Multiple sequence alignment - TraesCS7B01G047600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G047600 chr7B 100.000 5091 0 0 1 5091 47004823 46999733 0.000000e+00 9402
1 TraesCS7B01G047600 chr7B 85.310 1518 185 34 1830 3331 690754917 690753422 0.000000e+00 1533
2 TraesCS7B01G047600 chr7B 83.432 338 44 10 3343 3674 690753285 690752954 2.300000e-78 303
3 TraesCS7B01G047600 chr7B 92.973 185 11 2 233 417 337159083 337159265 8.400000e-68 268
4 TraesCS7B01G047600 chr7B 91.327 196 13 4 225 417 218546276 218546082 1.090000e-66 265
5 TraesCS7B01G047600 chr7B 91.623 191 15 1 222 412 727383604 727383793 3.910000e-66 263
6 TraesCS7B01G047600 chr7B 85.106 141 19 2 3957 4096 690752790 690752651 5.310000e-30 143
7 TraesCS7B01G047600 chr7D 95.104 4514 133 25 595 5091 93792246 93787804 0.000000e+00 7031
8 TraesCS7B01G047600 chr7D 85.053 1512 196 29 1832 3331 606636159 606637652 0.000000e+00 1513
9 TraesCS7B01G047600 chr7D 86.438 553 69 5 1280 1829 606635501 606636050 7.290000e-168 601
10 TraesCS7B01G047600 chr7D 82.596 339 45 12 3343 3674 606637774 606638105 2.320000e-73 287
11 TraesCS7B01G047600 chr7D 86.957 207 16 5 32 233 93806901 93806701 6.630000e-54 222
12 TraesCS7B01G047600 chr7D 82.278 158 24 4 3937 4092 606638249 606638404 3.200000e-27 134
13 TraesCS7B01G047600 chr7A 94.530 3967 118 47 409 4359 96571240 96567357 0.000000e+00 6032
14 TraesCS7B01G047600 chr7A 85.234 1517 198 23 1825 3331 698679382 698677882 0.000000e+00 1537
15 TraesCS7B01G047600 chr7A 93.893 393 21 2 4700 5091 96565718 96565328 1.580000e-164 590
16 TraesCS7B01G047600 chr7A 88.571 315 10 5 4355 4664 96566523 96566230 4.850000e-95 359
17 TraesCS7B01G047600 chr7A 84.226 336 45 7 3343 3674 698677753 698677422 2.290000e-83 320
18 TraesCS7B01G047600 chr7A 88.265 196 14 8 2 196 96571446 96571259 5.130000e-55 226
19 TraesCS7B01G047600 chr7A 84.138 145 21 2 3949 4092 698677266 698677123 6.870000e-29 139
20 TraesCS7B01G047600 chr6A 89.967 2143 203 12 1195 3331 591440013 591437877 0.000000e+00 2756
21 TraesCS7B01G047600 chr6A 87.052 363 45 2 3330 3691 591437777 591437416 4.740000e-110 409
22 TraesCS7B01G047600 chr6A 79.931 289 46 8 3817 4093 591437337 591437049 8.640000e-48 202
23 TraesCS7B01G047600 chr6A 78.201 289 51 8 3817 4093 591436320 591436032 1.880000e-39 174
24 TraesCS7B01G047600 chr6B 89.658 2166 212 12 1172 3331 668250628 668248469 0.000000e+00 2748
25 TraesCS7B01G047600 chr6B 87.293 362 44 2 3330 3690 668248352 668247992 3.670000e-111 412
26 TraesCS7B01G047600 chr6B 79.791 287 46 8 3819 4093 668247903 668247617 1.120000e-46 198
27 TraesCS7B01G047600 chr6B 91.566 83 6 1 4346 4427 642350236 642350318 4.170000e-21 113
28 TraesCS7B01G047600 chr6D 89.622 2168 209 16 1172 3331 443849968 443847809 0.000000e+00 2743
29 TraesCS7B01G047600 chr6D 87.569 362 43 2 3330 3690 443847722 443847362 7.880000e-113 418
30 TraesCS7B01G047600 chr6D 80.969 289 43 8 3817 4093 443847283 443846995 8.580000e-53 219
31 TraesCS7B01G047600 chr1D 83.676 1801 251 38 1280 3054 349794640 349792857 0.000000e+00 1657
32 TraesCS7B01G047600 chr1A 83.435 1799 259 34 1280 3054 450096396 450094613 0.000000e+00 1635
33 TraesCS7B01G047600 chr1B 83.398 1801 256 38 1280 3054 471763388 471761605 0.000000e+00 1629
34 TraesCS7B01G047600 chr4B 79.218 563 99 13 2506 3053 586467286 586466727 4.810000e-100 375
35 TraesCS7B01G047600 chr4B 92.188 192 12 3 226 415 644376466 644376276 8.400000e-68 268
36 TraesCS7B01G047600 chr4B 90.355 197 19 0 222 418 405055862 405055666 5.060000e-65 259
37 TraesCS7B01G047600 chr3B 93.333 195 12 1 225 419 819815093 819814900 2.320000e-73 287
38 TraesCS7B01G047600 chr3B 89.130 92 8 2 4346 4435 429973611 429973520 4.170000e-21 113
39 TraesCS7B01G047600 chr3B 88.889 90 9 1 4343 4431 44742025 44742114 5.390000e-20 110
40 TraesCS7B01G047600 chr3B 89.655 87 8 1 4346 4431 62394280 62394194 5.390000e-20 110
41 TraesCS7B01G047600 chr5B 91.919 198 15 1 215 411 363665281 363665478 5.020000e-70 276
42 TraesCS7B01G047600 chr5B 89.011 91 9 1 4345 4434 604056373 604056463 1.500000e-20 111
43 TraesCS7B01G047600 chr3D 93.048 187 11 2 233 419 454745016 454744832 6.500000e-69 272
44 TraesCS7B01G047600 chr2B 91.753 194 16 0 228 421 36413918 36413725 2.340000e-68 270
45 TraesCS7B01G047600 chr2D 90.909 88 7 1 4346 4432 208540144 208540231 3.220000e-22 117
46 TraesCS7B01G047600 chr4A 89.773 88 5 3 4347 4432 149042851 149042766 5.390000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G047600 chr7B 46999733 47004823 5090 True 9402.000000 9402 100.000000 1 5091 1 chr7B.!!$R1 5090
1 TraesCS7B01G047600 chr7B 690752651 690754917 2266 True 659.666667 1533 84.616000 1830 4096 3 chr7B.!!$R3 2266
2 TraesCS7B01G047600 chr7D 93787804 93792246 4442 True 7031.000000 7031 95.104000 595 5091 1 chr7D.!!$R1 4496
3 TraesCS7B01G047600 chr7D 606635501 606638404 2903 False 633.750000 1513 84.091250 1280 4092 4 chr7D.!!$F1 2812
4 TraesCS7B01G047600 chr7A 96565328 96571446 6118 True 1801.750000 6032 91.314750 2 5091 4 chr7A.!!$R1 5089
5 TraesCS7B01G047600 chr7A 698677123 698679382 2259 True 665.333333 1537 84.532667 1825 4092 3 chr7A.!!$R2 2267
6 TraesCS7B01G047600 chr6A 591436032 591440013 3981 True 885.250000 2756 83.787750 1195 4093 4 chr6A.!!$R1 2898
7 TraesCS7B01G047600 chr6B 668247617 668250628 3011 True 1119.333333 2748 85.580667 1172 4093 3 chr6B.!!$R1 2921
8 TraesCS7B01G047600 chr6D 443846995 443849968 2973 True 1126.666667 2743 86.053333 1172 4093 3 chr6D.!!$R1 2921
9 TraesCS7B01G047600 chr1D 349792857 349794640 1783 True 1657.000000 1657 83.676000 1280 3054 1 chr1D.!!$R1 1774
10 TraesCS7B01G047600 chr1A 450094613 450096396 1783 True 1635.000000 1635 83.435000 1280 3054 1 chr1A.!!$R1 1774
11 TraesCS7B01G047600 chr1B 471761605 471763388 1783 True 1629.000000 1629 83.398000 1280 3054 1 chr1B.!!$R1 1774
