Multiple sequence alignment - TraesCS7B01G046800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G046800 chr7B 100.000 3211 0 0 1 3211 45503486 45500276 0.000000e+00 5930.0
1 TraesCS7B01G046800 chr7B 91.900 963 60 10 2265 3211 307509878 307508918 0.000000e+00 1330.0
2 TraesCS7B01G046800 chr7B 96.678 301 8 2 1 300 79094155 79094454 1.720000e-137 499.0
3 TraesCS7B01G046800 chr7B 96.000 300 11 1 1 299 671272898 671273197 1.340000e-133 486.0
4 TraesCS7B01G046800 chr7B 95.987 299 11 1 1 299 482025689 482025392 4.820000e-133 484.0
5 TraesCS7B01G046800 chr7B 75.869 518 98 24 1589 2096 56907484 56906984 4.140000e-59 239.0
6 TraesCS7B01G046800 chr7B 90.476 84 7 1 299 381 159300382 159300465 3.390000e-20 110.0
7 TraesCS7B01G046800 chr1B 92.593 2916 191 12 299 3211 674190359 674187466 0.000000e+00 4165.0
8 TraesCS7B01G046800 chr1B 91.667 948 66 11 2265 3211 30719067 30720002 0.000000e+00 1301.0
9 TraesCS7B01G046800 chr1B 90.447 963 71 12 2265 3211 54303102 54302145 0.000000e+00 1249.0
10 TraesCS7B01G046800 chr1B 95.652 299 12 1 1 299 16651886 16652183 2.240000e-131 479.0
11 TraesCS7B01G046800 chr1B 86.349 315 34 7 613 925 308316693 308316386 5.130000e-88 335.0
12 TraesCS7B01G046800 chr1B 86.014 286 37 3 2222 2505 689278705 689278421 1.450000e-78 303.0
13 TraesCS7B01G046800 chr1B 88.591 149 15 2 1649 1796 649102865 649103012 2.550000e-41 180.0
14 TraesCS7B01G046800 chr2A 89.068 2854 259 40 299 3119 216106354 216109187 0.000000e+00 3493.0
15 TraesCS7B01G046800 chr2A 90.084 474 44 3 1894 2365 132124051 132124523 2.120000e-171 612.0
16 TraesCS7B01G046800 chr2A 81.792 346 57 6 1773 2115 612696401 612696743 5.240000e-73 285.0
17 TraesCS7B01G046800 chr2A 80.682 88 16 1 1680 1766 14687638 14687551 2.070000e-07 67.6
18 TraesCS7B01G046800 chr4A 90.633 2466 208 20 430 2880 156392221 156394678 0.000000e+00 3253.0
19 TraesCS7B01G046800 chr4A 85.069 288 36 7 2221 2505 190624625 190624908 1.460000e-73 287.0
20 TraesCS7B01G046800 chr4A 90.977 133 12 0 299 431 156384852 156384984 2.550000e-41 180.0
21 TraesCS7B01G046800 chr3A 86.537 1233 154 9 580 1805 294866935 294868162 0.000000e+00 1347.0
22 TraesCS7B01G046800 chr3A 91.996 962 60 9 2265 3211 164466361 164467320 0.000000e+00 1334.0
23 TraesCS7B01G046800 chr3A 83.732 418 53 8 1298 1705 252880147 252880559 6.500000e-102 381.0
24 TraesCS7B01G046800 chr3A 88.514 148 17 0 1552 1699 633625637 633625784 2.550000e-41 180.0
25 TraesCS7B01G046800 chr7A 91.155 961 68 10 2265 3211 79311645 79312602 0.000000e+00 1288.0
26 TraesCS7B01G046800 chr4B 91.060 962 69 9 2265 3211 158182789 158183748 0.000000e+00 1284.0
27 TraesCS7B01G046800 chr4B 96.990 299 9 0 1 299 114570146 114569848 1.330000e-138 503.0
28 TraesCS7B01G046800 chr4B 96.013 301 11 1 1 300 36653347 36653647 3.720000e-134 488.0
29 TraesCS7B01G046800 chr5B 91.146 960 62 12 2265 3209 280949916 280950867 0.000000e+00 1280.0
30 TraesCS7B01G046800 chr5B 96.667 300 9 1 1 299 689952638 689952937 6.190000e-137 497.0
31 TraesCS7B01G046800 chr6B 90.748 962 71 10 2266 3211 643017857 643016898 0.000000e+00 1267.0
32 TraesCS7B01G046800 chr5A 84.517 1253 148 38 1896 3119 177848559 177847324 0.000000e+00 1197.0
33 TraesCS7B01G046800 chr5A 75.479 261 55 7 1680 1934 589728210 589728467 5.630000e-23 119.0
34 TraesCS7B01G046800 chr3D 84.697 1222 143 30 910 2115 141118719 141117526 0.000000e+00 1181.0
35 TraesCS7B01G046800 chr3D 78.431 255 47 7 1558 1805 130863678 130863931 3.320000e-35 159.0
36 TraesCS7B01G046800 chr2B 85.592 583 79 4 1789 2368 567600766 567601346 9.850000e-170 606.0
37 TraesCS7B01G046800 chr2B 85.421 535 68 8 1946 2475 215927958 215928487 6.060000e-152 547.0
38 TraesCS7B01G046800 chr2B 96.321 299 10 1 1 299 745694172 745694469 1.040000e-134 490.0
39 TraesCS7B01G046800 chr6A 84.629 579 85 4 1894 2470 227185252 227184676 9.990000e-160 573.0
40 TraesCS7B01G046800 chr6A 85.792 183 18 5 1432 1607 526970639 526970458 1.520000e-43 187.0
41 TraesCS7B01G046800 chr6A 87.097 124 14 2 443 565 99129456 99129334 4.320000e-29 139.0
42 TraesCS7B01G046800 chr3B 84.091 572 81 10 1803 2368 541041298 541040731 7.830000e-151 544.0
43 TraesCS7B01G046800 chr3B 97.000 300 8 1 1 300 14696315 14696017 1.330000e-138 503.0
44 TraesCS7B01G046800 chr2D 86.280 328 41 4 580 906 188182294 188181970 1.420000e-93 353.0
45 TraesCS7B01G046800 chr2D 84.884 258 37 2 309 565 188182664 188182408 3.180000e-65 259.0
46 TraesCS7B01G046800 chr2D 85.311 177 26 0 749 925 178084739 178084563 1.970000e-42 183.0
47 TraesCS7B01G046800 chr5D 83.562 365 35 14 2222 2582 361431629 361431972 5.170000e-83 318.0
48 TraesCS7B01G046800 chr5D 82.292 96 13 3 586 679 83706363 83706456 2.660000e-11 80.5
49 TraesCS7B01G046800 chr7D 82.796 279 38 10 570 846 533786684 533786954 1.150000e-59 241.0
50 TraesCS7B01G046800 chr7D 81.250 96 14 3 586 679 452885184 452885091 1.240000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G046800 chr7B 45500276 45503486 3210 True 5930 5930 100.000 1 3211 1 chr7B.!!$R1 3210
1 TraesCS7B01G046800 chr7B 307508918 307509878 960 True 1330 1330 91.900 2265 3211 1 chr7B.!!$R3 946
2 TraesCS7B01G046800 chr7B 56906984 56907484 500 True 239 239 75.869 1589 2096 1 chr7B.!!$R2 507
3 TraesCS7B01G046800 chr1B 674187466 674190359 2893 True 4165 4165 92.593 299 3211 1 chr1B.!!$R3 2912
4 TraesCS7B01G046800 chr1B 30719067 30720002 935 False 1301 1301 91.667 2265 3211 1 chr1B.!!$F2 946
5 TraesCS7B01G046800 chr1B 54302145 54303102 957 True 1249 1249 90.447 2265 3211 1 chr1B.!!$R1 946
6 TraesCS7B01G046800 chr2A 216106354 216109187 2833 False 3493 3493 89.068 299 3119 1 chr2A.!!$F2 2820
7 TraesCS7B01G046800 chr4A 156392221 156394678 2457 False 3253 3253 90.633 430 2880 1 chr4A.!!$F2 2450
8 TraesCS7B01G046800 chr3A 294866935 294868162 1227 False 1347 1347 86.537 580 1805 1 chr3A.!!$F3 1225
9 TraesCS7B01G046800 chr3A 164466361 164467320 959 False 1334 1334 91.996 2265 3211 1 chr3A.!!$F1 946
10 TraesCS7B01G046800 chr7A 79311645 79312602 957 False 1288 1288 91.155 2265 3211 1 chr7A.!!$F1 946
