Multiple sequence alignment - TraesCS7B01G046000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G046000 chr7B 100.000 4744 0 0 1 4744 44945904 44941161 0.000000e+00 8761.0
1 TraesCS7B01G046000 chr7D 92.606 3097 131 47 712 3763 92632240 92635283 0.000000e+00 4361.0
2 TraesCS7B01G046000 chr7D 89.365 630 44 11 3863 4473 92635311 92635936 0.000000e+00 771.0
3 TraesCS7B01G046000 chr7D 87.032 347 40 2 1 346 92630202 92630544 2.070000e-103 387.0
4 TraesCS7B01G046000 chr7D 85.124 242 33 1 388 626 92630547 92630788 1.320000e-60 244.0
5 TraesCS7B01G046000 chr7D 87.179 117 9 6 4535 4648 191814037 191813924 1.390000e-25 128.0
6 TraesCS7B01G046000 chr7A 94.621 1952 83 12 1520 3454 94790830 94788884 0.000000e+00 3003.0
7 TraesCS7B01G046000 chr7A 87.364 918 67 23 3854 4744 94787187 94786292 0.000000e+00 1007.0
8 TraesCS7B01G046000 chr7A 92.332 639 36 7 846 1474 94791455 94790820 0.000000e+00 896.0
9 TraesCS7B01G046000 chr7A 94.257 296 17 0 3468 3763 94787478 94787183 2.010000e-123 453.0
10 TraesCS7B01G046000 chr7A 95.385 65 3 0 712 776 94802259 94802195 2.340000e-18 104.0
11 TraesCS7B01G046000 chr4A 91.908 519 36 2 974 1492 2949941 2949429 0.000000e+00 721.0
12 TraesCS7B01G046000 chr1B 94.444 108 6 0 3758 3865 526192413 526192306 2.940000e-37 167.0
13 TraesCS7B01G046000 chr1B 92.035 113 7 2 3748 3859 233786792 233786903 1.770000e-34 158.0
14 TraesCS7B01G046000 chr3B 95.192 104 5 0 3753 3856 251651150 251651047 1.060000e-36 165.0
15 TraesCS7B01G046000 chr2B 95.192 104 5 0 3754 3857 403101604 403101707 1.060000e-36 165.0
16 TraesCS7B01G046000 chr2B 96.040 101 4 0 3759 3859 584129499 584129399 1.060000e-36 165.0
17 TraesCS7B01G046000 chr2B 97.619 42 0 1 4579 4619 110413108 110413149 2.370000e-08 71.3
18 TraesCS7B01G046000 chr3D 95.146 103 5 0 3757 3859 564146160 564146262 3.800000e-36 163.0
19 TraesCS7B01G046000 chr2A 96.907 97 3 0 3757 3853 92494423 92494519 3.800000e-36 163.0
20 TraesCS7B01G046000 chr1D 95.146 103 5 0 3759 3861 315817004 315816902 3.800000e-36 163.0
21 TraesCS7B01G046000 chr1D 88.991 109 8 2 4539 4646 367839551 367839446 1.070000e-26 132.0
22 TraesCS7B01G046000 chr4B 92.793 111 8 0 3760 3870 1770118 1770228 1.370000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G046000 chr7B 44941161 44945904 4743 True 8761.00 8761 100.00000 1 4744 1 chr7B.!!$R1 4743
1 TraesCS7B01G046000 chr7D 92630202 92635936 5734 False 1440.75 4361 88.53175 1 4473 4 chr7D.!!$F1 4472
