Multiple sequence alignment - TraesCS7B01G046200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G046200 chr7B 100.000 6673 0 0 1 6673 45050203 45043531 0.000000e+00 12323
1 TraesCS7B01G046200 chr7B 79.679 3740 723 35 2501 6221 60055002 60058723 0.000000e+00 2662
2 TraesCS7B01G046200 chr7B 100.000 482 0 0 7045 7526 45043159 45042678 0.000000e+00 891
3 TraesCS7B01G046200 chr2B 97.456 5504 126 9 1175 6673 159218727 159213233 0.000000e+00 9376
4 TraesCS7B01G046200 chr2B 82.517 4862 800 43 1652 6486 441902300 441897462 0.000000e+00 4224
5 TraesCS7B01G046200 chr2B 80.585 1607 296 15 14 1612 441903906 441902308 0.000000e+00 1225
6 TraesCS7B01G046200 chr2B 96.341 656 23 1 525 1179 159245257 159244602 0.000000e+00 1077
7 TraesCS7B01G046200 chr2B 95.274 529 23 2 1 529 159250086 159249560 0.000000e+00 837
8 TraesCS7B01G046200 chr7D 89.898 6682 627 27 2 6666 203031665 203025015 0.000000e+00 8556
9 TraesCS7B01G046200 chr4D 90.524 4844 415 19 1841 6666 360454221 360459038 0.000000e+00 6362
10 TraesCS7B01G046200 chr5D 90.442 4771 433 13 2 4766 484152914 484148161 0.000000e+00 6263
11 TraesCS7B01G046200 chr5D 90.735 1878 161 12 4797 6666 484147928 484146056 0.000000e+00 2492
12 TraesCS7B01G046200 chr5D 78.117 2751 532 59 299 3016 301045869 301048582 0.000000e+00 1681
13 TraesCS7B01G046200 chr5A 83.431 6168 954 53 359 6498 592027306 592021179 0.000000e+00 5666
14 TraesCS7B01G046200 chr5A 78.104 4736 961 66 1806 6502 583449801 583454499 0.000000e+00 2931
15 TraesCS7B01G046200 chr5B 86.394 5211 670 30 2 5193 278729541 278734731 0.000000e+00 5659
16 TraesCS7B01G046200 chr4B 94.753 3640 180 6 1154 4790 534693466 534697097 0.000000e+00 5653
17 TraesCS7B01G046200 chr4B 93.182 1892 116 10 4785 6668 534709527 534711413 0.000000e+00 2767
18 TraesCS7B01G046200 chr4B 93.139 481 29 4 681 1160 534684206 534684683 0.000000e+00 702
19 TraesCS7B01G046200 chr4B 92.537 268 20 0 1 268 534683937 534684204 1.180000e-102 385
20 TraesCS7B01G046200 chr2A 91.174 4147 331 25 2534 6666 596369614 596373739 0.000000e+00 5598
21 TraesCS7B01G046200 chr2A 91.542 2530 192 14 4147 6666 672641803 672639286 0.000000e+00 3467
22 TraesCS7B01G046200 chr3D 73.016 693 168 16 928 1610 505980128 505979445 7.600000e-55 226


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G046200 chr7B 45042678 45050203 7525 True 6607.0 12323 100.0000 1 7526 2 chr7B.!!$R1 7525
1 TraesCS7B01G046200 chr7B 60055002 60058723 3721 False 2662.0 2662 79.6790 2501 6221 1 chr7B.!!$F1 3720
2 TraesCS7B01G046200 chr2B 159213233 159218727 5494 True 9376.0 9376 97.4560 1175 6673 1 chr2B.!!$R1 5498
3 TraesCS7B01G046200 chr2B 441897462 441903906 6444 True 2724.5 4224 81.5510 14 6486 2 chr2B.!!$R4 6472
4 TraesCS7B01G046200 chr2B 159244602 159245257 655 True 1077.0 1077 96.3410 525 1179 1 chr2B.!!$R2 654
5 TraesCS7B01G046200 chr2B 159249560 159250086 526 True 837.0 837 95.2740 1 529 1 chr2B.!!$R3 528
6 TraesCS7B01G046200 chr7D 203025015 203031665 6650 True 8556.0 8556 89.8980 2 6666 1 chr7D.!!$R1 6664
7 TraesCS7B01G046200 chr4D 360454221 360459038 4817 False 6362.0 6362 90.5240 1841 6666 1 chr4D.!!$F1 4825
8 TraesCS7B01G046200 chr5D 484146056 484152914 6858 True 4377.5 6263 90.5885 2 6666 2 chr5D.!!$R1 6664
9 TraesCS7B01G046200 chr5D 301045869 301048582 2713 False 1681.0 1681 78.1170 299 3016 1 chr5D.!!$F1 2717
10 TraesCS7B01G046200 chr5A 592021179 592027306 6127 True 5666.0 5666 83.4310 359 6498 1 chr5A.!!$R1 6139
11 TraesCS7B01G046200 chr5A 583449801 583454499 4698 False 2931.0 2931 78.1040 1806 6502 1 chr5A.!!$F1 4696
12 TraesCS7B01G046200 chr5B 278729541 278734731 5190 False 5659.0 5659 86.3940 2 5193 1 chr5B.!!$F1 5191
13 TraesCS7B01G046200 chr4B 534693466 534697097 3631 False 5653.0 5653 94.7530 1154 4790 1 chr4B.!!$F1 3636
14 TraesCS7B01G046200 chr4B 534709527 534711413 1886 False 2767.0 2767 93.1820 4785 6668 1 chr4B.!!$F2 1883
15 TraesCS7B01G046200 chr4B 534683937 534684683 746 False 543.5 702 92.8380 1 1160 2 chr4B.!!$F3 1159
16 TraesCS7B01G046200 chr2A 596369614 596373739 4125 False 5598.0 5598 91.1740 2534 6666 1 chr2A.!!$F1 4132
17 TraesCS7B01G046200 chr2A 672639286 672641803 2517 True 3467.0 3467 91.5420 4147 6666 1 chr2A.!!$R1 2519
18 TraesCS7B01G046200 chr3D 505979445 505980128 683 True 226.0 226 73.0160 928 1610 1 chr3D.!!$R1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.826715 TGAGGAAGAAGGAGATGCCG 59.173 55.000 0.0 0.0 43.43 5.69 F
750 769 1.535204 AATTCCAAGGGCAAGCACCG 61.535 55.000 0.0 0.0 0.00 4.94 F
2093 2125 3.084039 GCTCCAGAATTGACATTGGTGA 58.916 45.455 0.0 0.0 32.51 4.02 F
3084 3127 4.551702 AATTTAATGCCTGGGTGGAAAC 57.448 40.909 0.0 0.0 38.35 2.78 F
3946 3998 2.166459 TGGTTCATACTCTGAAGGAGCG 59.834 50.000 0.0 0.0 44.44 5.03 F
4968 5228 2.882137 GCTACTGTCCTACTCTGCTAGG 59.118 54.545 0.0 0.0 35.43 3.02 F
6024 6287 1.416030 TGCTTGTGTCTTGTGGAGCTA 59.584 47.619 0.0 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 2010 3.555966 CTGGACTGAAAACCACTTCCTT 58.444 45.455 0.00 0.00 32.44 3.36 R
2469 2510 1.068741 GAGCTCCTGTATAACCCCACG 59.931 57.143 0.87 0.00 0.00 4.94 R
3946 3998 1.422161 ATAGGCCATCTGGTCCAGGC 61.422 60.000 19.11 15.02 41.83 4.85 R
4176 4230 7.004691 TCATGAGAGTAGCAAGCCTATTAGTA 58.995 38.462 0.00 0.00 0.00 1.82 R
5467 5728 3.351740 ACTGTCACACATTGTTGGTGAA 58.648 40.909 10.53 3.25 42.59 3.18 R
6388 6651 0.465460 GGTTGAGTTGGTGTGCCAGA 60.465 55.000 0.00 0.00 46.91 3.86 R
7417 7702 0.038892 TCGTTAGACAACACTCGGCC 60.039 55.000 0.00 0.00 34.05 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
188 189 0.826715 TGAGGAAGAAGGAGATGCCG 59.173 55.000 0.00 0.00 43.43 5.69
321 325 2.122729 AGACTGCCACCCTGCCTA 59.877 61.111 0.00 0.00 0.00 3.93
530 541 3.394836 GAGGGAGCGGGCAGAACT 61.395 66.667 0.00 0.00 0.00 3.01
750 769 1.535204 AATTCCAAGGGCAAGCACCG 61.535 55.000 0.00 0.00 0.00 4.94
822 841 6.999272 AGTCAGTAGTAGAGAACAACAGAGAA 59.001 38.462 0.00 0.00 0.00 2.87
1025 1044 5.303333 TGGTGACACACAAAGTAGATGACTA 59.697 40.000 8.08 0.00 34.81 2.59
1149 1168 8.542132 CAACATGTAGGAAACAAGAAAAATGTG 58.458 33.333 0.00 0.00 42.70 3.21
1550 1569 8.421249 TTTGAGGTGGTTAGAATCAAAATCAT 57.579 30.769 0.00 0.00 37.04 2.45
1598 1618 9.046846 TCCTACTGAAAGAATCTTTGGAATAGA 57.953 33.333 13.55 1.03 37.43 1.98
1786 1806 3.969976 CTCATCTCAGTCTGGGGGAAATA 59.030 47.826 0.00 0.00 0.00 1.40
1896 1916 4.021368 AGCTTCAAAATGCTGCAAGAGATT 60.021 37.500 6.36 0.00 38.21 2.40
1978 2010 3.711704 GGTAGTGGAGAATGAATCCCTGA 59.288 47.826 0.00 0.00 35.86 3.86
2093 2125 3.084039 GCTCCAGAATTGACATTGGTGA 58.916 45.455 0.00 0.00 32.51 4.02
2469 2510 5.187186 TGACTTAGATTCTCCTGTTACACCC 59.813 44.000 0.00 0.00 0.00 4.61
3084 3127 4.551702 AATTTAATGCCTGGGTGGAAAC 57.448 40.909 0.00 0.00 38.35 2.78