11 TraesCS7B01G046800 chr4B 158182789 158183748 959 False 1284 1284 91.060 2265 3211 1 chr4B.!!$F2 946
12 TraesCS7B01G046800 chr5B 280949916 280950867 951 False 1280 1280 91.146 2265 3209 1 chr5B.!!$F1 944
13 TraesCS7B01G046800 chr6B 643016898 643017857 959 True 1267 1267 90.748 2266 3211 1 chr6B.!!$R1 945
14 TraesCS7B01G046800 chr5A 177847324 177848559 1235 True 1197 1197 84.517 1896 3119 1 chr5A.!!$R1 1223
15 TraesCS7B01G046800 chr3D 141117526 141118719 1193 True 1181 1181 84.697 910 2115 1 chr3D.!!$R1 1205
16 TraesCS7B01G046800 chr2B 567600766 567601346 580 False 606 606 85.592 1789 2368 1 chr2B.!!$F2 579
17 TraesCS7B01G046800 chr2B 215927958 215928487 529 False 547 547 85.421 1946 2475 1 chr2B.!!$F1 529
18 TraesCS7B01G046800 chr6A 227184676 227185252 576 True 573 573 84.629 1894 2470 1 chr6A.!!$R2 576
19 TraesCS7B01G046800 chr3B 541040731 541041298 567 True 544 544 84.091 1803 2368 1 chr3B.!!$R2 565
20 TraesCS7B01G046800 chr2D 188181970 188182664 694 True 306 353 85.582 309 906 2 chr2D.!!$R2 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
278 279 0.037975 TTTAGGGTGTCGAGCGGTTC 60.038 55.0 0.00 0.0 0.00 3.62 F
291 292 0.239082 GCGGTTCCCCAAAACTTACG 59.761 55.0 0.00 0.0 0.00 3.18 F
721 821 0.976641 CTACTGTGGCCTCCTTCACA 59.023 55.0 3.32 0.0 41.01 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 1209 0.321387 AGTAGAGGTGAGCACGACGA 60.321 55.000 0.0 0.0 0.0 4.20 R
1124 1226 1.073897 GGCAGAGCTGGGTTGAAGT 59.926 57.895 0.0 0.0 0.0 3.01 R
2609 2785 0.178873 AGCCCCCTAGTGAGTTTGGA 60.179 55.000 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.134623 GGGAACGTGTTGCACAGA 57.865 55.556 6.58 0.00 33.40 3.41
31 32 1.941812 GGGAACGTGTTGCACAGAG 59.058 57.895 6.58 0.00 33.40 3.35
32 33 0.531974 GGGAACGTGTTGCACAGAGA 60.532 55.000 6.58 0.00 33.40 3.10
35 36 2.545113 GGAACGTGTTGCACAGAGACTA 60.545 50.000 0.00 0.00 33.40 2.59
36 37 2.135664 ACGTGTTGCACAGAGACTAC 57.864 50.000 0.00 0.00 33.40 2.73
37 38 1.681793 ACGTGTTGCACAGAGACTACT 59.318 47.619 0.00 0.00 33.40 2.57
38 39 2.100916 ACGTGTTGCACAGAGACTACTT 59.899 45.455 0.00 0.00 33.40 2.24
39 40 3.123804 CGTGTTGCACAGAGACTACTTT 58.876 45.455 0.00 0.00 33.40 2.66
40 41 3.060272 CGTGTTGCACAGAGACTACTTTG 60.060 47.826 0.00 0.00 33.40 2.77
42 43 5.047847 GTGTTGCACAGAGACTACTTTGTA 58.952 41.667 0.00 0.00 39.02 2.41
44 45 5.926542 TGTTGCACAGAGACTACTTTGTATC 59.073 40.000 0.00 0.00 39.02 2.24
45 46 5.722021 TGCACAGAGACTACTTTGTATCA 57.278 39.130 0.00 0.00 39.02 2.15
46 47 6.096673 TGCACAGAGACTACTTTGTATCAA 57.903 37.500 0.00 0.00 39.02 2.57
47 48 6.159293 TGCACAGAGACTACTTTGTATCAAG 58.841 40.000 0.00 0.00 39.02 3.02
48 49 6.159988 GCACAGAGACTACTTTGTATCAAGT 58.840 40.000 0.00 0.00 39.02 3.16
49 50 6.647067 GCACAGAGACTACTTTGTATCAAGTT 59.353 38.462 0.00 0.00 39.02 2.66
51 52 7.867909 CACAGAGACTACTTTGTATCAAGTTCA 59.132 37.037 0.00 0.00 39.02 3.18
52 53 8.589338 ACAGAGACTACTTTGTATCAAGTTCAT 58.411 33.333 0.00 0.00 39.22 2.57
53 54 9.081997 CAGAGACTACTTTGTATCAAGTTCATC 57.918 37.037 0.00 0.00 31.29 2.92
54 55 9.030452 AGAGACTACTTTGTATCAAGTTCATCT 57.970 33.333 0.00 0.00 31.29 2.90
55 56 9.296400 GAGACTACTTTGTATCAAGTTCATCTC 57.704 37.037 0.00 0.00 0.00 2.75
56 57 8.254508 AGACTACTTTGTATCAAGTTCATCTCC 58.745 37.037 0.00 0.00 0.00 3.71
57 58 8.140112 ACTACTTTGTATCAAGTTCATCTCCT 57.860 34.615 0.00 0.00 0.00 3.69
58 59 8.254508 ACTACTTTGTATCAAGTTCATCTCCTC 58.745 37.037 0.00 0.00 0.00 3.71
60 61 6.013379 ACTTTGTATCAAGTTCATCTCCTCCA 60.013 38.462 0.00 0.00 0.00 3.86
61 62 6.373005 TTGTATCAAGTTCATCTCCTCCAA 57.627 37.500 0.00 0.00 0.00 3.53
62 63 5.734720 TGTATCAAGTTCATCTCCTCCAAC 58.265 41.667 0.00 0.00 0.00 3.77
63 64 3.319137 TCAAGTTCATCTCCTCCAACG 57.681 47.619 0.00 0.00 0.00 4.10
64 65 2.897326 TCAAGTTCATCTCCTCCAACGA 59.103 45.455 0.00 0.00 0.00 3.85
65 66 3.515502 TCAAGTTCATCTCCTCCAACGAT 59.484 43.478 0.00 0.00 0.00 3.73
66 67 3.810310 AGTTCATCTCCTCCAACGATC 57.190 47.619 0.00 0.00 0.00 3.69
67 68 3.099905 AGTTCATCTCCTCCAACGATCA 58.900 45.455 0.00 0.00 0.00 2.92
68 69 3.515502 AGTTCATCTCCTCCAACGATCAA 59.484 43.478 0.00 0.00 0.00 2.57
69 70 3.526931 TCATCTCCTCCAACGATCAAC 57.473 47.619 0.00 0.00 0.00 3.18
70 71 3.099905 TCATCTCCTCCAACGATCAACT 58.900 45.455 0.00 0.00 0.00 3.16
71 72 3.515502 TCATCTCCTCCAACGATCAACTT 59.484 43.478 0.00 0.00 0.00 2.66
72 73 3.319137 TCTCCTCCAACGATCAACTTG 57.681 47.619 0.00 0.00 0.00 3.16
73 74 1.734465 CTCCTCCAACGATCAACTTGC 59.266 52.381 0.00 0.00 0.00 4.01
74 75 1.347707 TCCTCCAACGATCAACTTGCT 59.652 47.619 0.00 0.00 0.00 3.91
75 76 1.466167 CCTCCAACGATCAACTTGCTG 59.534 52.381 0.00 0.00 0.00 4.41
76 77 2.416747 CTCCAACGATCAACTTGCTGA 58.583 47.619 0.00 0.00 0.00 4.26
77 78 2.143122 TCCAACGATCAACTTGCTGAC 58.857 47.619 0.00 0.00 0.00 3.51
78 79 1.872952 CCAACGATCAACTTGCTGACA 59.127 47.619 0.00 0.00 0.00 3.58
79 80 2.485426 CCAACGATCAACTTGCTGACAT 59.515 45.455 0.00 0.00 0.00 3.06
80 81 3.425359 CCAACGATCAACTTGCTGACATC 60.425 47.826 0.00 0.00 0.00 3.06
81 82 3.325293 ACGATCAACTTGCTGACATCT 57.675 42.857 0.00 0.00 0.00 2.90
82 83 3.668447 ACGATCAACTTGCTGACATCTT 58.332 40.909 0.00 0.00 0.00 2.40
83 84 3.681897 ACGATCAACTTGCTGACATCTTC 59.318 43.478 0.00 0.00 0.00 2.87
84 85 3.681417 CGATCAACTTGCTGACATCTTCA 59.319 43.478 0.00 0.00 0.00 3.02
85 86 4.435253 CGATCAACTTGCTGACATCTTCAC 60.435 45.833 0.00 0.00 0.00 3.18
86 87 2.802247 TCAACTTGCTGACATCTTCACG 59.198 45.455 0.00 0.00 0.00 4.35
87 88 2.802247 CAACTTGCTGACATCTTCACGA 59.198 45.455 0.00 0.00 0.00 4.35
88 89 3.111853 ACTTGCTGACATCTTCACGAA 57.888 42.857 0.00 0.00 0.00 3.85
89 90 3.062763 ACTTGCTGACATCTTCACGAAG 58.937 45.455 0.08 0.08 39.71 3.79
90 91 1.432514 TGCTGACATCTTCACGAAGC 58.567 50.000 1.75 0.00 38.28 3.86
91 92 0.723981 GCTGACATCTTCACGAAGCC 59.276 55.000 1.75 0.00 38.28 4.35
92 93 1.674221 GCTGACATCTTCACGAAGCCT 60.674 52.381 1.75 0.00 38.28 4.58
93 94 2.266554 CTGACATCTTCACGAAGCCTC 58.733 52.381 1.75 0.00 38.28 4.70
94 95 1.895798 TGACATCTTCACGAAGCCTCT 59.104 47.619 1.75 0.00 38.28 3.69