2 TraesCS7B01G046000 chr7A 94786292 94791455 5163 True 1339.75 3003 92.14350 846 4744 4 chr7A.!!$R2 3898
3 TraesCS7B01G046000 chr4A 2949429 2949941 512 True 721.00 721 91.90800 974 1492 1 chr4A.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 432 0.038166 ATCCCGCAACAATGGTCACT 59.962 50.000 0.00 0.0 0.00 3.41 F
527 529 0.108567 GCCGTTGGTTTTGGTTGTGT 60.109 50.000 0.00 0.0 0.00 3.72 F
1579 2983 0.321210 TGGTGCGGATCACGTGAATT 60.321 50.000 24.13 6.9 46.56 2.17 F
2110 3536 1.332375 TCAGTTTTGGTGTAGCAACGC 59.668 47.619 0.00 0.0 35.27 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1561 2965 0.096976 CAATTCACGTGATCCGCACC 59.903 55.0 20.8 0.0 44.85 5.01 R
1725 3144 0.830648 TCTATGCCCTGACCTTTCCG 59.169 55.0 0.0 0.0 0.00 4.30 R
2784 4219 0.850100 TCAAGAACCCAGCCAAAGGA 59.150 50.0 0.0 0.0 0.00 3.36 R
4056 6906 0.249322 ACACCTCACACTCGTTTCCG 60.249 55.0 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.565305 GCACAAACGATTTGGTGCAA 58.435 45.000 12.15 0.00 44.81 4.08
42 43 0.532640 CAACATCGGCGATGATCCCA 60.533 55.000 45.33 10.16 42.09 4.37
43 44 0.532862 AACATCGGCGATGATCCCAC 60.533 55.000 45.33 0.00 42.09 4.61
44 45 1.069596 CATCGGCGATGATCCCACA 59.930 57.895 39.06 1.47 42.09 4.17
45 46 0.532640 CATCGGCGATGATCCCACAA 60.533 55.000 39.06 0.87 42.09 3.33
47 48 2.525248 CGGCGATGATCCCACAACG 61.525 63.158 0.00 0.00 38.66 4.10
48 49 1.449601 GGCGATGATCCCACAACGT 60.450 57.895 0.00 0.00 38.10 3.99
49 50 1.429148 GGCGATGATCCCACAACGTC 61.429 60.000 0.00 0.00 38.10 4.34
50 51 0.460284 GCGATGATCCCACAACGTCT 60.460 55.000 0.00 0.00 38.10 4.18
51 52 1.280982 CGATGATCCCACAACGTCTG 58.719 55.000 0.00 0.00 32.88 3.51
63 64 0.249699 AACGTCTGACCGCAACATCA 60.250 50.000 1.55 0.00 0.00 3.07
73 74 3.231222 GCAACATCAGCGATGCTTC 57.769 52.632 15.41 0.00 43.15 3.86
93 94 1.877680 CGATGACTTCCTGCAACACCA 60.878 52.381 0.00 0.00 0.00 4.17
95 96 0.819259 TGACTTCCTGCAACACCAGC 60.819 55.000 0.00 0.00 0.00 4.85
100 101 2.177531 CTGCAACACCAGCGATGC 59.822 61.111 0.00 0.00 39.22 3.91
127 128 2.591753 CCCCCGCATCACATGTCT 59.408 61.111 0.00 0.00 0.00 3.41
158 160 1.152756 ACAACGCTTTGGCTCCCTT 60.153 52.632 7.92 0.00 37.00 3.95
168 170 2.274760 GCTCCCTTCCTGCAGCAT 59.725 61.111 8.66 0.00 0.00 3.79
172 174 1.304713 CCCTTCCTGCAGCATTGGT 60.305 57.895 8.66 0.00 0.00 3.67
192 194 0.179156 GATGCTTCACAACATGGGCG 60.179 55.000 0.00 0.00 32.56 6.13
210 212 0.460284 CGATTCTCACAACCCTCCCG 60.460 60.000 0.00 0.00 0.00 5.14