3113 3156 7.200434 AGCCTTCTAGAAATTAGGATGTCAA 57.800 36.000 11.71 0.00 0.00 3.18
3126 3169 8.970859 ATTAGGATGTCAAGTAGGAAATTCAG 57.029 34.615 0.00 0.00 0.00 3.02
3666 3714 5.782925 ACTAGAAGGAGACAGGAATACCAT 58.217 41.667 0.00 0.00 38.94 3.55
3675 3723 6.183361 GGAGACAGGAATACCATGTACTTCAT 60.183 42.308 0.00 0.00 38.94 2.57
3761 3809 5.943416 CCTACCTCAGACACTAGAGATATGG 59.057 48.000 0.00 0.00 33.74 2.74
3885 3937 7.518188 TCTGAAGATAATAATGAAACCCTCCC 58.482 38.462 0.00 0.00 0.00 4.30
3908 3960 5.693555 CCAGCTCCATTTTCTGAAAAAGAAC 59.306 40.000 18.43 13.31 44.77 3.01
3919 3971 5.132502 TCTGAAAAAGAACTGAAGGATGCA 58.867 37.500 0.00 0.00 29.54 3.96
3946 3998 2.166459 TGGTTCATACTCTGAAGGAGCG 59.834 50.000 0.00 0.00 44.44 5.03
4441 4497 8.780616 ATGGATTTATCAAATTACCCACATGA 57.219 30.769 0.00 0.00 0.00 3.07
4968 5228 2.882137 GCTACTGTCCTACTCTGCTAGG 59.118 54.545 0.00 0.00 35.43 3.02
5467 5728 5.130311 AGTTTTGGCCTTTGTACTCCATTTT 59.870 36.000 3.32 0.00 0.00 1.82
5606 5867 3.567478 AAGGAGACTGTGCTCAAAACT 57.433 42.857 0.00 0.00 42.68 2.66
6024 6287 1.416030 TGCTTGTGTCTTGTGGAGCTA 59.584 47.619 0.00 0.00 0.00 3.32
6084 6347 5.991606 CAGTCTGGTCTGATGTTAAACAGAA 59.008 40.000 0.00 0.00 43.29 3.02
6388 6651 0.900182 TGCATCACCTCTCGACTGGT 60.900 55.000 0.00 0.00 36.96 4.00
6570 6840 3.170717 AGTCAAGAACGTTGGATCCCTA 58.829 45.455 5.00 0.00 0.00 3.53
6657 6941 1.544724 GTTTGAGGCATGCTTGGGTA 58.455 50.000 18.92 0.00 0.00 3.69
7067 7352 6.633500 AAATTTCTCTCGTCCATGTCAAAA 57.367 33.333 0.00 0.00 0.00 2.44
7068 7353 5.869753 ATTTCTCTCGTCCATGTCAAAAG 57.130 39.130 0.00 0.00 0.00 2.27
7069 7354 3.319137 TCTCTCGTCCATGTCAAAAGG 57.681 47.619 0.00 0.00 0.00 3.11
7070 7355 2.897326 TCTCTCGTCCATGTCAAAAGGA 59.103 45.455 0.00 0.00 0.00 3.36
7071 7356 3.323691 TCTCTCGTCCATGTCAAAAGGAA 59.676 43.478 0.00 0.00 32.30 3.36
7072 7357 4.065088 CTCTCGTCCATGTCAAAAGGAAA 58.935 43.478 0.00 0.00 32.30 3.13
7073 7358 4.456535 TCTCGTCCATGTCAAAAGGAAAA 58.543 39.130 0.00 0.00 32.30 2.29
7074 7359 4.884744 TCTCGTCCATGTCAAAAGGAAAAA 59.115 37.500 0.00 0.00 32.30 1.94
7095 7380 6.532365 AAAAATTCTCTCGTTGACACTCTC 57.468 37.500 0.00 0.00 0.00 3.20
7096 7381 5.461032 AAATTCTCTCGTTGACACTCTCT 57.539 39.130 0.00 0.00 0.00 3.10
7097 7382 5.461032 AATTCTCTCGTTGACACTCTCTT 57.539 39.130 0.00 0.00 0.00 2.85
7098 7383 4.491234 TTCTCTCGTTGACACTCTCTTC 57.509 45.455 0.00 0.00 0.00 2.87
7099 7384 3.745799 TCTCTCGTTGACACTCTCTTCT 58.254 45.455 0.00 0.00 0.00 2.85
7100 7385 3.749088 TCTCTCGTTGACACTCTCTTCTC 59.251 47.826 0.00 0.00 0.00 2.87
7101 7386 3.745799 TCTCGTTGACACTCTCTTCTCT 58.254 45.455 0.00 0.00 0.00 3.10
7102 7387 3.500299 TCTCGTTGACACTCTCTTCTCTG 59.500 47.826 0.00 0.00 0.00 3.35
7103 7388 2.030717 TCGTTGACACTCTCTTCTCTGC 60.031 50.000 0.00 0.00 0.00 4.26
7104 7389 2.287849 CGTTGACACTCTCTTCTCTGCA 60.288 50.000 0.00 0.00 0.00 4.41
7105 7390 3.722147 GTTGACACTCTCTTCTCTGCAA 58.278 45.455 0.00 0.00 0.00 4.08
7106 7391 4.314121 GTTGACACTCTCTTCTCTGCAAT 58.686 43.478 0.00 0.00 0.00 3.56
7107 7392 5.473931 GTTGACACTCTCTTCTCTGCAATA 58.526 41.667 0.00 0.00 0.00 1.90
7108 7393 5.065704 TGACACTCTCTTCTCTGCAATAC 57.934 43.478 0.00 0.00 0.00 1.89
7109 7394 4.524328 TGACACTCTCTTCTCTGCAATACA 59.476 41.667 0.00 0.00 0.00 2.29
7110 7395 5.011023 TGACACTCTCTTCTCTGCAATACAA 59.989 40.000 0.00 0.00 0.00 2.41
7111 7396 5.858381 ACACTCTCTTCTCTGCAATACAAA 58.142 37.500 0.00 0.00 0.00 2.83
7112 7397 6.471146 ACACTCTCTTCTCTGCAATACAAAT 58.529 36.000 0.00 0.00 0.00 2.32
7113 7398 6.939163 ACACTCTCTTCTCTGCAATACAAATT 59.061 34.615 0.00 0.00 0.00 1.82
7114 7399 7.094890 ACACTCTCTTCTCTGCAATACAAATTG 60.095 37.037 0.00 0.00 44.53 2.32
7124 7409 3.929094 CAATACAAATTGCCCTTGCTGT 58.071 40.909 0.00 0.00 36.35 4.40
7125 7410 4.317488 CAATACAAATTGCCCTTGCTGTT 58.683 39.130 0.00 0.00 36.35 3.16
7126 7411 2.531522 ACAAATTGCCCTTGCTGTTC 57.468 45.000 0.00 0.00 38.71 3.18
7127 7412 1.269726 ACAAATTGCCCTTGCTGTTCG 60.270 47.619 0.00 0.00 38.71 3.95
7128 7413 1.039856 AAATTGCCCTTGCTGTTCGT 58.960 45.000 0.00 0.00 38.71 3.85
7129 7414 1.904287 AATTGCCCTTGCTGTTCGTA 58.096 45.000 0.00 0.00 38.71 3.43
7130 7415 1.165270 ATTGCCCTTGCTGTTCGTAC 58.835 50.000 0.00 0.00 38.71 3.67
7131 7416 0.107831 TTGCCCTTGCTGTTCGTACT 59.892 50.000 0.00 0.00 38.71 2.73
7132 7417 0.320421 TGCCCTTGCTGTTCGTACTC 60.320 55.000 0.00 0.00 38.71 2.59
7133 7418 1.352156 GCCCTTGCTGTTCGTACTCG 61.352 60.000 0.00 0.00 34.68 4.18
7134 7419 1.352156 CCCTTGCTGTTCGTACTCGC 61.352 60.000 0.00 0.00 36.96 5.03
7135 7420 1.352156 CCTTGCTGTTCGTACTCGCC 61.352 60.000 0.00 0.00 36.96 5.54
7136 7421 1.674611 CTTGCTGTTCGTACTCGCCG 61.675 60.000 0.00 0.00 36.96 6.46
7137 7422 2.132517 TTGCTGTTCGTACTCGCCGA 62.133 55.000 0.00 0.00 36.96 5.54
7138 7423 1.443194 GCTGTTCGTACTCGCCGAA 60.443 57.895 0.00 0.00 41.60 4.30
7139 7424 1.005294 GCTGTTCGTACTCGCCGAAA 61.005 55.000 0.00 0.00 44.90 3.46
7140 7425 0.706729 CTGTTCGTACTCGCCGAAAC 59.293 55.000 0.00 0.00 44.90 2.78
7141 7426 0.998226 TGTTCGTACTCGCCGAAACG 60.998 55.000 13.59 13.59 44.90 3.60
7151 7436 4.404654 CCGAAACGGCTTGCCTGC 62.405 66.667 10.12 0.00 41.17 4.85
7152 7437 3.357079 CGAAACGGCTTGCCTGCT 61.357 61.111 10.12 0.00 0.00 4.24
7153 7438 2.563427 GAAACGGCTTGCCTGCTC 59.437 61.111 10.12 0.00 0.00 4.26
7154 7439 2.982744 GAAACGGCTTGCCTGCTCC 61.983 63.158 10.12 0.00 0.00 4.70
7155 7440 3.497884 AAACGGCTTGCCTGCTCCT 62.498 57.895 10.12 0.00 0.00 3.69
7156 7441 2.983725 AAACGGCTTGCCTGCTCCTT 62.984 55.000 10.12 0.00 0.00 3.36
7157 7442 3.130160 CGGCTTGCCTGCTCCTTC 61.130 66.667 10.12 0.00 0.00 3.46
7158 7443 2.753446 GGCTTGCCTGCTCCTTCC 60.753 66.667 4.11 0.00 0.00 3.46
7159 7444 2.034687 GCTTGCCTGCTCCTTCCA 59.965 61.111 0.00 0.00 0.00 3.53
7160 7445 2.338785 GCTTGCCTGCTCCTTCCAC 61.339 63.158 0.00 0.00 0.00 4.02
7161 7446 1.377994 CTTGCCTGCTCCTTCCACT 59.622 57.895 0.00 0.00 0.00 4.00
7162 7447 0.615331 CTTGCCTGCTCCTTCCACTA 59.385 55.000 0.00 0.00 0.00 2.74
7163 7448 0.324943 TTGCCTGCTCCTTCCACTAC 59.675 55.000 0.00 0.00 0.00 2.73
7164 7449 0.835971 TGCCTGCTCCTTCCACTACA 60.836 55.000 0.00 0.00 0.00 2.74
7165 7450 0.107945 GCCTGCTCCTTCCACTACAG 60.108 60.000 0.00 0.00 0.00 2.74
7166 7451 1.561643 CCTGCTCCTTCCACTACAGA 58.438 55.000 0.00 0.00 0.00 3.41
7167 7452 1.902508 CCTGCTCCTTCCACTACAGAA 59.097 52.381 0.00 0.00 0.00 3.02
7168 7453 2.303022 CCTGCTCCTTCCACTACAGAAA 59.697 50.000 0.00 0.00 0.00 2.52
7169 7454 3.244561 CCTGCTCCTTCCACTACAGAAAA 60.245 47.826 0.00 0.00 0.00 2.29
7170 7455 4.389374 CTGCTCCTTCCACTACAGAAAAA 58.611 43.478 0.00 0.00 0.00 1.94
7190 7475 6.816134 AAAAACATGTTTTGCCTTGTCTTT 57.184 29.167 31.54 13.15 41.45 2.52