95 96 2.300152 TGACATCTTCACGAAGCCTCTT 59.700 45.455 1.75 0.00 38.28 2.85
96 97 2.926838 GACATCTTCACGAAGCCTCTTC 59.073 50.000 1.75 0.00 38.28 2.87
97 98 2.275318 CATCTTCACGAAGCCTCTTCC 58.725 52.381 1.75 0.00 38.28 3.46
98 99 1.338107 TCTTCACGAAGCCTCTTCCA 58.662 50.000 1.75 0.00 38.28 3.53
99 100 1.000955 TCTTCACGAAGCCTCTTCCAC 59.999 52.381 1.75 0.00 38.28 4.02
100 101 0.756294 TTCACGAAGCCTCTTCCACA 59.244 50.000 0.00 0.00 0.00 4.17
101 102 0.756294 TCACGAAGCCTCTTCCACAA 59.244 50.000 0.00 0.00 0.00 3.33
102 103 0.868406 CACGAAGCCTCTTCCACAAC 59.132 55.000 0.00 0.00 0.00 3.32
103 104 0.250338 ACGAAGCCTCTTCCACAACC 60.250 55.000 0.00 0.00 0.00 3.77
104 105 0.250295 CGAAGCCTCTTCCACAACCA 60.250 55.000 1.45 0.00 0.00 3.67
105 106 1.239347 GAAGCCTCTTCCACAACCAC 58.761 55.000 0.00 0.00 0.00 4.16
106 107 0.550914 AAGCCTCTTCCACAACCACA 59.449 50.000 0.00 0.00 0.00 4.17
107 108 0.109342 AGCCTCTTCCACAACCACAG 59.891 55.000 0.00 0.00 0.00 3.66
108 109 0.179018 GCCTCTTCCACAACCACAGT 60.179 55.000 0.00 0.00 0.00 3.55
109 110 1.750682 GCCTCTTCCACAACCACAGTT 60.751 52.381 0.00 0.00 36.33 3.16
110 111 2.654863 CCTCTTCCACAACCACAGTTT 58.345 47.619 0.00 0.00 32.45 2.66
111 112 2.618709 CCTCTTCCACAACCACAGTTTC 59.381 50.000 0.00 0.00 32.45 2.78
112 113 3.545703 CTCTTCCACAACCACAGTTTCT 58.454 45.455 0.00 0.00 32.45 2.52
113 114 4.444306 CCTCTTCCACAACCACAGTTTCTA 60.444 45.833 0.00 0.00 32.45 2.10
114 115 4.703897 TCTTCCACAACCACAGTTTCTAG 58.296 43.478 0.00 0.00 32.45 2.43
115 116 3.485463 TCCACAACCACAGTTTCTAGG 57.515 47.619 0.00 0.00 32.45 3.02
116 117 1.880027 CCACAACCACAGTTTCTAGGC 59.120 52.381 0.00 0.00 32.45 3.93
117 118 2.487265 CCACAACCACAGTTTCTAGGCT 60.487 50.000 0.00 0.00 32.45 4.58
118 119 2.549754 CACAACCACAGTTTCTAGGCTG 59.450 50.000 0.00 7.87 38.58 4.85
119 120 2.172717 ACAACCACAGTTTCTAGGCTGT 59.827 45.455 0.00 8.88 45.69 4.40
120 121 3.389983 ACAACCACAGTTTCTAGGCTGTA 59.610 43.478 12.69 0.00 43.27 2.74
121 122 3.963428 ACCACAGTTTCTAGGCTGTAG 57.037 47.619 12.69 9.65 43.27 2.74
122 123 2.567615 ACCACAGTTTCTAGGCTGTAGG 59.432 50.000 12.69 15.83 43.27 3.18
123 124 2.622436 CACAGTTTCTAGGCTGTAGGC 58.378 52.381 12.69 0.00 43.27 3.93
124 125 1.204941 ACAGTTTCTAGGCTGTAGGCG 59.795 52.381 11.81 0.00 43.30 5.52
125 126 0.175989 AGTTTCTAGGCTGTAGGCGC 59.824 55.000 0.00 0.00 46.23 6.53
126 127 0.108329 GTTTCTAGGCTGTAGGCGCA 60.108 55.000 10.83 0.00 46.23 6.09
127 128 0.611200 TTTCTAGGCTGTAGGCGCAA 59.389 50.000 10.83 0.00 46.23 4.85
128 129 0.830648 TTCTAGGCTGTAGGCGCAAT 59.169 50.000 10.83 0.00 46.23 3.56
129 130 0.389391 TCTAGGCTGTAGGCGCAATC 59.611 55.000 10.83 0.00 46.23 2.67
130 131 0.390860 CTAGGCTGTAGGCGCAATCT 59.609 55.000 10.83 0.00 46.23 2.40
131 132 0.830648 TAGGCTGTAGGCGCAATCTT 59.169 50.000 10.83 0.00 46.23 2.40
132 133 0.830648 AGGCTGTAGGCGCAATCTTA 59.169 50.000 10.83 0.00 46.23 2.10
133 134 1.209504 AGGCTGTAGGCGCAATCTTAA 59.790 47.619 10.83 0.00 46.23 1.85
134 135 1.330829 GGCTGTAGGCGCAATCTTAAC 59.669 52.381 10.83 0.00 42.94 2.01
135 136 2.280628 GCTGTAGGCGCAATCTTAACT 58.719 47.619 10.83 0.00 0.00 2.24
136 137 2.678336 GCTGTAGGCGCAATCTTAACTT 59.322 45.455 10.83 0.00 0.00 2.66
137 138 3.869246 GCTGTAGGCGCAATCTTAACTTA 59.131 43.478 10.83 0.00 0.00 2.24
138 139 4.260253 GCTGTAGGCGCAATCTTAACTTAC 60.260 45.833 10.83 0.00 0.00 2.34
139 140 5.080969 TGTAGGCGCAATCTTAACTTACT 57.919 39.130 10.83 0.00 0.00 2.24
140 141 5.484715 TGTAGGCGCAATCTTAACTTACTT 58.515 37.500 10.83 0.00 0.00 2.24
141 142 5.935789 TGTAGGCGCAATCTTAACTTACTTT 59.064 36.000 10.83 0.00 0.00 2.66
142 143 5.296813 AGGCGCAATCTTAACTTACTTTG 57.703 39.130 10.83 0.00 0.00 2.77
143 144 4.760204 AGGCGCAATCTTAACTTACTTTGT 59.240 37.500 10.83 0.00 0.00 2.83
144 145 5.935789 AGGCGCAATCTTAACTTACTTTGTA 59.064 36.000 10.83 0.00 0.00 2.41
145 146 6.019762 GGCGCAATCTTAACTTACTTTGTAC 58.980 40.000 10.83 0.00 0.00 2.90
146 147 6.128363 GGCGCAATCTTAACTTACTTTGTACT 60.128 38.462 10.83 0.00 0.00 2.73
147 148 7.295930 GCGCAATCTTAACTTACTTTGTACTT 58.704 34.615 0.30 0.00 0.00 2.24
148 149 7.477733 GCGCAATCTTAACTTACTTTGTACTTC 59.522 37.037 0.30 0.00 0.00 3.01
149 150 8.492748 CGCAATCTTAACTTACTTTGTACTTCA 58.507 33.333 0.00 0.00 0.00 3.02
150 151 9.813080 GCAATCTTAACTTACTTTGTACTTCAG 57.187 33.333 0.00 0.00 0.00 3.02
152 153 7.958053 TCTTAACTTACTTTGTACTTCAGGC 57.042 36.000 0.00 0.00 0.00 4.85
153 154 7.732996 TCTTAACTTACTTTGTACTTCAGGCT 58.267 34.615 0.00 0.00 0.00 4.58
154 155 8.863086 TCTTAACTTACTTTGTACTTCAGGCTA 58.137 33.333 0.00 0.00 0.00 3.93
155 156 8.822652 TTAACTTACTTTGTACTTCAGGCTAC 57.177 34.615 0.00 0.00 0.00 3.58
156 157 6.415206 ACTTACTTTGTACTTCAGGCTACA 57.585 37.500 0.00 0.00 0.00 2.74
157 158 6.456501 ACTTACTTTGTACTTCAGGCTACAG 58.543 40.000 0.00 0.00 0.00 2.74
158 159 4.957684 ACTTTGTACTTCAGGCTACAGT 57.042 40.909 3.47 3.47 0.00 3.55
159 160 5.291905 ACTTTGTACTTCAGGCTACAGTT 57.708 39.130 3.29 0.00 0.00 3.16
160 161 6.415206 ACTTTGTACTTCAGGCTACAGTTA 57.585 37.500 3.29 0.00 0.00 2.24
161 162 6.823497 ACTTTGTACTTCAGGCTACAGTTAA 58.177 36.000 3.29 0.00 0.00 2.01
162 163 6.929606 ACTTTGTACTTCAGGCTACAGTTAAG 59.070 38.462 3.29 7.56 0.00 1.85
163 164 6.659745 TTGTACTTCAGGCTACAGTTAAGA 57.340 37.500 3.29 0.00 0.00 2.10
164 165 6.852420 TGTACTTCAGGCTACAGTTAAGAT 57.148 37.500 3.29 0.00 0.00 2.40
165 166 7.241042 TGTACTTCAGGCTACAGTTAAGATT 57.759 36.000 3.29 0.00 0.00 2.40
166 167 7.097192 TGTACTTCAGGCTACAGTTAAGATTG 58.903 38.462 3.29 0.00 0.00 2.67
167 168 6.360370 ACTTCAGGCTACAGTTAAGATTGA 57.640 37.500 0.00 0.00 0.00 2.57
168 169 6.402222 ACTTCAGGCTACAGTTAAGATTGAG 58.598 40.000 0.00 0.00 0.00 3.02
169 170 5.344743 TCAGGCTACAGTTAAGATTGAGG 57.655 43.478 0.00 0.00 0.00 3.86
170 171 4.162320 TCAGGCTACAGTTAAGATTGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
171 172 4.162320 CAGGCTACAGTTAAGATTGAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
172 173 4.407296 AGGCTACAGTTAAGATTGAGGGAG 59.593 45.833 0.00 0.00 0.00 4.30
173 174 4.443598 GGCTACAGTTAAGATTGAGGGAGG 60.444 50.000 0.00 0.00 0.00 4.30
174 175 4.443598 GCTACAGTTAAGATTGAGGGAGGG 60.444 50.000 0.00 0.00 0.00 4.30