216 218 4.643387 ACAACCCTCCCGCAGCAC 62.643 66.667 0.00 0.00 0.00 4.40
240 242 1.699083 TGATGCTTCCTCAACACAGGA 59.301 47.619 0.00 0.00 41.16 3.86
256 258 3.090504 GGAGAACTCCCCCAAGTCT 57.909 57.895 9.50 0.00 43.94 3.24
257 259 2.249309 GGAGAACTCCCCCAAGTCTA 57.751 55.000 9.50 0.00 43.94 2.59
258 260 2.765502 GGAGAACTCCCCCAAGTCTAT 58.234 52.381 9.50 0.00 43.94 1.98
264 266 0.758734 TCCCCCAAGTCTATGATGCG 59.241 55.000 0.00 0.00 0.00 4.73
296 298 2.985847 GCTTTTGCGAGCCCCACT 60.986 61.111 0.00 0.00 36.66 4.00
297 299 2.982744 GCTTTTGCGAGCCCCACTC 61.983 63.158 0.00 0.00 42.47 3.51
346 348 1.645455 GACTTGCATCATCGCGCAT 59.355 52.632 8.75 0.00 38.10 4.73
349 351 0.248336 CTTGCATCATCGCGCATGTT 60.248 50.000 8.75 2.98 38.10 2.71
350 352 1.003652 CTTGCATCATCGCGCATGTTA 60.004 47.619 8.75 0.00 38.10 2.41
351 353 0.304401 TGCATCATCGCGCATGTTAC 59.696 50.000 8.75 1.67 33.66 2.50
352 354 0.304401 GCATCATCGCGCATGTTACA 59.696 50.000 8.75 0.00 33.66 2.41
353 355 1.658373 GCATCATCGCGCATGTTACAG 60.658 52.381 8.75 2.73 33.66 2.74
354 356 1.860326 CATCATCGCGCATGTTACAGA 59.140 47.619 8.75 0.00 33.66 3.41
355 357 1.559831 TCATCGCGCATGTTACAGAG 58.440 50.000 8.75 0.00 33.66 3.35
356 358 0.042708 CATCGCGCATGTTACAGAGC 60.043 55.000 8.75 3.01 0.00 4.09
357 359 0.179100 ATCGCGCATGTTACAGAGCT 60.179 50.000 8.75 0.00 0.00 4.09
358 360 0.802222 TCGCGCATGTTACAGAGCTC 60.802 55.000 8.75 5.27 0.00 4.09
359 361 0.803768 CGCGCATGTTACAGAGCTCT 60.804 55.000 11.45 11.45 0.00 4.09
360 362 1.363744 GCGCATGTTACAGAGCTCTT 58.636 50.000 15.27 8.53 0.00 2.85
361 363 1.325943 GCGCATGTTACAGAGCTCTTC 59.674 52.381 15.27 5.80 0.00 2.87
362 364 1.585668 CGCATGTTACAGAGCTCTTCG 59.414 52.381 15.27 6.50 0.00 3.79
363 365 1.929836 GCATGTTACAGAGCTCTTCGG 59.070 52.381 15.27 5.67 0.00 4.30
364 366 1.929836 CATGTTACAGAGCTCTTCGGC 59.070 52.381 15.27 5.85 0.00 5.54
365 367 1.257743 TGTTACAGAGCTCTTCGGCT 58.742 50.000 15.27 0.00 46.11 5.52
366 368 1.618837 TGTTACAGAGCTCTTCGGCTT 59.381 47.619 15.27 0.00 43.20 4.35
367 369 1.996191 GTTACAGAGCTCTTCGGCTTG 59.004 52.381 15.27 4.24 43.20 4.01
368 370 1.257743 TACAGAGCTCTTCGGCTTGT 58.742 50.000 15.27 10.61 43.20 3.16
369 371 1.257743 ACAGAGCTCTTCGGCTTGTA 58.742 50.000 15.27 0.00 43.20 2.41
370 372 1.203523 ACAGAGCTCTTCGGCTTGTAG 59.796 52.381 15.27 0.73 43.20 2.74
371 373 0.174617 AGAGCTCTTCGGCTTGTAGC 59.825 55.000 11.45 0.00 43.20 3.58