7191 7476 6.816134 AAAACATGTTTTGCCTTGTCTTTT 57.184 29.167 30.64 6.62 40.84 2.27
7192 7477 6.421377 AAACATGTTTTGCCTTGTCTTTTC 57.579 33.333 18.13 0.00 0.00 2.29
7193 7478 5.343307 ACATGTTTTGCCTTGTCTTTTCT 57.657 34.783 0.00 0.00 0.00 2.52
7194 7479 5.733676 ACATGTTTTGCCTTGTCTTTTCTT 58.266 33.333 0.00 0.00 0.00 2.52
7195 7480 5.581874 ACATGTTTTGCCTTGTCTTTTCTTG 59.418 36.000 0.00 0.00 0.00 3.02
7196 7481 4.502962 TGTTTTGCCTTGTCTTTTCTTGG 58.497 39.130 0.00 0.00 0.00 3.61
7197 7482 4.020662 TGTTTTGCCTTGTCTTTTCTTGGT 60.021 37.500 0.00 0.00 0.00 3.67
7198 7483 5.186021 TGTTTTGCCTTGTCTTTTCTTGGTA 59.814 36.000 0.00 0.00 0.00 3.25
7199 7484 4.911514 TTGCCTTGTCTTTTCTTGGTAC 57.088 40.909 0.00 0.00 0.00 3.34
7200 7485 2.875933 TGCCTTGTCTTTTCTTGGTACG 59.124 45.455 0.00 0.00 0.00 3.67
7201 7486 2.876550 GCCTTGTCTTTTCTTGGTACGT 59.123 45.455 0.00 0.00 0.00 3.57
7202 7487 3.059120 GCCTTGTCTTTTCTTGGTACGTC 60.059 47.826 0.00 0.00 0.00 4.34
7203 7488 3.183775 CCTTGTCTTTTCTTGGTACGTCG 59.816 47.826 0.00 0.00 0.00 5.12
7204 7489 3.713858 TGTCTTTTCTTGGTACGTCGA 57.286 42.857 0.00 0.00 0.00 4.20
7205 7490 4.044336 TGTCTTTTCTTGGTACGTCGAA 57.956 40.909 0.00 0.00 0.00 3.71
7206 7491 4.624015 TGTCTTTTCTTGGTACGTCGAAT 58.376 39.130 0.00 0.00 0.00 3.34
7207 7492 4.446385 TGTCTTTTCTTGGTACGTCGAATG 59.554 41.667 0.00 0.00 0.00 2.67
7208 7493 4.446719 GTCTTTTCTTGGTACGTCGAATGT 59.553 41.667 0.00 0.00 0.00 2.71
7209 7494 5.050567 GTCTTTTCTTGGTACGTCGAATGTT 60.051 40.000 0.00 0.00 0.00 2.71
7210 7495 6.144402 GTCTTTTCTTGGTACGTCGAATGTTA 59.856 38.462 0.00 0.00 0.00 2.41
7211 7496 6.700960 TCTTTTCTTGGTACGTCGAATGTTAA 59.299 34.615 0.00 0.00 0.00 2.01
7212 7497 7.385752 TCTTTTCTTGGTACGTCGAATGTTAAT 59.614 33.333 0.00 0.00 0.00 1.40
7213 7498 7.424227 TTTCTTGGTACGTCGAATGTTAATT 57.576 32.000 0.00 0.00 0.00 1.40
7214 7499 7.424227 TTCTTGGTACGTCGAATGTTAATTT 57.576 32.000 0.00 0.00 0.00 1.82
7215 7500 8.531622 TTCTTGGTACGTCGAATGTTAATTTA 57.468 30.769 0.00 0.00 0.00 1.40
7216 7501 8.706492 TCTTGGTACGTCGAATGTTAATTTAT 57.294 30.769 0.00 0.00 0.00 1.40
7217 7502 9.153721 TCTTGGTACGTCGAATGTTAATTTATT 57.846 29.630 0.00 0.00 0.00 1.40
7218 7503 9.205916 CTTGGTACGTCGAATGTTAATTTATTG 57.794 33.333 0.00 0.00 0.00 1.90
7219 7504 7.686519 TGGTACGTCGAATGTTAATTTATTGG 58.313 34.615 0.00 0.00 0.00 3.16
7220 7505 7.333921 TGGTACGTCGAATGTTAATTTATTGGT 59.666 33.333 0.00 0.00 0.00 3.67
7221 7506 7.847564 GGTACGTCGAATGTTAATTTATTGGTC 59.152 37.037 0.00 0.00 0.00 4.02
7222 7507 6.778108 ACGTCGAATGTTAATTTATTGGTCC 58.222 36.000 0.00 0.00 0.00 4.46
7223 7508 6.183360 ACGTCGAATGTTAATTTATTGGTCCC 60.183 38.462 0.00 0.00 0.00 4.46
7224 7509 6.500910 GTCGAATGTTAATTTATTGGTCCCC 58.499 40.000 0.00 0.00 0.00 4.81
7225 7510 6.320418 GTCGAATGTTAATTTATTGGTCCCCT 59.680 38.462 0.00 0.00 0.00 4.79
7226 7511 6.544564 TCGAATGTTAATTTATTGGTCCCCTC 59.455 38.462 0.00 0.00 0.00 4.30
7227 7512 6.546034 CGAATGTTAATTTATTGGTCCCCTCT 59.454 38.462 0.00 0.00 0.00 3.69
7228 7513 7.068226 CGAATGTTAATTTATTGGTCCCCTCTT 59.932 37.037 0.00 0.00 0.00 2.85
7229 7514 9.416284 GAATGTTAATTTATTGGTCCCCTCTTA 57.584 33.333 0.00 0.00 0.00 2.10
7230 7515 9.777008 AATGTTAATTTATTGGTCCCCTCTTAA 57.223 29.630 0.00 0.00 0.00 1.85
7231 7516 8.817092 TGTTAATTTATTGGTCCCCTCTTAAG 57.183 34.615 0.00 0.00 0.00 1.85
7232 7517 8.395605 TGTTAATTTATTGGTCCCCTCTTAAGT 58.604 33.333 1.63 0.00 0.00 2.24
7233 7518 9.251440 GTTAATTTATTGGTCCCCTCTTAAGTT 57.749 33.333 1.63 0.00 0.00 2.66
7234 7519 7.718334 AATTTATTGGTCCCCTCTTAAGTTG 57.282 36.000 1.63 0.00 0.00 3.16
7235 7520 5.853572 TTATTGGTCCCCTCTTAAGTTGT 57.146 39.130 1.63 0.00 0.00 3.32
7236 7521 3.502123 TTGGTCCCCTCTTAAGTTGTG 57.498 47.619 1.63 0.00 0.00 3.33
7237 7522 2.414612 TGGTCCCCTCTTAAGTTGTGT 58.585 47.619 1.63 0.00 0.00 3.72
7238 7523 2.105821 TGGTCCCCTCTTAAGTTGTGTG 59.894 50.000 1.63 0.00 0.00 3.82
7239 7524 2.105993 GGTCCCCTCTTAAGTTGTGTGT 59.894 50.000 1.63 0.00 0.00 3.72
7240 7525 3.400255 GTCCCCTCTTAAGTTGTGTGTC 58.600 50.000 1.63 0.00 0.00 3.67
7241 7526 2.036733 TCCCCTCTTAAGTTGTGTGTCG 59.963 50.000 1.63 0.00 0.00 4.35
7242 7527 2.036733 CCCCTCTTAAGTTGTGTGTCGA 59.963 50.000 1.63 0.00 0.00 4.20
7243 7528 3.057734 CCCTCTTAAGTTGTGTGTCGAC 58.942 50.000 9.11 9.11 0.00 4.20
7244 7529 2.724690 CCTCTTAAGTTGTGTGTCGACG 59.275 50.000 11.62 0.00 35.69 5.12
7245 7530 2.121786 TCTTAAGTTGTGTGTCGACGC 58.878 47.619 22.00 22.00 35.69 5.19
7246 7531 1.191647 CTTAAGTTGTGTGTCGACGCC 59.808 52.381 25.28 16.78 35.69 5.68
7247 7532 0.102663 TAAGTTGTGTGTCGACGCCA 59.897 50.000 25.28 19.00 35.69 5.69
7248 7533 0.531974 AAGTTGTGTGTCGACGCCAT 60.532 50.000 25.28 7.16 35.69 4.40
7249 7534 1.204062 GTTGTGTGTCGACGCCATG 59.796 57.895 25.28 0.00 0.00 3.66
7250 7535 1.958715 TTGTGTGTCGACGCCATGG 60.959 57.895 25.28 7.63 0.00 3.66
7251 7536 3.788766 GTGTGTCGACGCCATGGC 61.789 66.667 27.67 27.67 37.85 4.40
7261 7546 3.436055 GCCATGGCGCACGGTAAA 61.436 61.111 23.48 0.00 0.00 2.01
7262 7547 2.791256 CCATGGCGCACGGTAAAG 59.209 61.111 10.83 0.00 0.00 1.85
7263 7548 1.743623 CCATGGCGCACGGTAAAGA 60.744 57.895 10.83 0.00 0.00 2.52
7264 7549 1.423845 CATGGCGCACGGTAAAGAC 59.576 57.895 10.83 0.00 0.00 3.01
7265 7550 1.004320 ATGGCGCACGGTAAAGACA 60.004 52.632 10.83 0.00 0.00 3.41
7266 7551 0.392461 ATGGCGCACGGTAAAGACAT 60.392 50.000 10.83 0.00 0.00 3.06
7267 7552 1.295357 TGGCGCACGGTAAAGACATG 61.295 55.000 10.83 0.00 0.00 3.21
7268 7553 1.296056 GGCGCACGGTAAAGACATGT 61.296 55.000 10.83 0.00 0.00 3.21
7269 7554 0.094730 GCGCACGGTAAAGACATGTC 59.905 55.000 18.47 18.47 0.00 3.06
7270 7555 0.365523 CGCACGGTAAAGACATGTCG 59.634 55.000 19.85 10.31 34.09 4.35
7271 7556 0.094730 GCACGGTAAAGACATGTCGC 59.905 55.000 19.85 10.84 34.09 5.19
7272 7557 1.710013 CACGGTAAAGACATGTCGCT 58.290 50.000 19.85 13.22 34.09 4.93
7273 7558 1.654105 CACGGTAAAGACATGTCGCTC 59.346 52.381 19.85 11.48 34.09 5.03
7274 7559 1.271379 ACGGTAAAGACATGTCGCTCA 59.729 47.619 19.85 4.45 34.09 4.26
7275 7560 1.920574 CGGTAAAGACATGTCGCTCAG 59.079 52.381 19.85 7.85 34.09 3.35
7276 7561 1.661112 GGTAAAGACATGTCGCTCAGC 59.339 52.381 19.85 12.06 34.09 4.26
7294 7579 4.876828 GTACCGCCGCATACGCCA 62.877 66.667 0.00 0.00 38.22 5.69
7295 7580 3.918977 TACCGCCGCATACGCCAT 61.919 61.111 0.00 0.00 38.22 4.40
7298 7583 4.000557 CGCCGCATACGCCATGAC 62.001 66.667 0.00 0.00 36.69 3.06
7299 7584 2.894879 GCCGCATACGCCATGACA 60.895 61.111 0.00 0.00 36.69 3.58
7300 7585 2.253758 GCCGCATACGCCATGACAT 61.254 57.895 0.00 0.00 36.69 3.06
7301 7586 1.570967 CCGCATACGCCATGACATG 59.429 57.895 8.56 8.56 36.69 3.21
7312 7597 2.989909 CCATGACATGGCTCAGTAACA 58.010 47.619 21.35 0.00 44.70 2.41
7313 7598 2.679837 CCATGACATGGCTCAGTAACAC 59.320 50.000 21.35 0.00 44.70 3.32