175 176 3.532102 ACAGTTAAGATTGAGGGAGGGT 58.468 45.455 0.00 0.00 0.00 4.34
176 177 3.264450 ACAGTTAAGATTGAGGGAGGGTG 59.736 47.826 0.00 0.00 0.00 4.61
177 178 3.264450 CAGTTAAGATTGAGGGAGGGTGT 59.736 47.826 0.00 0.00 0.00 4.16
178 179 3.916989 AGTTAAGATTGAGGGAGGGTGTT 59.083 43.478 0.00 0.00 0.00 3.32
179 180 5.045869 CAGTTAAGATTGAGGGAGGGTGTTA 60.046 44.000 0.00 0.00 0.00 2.41
180 181 5.189934 AGTTAAGATTGAGGGAGGGTGTTAG 59.810 44.000 0.00 0.00 0.00 2.34
181 182 3.491766 AGATTGAGGGAGGGTGTTAGA 57.508 47.619 0.00 0.00 0.00 2.10
182 183 3.108376 AGATTGAGGGAGGGTGTTAGAC 58.892 50.000 0.00 0.00 0.00 2.59
183 184 2.715763 TTGAGGGAGGGTGTTAGACT 57.284 50.000 0.00 0.00 0.00 3.24
184 185 1.938585 TGAGGGAGGGTGTTAGACTG 58.061 55.000 0.00 0.00 0.00 3.51
185 186 1.149288 TGAGGGAGGGTGTTAGACTGT 59.851 52.381 0.00 0.00 0.00 3.55
186 187 2.380932 TGAGGGAGGGTGTTAGACTGTA 59.619 50.000 0.00 0.00 0.00 2.74
187 188 3.012502 TGAGGGAGGGTGTTAGACTGTAT 59.987 47.826 0.00 0.00 0.00 2.29
188 189 4.231195 TGAGGGAGGGTGTTAGACTGTATA 59.769 45.833 0.00 0.00 0.00 1.47
189 190 5.103215 TGAGGGAGGGTGTTAGACTGTATAT 60.103 44.000 0.00 0.00 0.00 0.86
190 191 6.103649 TGAGGGAGGGTGTTAGACTGTATATA 59.896 42.308 0.00 0.00 0.00 0.86
191 192 6.313324 AGGGAGGGTGTTAGACTGTATATAC 58.687 44.000 5.89 5.89 0.00 1.47
192 193 5.182760 GGGAGGGTGTTAGACTGTATATACG 59.817 48.000 8.33 5.91 0.00 3.06
193 194 5.767168 GGAGGGTGTTAGACTGTATATACGT 59.233 44.000 8.33 8.83 0.00 3.57
194 195 6.936900 GGAGGGTGTTAGACTGTATATACGTA 59.063 42.308 8.33 0.00 0.00 3.57
195 196 7.118971 GGAGGGTGTTAGACTGTATATACGTAG 59.881 44.444 8.33 3.84 0.00 3.51
197 198 7.659390 AGGGTGTTAGACTGTATATACGTAGTC 59.341 40.741 18.92 18.92 43.93 2.59
199 200 9.050601 GGTGTTAGACTGTATATACGTAGTCTT 57.949 37.037 27.75 17.71 45.48 3.01
200 201 9.861138 GTGTTAGACTGTATATACGTAGTCTTG 57.139 37.037 27.75 8.39 45.48 3.02
201 202 9.605275 TGTTAGACTGTATATACGTAGTCTTGT 57.395 33.333 27.75 14.96 45.48 3.16
205 206 9.775854 AGACTGTATATACGTAGTCTTGTACAT 57.224 33.333 21.69 6.62 45.48 2.29
206 207 9.808808 GACTGTATATACGTAGTCTTGTACATG 57.191 37.037 19.14 0.00 43.93 3.21
207 208 9.551734 ACTGTATATACGTAGTCTTGTACATGA 57.448 33.333 7.33 7.33 43.93 3.07
208 209 9.808808 CTGTATATACGTAGTCTTGTACATGAC 57.191 37.037 26.46 26.46 43.93 3.06
209 210 9.551734 TGTATATACGTAGTCTTGTACATGACT 57.448 33.333 33.87 33.87 43.93 3.41
212 213 5.449107 ACGTAGTCTTGTACATGACTTGT 57.551 39.130 35.53 30.55 41.31 3.16
213 214 6.564709 ACGTAGTCTTGTACATGACTTGTA 57.435 37.500 35.53 22.36 41.31 2.41
214 215 7.154435 ACGTAGTCTTGTACATGACTTGTAT 57.846 36.000 35.53 21.97 38.95 2.29
215 216 7.600065 ACGTAGTCTTGTACATGACTTGTATT 58.400 34.615 35.53 20.55 38.95 1.89
216 217 7.541091 ACGTAGTCTTGTACATGACTTGTATTG 59.459 37.037 35.53 24.04 38.95 1.90
217 218 7.541091 CGTAGTCTTGTACATGACTTGTATTGT 59.459 37.037 35.53 19.45 42.63 2.71
218 219 9.850628 GTAGTCTTGTACATGACTTGTATTGTA 57.149 33.333 35.53 20.13 42.63 2.41
219 220 8.758633 AGTCTTGTACATGACTTGTATTGTAC 57.241 34.615 29.30 8.90 42.63 2.90
220 221 7.817962 AGTCTTGTACATGACTTGTATTGTACC 59.182 37.037 29.30 8.27 42.63 3.34
221 222 7.817962 GTCTTGTACATGACTTGTATTGTACCT 59.182 37.037 26.47 0.00 42.63 3.08
222 223 8.033038 TCTTGTACATGACTTGTATTGTACCTC 58.967 37.037 7.33 0.00 42.63 3.85
223 224 7.476540 TGTACATGACTTGTATTGTACCTCT 57.523 36.000 0.00 0.00 42.63 3.69
224 225 7.903145 TGTACATGACTTGTATTGTACCTCTT 58.097 34.615 0.00 0.00 42.63 2.85
225 226 7.817478 TGTACATGACTTGTATTGTACCTCTTG 59.183 37.037 0.00 0.00 42.63 3.02
226 227 6.173339 ACATGACTTGTATTGTACCTCTTGG 58.827 40.000 0.00 0.00 36.57 3.61
227 228 6.239887 ACATGACTTGTATTGTACCTCTTGGT 60.240 38.462 0.00 0.00 42.90 3.67
228 229 6.921486 TGACTTGTATTGTACCTCTTGGTA 57.079 37.500 0.00 0.00 46.43 3.25
243 244 8.338072 ACCTCTTGGTACGTCTATATAATGAG 57.662 38.462 0.00 0.00 46.43 2.90
244 245 8.162085 ACCTCTTGGTACGTCTATATAATGAGA 58.838 37.037 0.00 0.00 46.43 3.27
245 246 9.179909 CCTCTTGGTACGTCTATATAATGAGAT 57.820 37.037 0.00 0.00 0.00 2.75
248 249 9.938670 CTTGGTACGTCTATATAATGAGATAGC 57.061 37.037 0.00 0.00 28.58 2.97
249 250 8.447924 TGGTACGTCTATATAATGAGATAGCC 57.552 38.462 0.00 0.00 28.58 3.93
250 251 8.050930 TGGTACGTCTATATAATGAGATAGCCA 58.949 37.037 0.00 0.00 28.58 4.75
251 252 8.344098 GGTACGTCTATATAATGAGATAGCCAC 58.656 40.741 0.00 0.00 28.58 5.01
252 253 7.939784 ACGTCTATATAATGAGATAGCCACA 57.060 36.000 0.00 0.00 28.58 4.17
253 254 7.763356 ACGTCTATATAATGAGATAGCCACAC 58.237 38.462 0.00 0.00 28.58 3.82
254 255 7.148052 ACGTCTATATAATGAGATAGCCACACC 60.148 40.741 0.00 0.00 28.58 4.16
255 256 7.493367 GTCTATATAATGAGATAGCCACACCC 58.507 42.308 0.00 0.00 28.58 4.61
256 257 5.700402 ATATAATGAGATAGCCACACCCC 57.300 43.478 0.00 0.00 0.00 4.95
257 258 0.469917 AATGAGATAGCCACACCCCG 59.530 55.000 0.00 0.00 0.00 5.73
258 259 0.691078 ATGAGATAGCCACACCCCGT 60.691 55.000 0.00 0.00 0.00 5.28
259 260 0.907704 TGAGATAGCCACACCCCGTT 60.908 55.000 0.00 0.00 0.00 4.44
260 261 0.252197 GAGATAGCCACACCCCGTTT 59.748 55.000 0.00 0.00 0.00 3.60
261 262 0.696501 AGATAGCCACACCCCGTTTT 59.303 50.000 0.00 0.00 0.00 2.43
262 263 1.910671 AGATAGCCACACCCCGTTTTA 59.089 47.619 0.00 0.00 0.00 1.52
263 264 2.093128 AGATAGCCACACCCCGTTTTAG 60.093 50.000 0.00 0.00 0.00 1.85
264 265 0.325602 TAGCCACACCCCGTTTTAGG 59.674 55.000 0.00 0.00 0.00 2.69
272 273 3.132863 CCCGTTTTAGGGTGTCGAG 57.867 57.895 0.00 0.00 46.38 4.04
273 274 1.017701 CCCGTTTTAGGGTGTCGAGC 61.018 60.000 0.00 0.00 46.38 5.03
274 275 1.349259 CCGTTTTAGGGTGTCGAGCG 61.349 60.000 0.00 0.00 0.00 5.03
275 276 1.349259 CGTTTTAGGGTGTCGAGCGG 61.349 60.000 0.00 0.00 0.00 5.52
276 277 0.320160 GTTTTAGGGTGTCGAGCGGT 60.320 55.000 0.00 0.00 0.00 5.68
277 278 0.393820 TTTTAGGGTGTCGAGCGGTT 59.606 50.000 0.00 0.00 0.00 4.44
278 279 0.037975 TTTAGGGTGTCGAGCGGTTC 60.038 55.000 0.00 0.00 0.00 3.62
279 280 1.880819 TTAGGGTGTCGAGCGGTTCC 61.881 60.000 0.00 0.00 0.00 3.62
280 281 4.754667 GGGTGTCGAGCGGTTCCC 62.755 72.222 0.00 0.00 0.00 3.97
281 282 4.754667 GGTGTCGAGCGGTTCCCC 62.755 72.222 0.00 0.00 0.00 4.81