372 374 1.142778 GAGCTCTTCGGCTTGTAGCG 61.143 60.000 6.43 0.00 43.62 4.26
373 375 1.446272 GCTCTTCGGCTTGTAGCGT 60.446 57.895 0.00 0.00 43.62 5.07
374 376 1.414527 GCTCTTCGGCTTGTAGCGTC 61.415 60.000 0.00 0.00 43.62 5.19
375 377 1.134530 CTCTTCGGCTTGTAGCGTCG 61.135 60.000 0.00 0.00 43.62 5.12
376 378 1.443872 CTTCGGCTTGTAGCGTCGT 60.444 57.895 0.00 0.00 43.62 4.34
377 379 1.007038 TTCGGCTTGTAGCGTCGTT 60.007 52.632 0.00 0.00 43.62 3.85
378 380 1.279527 TTCGGCTTGTAGCGTCGTTG 61.280 55.000 0.00 0.00 43.62 4.10
379 381 2.019951 CGGCTTGTAGCGTCGTTGT 61.020 57.895 0.00 0.00 43.62 3.32
380 382 1.779683 GGCTTGTAGCGTCGTTGTC 59.220 57.895 0.00 0.00 43.62 3.18
381 383 0.666577 GGCTTGTAGCGTCGTTGTCT 60.667 55.000 0.00 0.00 43.62 3.41
382 384 0.708918 GCTTGTAGCGTCGTTGTCTC 59.291 55.000 0.00 0.00 0.00 3.36
383 385 0.975544 CTTGTAGCGTCGTTGTCTCG 59.024 55.000 0.00 0.00 0.00 4.04
388 390 4.832767 CGTCGTTGTCTCGCACTA 57.167 55.556 0.00 0.00 0.00 2.74
389 391 2.626648 CGTCGTTGTCTCGCACTAG 58.373 57.895 0.00 0.00 0.00 2.57
390 392 0.165295 CGTCGTTGTCTCGCACTAGA 59.835 55.000 0.00 0.00 0.00 2.43
391 393 1.604396 GTCGTTGTCTCGCACTAGAC 58.396 55.000 0.00 4.35 45.10 2.59
408 410 3.586470 AGACGATGTCTAGGATGGTCT 57.414 47.619 11.84 11.84 41.51 3.85
409 411 3.482436 AGACGATGTCTAGGATGGTCTC 58.518 50.000 11.84 0.00 41.51 3.36
422 424 1.079405 GGTCTCGATCCCGCAACAA 60.079 57.895 0.00 0.00 35.37 2.83
430 432 0.038166 ATCCCGCAACAATGGTCACT 59.962 50.000 0.00 0.00 0.00 3.41
431 433 0.888736 TCCCGCAACAATGGTCACTG 60.889 55.000 0.00 0.00 0.00 3.66
443 445 1.340502 TGGTCACTGTCCTTTGCAACA 60.341 47.619 0.00 0.00 0.00 3.33
450 452 1.228398 TCCTTTGCAACATCGGCCA 60.228 52.632 2.24 0.00 0.00 5.36
506 508 0.523072 TTTGAGAAGCGGATGCAAGC 59.477 50.000 0.00 0.00 46.23 4.01
513 515 3.434319 CGGATGCAAGCTGCCGTT 61.434 61.111 14.77 0.00 44.23 4.44
515 517 2.180017 GATGCAAGCTGCCGTTGG 59.820 61.111 0.00 0.00 44.23 3.77
525 527 0.174617 CTGCCGTTGGTTTTGGTTGT 59.825 50.000 0.00 0.00 0.00 3.32
527 529 0.108567 GCCGTTGGTTTTGGTTGTGT 60.109 50.000 0.00 0.00 0.00 3.72
539 541 5.699097 TTTGGTTGTGTATTTGGTAGAGC 57.301 39.130 0.00 0.00 0.00 4.09
542 544 3.332034 GTTGTGTATTTGGTAGAGCGGT 58.668 45.455 0.00 0.00 0.00 5.68
545 547 2.928116 GTGTATTTGGTAGAGCGGTGTC 59.072 50.000 0.00 0.00 0.00 3.67
546 548 2.093869 TGTATTTGGTAGAGCGGTGTCC 60.094 50.000 0.00 0.00 0.00 4.02
547 549 0.981183 ATTTGGTAGAGCGGTGTCCA 59.019 50.000 0.00 0.00 0.00 4.02