12 TraesCS7B01G047600 chr4B 586466727 586467286 559 True 375.000000 375 79.218000 2506 3053 1 chr4B.!!$R2 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.179250 GATGCGTGTGTGCTAACGTG 60.179 55.000 0.00 0.00 41.76 4.49 F
1058 1064 0.108281 GTCGACCTGGTAAGCCCTTC 60.108 60.000 3.51 0.00 0.00 3.46 F
1137 1144 0.944311 ACGTCTCGTGTGCATTGGAC 60.944 55.000 0.72 0.72 39.18 4.02 F
1328 1335 1.302431 CATGTGGAACCCGCTGTCA 60.302 57.895 0.00 0.00 34.70 3.58 F
1692 1702 1.671742 CTGCCGGTGAACAGGTACT 59.328 57.895 1.90 0.00 43.88 2.73 F
3230 3364 0.391130 CGAAGCCGGACTCATGGAAA 60.391 55.000 5.05 0.00 0.00 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1151 1158 1.263217 GTCACCGTCGACTGCAAAATT 59.737 47.619 14.70 0.00 32.92 1.82 R
2312 2428 2.448931 TCCACCGGGTTGAAGGGT 60.449 61.111 6.32 0.00 34.93 4.34 R
2570 2692 2.711922 CCTCGGAGGGTCGAACAGG 61.712 68.421 16.59 0.00 38.77 4.00 R
3224 3358 4.035278 GAAGATCTCGTCGAGTTTCCAT 57.965 45.455 21.15 7.57 0.00 3.41 R
3354 3630 4.003788 CTGCCGGTCGTTGTCCCT 62.004 66.667 1.90 0.00 0.00 4.20 R
4447 6620 0.037326 AGCCAGGATACACACACACG 60.037 55.000 0.00 0.00 41.41 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.551496 CTCTTCAGTTGGGCCGGCA 62.551 63.158 30.85 5.28 0.00 5.69
30 31 4.830765 GGCCGGCATGCACGAGTA 62.831 66.667 30.85 0.00 0.00 2.59
41 42 2.361357 ACGAGTAGGCCGAGCTGT 60.361 61.111 0.00 0.00 0.00 4.40
65 66 3.056328 GGCCACCGACTTGCCTTC 61.056 66.667 0.00 0.00 42.01 3.46
87 88 1.382522 GTGGGGTATGCATGTCAGTG 58.617 55.000 10.16 0.00 0.00 3.66
102 103 3.249189 GTGCCACTGACAGGGGGA 61.249 66.667 25.30 20.58 39.88 4.81
143 144 3.131755 ACTGAGATTGCACGATGATGAGA 59.868 43.478 0.00 0.00 0.00 3.27
144 145 3.714391 TGAGATTGCACGATGATGAGAG 58.286 45.455 0.00 0.00 0.00 3.20
145 146 3.382546 TGAGATTGCACGATGATGAGAGA 59.617 43.478 0.00 0.00 0.00 3.10
146 147 3.979948 AGATTGCACGATGATGAGAGAG 58.020 45.455 0.00 0.00 0.00 3.20
147 148 3.635836 AGATTGCACGATGATGAGAGAGA 59.364 43.478 0.00 0.00 0.00 3.10
148 149 3.433513 TTGCACGATGATGAGAGAGAG 57.566 47.619 0.00 0.00 0.00 3.20
149 150 2.648059 TGCACGATGATGAGAGAGAGA 58.352 47.619 0.00 0.00 0.00 3.10
150 151 2.617774 TGCACGATGATGAGAGAGAGAG 59.382 50.000 0.00 0.00 0.00 3.20
157 158 3.392730 TGATGAGAGAGAGAGAGAGGGA 58.607 50.000 0.00 0.00 0.00 4.20
158 159 3.392285 TGATGAGAGAGAGAGAGAGGGAG 59.608 52.174 0.00 0.00 0.00 4.30
162 163 3.312890 AGAGAGAGAGAGAGGGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
164 165 3.312890 AGAGAGAGAGAGGGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
168 169 3.312890 AGAGAGAGGGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
173 174 1.134098 AGGGAGAGAGAGAGAGAAGCG 60.134 57.143 0.00 0.00 0.00 4.68
183 184 1.874345 GAGAGAAGCGGACCGTTGGA 61.874 60.000 16.73 0.00 0.00 3.53
188 189 0.250553 AAGCGGACCGTTGGATTTCA 60.251 50.000 16.73 0.00 0.00 2.69
190 191 0.808755 GCGGACCGTTGGATTTCAAT 59.191 50.000 16.73 0.00 37.73 2.57
191 192 1.202143 GCGGACCGTTGGATTTCAATC 60.202 52.381 16.73 0.00 37.73 2.67
192 193 1.062002 CGGACCGTTGGATTTCAATCG 59.938 52.381 5.48 0.00 37.73 3.34
193 194 2.352388 GGACCGTTGGATTTCAATCGA 58.648 47.619 0.00 0.00 37.73 3.59
194 195 2.351726 GGACCGTTGGATTTCAATCGAG 59.648 50.000 0.00 0.00 37.73 4.04
195 196 3.000727 GACCGTTGGATTTCAATCGAGT 58.999 45.455 0.00 0.00 37.73 4.18
196 197 4.178540 GACCGTTGGATTTCAATCGAGTA 58.821 43.478 0.00 0.00 37.73 2.59
197 198 4.571919 ACCGTTGGATTTCAATCGAGTAA 58.428 39.130 0.00 0.00 37.73 2.24
198 199 5.183228 ACCGTTGGATTTCAATCGAGTAAT 58.817 37.500 0.00 0.00 37.73 1.89
199 200 5.646360 ACCGTTGGATTTCAATCGAGTAATT 59.354 36.000 0.00 0.00 37.73 1.40
200 201 6.183360 ACCGTTGGATTTCAATCGAGTAATTC 60.183 38.462 0.00 0.00 37.73 2.17
201 202 6.183360 CCGTTGGATTTCAATCGAGTAATTCA 60.183 38.462 0.00 0.00 37.73 2.57
202 203 6.901887 CGTTGGATTTCAATCGAGTAATTCAG 59.098 38.462 0.00 0.00 37.73 3.02
203 204 6.925610 TGGATTTCAATCGAGTAATTCAGG 57.074 37.500 0.00 0.00 36.27 3.86
204 205 5.296780 TGGATTTCAATCGAGTAATTCAGGC 59.703 40.000 0.00 0.00 36.27 4.85
205 206 5.296780 GGATTTCAATCGAGTAATTCAGGCA 59.703 40.000 0.00 0.00 36.27 4.75
206 207 5.545658 TTTCAATCGAGTAATTCAGGCAC 57.454 39.130 0.00 0.00 0.00 5.01
207 208 4.200838 TCAATCGAGTAATTCAGGCACA 57.799 40.909 0.00 0.00 0.00 4.57
219 220 2.288666 TCAGGCACAGTCAACTGAAAC 58.711 47.619 16.71 6.01 46.59 2.78
222 223 2.684881 AGGCACAGTCAACTGAAACTTG 59.315 45.455 16.71 5.40 46.59 3.16
225 226 4.095782 GGCACAGTCAACTGAAACTTGTTA 59.904 41.667 16.71 0.00 46.59 2.41
226 227 5.392595 GGCACAGTCAACTGAAACTTGTTAA 60.393 40.000 16.71 0.00 46.59 2.01
227 228 6.265577 GCACAGTCAACTGAAACTTGTTAAT 58.734 36.000 16.71 0.00 46.59 1.40
228 229 6.751888 GCACAGTCAACTGAAACTTGTTAATT 59.248 34.615 16.71 0.00 46.59 1.40
229 230 7.275560 GCACAGTCAACTGAAACTTGTTAATTT 59.724 33.333 16.71 0.00 46.59 1.82
230 231 8.586273 CACAGTCAACTGAAACTTGTTAATTTG 58.414 33.333 16.71 0.00 46.59 2.32
231 232 8.303876 ACAGTCAACTGAAACTTGTTAATTTGT 58.696 29.630 16.71 0.00 46.59 2.83
232 233 9.139174 CAGTCAACTGAAACTTGTTAATTTGTT 57.861 29.630 4.05 0.00 46.59 2.83
233 234 9.353999 AGTCAACTGAAACTTGTTAATTTGTTC 57.646 29.630 0.00 0.00 0.00 3.18
234 235 9.134734 GTCAACTGAAACTTGTTAATTTGTTCA 57.865 29.630 0.00 0.00 0.00 3.18
235 236 9.352784 TCAACTGAAACTTGTTAATTTGTTCAG 57.647 29.630 8.54 8.54 0.00 3.02
236 237 9.139174 CAACTGAAACTTGTTAATTTGTTCAGT 57.861 29.630 9.68 9.68 35.04 3.41
237 238 9.705290 AACTGAAACTTGTTAATTTGTTCAGTT 57.295 25.926 18.33 18.33 36.79 3.16
238 239 9.705290 ACTGAAACTTGTTAATTTGTTCAGTTT 57.295 25.926 9.68 0.00 32.55 2.66
241 242 9.261318 GAAACTTGTTAATTTGTTCAGTTTTGC 57.739 29.630 0.00 0.00 0.00 3.68
242 243 8.546597 AACTTGTTAATTTGTTCAGTTTTGCT 57.453 26.923 0.00 0.00 0.00 3.91
243 244 9.646427 AACTTGTTAATTTGTTCAGTTTTGCTA 57.354 25.926 0.00 0.00 0.00 3.49
244 245 9.301153 ACTTGTTAATTTGTTCAGTTTTGCTAG 57.699 29.630 0.00 0.00 0.00 3.42
245 246 9.515020 CTTGTTAATTTGTTCAGTTTTGCTAGA 57.485 29.630 0.00 0.00 0.00 2.43