282 283 3.998672 GTGTCGAGCGGTTCCCCA 61.999 66.667 0.00 0.00 0.00 4.96
283 284 3.235481 TGTCGAGCGGTTCCCCAA 61.235 61.111 0.00 0.00 0.00 4.12
284 285 2.031465 GTCGAGCGGTTCCCCAAA 59.969 61.111 0.00 0.00 0.00 3.28
285 286 1.598685 GTCGAGCGGTTCCCCAAAA 60.599 57.895 0.00 0.00 0.00 2.44
286 287 1.598685 TCGAGCGGTTCCCCAAAAC 60.599 57.895 0.00 0.00 0.00 2.43
287 288 1.599797 CGAGCGGTTCCCCAAAACT 60.600 57.895 0.00 0.00 0.00 2.66
288 289 1.170290 CGAGCGGTTCCCCAAAACTT 61.170 55.000 0.00 0.00 0.00 2.66
289 290 1.878948 CGAGCGGTTCCCCAAAACTTA 60.879 52.381 0.00 0.00 0.00 2.24
290 291 1.538512 GAGCGGTTCCCCAAAACTTAC 59.461 52.381 0.00 0.00 0.00 2.34
291 292 0.239082 GCGGTTCCCCAAAACTTACG 59.761 55.000 0.00 0.00 0.00 3.18
292 293 1.596603 CGGTTCCCCAAAACTTACGT 58.403 50.000 0.00 0.00 0.00 3.57
293 294 1.948834 CGGTTCCCCAAAACTTACGTT 59.051 47.619 0.00 0.00 34.03 3.99
294 295 2.358582 CGGTTCCCCAAAACTTACGTTT 59.641 45.455 0.00 0.00 44.87 3.60
321 322 4.101430 ACCCTTTGCAATCAAACTGACAAT 59.899 37.500 0.00 0.00 37.28 2.71
325 326 6.700960 CCTTTGCAATCAAACTGACAATAACA 59.299 34.615 0.00 0.00 37.28 2.41
372 373 3.900892 CCGACTATGCCGCCTCGT 61.901 66.667 0.00 0.00 0.00 4.18
414 415 3.411517 CCCCGGCAGGTCCATTCT 61.412 66.667 1.11 0.00 35.12 2.40
431 432 4.742649 TGAGTCGCCCTCGCCTCT 62.743 66.667 0.00 0.00 40.91 3.69
487 488 2.058001 ACCGGACTCATCCATCGCA 61.058 57.895 9.46 0.00 46.67 5.10
628 728 2.039624 ACTGATGCCTCCTCCGGT 59.960 61.111 0.00 0.00 0.00 5.28
635 735 2.960688 GCCTCCTCCGGTTCAGCTT 61.961 63.158 0.00 0.00 0.00 3.74
721 821 0.976641 CTACTGTGGCCTCCTTCACA 59.023 55.000 3.32 0.00 41.01 3.58
742 842 2.897969 ACTCCAGTGTTGGTTCTACGAT 59.102 45.455 0.00 0.00 45.26 3.73
751 853 3.189618 TGGTTCTACGATCGAGCTCTA 57.810 47.619 24.34 0.00 0.00 2.43
756 858 1.874231 CTACGATCGAGCTCTAAGCCA 59.126 52.381 24.34 0.00 43.77 4.75
978 1080 4.803426 CGTGAGTCGCCCCTCTGC 62.803 72.222 0.00 0.00 32.50 4.26
1007 1109 2.094675 CTCCAAAACCGCCATGAGATT 58.905 47.619 0.00 0.00 0.00 2.40
1047 1149 1.391157 GCCTTGCTGTCAAACCACCA 61.391 55.000 0.00 0.00 0.00 4.17
1077 1179 4.021925 ACCTCAAGCACCGCCCTC 62.022 66.667 0.00 0.00 0.00 4.30
1107 1209 4.988598 CCGCCACCGTTGAGCTGT 62.989 66.667 0.00 0.00 0.00 4.40
1124 1226 0.604511 TGTCGTCGTGCTCACCTCTA 60.605 55.000 0.00 0.00 0.00 2.43
1134 1236 1.623811 GCTCACCTCTACTTCAACCCA 59.376 52.381 0.00 0.00 0.00 4.51
1144 1246 2.454832 CTTCAACCCAGCTCTGCCGA 62.455 60.000 0.00 0.00 0.00 5.54
1230 1338 4.430765 CCTCGCGCCTACGTTGGT 62.431 66.667 17.40 0.00 42.83 3.67
1308 1416 0.459237 CGGTGTTGCAAGTTGCCAAA 60.459 50.000 24.59 10.81 44.23 3.28
1377 1485 5.590530 TTGTTTGTGCTACTGTTTTCCAT 57.409 34.783 0.00 0.00 0.00 3.41
1400 1508 1.774254 TGTCACACAAGGGGTCAATCT 59.226 47.619 0.00 0.00 0.00 2.40
1402 1510 3.587061 TGTCACACAAGGGGTCAATCTAT 59.413 43.478 0.00 0.00 0.00 1.98
1439 1547 3.864583 TGTTGTGCAAAGCAAATTCAGTC 59.135 39.130 0.00 0.00 41.47 3.51
1512 1622 1.650912 CAAGTTCAGTGCGCTGCTT 59.349 52.632 22.58 16.98 42.29 3.91
1856 1971 0.392863 CCATGCCCACGATTGACTCA 60.393 55.000 0.00 0.00 0.00 3.41
2480 2652 1.519719 GGCTTCCTGCTCATCGAGT 59.480 57.895 0.00 0.00 42.39 4.18
2534 2710 6.702449 ATGCTAATATATGGTCACTTGGGA 57.298 37.500 0.00 0.00 0.00 4.37
2583 2759 3.516300 TCGAACCAAAGGGAACATAGCTA 59.484 43.478 0.00 0.00 38.05 3.32
2609 2785 1.247567 CCCTTTTGATCGGCACACTT 58.752 50.000 0.00 0.00 0.00 3.16
2748 2925 4.072131 GCTTCCTGTTCAAACATAGGTCA 58.928 43.478 0.00 0.00 38.41 4.02
2778 2955 3.258372 ACCAAAGAGAACATAGCTGTCGA 59.742 43.478 0.00 0.00 33.36 4.20
2853 3034 4.336280 GAATCTTAGCTCAACCCCTTTGT 58.664 43.478 0.00 0.00 36.49 2.83
2857 3038 4.349930 TCTTAGCTCAACCCCTTTGTACTT 59.650 41.667 0.00 0.00 36.49 2.24
2932 3129 5.044558 GCGAACAATTTTGGGTTTGACTTA 58.955 37.500 0.00 0.00 31.39 2.24
3004 3201 2.420022 CCCGGCTTGACTTTTGACTATG 59.580 50.000 0.00 0.00 0.00 2.23
3096 3293 4.379174 ACAGGTCATGTGAACCGC 57.621 55.556 0.00 0.00 41.91 5.68
3180 3377 0.396435 TAAGTCGCCAGGGCATATGG 59.604 55.000 11.42 0.00 42.06 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.061322 CACGTTCCCGAACAAAGTGATA 58.939 45.455 8.23 0.00 41.20 2.15
2 3 1.292061 CACGTTCCCGAACAAAGTGA 58.708 50.000 8.23 0.00 41.20 3.41
3 4 1.011333 ACACGTTCCCGAACAAAGTG 58.989 50.000 8.23 9.60 41.20 3.16
5 6 1.858399 GCAACACGTTCCCGAACAAAG 60.858 52.381 8.23 0.06 41.20 2.77
6 7 0.099082 GCAACACGTTCCCGAACAAA 59.901 50.000 8.23 0.00 41.20 2.83
7 8 1.025113 TGCAACACGTTCCCGAACAA 61.025 50.000 8.23 0.00 41.20 2.83
8 9 1.449778 TGCAACACGTTCCCGAACA 60.450 52.632 8.23 0.00 41.20 3.18
9 10 1.010462 GTGCAACACGTTCCCGAAC 60.010 57.895 0.00 0.00 36.32 3.95
10 11 1.433053 CTGTGCAACACGTTCCCGAA 61.433 55.000 0.00 0.00 45.67 4.30
11 12 1.885388 CTGTGCAACACGTTCCCGA 60.885 57.895 0.00 0.00 45.67 5.14
15 16 1.571919 AGTCTCTGTGCAACACGTTC 58.428 50.000 0.00 0.00 45.67 3.95
16 17 2.100916 AGTAGTCTCTGTGCAACACGTT 59.899 45.455 0.00 0.00 45.67 3.99
17 18 1.681793 AGTAGTCTCTGTGCAACACGT 59.318 47.619 0.00 0.00 45.67 4.49
18 19 2.423926 AGTAGTCTCTGTGCAACACG 57.576 50.000 0.00 0.00 45.67 4.49
23 24 5.722021 TGATACAAAGTAGTCTCTGTGCA 57.278 39.130 0.00 0.00 0.00 4.57
24 25 6.159988 ACTTGATACAAAGTAGTCTCTGTGC 58.840 40.000 0.00 0.00 38.62 4.57
25 26 7.867909 TGAACTTGATACAAAGTAGTCTCTGTG 59.132 37.037 0.00 0.00 39.48 3.66
26 27 7.952671 TGAACTTGATACAAAGTAGTCTCTGT 58.047 34.615 0.00 0.00 39.48 3.41
27 28 8.994429 ATGAACTTGATACAAAGTAGTCTCTG 57.006 34.615 0.00 0.00 39.48 3.35
28 29 9.030452 AGATGAACTTGATACAAAGTAGTCTCT 57.970 33.333 0.00 0.00 39.48 3.10
30 31 8.254508 GGAGATGAACTTGATACAAAGTAGTCT 58.745 37.037 0.00 0.00 39.48 3.24
31 32 8.254508 AGGAGATGAACTTGATACAAAGTAGTC 58.745 37.037 0.00 0.00 39.48 2.59
32 33 8.140112 AGGAGATGAACTTGATACAAAGTAGT 57.860 34.615 0.00 0.00 39.48 2.73
35 36 6.013379 TGGAGGAGATGAACTTGATACAAAGT 60.013 38.462 0.00 0.00 42.21 2.66
36 37 6.409704 TGGAGGAGATGAACTTGATACAAAG 58.590 40.000 0.00 0.00 0.00 2.77
37 38 6.373005 TGGAGGAGATGAACTTGATACAAA 57.627 37.500 0.00 0.00 0.00 2.83