7314 7599 3.603532 CATGACATGGCTCAGTAACACT 58.396 45.455 7.60 0.00 0.00 3.55
7315 7600 3.769739 TGACATGGCTCAGTAACACTT 57.230 42.857 0.00 0.00 0.00 3.16
7316 7601 3.402110 TGACATGGCTCAGTAACACTTG 58.598 45.455 0.00 0.00 0.00 3.16
7317 7602 2.744202 GACATGGCTCAGTAACACTTGG 59.256 50.000 0.00 0.00 0.00 3.61
7318 7603 1.470098 CATGGCTCAGTAACACTTGGC 59.530 52.381 0.00 0.00 0.00 4.52
7319 7604 0.602638 TGGCTCAGTAACACTTGGCG 60.603 55.000 0.00 0.00 30.79 5.69
7320 7605 0.602905 GGCTCAGTAACACTTGGCGT 60.603 55.000 0.00 0.00 0.00 5.68
7321 7606 1.337447 GGCTCAGTAACACTTGGCGTA 60.337 52.381 0.00 0.00 0.00 4.42
7322 7607 1.725164 GCTCAGTAACACTTGGCGTAC 59.275 52.381 0.00 0.00 0.00 3.67
7323 7608 2.334838 CTCAGTAACACTTGGCGTACC 58.665 52.381 0.00 0.00 0.00 3.34
7335 7620 2.348660 TGGCGTACCAAAATAACTCGG 58.651 47.619 0.00 0.00 45.37 4.63
7336 7621 1.063027 GGCGTACCAAAATAACTCGGC 59.937 52.381 0.00 0.00 35.26 5.54
7337 7622 1.267186 GCGTACCAAAATAACTCGGCG 60.267 52.381 0.00 0.00 0.00 6.46
7338 7623 1.994779 CGTACCAAAATAACTCGGCGT 59.005 47.619 6.85 0.00 0.00 5.68
7339 7624 3.178267 CGTACCAAAATAACTCGGCGTA 58.822 45.455 6.85 0.00 0.00 4.42
7340 7625 3.798337 CGTACCAAAATAACTCGGCGTAT 59.202 43.478 6.85 0.00 0.00 3.06
7341 7626 4.268405 CGTACCAAAATAACTCGGCGTATT 59.732 41.667 6.85 5.15 0.00 1.89
7342 7627 4.609691 ACCAAAATAACTCGGCGTATTG 57.390 40.909 6.85 3.29 0.00 1.90
7343 7628 3.375922 ACCAAAATAACTCGGCGTATTGG 59.624 43.478 6.85 13.61 0.00 3.16
7344 7629 3.242936 CCAAAATAACTCGGCGTATTGGG 60.243 47.826 6.85 6.12 0.00 4.12
7345 7630 2.249844 AATAACTCGGCGTATTGGGG 57.750 50.000 6.85 0.00 0.00 4.96
7346 7631 1.125633 ATAACTCGGCGTATTGGGGT 58.874 50.000 6.85 0.00 0.00 4.95
7347 7632 0.903942 TAACTCGGCGTATTGGGGTT 59.096 50.000 6.85 4.94 0.00 4.11
7348 7633 0.675522 AACTCGGCGTATTGGGGTTG 60.676 55.000 6.85 0.00 0.00 3.77
7349 7634 1.219664 CTCGGCGTATTGGGGTTGA 59.780 57.895 6.85 0.00 0.00 3.18
7350 7635 0.391927 CTCGGCGTATTGGGGTTGAA 60.392 55.000 6.85 0.00 0.00 2.69
7351 7636 0.391927 TCGGCGTATTGGGGTTGAAG 60.392 55.000 6.85 0.00 0.00 3.02
7352 7637 0.675522 CGGCGTATTGGGGTTGAAGT 60.676 55.000 0.00 0.00 0.00 3.01
7353 7638 1.092348 GGCGTATTGGGGTTGAAGTC 58.908 55.000 0.00 0.00 0.00 3.01
7354 7639 0.725117 GCGTATTGGGGTTGAAGTCG 59.275 55.000 0.00 0.00 0.00 4.18
7355 7640 1.673626 GCGTATTGGGGTTGAAGTCGA 60.674 52.381 0.00 0.00 0.00 4.20
7356 7641 2.268298 CGTATTGGGGTTGAAGTCGAG 58.732 52.381 0.00 0.00 0.00 4.04
7357 7642 2.629051 GTATTGGGGTTGAAGTCGAGG 58.371 52.381 0.00 0.00 0.00 4.63
7358 7643 0.328258 ATTGGGGTTGAAGTCGAGGG 59.672 55.000 0.00 0.00 0.00 4.30
7359 7644 1.057851 TTGGGGTTGAAGTCGAGGGT 61.058 55.000 0.00 0.00 0.00 4.34
7360 7645 1.295746 GGGGTTGAAGTCGAGGGTC 59.704 63.158 0.00 0.00 0.00 4.46
7361 7646 1.080025 GGGTTGAAGTCGAGGGTCG 60.080 63.158 0.00 0.00 42.10 4.79
7362 7647 1.664306 GGTTGAAGTCGAGGGTCGT 59.336 57.895 0.00 0.00 41.35 4.34
7363 7648 0.388263 GGTTGAAGTCGAGGGTCGTC 60.388 60.000 0.00 0.00 41.35 4.20
7364 7649 0.728466 GTTGAAGTCGAGGGTCGTCG 60.728 60.000 6.72 6.72 41.35 5.12
7365 7650 1.168407 TTGAAGTCGAGGGTCGTCGT 61.168 55.000 11.84 0.00 41.35 4.34
7366 7651 1.154263 GAAGTCGAGGGTCGTCGTG 60.154 63.158 11.84 0.00 41.35 4.35
7367 7652 2.524636 GAAGTCGAGGGTCGTCGTGG 62.525 65.000 11.84 0.00 41.35 4.94
7368 7653 4.773117 GTCGAGGGTCGTCGTGGC 62.773 72.222 11.84 2.48 41.35 5.01
7374 7659 4.783734 GGTCGTCGTGGCCCGTAC 62.784 72.222 12.46 9.57 37.94 3.67
7386 7671 3.102515 CCCGTACGGCGAATAGATG 57.897 57.895 29.15 7.92 44.77 2.90
7387 7672 1.007336 CCCGTACGGCGAATAGATGC 61.007 60.000 29.15 0.00 44.77 3.91
7388 7673 0.318360 CCGTACGGCGAATAGATGCA 60.318 55.000 23.44 0.00 44.77 3.96
7389 7674 0.776451 CGTACGGCGAATAGATGCAC 59.224 55.000 16.62 0.00 44.77 4.57
7390 7675 1.137513 GTACGGCGAATAGATGCACC 58.862 55.000 16.62 0.00 0.00 5.01
7391 7676 0.747852 TACGGCGAATAGATGCACCA 59.252 50.000 16.62 0.00 0.00 4.17
7392 7677 0.810031 ACGGCGAATAGATGCACCAC 60.810 55.000 16.62 0.00 0.00 4.16
7393 7678 1.821241 CGGCGAATAGATGCACCACG 61.821 60.000 0.00 0.00 0.00 4.94
7394 7679 0.810031 GGCGAATAGATGCACCACGT 60.810 55.000 0.00 0.00 0.00 4.49
7395 7680 0.577269 GCGAATAGATGCACCACGTC 59.423 55.000 0.00 0.00 34.19 4.34
7396 7681 0.846401 CGAATAGATGCACCACGTCG 59.154 55.000 0.00 0.00 39.47 5.12
7397 7682 0.577269 GAATAGATGCACCACGTCGC 59.423 55.000 0.00 0.00 39.47 5.19
7398 7683 0.810031 AATAGATGCACCACGTCGCC 60.810 55.000 0.00 0.00 39.47 5.54
7399 7684 2.954020 ATAGATGCACCACGTCGCCG 62.954 60.000 0.00 0.00 39.47 6.46
7410 7695 4.450122 GTCGCCGTACTCGTCGCA 62.450 66.667 4.69 0.00 38.31 5.10
7411 7696 4.156622 TCGCCGTACTCGTCGCAG 62.157 66.667 4.69 0.00 38.31 5.18
7412 7697 4.456253 CGCCGTACTCGTCGCAGT 62.456 66.667 0.00 0.00 30.80 4.40
7413 7698 2.126580 GCCGTACTCGTCGCAGTT 60.127 61.111 3.29 0.00 35.01 3.16
7414 7699 2.150837 GCCGTACTCGTCGCAGTTC 61.151 63.158 3.29 0.00 35.01 3.01
7415 7700 1.208358 CCGTACTCGTCGCAGTTCA 59.792 57.895 3.29 0.00 35.01 3.18
7416 7701 1.063951 CCGTACTCGTCGCAGTTCAC 61.064 60.000 3.29 0.00 35.01 3.18
7417 7702 1.386293 CGTACTCGTCGCAGTTCACG 61.386 60.000 3.29 4.87 37.36 4.35
7418 7703 1.063951 GTACTCGTCGCAGTTCACGG 61.064 60.000 3.29 0.00 36.64 4.94
7419 7704 2.791396 TACTCGTCGCAGTTCACGGC 62.791 60.000 3.29 0.00 36.64 5.68
7423 7708 4.717629 TCGCAGTTCACGGCCGAG 62.718 66.667 35.90 26.34 33.45 4.63
7425 7710 3.414700 GCAGTTCACGGCCGAGTG 61.415 66.667 35.90 23.29 43.11 3.51
7426 7711 2.029073 CAGTTCACGGCCGAGTGT 59.971 61.111 35.90 6.02 42.40 3.55
7427 7712 1.594293 CAGTTCACGGCCGAGTGTT 60.594 57.895 35.90 5.52 42.40 3.32
7428 7713 1.594293 AGTTCACGGCCGAGTGTTG 60.594 57.895 35.90 19.97 42.40 3.33
7429 7714 1.885850 GTTCACGGCCGAGTGTTGT 60.886 57.895 35.90 3.57 42.40 3.32
7430 7715 1.593209 TTCACGGCCGAGTGTTGTC 60.593 57.895 35.90 0.00 42.40 3.18
7431 7716 2.023414 TTCACGGCCGAGTGTTGTCT 62.023 55.000 35.90 1.64 42.40 3.41
7432 7717 1.174078 TCACGGCCGAGTGTTGTCTA 61.174 55.000 35.90 1.37 42.40 2.59
7433 7718 0.319211 CACGGCCGAGTGTTGTCTAA 60.319 55.000 35.90 0.00 37.35 2.10
7434 7719 0.319297 ACGGCCGAGTGTTGTCTAAC 60.319 55.000 35.90 0.00 37.32 2.34
7435 7720 1.342082 CGGCCGAGTGTTGTCTAACG 61.342 60.000 24.07 0.00 39.71 3.18
7436 7721 0.038892 GGCCGAGTGTTGTCTAACGA 60.039 55.000 0.00 0.00 39.71 3.85
7437 7722 1.603678 GGCCGAGTGTTGTCTAACGAA 60.604 52.381 0.00 0.00 39.71 3.85
7438 7723 2.334838 GCCGAGTGTTGTCTAACGAAT 58.665 47.619 0.00 0.00 39.71 3.34
7439 7724 2.344741 GCCGAGTGTTGTCTAACGAATC 59.655 50.000 0.00 0.00 39.71 2.52
7440 7725 2.921754 CCGAGTGTTGTCTAACGAATCC 59.078 50.000 0.00 0.00 39.71 3.01
7441 7726 2.921754 CGAGTGTTGTCTAACGAATCCC 59.078 50.000 0.00 0.00 39.71 3.85