246 247 9.862371 TTGTTAATTTGTTCAGTTTTGCTAGAA 57.138 25.926 0.00 0.00 0.00 2.10
247 248 9.296400 TGTTAATTTGTTCAGTTTTGCTAGAAC 57.704 29.630 0.00 0.00 40.45 3.01
248 249 9.516314 GTTAATTTGTTCAGTTTTGCTAGAACT 57.484 29.630 0.00 0.00 40.62 3.01
249 250 9.730420 TTAATTTGTTCAGTTTTGCTAGAACTC 57.270 29.630 0.00 0.00 40.62 3.01
250 251 6.751514 TTTGTTCAGTTTTGCTAGAACTCA 57.248 33.333 0.00 0.00 40.62 3.41
251 252 6.942532 TTGTTCAGTTTTGCTAGAACTCAT 57.057 33.333 0.00 0.00 40.62 2.90
252 253 6.545504 TGTTCAGTTTTGCTAGAACTCATC 57.454 37.500 0.00 0.00 40.62 2.92
253 254 6.291377 TGTTCAGTTTTGCTAGAACTCATCT 58.709 36.000 0.00 0.00 40.62 2.90
254 255 7.441836 TGTTCAGTTTTGCTAGAACTCATCTA 58.558 34.615 0.00 0.00 40.62 1.98
293 294 9.851686 ATTAGTCTCATTCACATTTTATAGCCA 57.148 29.630 0.00 0.00 0.00 4.75
294 295 9.851686 TTAGTCTCATTCACATTTTATAGCCAT 57.148 29.630 0.00 0.00 0.00 4.40
295 296 8.757982 AGTCTCATTCACATTTTATAGCCATT 57.242 30.769 0.00 0.00 0.00 3.16
296 297 8.627403 AGTCTCATTCACATTTTATAGCCATTG 58.373 33.333 0.00 0.00 0.00 2.82
297 298 7.864379 GTCTCATTCACATTTTATAGCCATTGG 59.136 37.037 0.00 0.00 0.00 3.16
298 299 7.779326 TCTCATTCACATTTTATAGCCATTGGA 59.221 33.333 6.95 0.00 0.00 3.53
299 300 8.481492 TCATTCACATTTTATAGCCATTGGAT 57.519 30.769 6.95 1.78 0.00 3.41
300 301 8.361889 TCATTCACATTTTATAGCCATTGGATG 58.638 33.333 6.95 1.83 0.00 3.51
301 302 7.658525 TTCACATTTTATAGCCATTGGATGT 57.341 32.000 6.95 0.10 0.00 3.06
302 303 7.041635 TCACATTTTATAGCCATTGGATGTG 57.958 36.000 18.49 18.49 42.55 3.21
303 304 6.832900 TCACATTTTATAGCCATTGGATGTGA 59.167 34.615 21.27 21.27 45.57 3.58
304 305 7.506599 TCACATTTTATAGCCATTGGATGTGAT 59.493 33.333 21.27 5.32 43.98 3.06
305 306 7.597369 CACATTTTATAGCCATTGGATGTGATG 59.403 37.037 19.29 13.55 43.37 3.07
306 307 5.710513 TTTATAGCCATTGGATGTGATGC 57.289 39.130 6.95 0.00 0.00 3.91
307 308 3.520691 ATAGCCATTGGATGTGATGCT 57.479 42.857 6.95 0.00 0.00 3.79
308 309 4.645863 ATAGCCATTGGATGTGATGCTA 57.354 40.909 6.95 0.00 0.00 3.49
309 310 3.520691 AGCCATTGGATGTGATGCTAT 57.479 42.857 6.95 0.00 0.00 2.97
310 311 4.645863 AGCCATTGGATGTGATGCTATA 57.354 40.909 6.95 0.00 0.00 1.31
311 312 4.989277 AGCCATTGGATGTGATGCTATAA 58.011 39.130 6.95 0.00 0.00 0.98
312 313 5.008331 AGCCATTGGATGTGATGCTATAAG 58.992 41.667 6.95 0.00 0.00 1.73
313 314 5.005740 GCCATTGGATGTGATGCTATAAGA 58.994 41.667 6.95 0.00 0.00 2.10
314 315 5.651139 GCCATTGGATGTGATGCTATAAGAT 59.349 40.000 6.95 0.00 0.00 2.40
315 316 6.404403 GCCATTGGATGTGATGCTATAAGATG 60.404 42.308 6.95 0.00 0.00 2.90
316 317 6.404403 CCATTGGATGTGATGCTATAAGATGC 60.404 42.308 0.00 0.00 0.00 3.91
317 318 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
318 319 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
319 320 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
320 321 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
321 322 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
322 323 3.804325 GTGATGCTATAAGATGCGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
323 324 3.803778 TGATGCTATAAGATGCGTGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
324 325 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
325 326 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
326 327 3.181480 TGCTATAAGATGCGTGTGTGCTA 60.181 43.478 0.00 0.00 35.36 3.49
327 328 3.802139 GCTATAAGATGCGTGTGTGCTAA 59.198 43.478 0.00 0.00 35.36 3.09
328 329 4.318121 GCTATAAGATGCGTGTGTGCTAAC 60.318 45.833 0.00 0.00 35.36 2.34
329 330 0.790207 AAGATGCGTGTGTGCTAACG 59.210 50.000 0.00 0.00 42.61 3.18
330 331 0.319555 AGATGCGTGTGTGCTAACGT 60.320 50.000 0.00 0.00 41.76 3.99
331 332 0.179250 GATGCGTGTGTGCTAACGTG 60.179 55.000 0.00 0.00 41.76 4.49
332 333 1.565156 ATGCGTGTGTGCTAACGTGG 61.565 55.000 0.00 0.00 41.76 4.94
333 334 2.950172 GCGTGTGTGCTAACGTGGG 61.950 63.158 0.00 0.00 41.76 4.61
334 335 1.593209 CGTGTGTGCTAACGTGGGT 60.593 57.895 0.00 0.00 35.13 4.51
335 336 1.155424 CGTGTGTGCTAACGTGGGTT 61.155 55.000 0.00 0.00 40.20 4.11
336 337 1.018910 GTGTGTGCTAACGTGGGTTT 58.981 50.000 0.00 0.00 37.58 3.27
337 338 1.402613 GTGTGTGCTAACGTGGGTTTT 59.597 47.619 0.00 0.00 37.58 2.43
338 339 2.613133 GTGTGTGCTAACGTGGGTTTTA 59.387 45.455 0.00 0.00 37.58 1.52
339 340 3.251487 GTGTGTGCTAACGTGGGTTTTAT 59.749 43.478 0.00 0.00 37.58 1.40
340 341 3.499157 TGTGTGCTAACGTGGGTTTTATC 59.501 43.478 0.00 0.00 37.58 1.75
341 342 3.749609 GTGTGCTAACGTGGGTTTTATCT 59.250 43.478 0.00 0.00 37.58 1.98
342 343 3.749088 TGTGCTAACGTGGGTTTTATCTG 59.251 43.478 0.00 0.00 37.58 2.90
343 344 3.749609 GTGCTAACGTGGGTTTTATCTGT 59.250 43.478 0.00 0.00 37.58 3.41
344 345 4.214758 GTGCTAACGTGGGTTTTATCTGTT 59.785 41.667 0.00 0.00 37.58 3.16
345 346 4.822896 TGCTAACGTGGGTTTTATCTGTTT 59.177 37.500 0.00 0.00 37.58 2.83
346 347 5.299782 TGCTAACGTGGGTTTTATCTGTTTT 59.700 36.000 0.00 0.00 37.58 2.43
347 348 6.183360 TGCTAACGTGGGTTTTATCTGTTTTT 60.183 34.615 0.00 0.00 37.58 1.94
348 349 6.143278 GCTAACGTGGGTTTTATCTGTTTTTG 59.857 38.462 0.00 0.00 37.58 2.44
349 350 5.585820 ACGTGGGTTTTATCTGTTTTTGT 57.414 34.783 0.00 0.00 0.00 2.83
350 351 5.968254 ACGTGGGTTTTATCTGTTTTTGTT 58.032 33.333 0.00 0.00 0.00 2.83
351 352 6.399743 ACGTGGGTTTTATCTGTTTTTGTTT 58.600 32.000 0.00 0.00 0.00 2.83
352 353 6.874664 ACGTGGGTTTTATCTGTTTTTGTTTT 59.125 30.769 0.00 0.00 0.00 2.43
353 354 7.063662 ACGTGGGTTTTATCTGTTTTTGTTTTC 59.936 33.333 0.00 0.00 0.00 2.29
354 355 7.464844 CGTGGGTTTTATCTGTTTTTGTTTTCC 60.465 37.037 0.00 0.00 0.00 3.13
355 356 7.334671 GTGGGTTTTATCTGTTTTTGTTTTCCA 59.665 33.333 0.00 0.00 0.00 3.53
356 357 8.049721 TGGGTTTTATCTGTTTTTGTTTTCCAT 58.950 29.630 0.00 0.00 0.00 3.41
357 358 8.341903 GGGTTTTATCTGTTTTTGTTTTCCATG 58.658 33.333 0.00 0.00 0.00 3.66
358 359 8.888716 GGTTTTATCTGTTTTTGTTTTCCATGT 58.111 29.630 0.00 0.00 0.00 3.21
359 360 9.701355 GTTTTATCTGTTTTTGTTTTCCATGTG 57.299 29.630 0.00 0.00 0.00 3.21