38 39 6.173339 GTTGGAGGAGATGAACTTGATACAA 58.827 40.000 0.00 0.00 0.00 2.41
39 40 5.624509 CGTTGGAGGAGATGAACTTGATACA 60.625 44.000 0.00 0.00 0.00 2.29
40 41 4.806247 CGTTGGAGGAGATGAACTTGATAC 59.194 45.833 0.00 0.00 0.00 2.24
42 43 3.515502 TCGTTGGAGGAGATGAACTTGAT 59.484 43.478 0.00 0.00 0.00 2.57
44 45 3.319137 TCGTTGGAGGAGATGAACTTG 57.681 47.619 0.00 0.00 0.00 3.16
45 46 3.515502 TGATCGTTGGAGGAGATGAACTT 59.484 43.478 0.00 0.00 0.00 2.66
46 47 3.099905 TGATCGTTGGAGGAGATGAACT 58.900 45.455 0.00 0.00 0.00 3.01
47 48 3.526931 TGATCGTTGGAGGAGATGAAC 57.473 47.619 0.00 0.00 0.00 3.18
48 49 3.515502 AGTTGATCGTTGGAGGAGATGAA 59.484 43.478 0.00 0.00 0.00 2.57
49 50 3.099905 AGTTGATCGTTGGAGGAGATGA 58.900 45.455 0.00 0.00 0.00 2.92
51 52 3.866651 CAAGTTGATCGTTGGAGGAGAT 58.133 45.455 0.00 0.00 0.00 2.75
52 53 2.612972 GCAAGTTGATCGTTGGAGGAGA 60.613 50.000 7.16 0.00 0.00 3.71
53 54 1.734465 GCAAGTTGATCGTTGGAGGAG 59.266 52.381 7.16 0.00 0.00 3.69
54 55 1.347707 AGCAAGTTGATCGTTGGAGGA 59.652 47.619 7.16 0.00 0.00 3.71
55 56 1.466167 CAGCAAGTTGATCGTTGGAGG 59.534 52.381 7.16 0.00 0.00 4.30
56 57 2.158449 GTCAGCAAGTTGATCGTTGGAG 59.842 50.000 7.16 0.00 0.00 3.86
57 58 2.143122 GTCAGCAAGTTGATCGTTGGA 58.857 47.619 7.16 0.00 0.00 3.53
58 59 1.872952 TGTCAGCAAGTTGATCGTTGG 59.127 47.619 7.16 0.00 0.00 3.77
60 61 3.668447 AGATGTCAGCAAGTTGATCGTT 58.332 40.909 7.16 0.00 0.00 3.85
61 62 3.325293 AGATGTCAGCAAGTTGATCGT 57.675 42.857 7.16 0.00 0.00 3.73
62 63 3.681417 TGAAGATGTCAGCAAGTTGATCG 59.319 43.478 7.16 0.00 0.00 3.69
63 64 4.435253 CGTGAAGATGTCAGCAAGTTGATC 60.435 45.833 7.16 0.06 36.74 2.92
64 65 3.434641 CGTGAAGATGTCAGCAAGTTGAT 59.565 43.478 7.16 0.00 36.74 2.57
65 66 2.802247 CGTGAAGATGTCAGCAAGTTGA 59.198 45.455 7.16 0.00 36.74 3.18
66 67 2.802247 TCGTGAAGATGTCAGCAAGTTG 59.198 45.455 0.00 0.00 36.74 3.16
67 68 3.111853 TCGTGAAGATGTCAGCAAGTT 57.888 42.857 0.00 0.00 36.74 2.66
68 69 2.820059 TCGTGAAGATGTCAGCAAGT 57.180 45.000 0.00 0.00 36.74 3.16
69 70 2.159734 GCTTCGTGAAGATGTCAGCAAG 60.160 50.000 13.60 0.00 40.79 4.01
70 71 1.800586 GCTTCGTGAAGATGTCAGCAA 59.199 47.619 13.60 0.00 40.79 3.91
71 72 1.432514 GCTTCGTGAAGATGTCAGCA 58.567 50.000 13.60 0.00 40.79 4.41
72 73 0.723981 GGCTTCGTGAAGATGTCAGC 59.276 55.000 13.60 0.00 40.79 4.26
73 74 2.094286 AGAGGCTTCGTGAAGATGTCAG 60.094 50.000 13.60 0.00 40.79 3.51
74 75 1.895798 AGAGGCTTCGTGAAGATGTCA 59.104 47.619 13.60 0.00 40.79 3.58
75 76 2.663826 AGAGGCTTCGTGAAGATGTC 57.336 50.000 13.60 6.10 40.79 3.06
76 77 2.354203 GGAAGAGGCTTCGTGAAGATGT 60.354 50.000 13.60 0.00 40.79 3.06
77 78 2.275318 GGAAGAGGCTTCGTGAAGATG 58.725 52.381 13.60 0.00 40.79 2.90
78 79 1.902508 TGGAAGAGGCTTCGTGAAGAT 59.097 47.619 13.60 0.93 40.79 2.40
79 80 1.000955 GTGGAAGAGGCTTCGTGAAGA 59.999 52.381 13.60 0.00 40.79 2.87
80 81 1.270305 TGTGGAAGAGGCTTCGTGAAG 60.270 52.381 5.24 5.24 41.24 3.02
81 82 0.756294 TGTGGAAGAGGCTTCGTGAA 59.244 50.000 0.00 0.00 0.00 3.18
82 83 0.756294 TTGTGGAAGAGGCTTCGTGA 59.244 50.000 0.00 0.00 0.00 4.35
83 84 0.868406 GTTGTGGAAGAGGCTTCGTG 59.132 55.000 0.00 0.00 0.00 4.35
84 85 0.250338 GGTTGTGGAAGAGGCTTCGT 60.250 55.000 0.00 0.00 0.00 3.85
85 86 0.250295 TGGTTGTGGAAGAGGCTTCG 60.250 55.000 0.00 0.00 0.00 3.79
86 87 1.239347 GTGGTTGTGGAAGAGGCTTC 58.761 55.000 0.00 0.00 0.00 3.86
87 88 0.550914 TGTGGTTGTGGAAGAGGCTT 59.449 50.000 0.00 0.00 0.00 4.35
88 89 0.109342 CTGTGGTTGTGGAAGAGGCT 59.891 55.000 0.00 0.00 0.00 4.58
89 90 0.179018 ACTGTGGTTGTGGAAGAGGC 60.179 55.000 0.00 0.00 0.00 4.70
90 91 2.348411 AACTGTGGTTGTGGAAGAGG 57.652 50.000 0.00 0.00 33.96 3.69
91 92 3.545703 AGAAACTGTGGTTGTGGAAGAG 58.454 45.455 0.00 0.00 35.63 2.85
92 93 3.644966 AGAAACTGTGGTTGTGGAAGA 57.355 42.857 0.00 0.00 35.63 2.87
93 94 3.815401 CCTAGAAACTGTGGTTGTGGAAG 59.185 47.826 0.00 0.00 35.63 3.46
94 95 3.815809 CCTAGAAACTGTGGTTGTGGAA 58.184 45.455 0.00 0.00 35.63 3.53
95 96 2.486548 GCCTAGAAACTGTGGTTGTGGA 60.487 50.000 0.00 0.00 35.63 4.02
96 97 1.880027 GCCTAGAAACTGTGGTTGTGG 59.120 52.381 0.00 0.00 35.63 4.17
97 98 2.549754 CAGCCTAGAAACTGTGGTTGTG 59.450 50.000 0.00 0.00 35.63 3.33
98 99 2.172717 ACAGCCTAGAAACTGTGGTTGT 59.827 45.455 10.93 0.00 45.19 3.32
99 100 2.851195 ACAGCCTAGAAACTGTGGTTG 58.149 47.619 10.93 0.00 45.19 3.77
100 101 3.008049 CCTACAGCCTAGAAACTGTGGTT 59.992 47.826 17.96 0.62 46.31 3.67
101 102 2.567615 CCTACAGCCTAGAAACTGTGGT 59.432 50.000 17.96 0.89 46.31 4.16
102 103 2.678190 GCCTACAGCCTAGAAACTGTGG 60.678 54.545 17.96 15.62 46.31 4.17
103 104 2.622436 GCCTACAGCCTAGAAACTGTG 58.378 52.381 17.96 10.67 46.31 3.66
105 106 1.927895 CGCCTACAGCCTAGAAACTG 58.072 55.000 0.00 0.00 38.78 3.16
106 107 0.175989 GCGCCTACAGCCTAGAAACT 59.824 55.000 0.00 0.00 38.78 2.66
107 108 0.108329 TGCGCCTACAGCCTAGAAAC 60.108 55.000 4.18 0.00 38.78 2.78
108 109 0.611200 TTGCGCCTACAGCCTAGAAA 59.389 50.000 4.18 0.00 38.78 2.52
109 110 0.830648 ATTGCGCCTACAGCCTAGAA 59.169 50.000 4.18 0.00 38.78 2.10
110 111 0.389391 GATTGCGCCTACAGCCTAGA 59.611 55.000 4.18 0.00 38.78 2.43
111 112 0.390860 AGATTGCGCCTACAGCCTAG 59.609 55.000 4.18 0.00 38.78 3.02
112 113 0.830648 AAGATTGCGCCTACAGCCTA 59.169 50.000 4.18 0.00 38.78 3.93
113 114 0.830648 TAAGATTGCGCCTACAGCCT 59.169 50.000 4.18 0.00 38.78 4.58
114 115 1.330829 GTTAAGATTGCGCCTACAGCC 59.669 52.381 4.18 0.00 38.78 4.85
115 116 2.280628 AGTTAAGATTGCGCCTACAGC 58.719 47.619 4.18 0.00 38.52 4.40
116 117 5.109903 AGTAAGTTAAGATTGCGCCTACAG 58.890 41.667 4.18 0.00 0.00 2.74
117 118 5.080969 AGTAAGTTAAGATTGCGCCTACA 57.919 39.130 4.18 0.00 0.00 2.74
118 119 6.128363 ACAAAGTAAGTTAAGATTGCGCCTAC 60.128 38.462 4.18 0.00 0.00 3.18
119 120 5.935789 ACAAAGTAAGTTAAGATTGCGCCTA 59.064 36.000 4.18 0.00 0.00 3.93
120 121 4.760204 ACAAAGTAAGTTAAGATTGCGCCT 59.240 37.500 4.18 0.00 0.00 5.52
121 122 5.043189 ACAAAGTAAGTTAAGATTGCGCC 57.957 39.130 4.18 0.00 0.00 6.53
122 123 6.828672 AGTACAAAGTAAGTTAAGATTGCGC 58.171 36.000 0.00 0.00 0.00 6.09
123 124 8.492748 TGAAGTACAAAGTAAGTTAAGATTGCG 58.507 33.333 0.00 0.00 0.00 4.85