550 552 0.902984 TGGTAGAGCGGTGTCCACAT 60.903 55.000 0.00 0.00 0.00 3.21
559 561 2.705730 CGGTGTCCACATTGGTCATTA 58.294 47.619 0.00 0.00 37.84 1.90
572 574 1.134491 GGTCATTAAGGAGGTGGTCGG 60.134 57.143 0.00 0.00 0.00 4.79
602 604 2.485795 GGAGCGGTGCGAGAGAGAT 61.486 63.158 0.00 0.00 0.00 2.75
603 605 1.008995 GAGCGGTGCGAGAGAGATC 60.009 63.158 0.00 0.00 0.00 2.75
606 608 1.278337 CGGTGCGAGAGAGATCGAG 59.722 63.158 0.00 0.00 45.56 4.04
613 618 1.593551 CGAGAGAGATCGAGCGTTCAC 60.594 57.143 9.51 3.35 45.56 3.18
620 625 4.052229 CGAGCGTTCACGGGTCCT 62.052 66.667 0.00 0.00 40.23 3.85
626 631 4.585216 TTCACGGGTCCTGGGGGT 62.585 66.667 0.00 0.00 0.00 4.95
628 633 2.366435 CACGGGTCCTGGGGGTAT 60.366 66.667 1.89 0.00 0.00 2.73
629 634 2.366435 ACGGGTCCTGGGGGTATG 60.366 66.667 1.89 0.00 0.00 2.39
630 635 3.873812 CGGGTCCTGGGGGTATGC 61.874 72.222 0.00 0.00 0.00 3.14
634 1971 1.071471 GTCCTGGGGGTATGCATCG 59.929 63.158 0.19 0.00 0.00 3.84
672 2009 1.504900 GGGGCGAACGGAAATCAAC 59.495 57.895 0.00 0.00 0.00 3.18
681 2018 1.373590 CGGAAATCAACCGGGCGATT 61.374 55.000 6.32 10.73 45.65 3.34
685 2022 1.373590 AATCAACCGGGCGATTTCCG 61.374 55.000 6.32 0.00 46.43 4.30
693 2030 0.958876 GGGCGATTTCCGGTGTTTCT 60.959 55.000 0.00 0.00 39.04 2.52
701 2038 5.793457 CGATTTCCGGTGTTTCTCAAATAAC 59.207 40.000 0.00 0.00 33.91 1.89
767 2138 7.431084 GCAAATGAAAACACTCTTACGAAGAAA 59.569 33.333 0.00 0.00 37.02 2.52
794 2165 5.914033 TCTTTTGTCCGAAAAAGAGAGAGA 58.086 37.500 13.31 0.00 46.26 3.10
795 2166 5.986135 TCTTTTGTCCGAAAAAGAGAGAGAG 59.014 40.000 13.31 0.00 46.26 3.20
796 2167 5.531122 TTTGTCCGAAAAAGAGAGAGAGA 57.469 39.130 0.00 0.00 0.00 3.10
797 2168 4.775058 TGTCCGAAAAAGAGAGAGAGAG 57.225 45.455 0.00 0.00 0.00 3.20
798 2169 4.399219 TGTCCGAAAAAGAGAGAGAGAGA 58.601 43.478 0.00 0.00 0.00 3.10
799 2170 4.457603 TGTCCGAAAAAGAGAGAGAGAGAG 59.542 45.833 0.00 0.00 0.00 3.20
800 2171 4.013728 TCCGAAAAAGAGAGAGAGAGAGG 58.986 47.826 0.00 0.00 0.00 3.69
801 2172 3.130340 CCGAAAAAGAGAGAGAGAGAGGG 59.870 52.174 0.00 0.00 0.00 4.30
802 2173 4.013728 CGAAAAAGAGAGAGAGAGAGGGA 58.986 47.826 0.00 0.00 0.00 4.20
803 2174 4.096382 CGAAAAAGAGAGAGAGAGAGGGAG 59.904 50.000 0.00 0.00 0.00 4.30
804 2175 3.669939 AAAGAGAGAGAGAGAGGGAGG 57.330 52.381 0.00 0.00 0.00 4.30
805 2176 1.522900 AGAGAGAGAGAGAGGGAGGG 58.477 60.000 0.00 0.00 0.00 4.30
806 2177 1.010793 AGAGAGAGAGAGAGGGAGGGA 59.989 57.143 0.00 0.00 0.00 4.20