7442 7727 2.921754 GAGTGTTGTCTAACGAATCCCG 59.078 50.000 0.00 0.00 45.44 5.14
7452 7737 3.635433 CGAATCCCGTGACGTACAT 57.365 52.632 3.64 0.00 0.00 2.29
7453 7738 2.761392 CGAATCCCGTGACGTACATA 57.239 50.000 3.64 0.00 0.00 2.29
7454 7739 3.069074 CGAATCCCGTGACGTACATAA 57.931 47.619 3.64 0.00 0.00 1.90
7455 7740 2.785477 CGAATCCCGTGACGTACATAAC 59.215 50.000 3.64 0.00 0.00 1.89
7456 7741 3.731565 CGAATCCCGTGACGTACATAACA 60.732 47.826 3.64 0.00 0.00 2.41
7457 7742 4.365723 GAATCCCGTGACGTACATAACAT 58.634 43.478 3.64 0.00 0.00 2.71
7458 7743 5.518848 AATCCCGTGACGTACATAACATA 57.481 39.130 3.64 0.00 0.00 2.29
7459 7744 5.717078 ATCCCGTGACGTACATAACATAT 57.283 39.130 3.64 0.00 0.00 1.78
7460 7745 5.518848 TCCCGTGACGTACATAACATATT 57.481 39.130 3.64 0.00 0.00 1.28
7461 7746 5.904941 TCCCGTGACGTACATAACATATTT 58.095 37.500 3.64 0.00 0.00 1.40
7462 7747 6.339730 TCCCGTGACGTACATAACATATTTT 58.660 36.000 3.64 0.00 0.00 1.82
7463 7748 6.476380 TCCCGTGACGTACATAACATATTTTC 59.524 38.462 3.64 0.00 0.00 2.29
7464 7749 6.477688 CCCGTGACGTACATAACATATTTTCT 59.522 38.462 3.64 0.00 0.00 2.52
7465 7750 7.010738 CCCGTGACGTACATAACATATTTTCTT 59.989 37.037 3.64 0.00 0.00 2.52
7466 7751 8.054236 CCGTGACGTACATAACATATTTTCTTC 58.946 37.037 3.64 0.00 0.00 2.87
7467 7752 8.804743 CGTGACGTACATAACATATTTTCTTCT 58.195 33.333 0.00 0.00 0.00 2.85
7468 7753 9.901724 GTGACGTACATAACATATTTTCTTCTG 57.098 33.333 0.00 0.00 0.00 3.02
7469 7754 9.647797 TGACGTACATAACATATTTTCTTCTGT 57.352 29.630 0.00 0.00 0.00 3.41
7492 7777 6.707711 GTTTTAAACCGAAAACATTTGGTCC 58.292 36.000 6.84 0.00 44.93 4.46
7493 7778 5.593679 TTAAACCGAAAACATTTGGTCCA 57.406 34.783 1.09 0.00 37.73 4.02
7494 7779 3.446310 AACCGAAAACATTTGGTCCAC 57.554 42.857 0.00 0.00 37.73 4.02
7495 7780 2.661718 ACCGAAAACATTTGGTCCACT 58.338 42.857 0.00 0.00 33.44 4.00
7496 7781 2.360801 ACCGAAAACATTTGGTCCACTG 59.639 45.455 0.00 0.00 33.44 3.66
7497 7782 2.360801 CCGAAAACATTTGGTCCACTGT 59.639 45.455 0.00 0.00 0.00 3.55
7498 7783 3.566322 CCGAAAACATTTGGTCCACTGTA 59.434 43.478 6.68 0.00 0.00 2.74
7499 7784 4.036971 CCGAAAACATTTGGTCCACTGTAA 59.963 41.667 6.68 0.00 0.00 2.41
7500 7785 5.212194 CGAAAACATTTGGTCCACTGTAAG 58.788 41.667 6.68 0.00 42.29 2.34
7501 7786 4.584327 AAACATTTGGTCCACTGTAAGC 57.416 40.909 6.68 0.00 37.60 3.09
7502 7787 2.514803 ACATTTGGTCCACTGTAAGCC 58.485 47.619 4.73 0.00 37.60 4.35
7503 7788 1.468520 CATTTGGTCCACTGTAAGCCG 59.531 52.381 0.00 0.00 37.60 5.52
7504 7789 0.759959 TTTGGTCCACTGTAAGCCGA 59.240 50.000 0.00 0.00 37.60 5.54
7505 7790 0.320374 TTGGTCCACTGTAAGCCGAG 59.680 55.000 0.00 0.00 37.60 4.63
7506 7791 0.830444 TGGTCCACTGTAAGCCGAGT 60.830 55.000 0.00 0.00 37.60 4.18
7507 7792 0.389948 GGTCCACTGTAAGCCGAGTG 60.390 60.000 0.00 0.00 37.60 3.51
7509 7794 4.598257 CACTGTAAGCCGAGTGGG 57.402 61.111 0.00 0.00 37.60 4.61
7516 7801 4.533318 AGCCGAGTGGGTGACTTA 57.467 55.556 0.00 0.00 46.48 2.24
7517 7802 2.754648 AGCCGAGTGGGTGACTTAA 58.245 52.632 0.00 0.00 46.48 1.85
7518 7803 1.276622 AGCCGAGTGGGTGACTTAAT 58.723 50.000 0.00 0.00 46.48 1.40
7519 7804 2.463752 AGCCGAGTGGGTGACTTAATA 58.536 47.619 0.00 0.00 46.48 0.98
7520 7805 2.167900 AGCCGAGTGGGTGACTTAATAC 59.832 50.000 0.00 0.00 46.48 1.89
7521 7806 2.093869 GCCGAGTGGGTGACTTAATACA 60.094 50.000 0.00 0.00 38.44 2.29
7522 7807 3.518590 CCGAGTGGGTGACTTAATACAC 58.481 50.000 0.00 0.00 33.83 2.90
7523 7808 3.194968 CCGAGTGGGTGACTTAATACACT 59.805 47.826 0.00 0.00 41.40 3.55
7524 7809 4.421948 CGAGTGGGTGACTTAATACACTC 58.578 47.826 11.43 11.43 46.78 3.51
7525 7810 4.421948 GAGTGGGTGACTTAATACACTCG 58.578 47.826 6.84 0.00 43.35 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
188 189 1.378646 GCCCAAAGTAGGCCCTGAC 60.379 63.158 0.00 0.00 45.16 3.51
250 254 3.201266 ACTTCTCGATCCAGACTAGGACT 59.799 47.826 0.00 0.00 41.30 3.85
321 325 1.359848 GCGGTGTTGATCTTGATCGT 58.640 50.000 6.19 0.00 0.00 3.73
530 541 4.765449 CTGCTGCTGCGCCCACTA 62.765 66.667 4.18 0.00 43.34 2.74
669 683 2.092429 TGCATCTGATTAGGTCCCCAAC 60.092 50.000 0.00 0.00 0.00 3.77
717 731 1.675641 GAATTGCAGACCGGTGCCT 60.676 57.895 14.63 0.00 43.28 4.75
822 841 3.004106 GCTGCTGAGTCTGATTGTTGTTT 59.996 43.478 0.47 0.00 0.00 2.83
920 939 2.742053 CCACATGTGTAGCAGGTAACAC 59.258 50.000 23.79 0.00 40.46 3.32
1025 1044 5.281314 TCCTAGGCTTCTTTCTAACTGGAT 58.719 41.667 2.96 0.00 0.00 3.41
1149 1168 4.580580 CCAGCTTCTATGTAAACAATCCCC 59.419 45.833 0.00 0.00 0.00 4.81
1248 1267 5.081032 ACTAGAAAAGTCCAGCTGTCTAGT 58.919 41.667 25.46 25.46 43.71 2.57
1550 1569 8.189119 AGGAATTTTGGTAAAGTCTTTGCATA 57.811 30.769 14.36 1.49 38.18 3.14
1598 1618 9.107177 CAATCTTGATCTTATACAGCTTGTCTT 57.893 33.333 0.00 0.00 0.00 3.01
1705 1725 3.635836 TCATCACTGTTGGCATTGTTCAA 59.364 39.130 0.00 0.00 0.00 2.69
1896 1916 3.902467 CCTCCTCATCATCTCCAATCTCA 59.098 47.826 0.00 0.00 0.00 3.27
1978 2010 3.555966 CTGGACTGAAAACCACTTCCTT 58.444 45.455 0.00 0.00 32.44 3.36
2066 2098 5.047519 CCAATGTCAATTCTGGAGCTCTTTT 60.048 40.000 14.64 0.00 0.00 2.27
2273 2305 7.974504 AGGGATTTTGTTCTTAGAGACTACAA 58.025 34.615 0.00 0.00 0.00 2.41
2469 2510 1.068741 GAGCTCCTGTATAACCCCACG 59.931 57.143 0.87 0.00 0.00 4.94
2479 2520 3.200165 TCAGTAGCAGTAGAGCTCCTGTA 59.800 47.826 17.84 8.95 45.50 2.74
2908 2950 4.600547 TCTTTGCCCTCATCATATGGAGAT 59.399 41.667 9.77 0.00 32.87 2.75
3084 3127 6.179906 TCCTAATTTCTAGAAGGCTCCATG 57.820 41.667 5.12 0.00 0.00 3.66
3113 3156 5.514500 TTAGCCCAACTGAATTTCCTACT 57.486 39.130 0.00 0.00 0.00 2.57
3126 3169 6.017026 GCTATTCTCTTGGTTATTAGCCCAAC 60.017 42.308 0.00 0.00 35.84 3.77
3666 3714 4.941263 GGTTGGCTACATCAATGAAGTACA 59.059 41.667 0.80 0.00 0.00 2.90
3675 3723 3.073798 TCTCCTTTGGTTGGCTACATCAA 59.926 43.478 0.80 0.00 0.00 2.57
3807 3856 9.672673 CTTGTCTTAAATTGAATCCTCCTCTAA 57.327 33.333 0.00 0.00 0.00 2.10
3885 3937 6.420008 CAGTTCTTTTTCAGAAAATGGAGCTG 59.580 38.462 24.25 24.25 43.52 4.24
3908 3960 4.219070 TGAACCAAAGATTGCATCCTTCAG 59.781 41.667 0.00 0.00 0.00 3.02
3919 3971 7.020827 TCCTTCAGAGTATGAACCAAAGATT 57.979 36.000 0.00 0.00 43.09 2.40
3946 3998 1.422161 ATAGGCCATCTGGTCCAGGC 61.422 60.000 19.11 15.02 41.83 4.85
4176 4230 7.004691 TCATGAGAGTAGCAAGCCTATTAGTA 58.995 38.462 0.00 0.00 0.00 1.82
5312 5573 3.941704 ACCCCTTGCCAAAAATTTGAA 57.058 38.095 7.44 0.00 40.55 2.69
5467 5728 3.351740 ACTGTCACACATTGTTGGTGAA 58.648 40.909 10.53 3.25 42.59 3.18
5606 5867 3.812262 CCAGACCATAGCATCAACATCA 58.188 45.455 0.00 0.00 0.00 3.07
6024 6287 8.409358 AACATGCTTATTTCTAGTTTTCCACT 57.591 30.769 0.00 0.00 39.87 4.00
6084 6347 1.270414 CCTCCAGATCAGCCACCAGT 61.270 60.000 0.00 0.00 0.00 4.00
6388 6651 0.465460 GGTTGAGTTGGTGTGCCAGA 60.465 55.000 0.00 0.00 46.91 3.86
7044 7329 6.294176 CCTTTTGACATGGACGAGAGAAATTT 60.294 38.462 0.00 0.00 0.00 1.82