360 361 9.658799 TTTTATCTGTTTTTGTTTTCCATGTGA 57.341 25.926 0.00 0.00 0.00 3.58
361 362 9.658799 TTTATCTGTTTTTGTTTTCCATGTGAA 57.341 25.926 0.00 0.00 0.00 3.18
362 363 9.829507 TTATCTGTTTTTGTTTTCCATGTGAAT 57.170 25.926 0.00 0.00 31.67 2.57
363 364 7.536895 TCTGTTTTTGTTTTCCATGTGAATG 57.463 32.000 0.00 0.00 31.67 2.67
364 365 7.326454 TCTGTTTTTGTTTTCCATGTGAATGA 58.674 30.769 0.00 0.00 31.67 2.57
365 366 7.492020 TCTGTTTTTGTTTTCCATGTGAATGAG 59.508 33.333 0.00 0.00 31.67 2.90
366 367 7.326454 TGTTTTTGTTTTCCATGTGAATGAGA 58.674 30.769 0.00 0.00 31.67 3.27
367 368 7.277539 TGTTTTTGTTTTCCATGTGAATGAGAC 59.722 33.333 0.00 0.00 31.67 3.36
368 369 5.452078 TTGTTTTCCATGTGAATGAGACC 57.548 39.130 0.00 0.00 31.67 3.85
369 370 4.468713 TGTTTTCCATGTGAATGAGACCA 58.531 39.130 0.00 0.00 31.67 4.02
370 371 4.892345 TGTTTTCCATGTGAATGAGACCAA 59.108 37.500 0.00 0.00 31.67 3.67
371 372 5.362143 TGTTTTCCATGTGAATGAGACCAAA 59.638 36.000 0.00 0.00 31.67 3.28
372 373 6.041865 TGTTTTCCATGTGAATGAGACCAAAT 59.958 34.615 0.00 0.00 31.67 2.32
373 374 6.669125 TTTCCATGTGAATGAGACCAAATT 57.331 33.333 0.00 0.00 31.67 1.82
374 375 7.773489 TTTCCATGTGAATGAGACCAAATTA 57.227 32.000 0.00 0.00 31.67 1.40
375 376 7.773489 TTCCATGTGAATGAGACCAAATTAA 57.227 32.000 0.00 0.00 0.00 1.40
376 377 7.773489 TCCATGTGAATGAGACCAAATTAAA 57.227 32.000 0.00 0.00 0.00 1.52
377 378 8.365060 TCCATGTGAATGAGACCAAATTAAAT 57.635 30.769 0.00 0.00 0.00 1.40
378 379 8.469200 TCCATGTGAATGAGACCAAATTAAATC 58.531 33.333 0.00 0.00 0.00 2.17
379 380 8.472413 CCATGTGAATGAGACCAAATTAAATCT 58.528 33.333 0.00 0.00 0.00 2.40
380 381 9.865321 CATGTGAATGAGACCAAATTAAATCTT 57.135 29.630 0.00 0.00 0.00 2.40
404 405 9.444600 CTTATCTAGATGAGTTCTAGGTACTCC 57.555 40.741 15.79 8.04 46.00 3.85
405 406 8.384718 TTATCTAGATGAGTTCTAGGTACTCCC 58.615 40.741 15.79 12.05 46.00 4.30
412 413 7.419711 TGAGTTCTAGGTACTCCCTAATTTG 57.580 40.000 17.72 0.00 45.40 2.32
415 416 8.906238 AGTTCTAGGTACTCCCTAATTTGTTA 57.094 34.615 0.00 0.00 45.40 2.41
430 431 9.014297 CCTAATTTGTTATCTTTCCAGTTGACT 57.986 33.333 0.00 0.00 0.00 3.41
464 465 0.966920 GGAGGTCACTTTCTCGTCCA 59.033 55.000 0.00 0.00 36.52 4.02
466 467 2.028020 GGAGGTCACTTTCTCGTCCAAT 60.028 50.000 0.00 0.00 36.52 3.16
472 473 3.071023 TCACTTTCTCGTCCAATGGAAGT 59.929 43.478 14.54 5.72 33.12 3.01
473 474 3.187227 CACTTTCTCGTCCAATGGAAGTG 59.813 47.826 14.54 13.81 33.12 3.16
474 475 3.071023 ACTTTCTCGTCCAATGGAAGTGA 59.929 43.478 14.54 14.38 30.28 3.41
476 477 3.981071 TCTCGTCCAATGGAAGTGATT 57.019 42.857 14.54 0.00 30.28 2.57
477 478 3.599343 TCTCGTCCAATGGAAGTGATTG 58.401 45.455 14.54 2.82 30.28 2.67
479 480 4.002982 CTCGTCCAATGGAAGTGATTGAA 58.997 43.478 14.54 0.00 30.28 2.69
480 481 3.751175 TCGTCCAATGGAAGTGATTGAAC 59.249 43.478 14.54 0.00 30.28 3.18
481 482 3.501828 CGTCCAATGGAAGTGATTGAACA 59.498 43.478 2.31 0.00 30.28 3.18
483 484 3.826157 TCCAATGGAAGTGATTGAACACC 59.174 43.478 0.00 0.00 41.12 4.16
484 485 3.366273 CCAATGGAAGTGATTGAACACCG 60.366 47.826 0.00 0.00 41.12 4.94
485 486 2.631160 TGGAAGTGATTGAACACCGT 57.369 45.000 0.00 0.00 41.12 4.83
486 487 2.489971 TGGAAGTGATTGAACACCGTC 58.510 47.619 0.00 0.00 41.12 4.79
501 502 2.609921 GTCCCCCTTCGTTCCCCT 60.610 66.667 0.00 0.00 0.00 4.79
520 521 1.676438 TACACGCGCGAAATTCGGTC 61.676 55.000 39.36 0.16 40.84 4.79
547 548 0.313672 GTCGCAGGCCAATGTTTTCA 59.686 50.000 5.01 0.00 0.00 2.69
581 582 4.291047 CAGGAAGCTGCACGACAT 57.709 55.556 1.02 0.00 0.00 3.06
791 796 3.403881 GCTATAAGACGGCGGCGC 61.404 66.667 32.57 26.17 0.00 6.53
1053 1059 1.153881 GACCGTCGACCTGGTAAGC 60.154 63.158 14.20 0.48 38.99 3.09
1057 1063 1.885163 CGTCGACCTGGTAAGCCCTT 61.885 60.000 10.58 0.00 0.00 3.95
1058 1064 0.108281 GTCGACCTGGTAAGCCCTTC 60.108 60.000 3.51 0.00 0.00 3.46
1137 1144 0.944311 ACGTCTCGTGTGCATTGGAC 60.944 55.000 0.72 0.72 39.18 4.02
1151 1158 4.247258 GCATTGGACTGATTTGATTTGCA 58.753 39.130 0.00 0.00 0.00 4.08
1328 1335 1.302431 CATGTGGAACCCGCTGTCA 60.302 57.895 0.00 0.00 34.70 3.58
1687 1697 3.414700 GTCGCTGCCGGTGAACAG 61.415 66.667 1.90 2.38 36.11 3.16
1692 1702 1.671742 CTGCCGGTGAACAGGTACT 59.328 57.895 1.90 0.00 43.88 2.73
1712 1722 2.583441 CGGGCAGGAGGTGTTCTCA 61.583 63.158 0.00 0.00 44.19 3.27
3230 3364 0.391130 CGAAGCCGGACTCATGGAAA 60.391 55.000 5.05 0.00 0.00 3.13
3704 3980 0.685458 CAAGCTAAGCCCAAGCCCAT 60.685 55.000 0.00 0.00 41.02 4.00
3705 3981 0.685458 AAGCTAAGCCCAAGCCCATG 60.685 55.000 0.00 0.00 41.02 3.66
3706 3982 2.789715 GCTAAGCCCAAGCCCATGC 61.790 63.158 0.00 0.00 41.25 4.06
3707 3983 1.380246 CTAAGCCCAAGCCCATGCA 60.380 57.895 0.00 0.00 41.25 3.96
3709 3985 0.325484 TAAGCCCAAGCCCATGCATT 60.325 50.000 0.00 0.00 41.25 3.56
3710 3986 1.906105 AAGCCCAAGCCCATGCATTG 61.906 55.000 0.00 0.00 41.25 2.82
3711 3987 2.662070 GCCCAAGCCCATGCATTGT 61.662 57.895 0.00 0.00 41.13 2.71
3714 3990 1.271488 CCCAAGCCCATGCATTGTTTT 60.271 47.619 0.00 0.00 41.13 2.43
3717 3993 0.321830 AGCCCATGCATTGTTTTGCC 60.322 50.000 0.00 0.00 42.06 4.52
3718 3994 0.605860 GCCCATGCATTGTTTTGCCA 60.606 50.000 0.00 0.00 42.06 4.92
3720 3996 2.438411 CCCATGCATTGTTTTGCCAAT 58.562 42.857 0.00 0.00 42.06 3.16
4096 5410 3.440872 AGAACTACACCGTCTGATCTGAC 59.559 47.826 19.73 19.73 0.00 3.51
4138 5465 2.050350 CCGGAGAGGGTCGCTTGTA 61.050 63.158 0.00 0.00 35.97 2.41
4156 5483 1.195900 GTATTGCGTGGTTTTGAGCGA 59.804 47.619 0.00 0.00 0.00 4.93
4162 5489 1.457303 CGTGGTTTTGAGCGAGAAGAG 59.543 52.381 0.00 0.00 0.00 2.85
4163 5490 1.195674 GTGGTTTTGAGCGAGAAGAGC 59.804 52.381 0.00 0.00 0.00 4.09
4164 5491 1.202639 TGGTTTTGAGCGAGAAGAGCA 60.203 47.619 0.00 0.00 37.01 4.26
4165 5492 1.873591 GGTTTTGAGCGAGAAGAGCAA 59.126 47.619 0.00 0.00 37.01 3.91
4166 5493 2.485814 GGTTTTGAGCGAGAAGAGCAAT 59.514 45.455 0.00 0.00 37.01 3.56
4167 5494 3.486584 GTTTTGAGCGAGAAGAGCAATG 58.513 45.455 0.00 0.00 37.01 2.82