807 2178 1.421646 GAGAGAGAGAGAGGGAGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
808 2179 1.010793 AGAGAGAGAGAGGGAGGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
809 2180 1.421646 GAGAGAGAGAGGGAGGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
810 2181 1.010793 AGAGAGAGAGGGAGGGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
811 2182 1.421646 GAGAGAGAGGGAGGGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
812 2183 1.010793 AGAGAGAGGGAGGGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
813 2184 1.421646 GAGAGAGGGAGGGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
814 2185 0.478507 GAGAGGGAGGGAGAGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
815 2186 0.998945 AGAGGGAGGGAGAGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
816 2187 0.996762 GAGGGAGGGAGAGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
817 2188 0.998945 AGGGAGGGAGAGAGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
818 2189 0.996762 GGGAGGGAGAGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
819 2190 0.478507 GGAGGGAGAGAGAGGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
832 2203 4.344104 AGAGGGAGAGAGAGAAGAAACTG 58.656 47.826 0.00 0.00 0.00 3.16
990 2378 2.606519 CTCCCAACCTCCACCCGA 60.607 66.667 0.00 0.00 0.00 5.14
1152 2543 4.824515 ACCGCCTCCTCCTCCTCG 62.825 72.222 0.00 0.00 0.00 4.63
1427 2827 2.031163 AACACTCTGCGCCCAGTC 59.969 61.111 4.18 0.00 40.09 3.51
1453 2853 3.571571 GGTTAGGTGAAACGGCAATTTC 58.428 45.455 5.24 5.24 38.12 2.17
1474 2875 3.008157 TCATTTTACCCTGTTGCTCGGTA 59.992 43.478 0.00 0.00 0.00 4.02
1550 2954 4.316645 GTTGGGTAGAGTTCTGGAGAAAC 58.683 47.826 0.00 0.00 35.58 2.78
1561 2965 1.281656 GGAGAAACGCGGGTTGTTG 59.718 57.895 19.33 0.00 36.25 3.33
1579 2983 0.321210 TGGTGCGGATCACGTGAATT 60.321 50.000 24.13 6.90 46.56 2.17
1644 3051 5.120399 AGACATTGGTTCGTGTTCAGTTTA 58.880 37.500 0.00 0.00 0.00 2.01
1670 3081 5.140177 GCTCAGTTTGAGTTTCATAACACG 58.860 41.667 7.80 0.00 45.94 4.49
1684 3102 1.373590 AACACGAACACAGCACCACC 61.374 55.000 0.00 0.00 0.00 4.61
1709 3128 4.350368 ACAAATTTGATGTCCCAAACCC 57.650 40.909 24.64 0.00 38.65 4.11
1911 3335 2.505819 CAGCTAGGATGGGTAAACAGGT 59.494 50.000 0.00 0.00 0.00 4.00
2003 3429 6.595716 CAGCTGCTAATAAACCTTTAGTCAGT 59.404 38.462 0.00 0.00 35.54 3.41
2004 3430 7.764443 CAGCTGCTAATAAACCTTTAGTCAGTA 59.236 37.037 0.00 0.00 35.54 2.74
2005 3431 7.764901 AGCTGCTAATAAACCTTTAGTCAGTAC 59.235 37.037 0.00 0.00 35.54 2.73