7045 7330 5.182001 CCTTTTGACATGGACGAGAGAAATT 59.818 40.000 0.00 0.00 0.00 1.82
7046 7331 4.697352 CCTTTTGACATGGACGAGAGAAAT 59.303 41.667 0.00 0.00 0.00 2.17
7047 7332 4.065088 CCTTTTGACATGGACGAGAGAAA 58.935 43.478 0.00 0.00 0.00 2.52
7048 7333 3.323691 TCCTTTTGACATGGACGAGAGAA 59.676 43.478 0.00 0.00 0.00 2.87
7049 7334 2.897326 TCCTTTTGACATGGACGAGAGA 59.103 45.455 0.00 0.00 0.00 3.10
7050 7335 3.319137 TCCTTTTGACATGGACGAGAG 57.681 47.619 0.00 0.00 0.00 3.20
7051 7336 3.762407 TTCCTTTTGACATGGACGAGA 57.238 42.857 0.00 0.00 0.00 4.04
7052 7337 4.829064 TTTTCCTTTTGACATGGACGAG 57.171 40.909 0.00 0.00 0.00 4.18
7072 7357 6.284459 AGAGAGTGTCAACGAGAGAATTTTT 58.716 36.000 0.00 0.00 0.00 1.94
7073 7358 5.848406 AGAGAGTGTCAACGAGAGAATTTT 58.152 37.500 0.00 0.00 0.00 1.82
7074 7359 5.461032 AGAGAGTGTCAACGAGAGAATTT 57.539 39.130 0.00 0.00 0.00 1.82
7075 7360 5.242838 AGAAGAGAGTGTCAACGAGAGAATT 59.757 40.000 0.00 0.00 0.00 2.17
7076 7361 4.764823 AGAAGAGAGTGTCAACGAGAGAAT 59.235 41.667 0.00 0.00 0.00 2.40
7077 7362 4.138290 AGAAGAGAGTGTCAACGAGAGAA 58.862 43.478 0.00 0.00 0.00 2.87
7078 7363 3.745799 AGAAGAGAGTGTCAACGAGAGA 58.254 45.455 0.00 0.00 0.00 3.10
7079 7364 3.751175 AGAGAAGAGAGTGTCAACGAGAG 59.249 47.826 0.00 0.00 0.00 3.20
7080 7365 3.500299 CAGAGAAGAGAGTGTCAACGAGA 59.500 47.826 0.00 0.00 0.00 4.04
7081 7366 3.820689 CAGAGAAGAGAGTGTCAACGAG 58.179 50.000 0.00 0.00 0.00 4.18
7082 7367 2.030717 GCAGAGAAGAGAGTGTCAACGA 60.031 50.000 0.00 0.00 0.00 3.85
7083 7368 2.287849 TGCAGAGAAGAGAGTGTCAACG 60.288 50.000 0.00 0.00 0.00 4.10
7084 7369 3.377346 TGCAGAGAAGAGAGTGTCAAC 57.623 47.619 0.00 0.00 0.00 3.18
7085 7370 4.613925 ATTGCAGAGAAGAGAGTGTCAA 57.386 40.909 0.00 0.00 0.00 3.18
7086 7371 4.524328 TGTATTGCAGAGAAGAGAGTGTCA 59.476 41.667 0.00 0.00 0.00 3.58
7087 7372 5.065704 TGTATTGCAGAGAAGAGAGTGTC 57.934 43.478 0.00 0.00 0.00 3.67
7088 7373 5.474578 TTGTATTGCAGAGAAGAGAGTGT 57.525 39.130 0.00 0.00 0.00 3.55
7089 7374 6.981762 ATTTGTATTGCAGAGAAGAGAGTG 57.018 37.500 0.00 0.00 0.00 3.51
7090 7375 7.375106 CAATTTGTATTGCAGAGAAGAGAGT 57.625 36.000 0.00 0.00 35.15 3.24
7103 7388 3.929094 ACAGCAAGGGCAATTTGTATTG 58.071 40.909 0.00 2.84 44.61 1.90
7104 7389 4.568956 GAACAGCAAGGGCAATTTGTATT 58.431 39.130 0.00 0.00 44.61 1.89
7105 7390 3.367292 CGAACAGCAAGGGCAATTTGTAT 60.367 43.478 0.00 0.00 44.61 2.29
7106 7391 2.030363 CGAACAGCAAGGGCAATTTGTA 60.030 45.455 0.00 0.00 44.61 2.41
7107 7392 1.269726 CGAACAGCAAGGGCAATTTGT 60.270 47.619 0.00 0.00 44.61 2.83
7108 7393 1.269726 ACGAACAGCAAGGGCAATTTG 60.270 47.619 0.00 0.00 44.61 2.32
7109 7394 1.039856 ACGAACAGCAAGGGCAATTT 58.960 45.000 0.00 0.00 44.61 1.82
7110 7395 1.539827 GTACGAACAGCAAGGGCAATT 59.460 47.619 0.00 0.00 44.61 2.32
7111 7396 1.165270 GTACGAACAGCAAGGGCAAT 58.835 50.000 0.00 0.00 44.61 3.56
7112 7397 0.107831 AGTACGAACAGCAAGGGCAA 59.892 50.000 0.00 0.00 44.61 4.52
7113 7398 0.320421 GAGTACGAACAGCAAGGGCA 60.320 55.000 0.00 0.00 44.61 5.36
7114 7399 1.352156 CGAGTACGAACAGCAAGGGC 61.352 60.000 0.00 0.00 42.66 5.19
7115 7400 1.352156 GCGAGTACGAACAGCAAGGG 61.352 60.000 0.00 0.00 42.66 3.95
7116 7401 1.352156 GGCGAGTACGAACAGCAAGG 61.352 60.000 0.00 0.00 42.66 3.61
7117 7402 1.674611 CGGCGAGTACGAACAGCAAG 61.675 60.000 0.00 0.00 42.66 4.01
7118 7403 1.731613 CGGCGAGTACGAACAGCAA 60.732 57.895 0.00 0.00 42.66 3.91
7119 7404 2.126618 CGGCGAGTACGAACAGCA 60.127 61.111 0.00 0.00 42.66 4.41
7120 7405 1.443194 TTCGGCGAGTACGAACAGC 60.443 57.895 10.46 0.00 44.41 4.40
7121 7406 4.853507 TTCGGCGAGTACGAACAG 57.146 55.556 10.46 0.00 44.41 3.16
7125 7410 2.176546 CCGTTTCGGCGAGTACGA 59.823 61.111 33.18 10.70 41.17 3.43
7135 7420 3.314388 GAGCAGGCAAGCCGTTTCG 62.314 63.158 5.28 0.00 41.95 3.46
7136 7421 2.563427 GAGCAGGCAAGCCGTTTC 59.437 61.111 5.28 1.04 41.95 2.78
7137 7422 2.983725 AAGGAGCAGGCAAGCCGTTT 62.984 55.000 5.28 0.00 41.95 3.60
7138 7423 3.497884 AAGGAGCAGGCAAGCCGTT 62.498 57.895 5.28 0.00 41.95 4.44
7139 7424 3.909086 GAAGGAGCAGGCAAGCCGT 62.909 63.158 5.28 0.00 41.95 5.68
7140 7425 3.130160 GAAGGAGCAGGCAAGCCG 61.130 66.667 5.28 2.12 41.95 5.52
7141 7426 2.753446 GGAAGGAGCAGGCAAGCC 60.753 66.667 2.02 2.02 34.23 4.35
7142 7427 2.034687 TGGAAGGAGCAGGCAAGC 59.965 61.111 0.00 0.00 0.00 4.01
7143 7428 0.615331 TAGTGGAAGGAGCAGGCAAG 59.385 55.000 0.00 0.00 0.00 4.01
7144 7429 0.324943 GTAGTGGAAGGAGCAGGCAA 59.675 55.000 0.00 0.00 0.00 4.52
7145 7430 0.835971 TGTAGTGGAAGGAGCAGGCA 60.836 55.000 0.00 0.00 0.00 4.75
7146 7431 0.107945 CTGTAGTGGAAGGAGCAGGC 60.108 60.000 0.00 0.00 0.00 4.85
7147 7432 1.561643 TCTGTAGTGGAAGGAGCAGG 58.438 55.000 0.00 0.00 0.00 4.85
7148 7433 3.685139 TTTCTGTAGTGGAAGGAGCAG 57.315 47.619 0.00 0.00 0.00 4.24
7149 7434 4.431416 TTTTTCTGTAGTGGAAGGAGCA 57.569 40.909 0.00 0.00 0.00 4.26
7167 7452 6.816134 AAAGACAAGGCAAAACATGTTTTT 57.184 29.167 29.42 16.72 40.45 1.94
7168 7453 6.654582 AGAAAAGACAAGGCAAAACATGTTTT 59.345 30.769 27.01 27.01 42.91 2.43
7169 7454 6.172630 AGAAAAGACAAGGCAAAACATGTTT 58.827 32.000 18.13 18.13 0.00 2.83
7170 7455 5.733676 AGAAAAGACAAGGCAAAACATGTT 58.266 33.333 4.92 4.92 0.00 2.71
7171 7456 5.343307 AGAAAAGACAAGGCAAAACATGT 57.657 34.783 0.00 0.00 0.00 3.21
7172 7457 5.006941 CCAAGAAAAGACAAGGCAAAACATG 59.993 40.000 0.00 0.00 0.00 3.21
7173 7458 5.118286 CCAAGAAAAGACAAGGCAAAACAT 58.882 37.500 0.00 0.00 0.00 2.71
7174 7459 4.020662 ACCAAGAAAAGACAAGGCAAAACA 60.021 37.500 0.00 0.00 0.00 2.83
7175 7460 4.503910 ACCAAGAAAAGACAAGGCAAAAC 58.496 39.130 0.00 0.00 0.00 2.43
7176 7461 4.817318 ACCAAGAAAAGACAAGGCAAAA 57.183 36.364 0.00 0.00 0.00 2.44
7177 7462 4.201970 CGTACCAAGAAAAGACAAGGCAAA 60.202 41.667 0.00 0.00 0.00 3.68
7178 7463 3.314080 CGTACCAAGAAAAGACAAGGCAA 59.686 43.478 0.00 0.00 0.00 4.52
7179 7464 2.875933 CGTACCAAGAAAAGACAAGGCA 59.124 45.455 0.00 0.00 0.00 4.75
7180 7465 2.876550 ACGTACCAAGAAAAGACAAGGC 59.123 45.455 0.00 0.00 0.00 4.35
7181 7466 3.183775 CGACGTACCAAGAAAAGACAAGG 59.816 47.826 0.00 0.00 0.00 3.61
7182 7467 4.046462 TCGACGTACCAAGAAAAGACAAG 58.954 43.478 0.00 0.00 0.00 3.16
7183 7468 4.044336 TCGACGTACCAAGAAAAGACAA 57.956 40.909 0.00 0.00 0.00 3.18
7184 7469 3.713858 TCGACGTACCAAGAAAAGACA 57.286 42.857 0.00 0.00 0.00 3.41
7185 7470 4.446719 ACATTCGACGTACCAAGAAAAGAC 59.553 41.667 0.00 0.00 0.00 3.01
7186 7471 4.624015 ACATTCGACGTACCAAGAAAAGA 58.376 39.130 0.00 0.00 0.00 2.52
7187 7472 4.985044 ACATTCGACGTACCAAGAAAAG 57.015 40.909 0.00 0.00 0.00 2.27
7188 7473 6.841443 TTAACATTCGACGTACCAAGAAAA 57.159 33.333 0.00 0.00 0.00 2.29
7189 7474 7.424227 AATTAACATTCGACGTACCAAGAAA 57.576 32.000 0.00 0.00 0.00 2.52
7190 7475 7.424227 AAATTAACATTCGACGTACCAAGAA 57.576 32.000 0.00 0.00 0.00 2.52