4168 5495 1.081892 TTGAGCGAGAAGAGCAATGC 58.918 50.000 0.00 0.00 37.01 3.56
4169 5496 0.248565 TGAGCGAGAAGAGCAATGCT 59.751 50.000 7.79 7.79 43.88 3.79
4170 5497 1.338484 TGAGCGAGAAGAGCAATGCTT 60.338 47.619 9.91 0.00 39.88 3.91
4196 5523 4.522022 ACTACAACTATGCCGGTATACCTC 59.478 45.833 19.68 11.49 0.00 3.85
4204 5533 1.067212 GCCGGTATACCTCTCTGTGTG 59.933 57.143 19.68 0.79 0.00 3.82
4207 5536 4.142790 CCGGTATACCTCTCTGTGTGTAT 58.857 47.826 19.68 0.00 0.00 2.29
4208 5537 5.311265 CCGGTATACCTCTCTGTGTGTATA 58.689 45.833 19.68 0.00 0.00 1.47
4212 5541 7.361031 CGGTATACCTCTCTGTGTGTATACATC 60.361 44.444 19.68 6.47 43.79 3.06
4218 5547 6.545666 CCTCTCTGTGTGTATACATCTCTCTT 59.454 42.308 9.18 0.00 39.39 2.85
4219 5548 7.717436 CCTCTCTGTGTGTATACATCTCTCTTA 59.283 40.741 9.18 0.00 39.39 2.10
4259 5588 4.710423 TCTTGTGCTCTCTATCTGACAC 57.290 45.455 0.00 0.00 0.00 3.67
4322 5651 5.879777 TCAACATTTTGTCTCTCTTGTCACA 59.120 36.000 0.00 0.00 34.02 3.58
4324 5653 6.757897 ACATTTTGTCTCTCTTGTCACAAA 57.242 33.333 0.00 0.00 37.04 2.83
4340 5669 2.810852 CACAAACCTCTTGCTTCTCTCC 59.189 50.000 0.00 0.00 0.00 3.71
4373 6542 6.388689 TCCCTCCCTAAACAAATATAAGAGCA 59.611 38.462 0.00 0.00 0.00 4.26
4443 6616 3.542648 GAGGGGGTACTATGAAAACTGC 58.457 50.000 0.00 0.00 0.00 4.40
4444 6617 2.093128 AGGGGGTACTATGAAAACTGCG 60.093 50.000 0.00 0.00 0.00 5.18
4445 6618 2.355412 GGGGGTACTATGAAAACTGCGT 60.355 50.000 0.00 0.00 0.00 5.24
4446 6619 2.676342 GGGGTACTATGAAAACTGCGTG 59.324 50.000 0.00 0.00 0.00 5.34
4447 6620 2.095372 GGGTACTATGAAAACTGCGTGC 59.905 50.000 0.00 0.00 0.00 5.34
4448 6621 2.222729 GGTACTATGAAAACTGCGTGCG 60.223 50.000 0.00 0.00 0.00 5.34
4449 6622 1.508632 ACTATGAAAACTGCGTGCGT 58.491 45.000 0.00 0.00 0.00 5.24
4450 6623 1.194547 ACTATGAAAACTGCGTGCGTG 59.805 47.619 0.00 0.00 0.00 5.34
4451 6624 1.194547 CTATGAAAACTGCGTGCGTGT 59.805 47.619 0.00 0.00 0.00 4.49
4452 6625 0.316937 ATGAAAACTGCGTGCGTGTG 60.317 50.000 0.00 0.00 0.00 3.82
4453 6626 1.061887 GAAAACTGCGTGCGTGTGT 59.938 52.632 0.00 0.00 0.00 3.72
4454 6627 1.193665 GAAAACTGCGTGCGTGTGTG 61.194 55.000 0.00 0.00 0.00 3.82
4455 6628 1.917782 AAAACTGCGTGCGTGTGTGT 61.918 50.000 0.00 0.00 0.00 3.72
4456 6629 2.576287 AAACTGCGTGCGTGTGTGTG 62.576 55.000 0.00 0.00 0.00 3.82
4457 6630 3.563088 CTGCGTGCGTGTGTGTGT 61.563 61.111 0.00 0.00 0.00 3.72
4458 6631 2.202756 TGCGTGCGTGTGTGTGTA 60.203 55.556 0.00 0.00 0.00 2.90
4459 6632 1.556591 CTGCGTGCGTGTGTGTGTAT 61.557 55.000 0.00 0.00 0.00 2.29
4460 6633 1.129809 GCGTGCGTGTGTGTGTATC 59.870 57.895 0.00 0.00 0.00 2.24
4461 6634 1.779061 CGTGCGTGTGTGTGTATCC 59.221 57.895 0.00 0.00 0.00 2.59
4462 6635 0.666274 CGTGCGTGTGTGTGTATCCT 60.666 55.000 0.00 0.00 0.00 3.24
4463 6636 0.790207 GTGCGTGTGTGTGTATCCTG 59.210 55.000 0.00 0.00 0.00 3.86
4610 6784 8.918202 ACACAAAAACTCATAAACCTCATCTA 57.082 30.769 0.00 0.00 0.00 1.98
4727 7377 9.452287 GGGTTTAGTAGATGTAAACATGGTTTA 57.548 33.333 0.00 0.00 40.64 2.01
4772 7422 3.294214 AGAGGGCATCAAAATGGTCATC 58.706 45.455 0.58 0.00 33.19 2.92
4798 7448 4.982999 ACACGACATCCATAGCGATATAC 58.017 43.478 0.00 0.00 0.00 1.47
4799 7449 4.457949 ACACGACATCCATAGCGATATACA 59.542 41.667 0.00 0.00 0.00 2.29
4822 7472 0.248621 GACTATTTGCCGTGCATGCC 60.249 55.000 16.68 5.63 38.76 4.40
4869 7519 4.406648 TCAGGTTTCGATATGATGCAGT 57.593 40.909 0.00 0.00 0.00 4.40
4888 7538 4.214332 GCAGTAGCCCTTCATATAAGCAAC 59.786 45.833 0.00 0.00 33.58 4.17
4900 7550 1.238439 TAAGCAACTGCACTGAAGGC 58.762 50.000 4.22 0.00 45.16 4.35
4908 7558 1.354506 GCACTGAAGGCATCGCATC 59.645 57.895 0.00 0.00 0.00 3.91
4911 7561 1.674441 CACTGAAGGCATCGCATCATT 59.326 47.619 0.00 0.00 0.00 2.57
4918 7568 2.158856 AGGCATCGCATCATTCTCTTGA 60.159 45.455 0.00 0.00 0.00 3.02
4946 7597 5.476983 TCCAACTCCCTGATACAATCCTAT 58.523 41.667 0.00 0.00 0.00 2.57
4958 7609 7.921304 TGATACAATCCTATGATAGCATGGTT 58.079 34.615 1.12 0.00 35.94 3.67
5034 7685 6.825721 AGGTGAATTCAGAAGGTATCATGTTC 59.174 38.462 8.80 0.00 0.00 3.18
5076 7727 1.616159 TGGCAGTTAGTTTTCCAGCC 58.384 50.000 0.00 0.00 40.93 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.073199 CCGGCCCAACTGAAGAGTT 59.927 57.895 0.00 0.00 43.63 3.01
16 17 3.264897 GCCTACTCGTGCATGCCG 61.265 66.667 16.68 17.91 0.00 5.69
20 21 2.808315 CTCGGCCTACTCGTGCAT 59.192 61.111 0.00 0.00 0.00 3.96
53 54 1.738099 CCACGAGAAGGCAAGTCGG 60.738 63.158 7.22 0.00 38.03 4.79
65 66 0.177836 TGACATGCATACCCCACGAG 59.822 55.000 0.00 0.00 0.00 4.18
87 88 2.224159 TTCTCCCCCTGTCAGTGGC 61.224 63.158 0.00 0.00 0.00 5.01
99 100 1.290134 ATTCACCCTCCAGTTCTCCC 58.710 55.000 0.00 0.00 0.00 4.30
102 103 4.597507 TCAGTTAATTCACCCTCCAGTTCT 59.402 41.667 0.00 0.00 0.00 3.01
143 144 3.051803 TCTCTCTCTCCCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
144 145 3.309296 TCTCTCTCTCCCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
145 146 3.051803 TCTCTCTCTCTCCCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
146 147 3.309296 TCTCTCTCTCTCCCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
147 148 3.051803 TCTCTCTCTCTCTCCCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
148 149 3.309296 TCTCTCTCTCTCTCCCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
149 150 3.421394 TCTCTCTCTCTCTCCCTCTCT 57.579 52.381 0.00 0.00 0.00 3.10
150 151 3.745797 GCTTCTCTCTCTCTCTCCCTCTC 60.746 56.522 0.00 0.00 0.00 3.20
157 158 1.408266 GGTCCGCTTCTCTCTCTCTCT 60.408 57.143 0.00 0.00 0.00 3.10
158 159 1.021968 GGTCCGCTTCTCTCTCTCTC 58.978 60.000 0.00 0.00 0.00 3.20
162 163 0.456995 CAACGGTCCGCTTCTCTCTC 60.457 60.000 12.28 0.00 0.00 3.20
164 165 1.446272 CCAACGGTCCGCTTCTCTC 60.446 63.158 12.28 0.00 0.00 3.20
168 169 0.446616 GAAATCCAACGGTCCGCTTC 59.553 55.000 12.28 1.44 0.00 3.86
173 174 2.351726 CTCGATTGAAATCCAACGGTCC 59.648 50.000 0.00 0.00 37.63 4.46
183 184 5.647658 TGTGCCTGAATTACTCGATTGAAAT 59.352 36.000 0.00 0.00 0.00 2.17
188 189 4.184629 GACTGTGCCTGAATTACTCGATT 58.815 43.478 0.00 0.00 0.00 3.34