124 125 9.813080 CTGAAGTACAAAGTAAGTTAAGATTGC 57.187 33.333 0.00 0.00 0.00 3.56
126 127 9.000486 GCCTGAAGTACAAAGTAAGTTAAGATT 58.000 33.333 0.00 0.00 0.00 2.40
127 128 8.376270 AGCCTGAAGTACAAAGTAAGTTAAGAT 58.624 33.333 0.00 0.00 0.00 2.40
128 129 7.732996 AGCCTGAAGTACAAAGTAAGTTAAGA 58.267 34.615 0.00 0.00 0.00 2.10
129 130 7.964604 AGCCTGAAGTACAAAGTAAGTTAAG 57.035 36.000 0.00 0.00 0.00 1.85
130 131 8.423349 TGTAGCCTGAAGTACAAAGTAAGTTAA 58.577 33.333 0.00 0.00 0.00 2.01
131 132 7.954835 TGTAGCCTGAAGTACAAAGTAAGTTA 58.045 34.615 0.00 0.00 0.00 2.24
132 133 6.823497 TGTAGCCTGAAGTACAAAGTAAGTT 58.177 36.000 0.00 0.00 0.00 2.66
133 134 6.041751 ACTGTAGCCTGAAGTACAAAGTAAGT 59.958 38.462 0.00 0.00 0.00 2.24
134 135 6.456501 ACTGTAGCCTGAAGTACAAAGTAAG 58.543 40.000 0.00 0.00 0.00 2.34
135 136 6.415206 ACTGTAGCCTGAAGTACAAAGTAA 57.585 37.500 0.00 0.00 0.00 2.24
136 137 6.415206 AACTGTAGCCTGAAGTACAAAGTA 57.585 37.500 0.00 0.00 0.00 2.24
137 138 4.957684 ACTGTAGCCTGAAGTACAAAGT 57.042 40.909 0.00 0.00 0.00 2.66
138 139 7.152645 TCTTAACTGTAGCCTGAAGTACAAAG 58.847 38.462 0.00 0.00 0.00 2.77
139 140 7.058023 TCTTAACTGTAGCCTGAAGTACAAA 57.942 36.000 0.00 0.00 0.00 2.83
140 141 6.659745 TCTTAACTGTAGCCTGAAGTACAA 57.340 37.500 0.00 0.00 0.00 2.41
141 142 6.852420 ATCTTAACTGTAGCCTGAAGTACA 57.148 37.500 0.00 0.00 0.00 2.90
142 143 7.321153 TCAATCTTAACTGTAGCCTGAAGTAC 58.679 38.462 0.00 0.00 0.00 2.73
143 144 7.363880 CCTCAATCTTAACTGTAGCCTGAAGTA 60.364 40.741 0.00 0.00 0.00 2.24
144 145 6.360370 TCAATCTTAACTGTAGCCTGAAGT 57.640 37.500 0.00 0.00 0.00 3.01
145 146 5.814705 CCTCAATCTTAACTGTAGCCTGAAG 59.185 44.000 0.00 0.00 0.00 3.02
146 147 5.338381 CCCTCAATCTTAACTGTAGCCTGAA 60.338 44.000 0.00 0.00 0.00 3.02
147 148 4.162320 CCCTCAATCTTAACTGTAGCCTGA 59.838 45.833 0.00 0.00 0.00 3.86
148 149 4.162320 TCCCTCAATCTTAACTGTAGCCTG 59.838 45.833 0.00 0.00 0.00 4.85
149 150 4.362677 TCCCTCAATCTTAACTGTAGCCT 58.637 43.478 0.00 0.00 0.00 4.58
150 151 4.443598 CCTCCCTCAATCTTAACTGTAGCC 60.444 50.000 0.00 0.00 0.00 3.93
151 152 4.443598 CCCTCCCTCAATCTTAACTGTAGC 60.444 50.000 0.00 0.00 0.00 3.58
152 153 4.717280 ACCCTCCCTCAATCTTAACTGTAG 59.283 45.833 0.00 0.00 0.00 2.74
153 154 4.469945 CACCCTCCCTCAATCTTAACTGTA 59.530 45.833 0.00 0.00 0.00 2.74
154 155 3.264450 CACCCTCCCTCAATCTTAACTGT 59.736 47.826 0.00 0.00 0.00 3.55
155 156 3.264450 ACACCCTCCCTCAATCTTAACTG 59.736 47.826 0.00 0.00 0.00 3.16
156 157 3.532102 ACACCCTCCCTCAATCTTAACT 58.468 45.455 0.00 0.00 0.00 2.24
157 158 4.302559 AACACCCTCCCTCAATCTTAAC 57.697 45.455 0.00 0.00 0.00 2.01
158 159 5.189145 GTCTAACACCCTCCCTCAATCTTAA 59.811 44.000 0.00 0.00 0.00 1.85
159 160 4.715297 GTCTAACACCCTCCCTCAATCTTA 59.285 45.833 0.00 0.00 0.00 2.10
160 161 3.519913 GTCTAACACCCTCCCTCAATCTT 59.480 47.826 0.00 0.00 0.00 2.40
161 162 3.108376 GTCTAACACCCTCCCTCAATCT 58.892 50.000 0.00 0.00 0.00 2.40
162 163 3.108376 AGTCTAACACCCTCCCTCAATC 58.892 50.000 0.00 0.00 0.00 2.67
163 164 2.840651 CAGTCTAACACCCTCCCTCAAT 59.159 50.000 0.00 0.00 0.00 2.57
164 165 2.257207 CAGTCTAACACCCTCCCTCAA 58.743 52.381 0.00 0.00 0.00 3.02
165 166 1.149288 ACAGTCTAACACCCTCCCTCA 59.851 52.381 0.00 0.00 0.00 3.86
166 167 1.939980 ACAGTCTAACACCCTCCCTC 58.060 55.000 0.00 0.00 0.00 4.30
167 168 3.778622 ATACAGTCTAACACCCTCCCT 57.221 47.619 0.00 0.00 0.00 4.20
168 169 5.182760 CGTATATACAGTCTAACACCCTCCC 59.817 48.000 13.22 0.00 0.00 4.30
169 170 5.767168 ACGTATATACAGTCTAACACCCTCC 59.233 44.000 13.22 0.00 0.00 4.30
170 171 6.874288 ACGTATATACAGTCTAACACCCTC 57.126 41.667 13.22 0.00 0.00 4.30
171 172 7.512992 ACTACGTATATACAGTCTAACACCCT 58.487 38.462 13.22 0.00 0.00 4.34
172 173 7.659390 AGACTACGTATATACAGTCTAACACCC 59.341 40.741 24.21 5.65 44.49 4.61
173 174 8.600449 AGACTACGTATATACAGTCTAACACC 57.400 38.462 24.21 6.18 44.49 4.16
174 175 9.861138 CAAGACTACGTATATACAGTCTAACAC 57.139 37.037 25.08 7.44 45.33 3.32
175 176 9.605275 ACAAGACTACGTATATACAGTCTAACA 57.395 33.333 25.08 6.67 45.33 2.41
180 181 9.808808 CATGTACAAGACTACGTATATACAGTC 57.191 37.037 18.92 18.92 38.13 3.51
181 182 9.551734 TCATGTACAAGACTACGTATATACAGT 57.448 33.333 13.22 9.28 0.00 3.55
182 183 9.808808 GTCATGTACAAGACTACGTATATACAG 57.191 37.037 21.00 6.23 0.00 2.74
183 184 9.551734 AGTCATGTACAAGACTACGTATATACA 57.448 33.333 27.53 0.00 42.92 2.29
186 187 8.900781 ACAAGTCATGTACAAGACTACGTATAT 58.099 33.333 28.52 12.51 43.88 0.86
187 188 8.272545 ACAAGTCATGTACAAGACTACGTATA 57.727 34.615 28.52 0.00 43.88 1.47
188 189 7.154435 ACAAGTCATGTACAAGACTACGTAT 57.846 36.000 28.52 13.78 43.88 3.06
189 190 6.564709 ACAAGTCATGTACAAGACTACGTA 57.435 37.500 28.52 0.00 43.88 3.57
190 191 5.449107 ACAAGTCATGTACAAGACTACGT 57.551 39.130 28.52 24.55 43.88 3.57
191 192 7.541091 ACAATACAAGTCATGTACAAGACTACG 59.459 37.037 28.52 24.02 46.90 3.51
192 193 8.758633 ACAATACAAGTCATGTACAAGACTAC 57.241 34.615 28.52 7.17 46.90 2.73
193 194 9.850628 GTACAATACAAGTCATGTACAAGACTA 57.149 33.333 28.52 16.85 46.90 2.59
194 195 7.817962 GGTACAATACAAGTCATGTACAAGACT 59.182 37.037 24.30 24.30 46.90 3.24
195 196 7.817962 AGGTACAATACAAGTCATGTACAAGAC 59.182 37.037 20.79 20.79 46.90 3.01
196 197 7.903145 AGGTACAATACAAGTCATGTACAAGA 58.097 34.615 20.46 0.00 46.90 3.02
197 198 8.035394 AGAGGTACAATACAAGTCATGTACAAG 58.965 37.037 20.46 0.00 46.90 3.16
198 199 7.903145 AGAGGTACAATACAAGTCATGTACAA 58.097 34.615 20.46 0.00 46.90 2.41
199 200 7.476540 AGAGGTACAATACAAGTCATGTACA 57.523 36.000 20.46 0.00 46.90 2.90
200 201 7.277981 CCAAGAGGTACAATACAAGTCATGTAC 59.722 40.741 14.89 14.89 46.90 2.90
202 203 6.173339 CCAAGAGGTACAATACAAGTCATGT 58.827 40.000 0.00 0.00 46.36 3.21
203 204 6.668541 CCAAGAGGTACAATACAAGTCATG 57.331 41.667 0.00 0.00 0.00 3.07
219 220 8.563123 TCTCATTATATAGACGTACCAAGAGG 57.437 38.462 0.00 0.00 42.21 3.69
222 223 9.938670 GCTATCTCATTATATAGACGTACCAAG 57.061 37.037 0.00 0.00 0.00 3.61
223 224 8.900781 GGCTATCTCATTATATAGACGTACCAA 58.099 37.037 0.00 0.00 0.00 3.67
224 225 8.050930 TGGCTATCTCATTATATAGACGTACCA 58.949 37.037 0.00 0.00 36.63 3.25
225 226 8.344098 GTGGCTATCTCATTATATAGACGTACC 58.656 40.741 0.00 0.00 36.63 3.34