7191 7476 8.706492 ATAAATTAACATTCGACGTACCAAGA 57.294 30.769 0.00 0.00 0.00 3.02
7192 7477 9.205916 CAATAAATTAACATTCGACGTACCAAG 57.794 33.333 0.00 0.00 0.00 3.61
7193 7478 8.176365 CCAATAAATTAACATTCGACGTACCAA 58.824 33.333 0.00 0.00 0.00 3.67
7194 7479 7.333921 ACCAATAAATTAACATTCGACGTACCA 59.666 33.333 0.00 0.00 0.00 3.25
7195 7480 7.687445 ACCAATAAATTAACATTCGACGTACC 58.313 34.615 0.00 0.00 0.00 3.34
7196 7481 7.847564 GGACCAATAAATTAACATTCGACGTAC 59.152 37.037 0.00 0.00 0.00 3.67
7197 7482 7.011295 GGGACCAATAAATTAACATTCGACGTA 59.989 37.037 0.00 0.00 0.00 3.57
7198 7483 6.183360 GGGACCAATAAATTAACATTCGACGT 60.183 38.462 0.00 0.00 0.00 4.34
7199 7484 6.196571 GGGACCAATAAATTAACATTCGACG 58.803 40.000 0.00 0.00 0.00 5.12
7219 7504 3.400255 GACACACAACTTAAGAGGGGAC 58.600 50.000 10.09 0.00 0.00 4.46
7220 7505 2.036733 CGACACACAACTTAAGAGGGGA 59.963 50.000 10.09 0.00 0.00 4.81
7221 7506 2.036733 TCGACACACAACTTAAGAGGGG 59.963 50.000 10.09 4.15 0.00 4.79
7222 7507 3.057734 GTCGACACACAACTTAAGAGGG 58.942 50.000 11.55 4.94 0.00 4.30
7223 7508 2.724690 CGTCGACACACAACTTAAGAGG 59.275 50.000 17.16 3.03 0.00 3.69
7224 7509 2.153247 GCGTCGACACACAACTTAAGAG 59.847 50.000 17.16 3.81 0.00 2.85
7225 7510 2.121786 GCGTCGACACACAACTTAAGA 58.878 47.619 17.16 0.00 0.00 2.10
7226 7511 1.191647 GGCGTCGACACACAACTTAAG 59.808 52.381 17.16 0.00 0.00 1.85
7227 7512 1.210870 GGCGTCGACACACAACTTAA 58.789 50.000 17.16 0.00 0.00 1.85
7228 7513 0.102663 TGGCGTCGACACACAACTTA 59.897 50.000 17.16 0.00 0.00 2.24
7229 7514 0.531974 ATGGCGTCGACACACAACTT 60.532 50.000 17.16 0.00 0.00 2.66
7230 7515 1.069090 ATGGCGTCGACACACAACT 59.931 52.632 17.16 0.00 0.00 3.16
7231 7516 1.204062 CATGGCGTCGACACACAAC 59.796 57.895 17.16 0.00 0.00 3.32
7232 7517 1.958715 CCATGGCGTCGACACACAA 60.959 57.895 17.16 0.00 0.00 3.33
7233 7518 2.356913 CCATGGCGTCGACACACA 60.357 61.111 17.16 11.14 0.00 3.72
7234 7519 3.788766 GCCATGGCGTCGACACAC 61.789 66.667 23.48 5.27 0.00 3.82
7244 7529 3.395470 CTTTACCGTGCGCCATGGC 62.395 63.158 27.67 27.67 43.81 4.40
7245 7530 1.743623 TCTTTACCGTGCGCCATGG 60.744 57.895 7.63 7.63 45.34 3.66
7246 7531 1.295357 TGTCTTTACCGTGCGCCATG 61.295 55.000 4.18 0.00 0.00 3.66
7247 7532 0.392461 ATGTCTTTACCGTGCGCCAT 60.392 50.000 4.18 0.00 0.00 4.40
7248 7533 1.004320 ATGTCTTTACCGTGCGCCA 60.004 52.632 4.18 0.00 0.00 5.69
7249 7534 1.296056 ACATGTCTTTACCGTGCGCC 61.296 55.000 4.18 0.00 0.00 6.53
7250 7535 0.094730 GACATGTCTTTACCGTGCGC 59.905 55.000 18.83 0.00 0.00 6.09
7251 7536 0.365523 CGACATGTCTTTACCGTGCG 59.634 55.000 22.95 3.14 0.00 5.34
7252 7537 0.094730 GCGACATGTCTTTACCGTGC 59.905 55.000 22.95 12.54 0.00 5.34
7253 7538 1.654105 GAGCGACATGTCTTTACCGTG 59.346 52.381 22.95 6.52 0.00 4.94
7254 7539 1.271379 TGAGCGACATGTCTTTACCGT 59.729 47.619 22.95 1.45 0.00 4.83
7255 7540 1.920574 CTGAGCGACATGTCTTTACCG 59.079 52.381 22.95 10.85 0.00 4.02
7256 7541 1.661112 GCTGAGCGACATGTCTTTACC 59.339 52.381 22.95 8.56 0.00 2.85
7283 7568 1.570967 CATGTCATGGCGTATGCGG 59.429 57.895 5.09 0.00 44.10 5.69
7284 7569 1.570967 CCATGTCATGGCGTATGCG 59.429 57.895 18.91 0.00 44.70 4.73
7293 7578 3.603532 AGTGTTACTGAGCCATGTCATG 58.396 45.455 5.79 5.79 0.00 3.07
7294 7579 3.988976 AGTGTTACTGAGCCATGTCAT 57.011 42.857 0.00 0.00 0.00 3.06
7295 7580 3.402110 CAAGTGTTACTGAGCCATGTCA 58.598 45.455 0.00 0.00 0.00 3.58
7296 7581 2.744202 CCAAGTGTTACTGAGCCATGTC 59.256 50.000 0.00 0.00 0.00 3.06
7297 7582 2.783135 CCAAGTGTTACTGAGCCATGT 58.217 47.619 0.00 0.00 0.00 3.21
7298 7583 1.470098 GCCAAGTGTTACTGAGCCATG 59.530 52.381 0.00 0.00 0.00 3.66
7299 7584 1.826385 GCCAAGTGTTACTGAGCCAT 58.174 50.000 0.00 0.00 0.00 4.40
7300 7585 0.602638 CGCCAAGTGTTACTGAGCCA 60.603 55.000 0.00 0.00 0.00 4.75
7301 7586 0.602905 ACGCCAAGTGTTACTGAGCC 60.603 55.000 0.00 0.00 0.00 4.70
7302 7587 1.725164 GTACGCCAAGTGTTACTGAGC 59.275 52.381 0.00 0.00 0.00 4.26
7303 7588 2.288579 TGGTACGCCAAGTGTTACTGAG 60.289 50.000 0.00 0.00 42.83 3.35
7304 7589 1.687660 TGGTACGCCAAGTGTTACTGA 59.312 47.619 0.00 0.00 42.83 3.41
7305 7590 2.157834 TGGTACGCCAAGTGTTACTG 57.842 50.000 0.00 0.00 42.83 2.74
7315 7600 2.348660 CCGAGTTATTTTGGTACGCCA 58.651 47.619 0.00 0.00 44.38 5.69
7316 7601 1.063027 GCCGAGTTATTTTGGTACGCC 59.937 52.381 0.00 0.00 0.00 5.68
7317 7602 1.267186 CGCCGAGTTATTTTGGTACGC 60.267 52.381 0.00 0.00 0.00 4.42
7318 7603 1.994779 ACGCCGAGTTATTTTGGTACG 59.005 47.619 0.00 0.00 0.00 3.67
7319 7604 5.495502 CAATACGCCGAGTTATTTTGGTAC 58.504 41.667 0.00 0.00 0.00 3.34
7320 7605 4.571580 CCAATACGCCGAGTTATTTTGGTA 59.428 41.667 0.00 0.00 0.00 3.25
7321 7606 3.375922 CCAATACGCCGAGTTATTTTGGT 59.624 43.478 0.00 0.00 0.00 3.67
7322 7607 3.242936 CCCAATACGCCGAGTTATTTTGG 60.243 47.826 0.00 0.00 0.00 3.28
7323 7608 3.242936 CCCCAATACGCCGAGTTATTTTG 60.243 47.826 0.00 0.00 0.00 2.44
7324 7609 2.946990 CCCCAATACGCCGAGTTATTTT 59.053 45.455 0.00 0.00 0.00 1.82
7325 7610 2.092807 ACCCCAATACGCCGAGTTATTT 60.093 45.455 0.00 0.00 0.00 1.40
7326 7611 1.487558 ACCCCAATACGCCGAGTTATT 59.512 47.619 0.00 0.00 0.00 1.40
7327 7612 1.125633 ACCCCAATACGCCGAGTTAT 58.874 50.000 0.00 0.00 0.00 1.89
7328 7613 0.903942 AACCCCAATACGCCGAGTTA 59.096 50.000 0.00 0.00 0.00 2.24
7329 7614 0.675522 CAACCCCAATACGCCGAGTT 60.676 55.000 0.00 0.00 0.00 3.01
7330 7615 1.078708 CAACCCCAATACGCCGAGT 60.079 57.895 0.00 0.00 0.00 4.18
7331 7616 0.391927 TTCAACCCCAATACGCCGAG 60.392 55.000 0.00 0.00 0.00 4.63
7332 7617 0.391927 CTTCAACCCCAATACGCCGA 60.392 55.000 0.00 0.00 0.00 5.54
7333 7618 0.675522 ACTTCAACCCCAATACGCCG 60.676 55.000 0.00 0.00 0.00 6.46
7334 7619 1.092348 GACTTCAACCCCAATACGCC 58.908 55.000 0.00 0.00 0.00 5.68
7335 7620 0.725117 CGACTTCAACCCCAATACGC 59.275 55.000 0.00 0.00 0.00 4.42
7336 7621 2.268298 CTCGACTTCAACCCCAATACG 58.732 52.381 0.00 0.00 0.00 3.06
7337 7622 2.629051 CCTCGACTTCAACCCCAATAC 58.371 52.381 0.00 0.00 0.00 1.89
7338 7623 1.557832 CCCTCGACTTCAACCCCAATA 59.442 52.381 0.00 0.00 0.00 1.90
7339 7624 0.328258 CCCTCGACTTCAACCCCAAT 59.672 55.000 0.00 0.00 0.00 3.16
7340 7625 1.057851 ACCCTCGACTTCAACCCCAA 61.058 55.000 0.00 0.00 0.00 4.12
7341 7626 1.460689 ACCCTCGACTTCAACCCCA 60.461 57.895 0.00 0.00 0.00 4.96
7342 7627 1.295746 GACCCTCGACTTCAACCCC 59.704 63.158 0.00 0.00 0.00 4.95
7343 7628 1.080025 CGACCCTCGACTTCAACCC 60.080 63.158 0.00 0.00 43.74 4.11
7344 7629 0.388263 GACGACCCTCGACTTCAACC 60.388 60.000 0.00 0.00 43.74 3.77
7345 7630 0.728466 CGACGACCCTCGACTTCAAC 60.728 60.000 0.00 0.00 43.74 3.18
7346 7631 1.168407 ACGACGACCCTCGACTTCAA 61.168 55.000 0.00 0.00 43.74 2.69
7347 7632 1.598962 ACGACGACCCTCGACTTCA 60.599 57.895 0.00 0.00 43.74 3.02
