 58.906 33.333 0.00 0.00 0.00 3.18
2331 3526 8.093927 GTCCTCCAATTTTGACCATAATTTTGA 58.906 33.333 0.00 0.00 0.00 2.69
2332 3527 7.334171 GGTCCTCCAATTTTGACCATAATTTTG 59.666 37.037 0.00 0.00 45.29 2.44
2333 3528 7.394016 GGTCCTCCAATTTTGACCATAATTTT 58.606 34.615 0.00 0.00 45.29 1.82
2334 3529 6.946340 GGTCCTCCAATTTTGACCATAATTT 58.054 36.000 0.00 0.00 45.29 1.82
2335 3530 6.544928 GGTCCTCCAATTTTGACCATAATT 57.455 37.500 0.00 0.00 45.29 1.40
2341 3536 2.302587 TGGGTCCTCCAATTTTGACC 57.697 50.000 0.00 0.00 43.84 4.02
2357 3552 7.773224 GGTTTATTGGGATCCTTTTATTTTGGG 59.227 37.037 12.58 0.00 0.00 4.12
2366 3561 3.052109 GGGAGGGTTTATTGGGATCCTTT 60.052 47.826 12.58 0.00 0.00 3.11
2372 3567 2.369668 TGAGGGAGGGTTTATTGGGA 57.630 50.000 0.00 0.00 0.00 4.37
2373 3568 2.424812 CCATGAGGGAGGGTTTATTGGG 60.425 54.545 0.00 0.00 40.01 4.12
2389 3585 9.121658 CTTCTAGTAATACACAGTACTCCATGA 57.878 37.037 0.00 0.00 36.90 3.07
2390 3586 8.353684 CCTTCTAGTAATACACAGTACTCCATG 58.646 40.741 0.00 0.00 36.90 3.66
2399 3595 5.104900 ACTTGGCCCTTCTAGTAATACACAG 60.105 44.000 0.00 0.00 0.00 3.66
2407 3603 5.829062 TGTTTAACTTGGCCCTTCTAGTA 57.171 39.130 0.00 0.00 0.00 1.82
2410 3606 5.313280 TCTTGTTTAACTTGGCCCTTCTA 57.687 39.130 0.00 0.00 0.00 2.10
2417 3613 9.908152 ATAACTTGTAATCTTGTTTAACTTGGC 57.092 29.630 0.00 0.00 0.00 4.52
2436 3632 5.716703 AGGAATGGTTGGGAAGAATAACTTG 59.283 40.000 0.00 0.00 39.13 3.16
2445 3641 1.064389 GGGAGAGGAATGGTTGGGAAG 60.064 57.143 0.00 0.00 0.00 3.46
2490 3686 1.089920 GAAGTTGTGGAGATGCGCAT 58.910 50.000 25.66 25.66 0.00 4.73
2504 3700 3.243724 ACCCACTAGCAGAGAAGAAGTT 58.756 45.455 0.00 0.00 0.00 2.66
2507 3703 2.889512 TGACCCACTAGCAGAGAAGAA 58.110 47.619 0.00 0.00 0.00 2.52
2514 3710 3.768633 GGTGATGACCCACTAGCAG 57.231 57.895 0.00 0.00 36.03 4.24
2538 3734 1.209019 ACATAAGCAGAGCCACAGGAG 59.791 52.381 0.00 0.00 0.00 3.69
2543 3739 0.253044 TCCCACATAAGCAGAGCCAC 59.747 55.000 0.00 0.00 0.00 5.01
2553 3759 2.575735 TCATCCTTGCACTCCCACATAA 59.424 45.455 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.