190 191 2.560981 TGACTGTGCCTGAATTACTCGA 59.439 45.455 0.00 0.00 0.00 4.04
191 192 2.959516 TGACTGTGCCTGAATTACTCG 58.040 47.619 0.00 0.00 0.00 4.18
192 193 4.153117 CAGTTGACTGTGCCTGAATTACTC 59.847 45.833 2.98 0.00 39.09 2.59
193 194 4.067896 CAGTTGACTGTGCCTGAATTACT 58.932 43.478 2.98 0.00 39.09 2.24
194 195 4.065088 TCAGTTGACTGTGCCTGAATTAC 58.935 43.478 10.66 0.00 44.12 1.89
195 196 4.350368 TCAGTTGACTGTGCCTGAATTA 57.650 40.909 10.66 0.00 44.12 1.40
196 197 3.213206 TCAGTTGACTGTGCCTGAATT 57.787 42.857 10.66 0.00 44.12 2.17
197 198 2.936919 TCAGTTGACTGTGCCTGAAT 57.063 45.000 10.66 0.00 44.12 2.57
198 199 2.682856 GTTTCAGTTGACTGTGCCTGAA 59.317 45.455 10.66 8.48 44.12 3.02
199 200 2.092968 AGTTTCAGTTGACTGTGCCTGA 60.093 45.455 10.66 0.00 44.12 3.86
200 201 2.292267 AGTTTCAGTTGACTGTGCCTG 58.708 47.619 10.66 0.00 44.12 4.85
201 202 2.684881 CAAGTTTCAGTTGACTGTGCCT 59.315 45.455 10.66 3.06 44.12 4.75
202 203 2.423538 ACAAGTTTCAGTTGACTGTGCC 59.576 45.455 10.66 1.03 44.12 5.01
203 204 3.764885 ACAAGTTTCAGTTGACTGTGC 57.235 42.857 10.66 3.44 44.12 4.57
204 205 8.586273 CAAATTAACAAGTTTCAGTTGACTGTG 58.414 33.333 10.66 4.48 44.12 3.66
205 206 8.303876 ACAAATTAACAAGTTTCAGTTGACTGT 58.696 29.630 10.66 0.00 44.12 3.55
206 207 8.687824 ACAAATTAACAAGTTTCAGTTGACTG 57.312 30.769 4.77 4.77 45.08 3.51
207 208 9.353999 GAACAAATTAACAAGTTTCAGTTGACT 57.646 29.630 10.18 0.00 32.96 3.41
219 220 9.515020 TCTAGCAAAACTGAACAAATTAACAAG 57.485 29.630 0.00 0.00 0.00 3.16
222 223 9.516314 AGTTCTAGCAAAACTGAACAAATTAAC 57.484 29.630 0.00 0.00 38.15 2.01
225 226 7.771183 TGAGTTCTAGCAAAACTGAACAAATT 58.229 30.769 0.32 0.00 38.15 1.82
226 227 7.333528 TGAGTTCTAGCAAAACTGAACAAAT 57.666 32.000 0.32 0.00 38.15 2.32
227 228 6.751514 TGAGTTCTAGCAAAACTGAACAAA 57.248 33.333 0.32 0.00 38.15 2.83
228 229 6.767902 AGATGAGTTCTAGCAAAACTGAACAA 59.232 34.615 0.32 0.00 38.15 2.83
229 230 6.291377 AGATGAGTTCTAGCAAAACTGAACA 58.709 36.000 0.32 0.00 38.15 3.18
230 231 6.793492 AGATGAGTTCTAGCAAAACTGAAC 57.207 37.500 0.32 0.00 37.10 3.18
267 268 9.851686 TGGCTATAAAATGTGAATGAGACTAAT 57.148 29.630 0.00 0.00 0.00 1.73
268 269 9.851686 ATGGCTATAAAATGTGAATGAGACTAA 57.148 29.630 0.00 0.00 0.00 2.24
269 270 9.851686 AATGGCTATAAAATGTGAATGAGACTA 57.148 29.630 0.00 0.00 0.00 2.59
270 271 8.627403 CAATGGCTATAAAATGTGAATGAGACT 58.373 33.333 0.00 0.00 0.00 3.24
271 272 7.864379 CCAATGGCTATAAAATGTGAATGAGAC 59.136 37.037 0.00 0.00 0.00 3.36
272 273 7.779326 TCCAATGGCTATAAAATGTGAATGAGA 59.221 33.333 0.00 0.00 0.00 3.27
273 274 7.944061 TCCAATGGCTATAAAATGTGAATGAG 58.056 34.615 0.00 0.00 0.00 2.90
274 275 7.894753 TCCAATGGCTATAAAATGTGAATGA 57.105 32.000 0.00 0.00 0.00 2.57
275 276 8.145767 ACATCCAATGGCTATAAAATGTGAATG 58.854 33.333 0.00 0.00 33.60 2.67
276 277 8.145767 CACATCCAATGGCTATAAAATGTGAAT 58.854 33.333 17.80 0.00 43.26 2.57
277 278 7.341512 TCACATCCAATGGCTATAAAATGTGAA 59.658 33.333 21.02 10.18 45.04 3.18
278 279 6.832900 TCACATCCAATGGCTATAAAATGTGA 59.167 34.615 20.02 20.02 45.52 3.58
279 280 7.041635 TCACATCCAATGGCTATAAAATGTG 57.958 36.000 17.00 17.00 42.42 3.21
280 281 7.663827 CATCACATCCAATGGCTATAAAATGT 58.336 34.615 0.00 0.00 33.60 2.71
281 282 6.588756 GCATCACATCCAATGGCTATAAAATG 59.411 38.462 0.00 0.00 33.60 2.32
282 283 6.495872 AGCATCACATCCAATGGCTATAAAAT 59.504 34.615 0.00 0.00 33.60 1.82
283 284 5.834742 AGCATCACATCCAATGGCTATAAAA 59.165 36.000 0.00 0.00 33.60 1.52
284 285 5.387788 AGCATCACATCCAATGGCTATAAA 58.612 37.500 0.00 0.00 33.60 1.40
285 286 4.989277 AGCATCACATCCAATGGCTATAA 58.011 39.130 0.00 0.00 33.60 0.98
286 287 4.645863 AGCATCACATCCAATGGCTATA 57.354 40.909 0.00 0.00 33.60 1.31
287 288 3.520691 AGCATCACATCCAATGGCTAT 57.479 42.857 0.00 0.00 33.60 2.97
288 289 4.645863 ATAGCATCACATCCAATGGCTA 57.354 40.909 0.00 0.00 33.60 3.93
289 290 3.520691 ATAGCATCACATCCAATGGCT 57.479 42.857 0.00 0.00 33.60 4.75
290 291 5.005740 TCTTATAGCATCACATCCAATGGC 58.994 41.667 0.00 0.00 33.60 4.40
291 292 6.404403 GCATCTTATAGCATCACATCCAATGG 60.404 42.308 0.00 0.00 33.60 3.16
292 293 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
293 294 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
294 295 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
295 296 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
296 297 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
297 298 4.687948 ACACGCATCTTATAGCATCACATC 59.312 41.667 0.00 0.00 0.00 3.06
298 299 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
299 300 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
300 301 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
301 302 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
302 303 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
303 304 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
304 305 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
305 306 2.205074 AGCACACACGCATCTTATAGC 58.795 47.619 0.00 0.00 0.00 2.97
306 307 4.085568 CGTTAGCACACACGCATCTTATAG 60.086 45.833 0.00 0.00 0.00 1.31
307 308 3.794564 CGTTAGCACACACGCATCTTATA 59.205 43.478 0.00 0.00 0.00 0.98
308 309 2.603110 CGTTAGCACACACGCATCTTAT 59.397 45.455 0.00 0.00 0.00 1.73
309 310 1.989864 CGTTAGCACACACGCATCTTA 59.010 47.619 0.00 0.00 0.00 2.10
310 311 0.790207 CGTTAGCACACACGCATCTT 59.210 50.000 0.00 0.00 0.00 2.40
311 312 0.319555 ACGTTAGCACACACGCATCT 60.320 50.000 0.00 0.00 40.16 2.90
312 313 0.179250 CACGTTAGCACACACGCATC 60.179 55.000 0.00 0.00 40.16 3.91
313 314 1.565156 CCACGTTAGCACACACGCAT 61.565 55.000 0.00 0.00 40.16 4.73
314 315 2.241190 CCACGTTAGCACACACGCA 61.241 57.895 0.00 0.00 40.16 5.24
315 316 2.549282 CCACGTTAGCACACACGC 59.451 61.111 0.00 0.00 40.16 5.34
316 317 1.155424 AACCCACGTTAGCACACACG 61.155 55.000 0.00 0.00 42.29 4.49
317 318 1.018910 AAACCCACGTTAGCACACAC 58.981 50.000 0.00 0.00 0.00 3.82