226 227 8.890718 TGTGGCTATCTCATTATATAGACGTAC 58.109 37.037 0.00 0.00 36.63 3.67
227 228 8.890718 GTGTGGCTATCTCATTATATAGACGTA 58.109 37.037 0.00 0.00 36.63 3.57
228 229 7.148052 GGTGTGGCTATCTCATTATATAGACGT 60.148 40.741 0.00 0.00 36.63 4.34
229 230 7.197017 GGTGTGGCTATCTCATTATATAGACG 58.803 42.308 0.00 0.00 36.63 4.18
230 231 7.418025 GGGGTGTGGCTATCTCATTATATAGAC 60.418 44.444 0.00 0.00 34.76 2.59
231 232 6.611642 GGGGTGTGGCTATCTCATTATATAGA 59.388 42.308 0.00 0.00 0.00 1.98
232 233 6.461648 CGGGGTGTGGCTATCTCATTATATAG 60.462 46.154 0.00 0.00 0.00 1.31
233 234 5.362717 CGGGGTGTGGCTATCTCATTATATA 59.637 44.000 0.00 0.00 0.00 0.86
234 235 4.162320 CGGGGTGTGGCTATCTCATTATAT 59.838 45.833 0.00 0.00 0.00 0.86
235 236 3.513912 CGGGGTGTGGCTATCTCATTATA 59.486 47.826 0.00 0.00 0.00 0.98
236 237 2.303022 CGGGGTGTGGCTATCTCATTAT 59.697 50.000 0.00 0.00 0.00 1.28
237 238 1.691976 CGGGGTGTGGCTATCTCATTA 59.308 52.381 0.00 0.00 0.00 1.90
238 239 0.469917 CGGGGTGTGGCTATCTCATT 59.530 55.000 0.00 0.00 0.00 2.57
239 240 0.691078 ACGGGGTGTGGCTATCTCAT 60.691 55.000 0.00 0.00 0.00 2.90
240 241 0.907704 AACGGGGTGTGGCTATCTCA 60.908 55.000 0.00 0.00 0.00 3.27
241 242 0.252197 AAACGGGGTGTGGCTATCTC 59.748 55.000 0.00 0.00 0.00 2.75
242 243 0.696501 AAAACGGGGTGTGGCTATCT 59.303 50.000 0.00 0.00 0.00 1.98
243 244 2.285977 CTAAAACGGGGTGTGGCTATC 58.714 52.381 0.00 0.00 0.00 2.08
244 245 1.064979 CCTAAAACGGGGTGTGGCTAT 60.065 52.381 0.00 0.00 0.00 2.97
245 246 0.325602 CCTAAAACGGGGTGTGGCTA 59.674 55.000 0.00 0.00 0.00 3.93
246 247 1.074248 CCTAAAACGGGGTGTGGCT 59.926 57.895 0.00 0.00 0.00 4.75
247 248 1.974875 CCCTAAAACGGGGTGTGGC 60.975 63.158 0.00 0.00 40.75 5.01
248 249 4.408378 CCCTAAAACGGGGTGTGG 57.592 61.111 0.00 0.00 40.75 4.17
255 256 1.349259 CGCTCGACACCCTAAAACGG 61.349 60.000 0.00 0.00 0.00 4.44
256 257 1.349259 CCGCTCGACACCCTAAAACG 61.349 60.000 0.00 0.00 0.00 3.60
257 258 0.320160 ACCGCTCGACACCCTAAAAC 60.320 55.000 0.00 0.00 0.00 2.43
258 259 0.393820 AACCGCTCGACACCCTAAAA 59.606 50.000 0.00 0.00 0.00 1.52
259 260 0.037975 GAACCGCTCGACACCCTAAA 60.038 55.000 0.00 0.00 0.00 1.85
260 261 1.588082 GAACCGCTCGACACCCTAA 59.412 57.895 0.00 0.00 0.00 2.69
261 262 2.345760 GGAACCGCTCGACACCCTA 61.346 63.158 0.00 0.00 0.00 3.53
262 263 3.692406 GGAACCGCTCGACACCCT 61.692 66.667 0.00 0.00 0.00 4.34
263 264 4.754667 GGGAACCGCTCGACACCC 62.755 72.222 0.00 0.00 40.86 4.61
285 286 5.068067 ATTGCAAAGGGTGTAAAACGTAAGT 59.932 36.000 1.71 0.00 43.18 2.24
286 287 5.525199 ATTGCAAAGGGTGTAAAACGTAAG 58.475 37.500 1.71 0.00 38.32 2.34
287 288 4.978083 TTGCAAAGGGTGTAAAACGTAA 57.022 36.364 0.00 0.00 0.00 3.18
288 289 4.579340 TGATTGCAAAGGGTGTAAAACGTA 59.421 37.500 1.71 0.00 35.30 3.57
289 290 3.381908 TGATTGCAAAGGGTGTAAAACGT 59.618 39.130 1.71 0.00 35.30 3.99
290 291 3.971150 TGATTGCAAAGGGTGTAAAACG 58.029 40.909 1.71 0.00 35.30 3.60
291 292 5.815222 AGTTTGATTGCAAAGGGTGTAAAAC 59.185 36.000 1.71 1.67 44.12 2.43
292 293 5.814705 CAGTTTGATTGCAAAGGGTGTAAAA 59.185 36.000 1.71 0.00 44.12 1.52
293 294 5.127845 TCAGTTTGATTGCAAAGGGTGTAAA 59.872 36.000 1.71 0.00 44.12 2.01
294 295 4.646945 TCAGTTTGATTGCAAAGGGTGTAA 59.353 37.500 1.71 0.00 44.12 2.41
295 296 4.037446 GTCAGTTTGATTGCAAAGGGTGTA 59.963 41.667 1.71 0.00 44.12 2.90
296 297 3.030291 TCAGTTTGATTGCAAAGGGTGT 58.970 40.909 1.71 0.00 44.12 4.16
297 298 3.181477 TGTCAGTTTGATTGCAAAGGGTG 60.181 43.478 1.71 0.00 44.12 4.61
321 322 2.281539 TCCCGTGTCTGTCTCTGTTA 57.718 50.000 0.00 0.00 0.00 2.41
325 326 1.524863 CCGTTCCCGTGTCTGTCTCT 61.525 60.000 0.00 0.00 0.00 3.10
356 357 2.353607 GACGAGGCGGCATAGTCG 60.354 66.667 13.08 14.39 33.63 4.18
483 484 2.852495 GAAATCTGGGCCGACTGCGA 62.852 60.000 0.00 0.00 42.61 5.10
487 488 2.125106 GCGAAATCTGGGCCGACT 60.125 61.111 0.00 0.00 0.00 4.18
582 682 2.510691 CGGATACAAAGGCGCCGT 60.511 61.111 23.20 16.90 37.35 5.68
628 728 2.250939 CGGTCAACGCCAAGCTGAA 61.251 57.895 0.00 0.00 34.82 3.02
721 821 2.313317 TCGTAGAACCAACACTGGAGT 58.687 47.619 0.00 0.00 46.92 3.85
731 831 2.039818 AGAGCTCGATCGTAGAACCA 57.960 50.000 15.94 0.00 43.58 3.67
742 842 1.360551 GCGATGGCTTAGAGCTCGA 59.639 57.895 8.37 0.00 40.10 4.04
761 863 4.724602 GCTCAGCGAGGCACGACA 62.725 66.667 8.92 0.00 45.77 4.35
803 905 3.303135 AGGCGACTCAAGGCACGA 61.303 61.111 0.00 0.00 32.90 4.35
950 1052 2.995574 ACTCACGGGTAGCGGCTT 60.996 61.111 8.26 0.00 0.00 4.35
1107 1209 0.321387 AGTAGAGGTGAGCACGACGA 60.321 55.000 0.00 0.00 0.00 4.20
1124 1226 1.073897 GGCAGAGCTGGGTTGAAGT 59.926 57.895 0.00 0.00 0.00 3.01
1223 1331 2.518349 CAGGGGCAACACCAACGT 60.518 61.111 0.00 0.00 46.76 3.99
1308 1416 3.609256 TGTAGCCTCAGGATCTGATCT 57.391 47.619 16.61 1.27 39.92 2.75
1377 1485 2.516227 TGACCCCTTGTGTGACAAAA 57.484 45.000 0.00 0.00 37.69 2.44
1400 1508 3.000041 CAACAGCGAGCAGTACCAAATA 59.000 45.455 0.00 0.00 0.00 1.40
1402 1510 1.225855 CAACAGCGAGCAGTACCAAA 58.774 50.000 0.00 0.00 0.00 3.28
2451 2618 1.464198 AGGAAGCCCCCAAGTGACT 60.464 57.895 0.00 0.00 34.66 3.41
2534 2710 4.327680 GACCTATGTTTGAACAGGAAGCT 58.672 43.478 8.60 0.00 43.04 3.74
2572 2748 4.338379 AGGGTTTCGATAGCTATGTTCC 57.662 45.455 11.94 6.27 0.00 3.62
2583 2759 1.743394 GCCGATCAAAAGGGTTTCGAT 59.257 47.619 0.00 0.00 0.00 3.59
2609 2785 0.178873 AGCCCCCTAGTGAGTTTGGA 60.179 55.000 0.00 0.00 0.00 3.53
2652 2828 3.073356 TGTCGGACCCAAAAGAGGTTAAT 59.927 43.478 5.55 0.00 37.88 1.40
2748 2925 7.225538 CAGCTATGTTCTCTTTGGTTCGAATAT 59.774 37.037 0.00 0.00 0.00 1.28
2778 2955 2.811873 GCATTGCCGATCAAGAGGGTAT 60.812 50.000 0.00 0.00 38.22 2.73
2857 3038 7.477494 TCTGATTCGTATACGATCAGAAAACA 58.523 34.615 36.02 25.75 46.60 2.83
3004 3201 3.932710 TGATTGTCATAAACTGGCGACTC 59.067 43.478 0.00 0.00 29.52 3.36
3096 3293 7.121168 ACCACTGTGATATTGAATTTGTACTGG 59.879 37.037 9.86 0.00 0.00 4.00
3130 3327 3.074538 GCCAGGGTGGGTCATAATATCTT 59.925 47.826 0.00 0.00 38.19 2.40
3180 3377 7.165427 CAAATCCTGCAAAGAGTTTAAACAC 57.835 36.000 20.06 13.88 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.