7348 7633 1.154263 CACGACGACCCTCGACTTC 60.154 63.158 0.00 0.00 43.74 3.01
7349 7634 2.623915 CCACGACGACCCTCGACTT 61.624 63.158 0.00 0.00 43.74 3.01
7350 7635 3.054503 CCACGACGACCCTCGACT 61.055 66.667 0.00 0.00 43.74 4.18
7351 7636 4.773117 GCCACGACGACCCTCGAC 62.773 72.222 0.00 0.00 43.74 4.20
7368 7653 1.007336 GCATCTATTCGCCGTACGGG 61.007 60.000 33.98 23.55 43.89 5.28
7369 7654 0.318360 TGCATCTATTCGCCGTACGG 60.318 55.000 30.06 30.06 43.89 4.02
7370 7655 0.776451 GTGCATCTATTCGCCGTACG 59.224 55.000 8.69 8.69 45.62 3.67
7371 7656 1.137513 GGTGCATCTATTCGCCGTAC 58.862 55.000 0.00 0.00 0.00 3.67
7372 7657 0.747852 TGGTGCATCTATTCGCCGTA 59.252 50.000 0.00 0.00 35.71 4.02
7373 7658 0.810031 GTGGTGCATCTATTCGCCGT 60.810 55.000 0.00 0.00 35.71 5.68
7374 7659 1.821241 CGTGGTGCATCTATTCGCCG 61.821 60.000 0.00 0.00 35.71 6.46
7375 7660 0.810031 ACGTGGTGCATCTATTCGCC 60.810 55.000 0.00 0.00 0.00 5.54
7376 7661 0.577269 GACGTGGTGCATCTATTCGC 59.423 55.000 0.00 0.00 0.00 4.70
7377 7662 0.846401 CGACGTGGTGCATCTATTCG 59.154 55.000 0.00 0.00 0.00 3.34
7378 7663 0.577269 GCGACGTGGTGCATCTATTC 59.423 55.000 0.00 0.00 0.00 1.75
7379 7664 0.810031 GGCGACGTGGTGCATCTATT 60.810 55.000 0.00 0.00 0.00 1.73
7380 7665 1.227263 GGCGACGTGGTGCATCTAT 60.227 57.895 0.00 0.00 0.00 1.98
7381 7666 2.183300 GGCGACGTGGTGCATCTA 59.817 61.111 0.00 0.00 0.00 1.98
7396 7681 2.126580 AACTGCGACGAGTACGGC 60.127 61.111 0.00 0.00 45.02 5.68
7397 7682 1.063951 GTGAACTGCGACGAGTACGG 61.064 60.000 0.00 0.00 44.46 4.02
7398 7683 1.386293 CGTGAACTGCGACGAGTACG 61.386 60.000 0.00 4.00 45.75 3.67
7399 7684 1.063951 CCGTGAACTGCGACGAGTAC 61.064 60.000 0.00 0.00 37.81 2.73
7400 7685 1.208358 CCGTGAACTGCGACGAGTA 59.792 57.895 0.00 0.00 37.81 2.59
7401 7686 2.050351 CCGTGAACTGCGACGAGT 60.050 61.111 0.00 0.00 37.81 4.18
7402 7687 3.470567 GCCGTGAACTGCGACGAG 61.471 66.667 0.00 0.00 37.81 4.18
7406 7691 4.717629 CTCGGCCGTGAACTGCGA 62.718 66.667 27.15 0.17 0.00 5.10
7408 7693 3.414700 CACTCGGCCGTGAACTGC 61.415 66.667 32.11 0.00 37.06 4.40
7409 7694 1.594293 AACACTCGGCCGTGAACTG 60.594 57.895 32.11 21.75 38.27 3.16
7410 7695 1.594293 CAACACTCGGCCGTGAACT 60.594 57.895 32.11 13.13 38.27 3.01
7411 7696 1.828331 GACAACACTCGGCCGTGAAC 61.828 60.000 32.11 14.58 38.27 3.18
7412 7697 1.593209 GACAACACTCGGCCGTGAA 60.593 57.895 32.11 9.75 38.27 3.18
7413 7698 1.174078 TAGACAACACTCGGCCGTGA 61.174 55.000 32.11 10.58 38.27 4.35
7414 7699 0.319211 TTAGACAACACTCGGCCGTG 60.319 55.000 27.15 25.86 40.67 4.94
7415 7700 0.319297 GTTAGACAACACTCGGCCGT 60.319 55.000 27.15 2.93 34.60 5.68
7416 7701 1.342082 CGTTAGACAACACTCGGCCG 61.342 60.000 22.12 22.12 34.05 6.13
7417 7702 0.038892 TCGTTAGACAACACTCGGCC 60.039 55.000 0.00 0.00 34.05 6.13
7418 7703 1.774639 TTCGTTAGACAACACTCGGC 58.225 50.000 0.00 0.00 34.05 5.54
7419 7704 2.921754 GGATTCGTTAGACAACACTCGG 59.078 50.000 0.00 0.00 34.05 4.63
7420 7705 2.921754 GGGATTCGTTAGACAACACTCG 59.078 50.000 0.00 0.00 34.05 4.18
7421 7706 2.921754 CGGGATTCGTTAGACAACACTC 59.078 50.000 0.00 0.00 34.05 3.51
7422 7707 2.955614 CGGGATTCGTTAGACAACACT 58.044 47.619 0.00 0.00 34.05 3.55
7434 7719 2.761392 TATGTACGTCACGGGATTCG 57.239 50.000 0.35 0.00 45.88 3.34
7435 7720 3.772932 TGTTATGTACGTCACGGGATTC 58.227 45.455 0.35 0.00 0.00 2.52
7436 7721 3.872511 TGTTATGTACGTCACGGGATT 57.127 42.857 0.35 0.00 0.00 3.01
7437 7722 5.717078 ATATGTTATGTACGTCACGGGAT 57.283 39.130 0.35 0.00 0.00 3.85
7438 7723 5.518848 AATATGTTATGTACGTCACGGGA 57.481 39.130 0.35 0.00 0.00 5.14
7439 7724 6.477688 AGAAAATATGTTATGTACGTCACGGG 59.522 38.462 0.35 0.00 0.00 5.28
7440 7725 7.459394 AGAAAATATGTTATGTACGTCACGG 57.541 36.000 0.35 0.00 0.00 4.94
7441 7726 8.804743 AGAAGAAAATATGTTATGTACGTCACG 58.195 33.333 0.00 0.00 0.00 4.35
7442 7727 9.901724 CAGAAGAAAATATGTTATGTACGTCAC 57.098 33.333 0.00 0.00 0.00 3.67
7443 7728 9.647797 ACAGAAGAAAATATGTTATGTACGTCA 57.352 29.630 0.00 0.00 35.25 4.35
7468 7753 6.313164 TGGACCAAATGTTTTCGGTTTAAAAC 59.687 34.615 0.00 5.48 45.43 2.43
7469 7754 6.313164 GTGGACCAAATGTTTTCGGTTTAAAA 59.687 34.615 0.00 0.00 0.00 1.52
7470 7755 5.811100 GTGGACCAAATGTTTTCGGTTTAAA 59.189 36.000 0.00 0.00 0.00 1.52
7471 7756 5.127356 AGTGGACCAAATGTTTTCGGTTTAA 59.873 36.000 0.00 0.00 0.00 1.52
7472 7757 4.645588 AGTGGACCAAATGTTTTCGGTTTA 59.354 37.500 0.00 0.00 0.00 2.01
7473 7758 3.449377 AGTGGACCAAATGTTTTCGGTTT 59.551 39.130 0.00 0.00 0.00 3.27
7474 7759 3.028130 AGTGGACCAAATGTTTTCGGTT 58.972 40.909 0.00 0.00 0.00 4.44
7475 7760 2.360801 CAGTGGACCAAATGTTTTCGGT 59.639 45.455 0.00 0.00 0.00 4.69
7476 7761 2.360801 ACAGTGGACCAAATGTTTTCGG 59.639 45.455 7.61 0.00 0.00 4.30
7477 7762 3.708563 ACAGTGGACCAAATGTTTTCG 57.291 42.857 7.61 0.00 0.00 3.46
7478 7763 4.982295 GCTTACAGTGGACCAAATGTTTTC 59.018 41.667 16.53 5.20 0.00 2.29
7479 7764 4.202212 GGCTTACAGTGGACCAAATGTTTT 60.202 41.667 16.53 0.00 0.00 2.43
7480 7765 3.320826 GGCTTACAGTGGACCAAATGTTT 59.679 43.478 16.53 0.00 0.00 2.83
7481 7766 2.890945 GGCTTACAGTGGACCAAATGTT 59.109 45.455 16.53 4.36 0.00 2.71
7482 7767 2.514803 GGCTTACAGTGGACCAAATGT 58.485 47.619 15.81 15.81 0.00 2.71
7483 7768 1.468520 CGGCTTACAGTGGACCAAATG 59.531 52.381 0.00 0.40 0.00 2.32
7484 7769 1.349688 TCGGCTTACAGTGGACCAAAT 59.650 47.619 0.00 0.00 0.00 2.32
7485 7770 0.759959 TCGGCTTACAGTGGACCAAA 59.240 50.000 0.00 0.00 0.00 3.28
7486 7771 0.320374 CTCGGCTTACAGTGGACCAA 59.680 55.000 0.00 0.00 0.00 3.67
7487 7772 0.830444 ACTCGGCTTACAGTGGACCA 60.830 55.000 0.00 0.00 0.00 4.02
7488 7773 0.389948 CACTCGGCTTACAGTGGACC 60.390 60.000 0.00 0.00 37.04 4.46
7489 7774 3.123674 CACTCGGCTTACAGTGGAC 57.876 57.895 0.00 0.00 37.04 4.02
7492 7777 0.670546 CACCCACTCGGCTTACAGTG 60.671 60.000 0.00 0.00 39.90 3.66
7493 7778 0.830444 TCACCCACTCGGCTTACAGT 60.830 55.000 0.00 0.00 33.26 3.55
7494 7779 0.389948 GTCACCCACTCGGCTTACAG 60.390 60.000 0.00 0.00 33.26 2.74
7495 7780 0.830444 AGTCACCCACTCGGCTTACA 60.830 55.000 0.00 0.00 33.26 2.41
7496 7781 0.320697 AAGTCACCCACTCGGCTTAC 59.679 55.000 0.00 0.00 32.30 2.34
7497 7782 1.927487 TAAGTCACCCACTCGGCTTA 58.073 50.000 0.00 0.00 32.30 3.09
7498 7783 1.053424 TTAAGTCACCCACTCGGCTT 58.947 50.000 0.00 0.00 32.30 4.35
7499 7784 1.276622 ATTAAGTCACCCACTCGGCT 58.723 50.000 0.00 0.00 32.30 5.52
7500 7785 2.093869 TGTATTAAGTCACCCACTCGGC 60.094 50.000 0.00 0.00 32.30 5.54
7501 7786 3.194968 AGTGTATTAAGTCACCCACTCGG 59.805 47.826 8.54 0.00 32.30 4.63
7502 7787 4.421948 GAGTGTATTAAGTCACCCACTCG 58.578 47.826 0.00 0.00 39.34 4.18
7503 7788 4.421948 CGAGTGTATTAAGTCACCCACTC 58.578 47.826 0.00 0.00 43.22 3.51
7504 7789 4.451629 CGAGTGTATTAAGTCACCCACT 57.548 45.455 8.54 0.00 36.64 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.