318 319 1.752683 AAAACCCACGTTAGCACACA 58.247 45.000 0.00 0.00 0.00 3.72
319 320 3.749609 AGATAAAACCCACGTTAGCACAC 59.250 43.478 0.00 0.00 0.00 3.82
320 321 3.749088 CAGATAAAACCCACGTTAGCACA 59.251 43.478 0.00 0.00 0.00 4.57
321 322 3.749609 ACAGATAAAACCCACGTTAGCAC 59.250 43.478 0.00 0.00 0.00 4.40
322 323 4.010667 ACAGATAAAACCCACGTTAGCA 57.989 40.909 0.00 0.00 0.00 3.49
323 324 5.366829 AAACAGATAAAACCCACGTTAGC 57.633 39.130 0.00 0.00 0.00 3.09
324 325 7.197703 ACAAAAACAGATAAAACCCACGTTAG 58.802 34.615 0.00 0.00 0.00 2.34
325 326 7.098074 ACAAAAACAGATAAAACCCACGTTA 57.902 32.000 0.00 0.00 0.00 3.18
326 327 5.968254 ACAAAAACAGATAAAACCCACGTT 58.032 33.333 0.00 0.00 0.00 3.99
327 328 5.585820 ACAAAAACAGATAAAACCCACGT 57.414 34.783 0.00 0.00 0.00 4.49
328 329 6.895607 AAACAAAAACAGATAAAACCCACG 57.104 33.333 0.00 0.00 0.00 4.94
329 330 7.334671 TGGAAAACAAAAACAGATAAAACCCAC 59.665 33.333 0.00 0.00 0.00 4.61
330 331 7.394816 TGGAAAACAAAAACAGATAAAACCCA 58.605 30.769 0.00 0.00 0.00 4.51
331 332 7.851387 TGGAAAACAAAAACAGATAAAACCC 57.149 32.000 0.00 0.00 0.00 4.11
332 333 8.888716 ACATGGAAAACAAAAACAGATAAAACC 58.111 29.630 0.00 0.00 0.00 3.27
333 334 9.701355 CACATGGAAAACAAAAACAGATAAAAC 57.299 29.630 0.00 0.00 0.00 2.43
334 335 9.658799 TCACATGGAAAACAAAAACAGATAAAA 57.341 25.926 0.00 0.00 0.00 1.52
335 336 9.658799 TTCACATGGAAAACAAAAACAGATAAA 57.341 25.926 0.00 0.00 30.98 1.40
336 337 9.829507 ATTCACATGGAAAACAAAAACAGATAA 57.170 25.926 0.00 0.00 39.39 1.75
337 338 9.258826 CATTCACATGGAAAACAAAAACAGATA 57.741 29.630 0.00 0.00 39.39 1.98
338 339 7.986320 TCATTCACATGGAAAACAAAAACAGAT 59.014 29.630 0.00 0.00 39.39 2.90
339 340 7.326454 TCATTCACATGGAAAACAAAAACAGA 58.674 30.769 0.00 0.00 39.39 3.41
340 341 7.492020 TCTCATTCACATGGAAAACAAAAACAG 59.508 33.333 0.00 0.00 39.39 3.16
341 342 7.277539 GTCTCATTCACATGGAAAACAAAAACA 59.722 33.333 0.00 0.00 39.39 2.83
342 343 7.254421 GGTCTCATTCACATGGAAAACAAAAAC 60.254 37.037 0.00 0.00 39.39 2.43
343 344 6.760770 GGTCTCATTCACATGGAAAACAAAAA 59.239 34.615 0.00 0.00 39.39 1.94
344 345 6.127225 TGGTCTCATTCACATGGAAAACAAAA 60.127 34.615 0.00 0.00 39.39 2.44
345 346 5.362143 TGGTCTCATTCACATGGAAAACAAA 59.638 36.000 0.00 0.00 39.39 2.83
346 347 4.892345 TGGTCTCATTCACATGGAAAACAA 59.108 37.500 0.00 0.00 39.39 2.83
347 348 4.468713 TGGTCTCATTCACATGGAAAACA 58.531 39.130 0.00 0.00 39.39 2.83
348 349 5.452078 TTGGTCTCATTCACATGGAAAAC 57.548 39.130 0.00 0.00 39.39 2.43
349 350 6.669125 ATTTGGTCTCATTCACATGGAAAA 57.331 33.333 0.00 0.00 39.39 2.29
350 351 6.669125 AATTTGGTCTCATTCACATGGAAA 57.331 33.333 0.00 0.00 39.39 3.13
351 352 7.773489 TTAATTTGGTCTCATTCACATGGAA 57.227 32.000 0.00 0.00 40.46 3.53
352 353 7.773489 TTTAATTTGGTCTCATTCACATGGA 57.227 32.000 0.00 0.00 0.00 3.41
353 354 8.472413 AGATTTAATTTGGTCTCATTCACATGG 58.528 33.333 0.00 0.00 0.00 3.66
354 355 9.865321 AAGATTTAATTTGGTCTCATTCACATG 57.135 29.630 0.00 0.00 0.00 3.21
397 398 8.050930 TGGAAAGATAACAAATTAGGGAGTACC 58.949 37.037 0.00 0.00 40.67 3.34
398 399 9.110502 CTGGAAAGATAACAAATTAGGGAGTAC 57.889 37.037 0.00 0.00 0.00 2.73
399 400 8.832735 ACTGGAAAGATAACAAATTAGGGAGTA 58.167 33.333 0.00 0.00 0.00 2.59
400 401 7.699878 ACTGGAAAGATAACAAATTAGGGAGT 58.300 34.615 0.00 0.00 0.00 3.85
401 402 8.462016 CAACTGGAAAGATAACAAATTAGGGAG 58.538 37.037 0.00 0.00 0.00 4.30
402 403 8.167392 TCAACTGGAAAGATAACAAATTAGGGA 58.833 33.333 0.00 0.00 0.00 4.20
403 404 8.244113 GTCAACTGGAAAGATAACAAATTAGGG 58.756 37.037 0.00 0.00 0.00 3.53
404 405 9.014297 AGTCAACTGGAAAGATAACAAATTAGG 57.986 33.333 0.00 0.00 0.00 2.69
405 406 9.831737 CAGTCAACTGGAAAGATAACAAATTAG 57.168 33.333 2.08 0.00 40.20 1.73
437 438 2.976284 AAAGTGACCTCCCGTCCCCA 62.976 60.000 0.00 0.00 41.18 4.96
438 439 2.181445 GAAAGTGACCTCCCGTCCCC 62.181 65.000 0.00 0.00 41.18 4.81
439 440 1.192803 AGAAAGTGACCTCCCGTCCC 61.193 60.000 0.00 0.00 41.18 4.46
444 445 0.246910 GGACGAGAAAGTGACCTCCC 59.753 60.000 0.00 0.00 0.00 4.30
464 465 3.486383 ACGGTGTTCAATCACTTCCATT 58.514 40.909 0.00 0.00 38.28 3.16
466 467 2.489971 GACGGTGTTCAATCACTTCCA 58.510 47.619 0.00 0.00 38.28 3.53
472 473 1.131303 AGGGGGACGGTGTTCAATCA 61.131 55.000 0.00 0.00 0.00 2.57
473 474 0.037734 AAGGGGGACGGTGTTCAATC 59.962 55.000 0.00 0.00 0.00 2.67
474 475 0.037734 GAAGGGGGACGGTGTTCAAT 59.962 55.000 0.00 0.00 0.00 2.57
476 477 2.874664 CGAAGGGGGACGGTGTTCA 61.875 63.158 0.00 0.00 0.00 3.18
477 478 2.047560 CGAAGGGGGACGGTGTTC 60.048 66.667 0.00 0.00 0.00 3.18
479 480 2.845795 AACGAAGGGGGACGGTGT 60.846 61.111 0.00 0.00 0.00 4.16
480 481 2.047560 GAACGAAGGGGGACGGTG 60.048 66.667 0.00 0.00 0.00 4.94
481 482 3.316760 GGAACGAAGGGGGACGGT 61.317 66.667 0.00 0.00 0.00 4.83
483 484 4.091939 GGGGAACGAAGGGGGACG 62.092 72.222 0.00 0.00 0.00 4.79
484 485 1.306397 TAGGGGAACGAAGGGGGAC 60.306 63.158 0.00 0.00 0.00 4.46
485 486 1.306397 GTAGGGGAACGAAGGGGGA 60.306 63.158 0.00 0.00 0.00 4.81
486 487 1.614226 TGTAGGGGAACGAAGGGGG 60.614 63.158 0.00 0.00 0.00 5.40
501 502 1.676438 GACCGAATTTCGCGCGTGTA 61.676 55.000 30.98 16.34 38.82 2.90
523 524 0.745845 ACATTGGCCTGCGACATCTC 60.746 55.000 3.32 0.00 0.00 2.75
535 536 0.881118 TCTCGGCTGAAAACATTGGC 59.119 50.000 0.00 0.00 0.00 4.52
581 582 4.812476 CGTGGCCGGATGAGCGAA 62.812 66.667 5.05 0.00 0.00 4.70
623 624 3.869272 CGTCCTTCCTGCATGCGC 61.869 66.667 14.09 0.00 39.24 6.09
716 717 3.049674 CATGAGGGTTGCGTGCGT 61.050 61.111 0.00 0.00 0.00 5.24
795 800 4.552365 ATGCGGGGAGGTGATGCG 62.552 66.667 0.00 0.00 0.00 4.73
796 801 2.124151 AATGCGGGGAGGTGATGC 60.124 61.111 0.00 0.00 0.00 3.91
948 953 1.696063 TTATTCCGGGCTAGCTACGT 58.304 50.000 23.54 12.72 0.00 3.57
1053 1059 1.562008 GGAAGGAAGGAAGGAGAAGGG 59.438 57.143 0.00 0.00 0.00 3.95
1057 1063 1.853963 CGAGGAAGGAAGGAAGGAGA 58.146 55.000 0.00 0.00 0.00 3.71
1058 1064 0.176910 GCGAGGAAGGAAGGAAGGAG 59.823 60.000 0.00 0.00 0.00 3.69
1088 1094 4.640201 GGATCAATGGAGGAATGAAACGAA 59.360 41.667 0.00 0.00 0.00 3.85
1091 1097 3.243201 GCGGATCAATGGAGGAATGAAAC 60.243 47.826 0.00 0.00 0.00 2.78
1094 1100 1.202806 GGCGGATCAATGGAGGAATGA 60.203 52.381 0.00 0.00 0.00 2.57
1096 1102 1.143813 AGGCGGATCAATGGAGGAAT 58.856 50.000 0.00 0.00 0.00 3.01
1151 1158 1.263217 GTCACCGTCGACTGCAAAATT 59.737 47.619 14.70 0.00 32.92 1.82
1207 1214 4.168291 CCTCGCTCAGCCCCTTCC 62.168 72.222 0.00 0.00 0.00 3.46
1328 1335 1.757306 GGCGATCTCCATGACCCAT 59.243 57.895 0.00 0.00 0.00 4.00
1692 1702 3.319198 GAACACCTCCTGCCCGGA 61.319 66.667 0.73 0.00 40.30 5.14
1712 1722 3.241530 TGCTTCACCGTGGAGCCT 61.242 61.111 26.00 0.00 0.00 4.58
2312 2428 2.448931 TCCACCGGGTTGAAGGGT 60.449 61.111 6.32 0.00 34.93 4.34
2570 2692 2.711922 CCTCGGAGGGTCGAACAGG 61.712 68.421 16.59 0.00 38.77 4.00
3224 3358 4.035278 GAAGATCTCGTCGAGTTTCCAT 57.965 45.455 21.15 7.57 0.00 3.41
3354 3630 4.003788 CTGCCGGTCGTTGTCCCT 62.004 66.667 1.90 0.00 0.00 4.20
3741 4017 4.690719 AACAATGGCGACGGCGGA 62.691 61.111 15.06 0.00 41.24 5.54
3829 4111 2.028748 GCCGTAGTCCTTCTTGTTGGTA 60.029 50.000 0.00 0.00 0.00 3.25
4096 5410 3.197790 CACCGGAGCAGCAATCGG 61.198 66.667 9.46 16.32 46.95 4.18
4132 5452 2.979813 CTCAAAACCACGCAATACAAGC 59.020 45.455 0.00 0.00 0.00 4.01
4138 5465 0.238289 CTCGCTCAAAACCACGCAAT 59.762 50.000 0.00 0.00 0.00 3.56
4151 5478 1.062294 CAAGCATTGCTCTTCTCGCTC 59.938 52.381 12.39 0.00 40.39 5.03
4164 5491 4.570772 CGGCATAGTTGTAGTACAAGCATT 59.429 41.667 16.03 5.45 39.00 3.56
4165 5492 4.119862 CGGCATAGTTGTAGTACAAGCAT 58.880 43.478 16.03 9.29 39.00 3.79
4166 5493 3.517602 CGGCATAGTTGTAGTACAAGCA 58.482 45.455 16.03 7.38 39.00 3.91
4167 5494 2.864343 CCGGCATAGTTGTAGTACAAGC 59.136 50.000 16.03 14.72 39.00 4.01
4168 5495 4.119442 ACCGGCATAGTTGTAGTACAAG 57.881 45.455 16.03 5.87 39.00 3.16
4169 5496 5.857471 ATACCGGCATAGTTGTAGTACAA 57.143 39.130 11.75 11.75 35.42 2.41
4170 5497 5.241506 GGTATACCGGCATAGTTGTAGTACA 59.758 44.000 6.06 0.00 0.00 2.90
4196 5523 8.445275 AGTAAGAGAGATGTATACACACAGAG 57.555 38.462 7.96 0.00 37.54 3.35
4204 5533 7.041030 TGCAGCAGTAGTAAGAGAGATGTATAC 60.041 40.741 0.00 0.00 0.00 1.47
4207 5536 5.193679 TGCAGCAGTAGTAAGAGAGATGTA 58.806 41.667 0.00 0.00 0.00 2.29
4208 5537 4.019858 TGCAGCAGTAGTAAGAGAGATGT 58.980 43.478 0.00 0.00 0.00 3.06
4212 5541 4.582656 ACCTATGCAGCAGTAGTAAGAGAG 59.417 45.833 0.00 0.00 0.00 3.20
4218 5547 5.677319 AGAAAACCTATGCAGCAGTAGTA 57.323 39.130 0.00 0.00 0.00 1.82
4219 5548 4.559862 AGAAAACCTATGCAGCAGTAGT 57.440 40.909 0.00 0.00 0.00 2.73
4259 5588 6.873997 TCCCACACACTTGTATTACAGATAG 58.126 40.000 0.00 0.00 33.30 2.08
4322 5651 2.039613 CAGGGAGAGAAGCAAGAGGTTT 59.960 50.000 0.00 0.00 35.19 3.27
4324 5653 1.274712 CAGGGAGAGAAGCAAGAGGT 58.725 55.000 0.00 0.00 0.00 3.85
4340 5669 1.763545 GTTTAGGGAGGGAGTAGCAGG 59.236 57.143 0.00 0.00 0.00 4.85
4406 6578 4.596212 ACCCCCTCCGTAAAGAATATAAGG 59.404 45.833 0.00 0.00 0.00 2.69
4443 6616 0.666274 AGGATACACACACACGCACG 60.666 55.000 0.00 0.00 41.41 5.34
4444 6617 0.790207 CAGGATACACACACACGCAC 59.210 55.000 0.00 0.00 41.41 5.34
4445 6618 0.320334 CCAGGATACACACACACGCA 60.320 55.000 0.00 0.00 41.41 5.24
4446 6619 1.635663 GCCAGGATACACACACACGC 61.636 60.000 0.00 0.00 41.41 5.34
4447 6620 0.037326 AGCCAGGATACACACACACG 60.037 55.000 0.00 0.00 41.41 4.49
4448 6621 3.328382 TTAGCCAGGATACACACACAC 57.672 47.619 0.00 0.00 41.41 3.82
4449 6622 3.872696 CATTAGCCAGGATACACACACA 58.127 45.455 0.00 0.00 41.41 3.72
4450 6623 2.614057 GCATTAGCCAGGATACACACAC 59.386 50.000 0.00 0.00 34.22 3.82
4451 6624 2.238395 TGCATTAGCCAGGATACACACA 59.762 45.455 0.00 0.00 41.13 3.72
4452 6625 2.614057 GTGCATTAGCCAGGATACACAC 59.386 50.000 0.00 0.00 41.13 3.82
4453 6626 2.421388 GGTGCATTAGCCAGGATACACA 60.421 50.000 6.36 0.00 41.13 3.72
4454 6627 2.158755 AGGTGCATTAGCCAGGATACAC 60.159 50.000 0.00 0.00 41.13 2.90
4455 6628 2.104792 GAGGTGCATTAGCCAGGATACA 59.895 50.000 0.00 0.00 41.13 2.29
4456 6629 2.551071 GGAGGTGCATTAGCCAGGATAC 60.551 54.545 0.00 0.00 41.13 2.24
4457 6630 1.699634 GGAGGTGCATTAGCCAGGATA 59.300 52.381 0.00 0.00 41.13 2.59
4458 6631 0.475906 GGAGGTGCATTAGCCAGGAT 59.524 55.000 0.00 0.00 41.13 3.24
4459 6632 0.621571 AGGAGGTGCATTAGCCAGGA 60.622 55.000 0.00 0.00 41.13 3.86
4460 6633 1.131638 TAGGAGGTGCATTAGCCAGG 58.868 55.000 0.00 0.00 41.13 4.45
4461 6634 1.486310 TGTAGGAGGTGCATTAGCCAG 59.514 52.381 0.00 0.00 41.13 4.85
4462 6635 1.578897 TGTAGGAGGTGCATTAGCCA 58.421 50.000 0.00 0.00 41.13 4.75
4463 6636 2.551071 GGATGTAGGAGGTGCATTAGCC 60.551 54.545 0.00 0.00 41.13 3.93
4610 6784 4.039973 TCGTGTTTCTGTAAACCTGAGGAT 59.960 41.667 4.99 0.00 43.66 3.24
4727 7377 2.084546 GGAAGCTTGGTTAAGACGCAT 58.915 47.619 2.10 0.00 35.92 4.73
4772 7422 0.301687 GCTATGGATGTCGTGTTGCG 59.698 55.000 0.00 0.00 43.01 4.85
4798 7448 1.468127 TGCACGGCAAATAGTCACATG 59.532 47.619 0.00 0.00 34.76 3.21
4799 7449 1.819928 TGCACGGCAAATAGTCACAT 58.180 45.000 0.00 0.00 34.76 3.21
4838 7488 6.984474 TCATATCGAAACCTGAAACCATACTC 59.016 38.462 0.00 0.00 0.00 2.59
4841 7491 6.204688 GCATCATATCGAAACCTGAAACCATA 59.795 38.462 0.00 0.00 0.00 2.74
4869 7519 4.141505 TGCAGTTGCTTATATGAAGGGCTA 60.142 41.667 5.62 0.00 42.66 3.93
4888 7538 1.374343 ATGCGATGCCTTCAGTGCAG 61.374 55.000 0.00 0.00 42.92 4.41
4900 7550 5.231702 AGAGATCAAGAGAATGATGCGATG 58.768 41.667 0.00 0.00 40.08 3.84
4908 7558 5.358922 GGAGTTGGAGAGATCAAGAGAATG 58.641 45.833 0.00 0.00 0.00 2.67
4911 7561 3.012274 AGGGAGTTGGAGAGATCAAGAGA 59.988 47.826 0.00 0.00 0.00 3.10
4918 7568 4.271807 TGTATCAGGGAGTTGGAGAGAT 57.728 45.455 0.00 0.00 0.00 2.75
4946 7597 5.007921 CGTGATTCATTCAACCATGCTATCA 59.992 40.000 0.00 0.00 35.70 2.15
4958 7609 6.419710 GTGAATACCGTATCGTGATTCATTCA 59.580 38.462 14.25 0.00 38.43 2.57
5034 7685 3.607741 AGCTGTGATTTCCAGTGATGAG 58.392 45.455 0.00 0.00 32.41 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.