2046 3472 5.282055 TGATGACAGAGCCTTATGGTAAG 57.718 43.478 0.00 0.00 35.27 2.34
2064 3490 2.332063 AGGTGGAACTGTCACTGTTG 57.668 50.000 4.56 0.00 36.74 3.33
2109 3535 3.181505 TGTTCAGTTTTGGTGTAGCAACG 60.182 43.478 0.00 0.00 0.00 4.10
2110 3536 1.332375 TCAGTTTTGGTGTAGCAACGC 59.668 47.619 0.00 0.00 35.27 4.84
2175 3603 1.547372 TCACCGAGCCTTAGTACCAAC 59.453 52.381 0.00 0.00 0.00 3.77
2180 3608 2.696506 GAGCCTTAGTACCAACACCAC 58.303 52.381 0.00 0.00 0.00 4.16
2391 3825 5.525378 AGAAGCATACATCAATCTTCGGAAC 59.475 40.000 0.00 0.00 38.44 3.62
2394 3828 4.024556 GCATACATCAATCTTCGGAACCAG 60.025 45.833 0.00 0.00 0.00 4.00
2756 4191 6.228273 ACATGGATGAATATTTCGTTAGCG 57.772 37.500 0.00 0.00 39.92 4.26
2784 4219 5.934781 AGAAAGATCCCGAAGCAGATAAAT 58.065 37.500 0.00 0.00 0.00 1.40
2786 4221 4.278975 AGATCCCGAAGCAGATAAATCC 57.721 45.455 0.00 0.00 0.00 3.01
2817 4252 4.321974 GGGTTCTTGAAATGTAAAGGCCTG 60.322 45.833 5.69 0.00 0.00 4.85
3034 4469 2.610374 TGACTGTTTGGTTTACGAGCAC 59.390 45.455 0.00 0.00 35.04 4.40
3126 4561 1.207811 CCATGGGACCTTGAAATTGGC 59.792 52.381 2.85 0.00 0.00 4.52
3341 4776 4.340381 CCTCCTCCTAGAAATTTGCCATTG 59.660 45.833 0.00 0.00 0.00 2.82
3348 4783 0.975887 AAATTTGCCATTGCCTCCGT 59.024 45.000 0.00 0.00 36.33 4.69
3382 4817 0.615331 AGTGTGGTATGGTCCAGCTG 59.385 55.000 6.78 6.78 38.23 4.24
3384 4819 1.553248 GTGTGGTATGGTCCAGCTGTA 59.447 52.381 13.81 0.00 38.23 2.74
3510 6337 1.086696 CCCGCACTGTCTTGGTTATG 58.913 55.000 0.00 0.00 0.00 1.90
3568 6395 8.179615 TCAGTACTCAGTACACATTACATAACG 58.820 37.037 17.46 0.00 41.03 3.18
3570 6397 5.657474 ACTCAGTACACATTACATAACGGG 58.343 41.667 0.00 0.00 0.00 5.28
3576 6403 2.869801 CACATTACATAACGGGCGATGT 59.130 45.455 0.00 0.00 39.57 3.06
3645 6472 6.971602 TGTTCTTGGAATATTTGTTAACGCA 58.028 32.000 0.26 0.00 0.00 5.24
3648 6475 9.006215 GTTCTTGGAATATTTGTTAACGCATAC 57.994 33.333 0.26 0.00 0.00 2.39
3763 6590 6.868622 AGTGACCTTGTACAATCTGATACTC 58.131 40.000 9.13 0.00 0.00 2.59
3764 6591 6.043411 GTGACCTTGTACAATCTGATACTCC 58.957 44.000 9.13 0.00 0.00 3.85
3765 6592 5.128827 TGACCTTGTACAATCTGATACTCCC 59.871 44.000 9.13 0.00 0.00 4.30
3766 6593 5.281314 ACCTTGTACAATCTGATACTCCCT 58.719 41.667 9.13 0.00 0.00 4.20
3767 6594 5.364157 ACCTTGTACAATCTGATACTCCCTC 59.636 44.000 9.13 0.00 0.00 4.30
3768 6595 5.221541 CCTTGTACAATCTGATACTCCCTCC 60.222 48.000 9.13 0.00 0.00 4.30
3769 6596 3.889538 TGTACAATCTGATACTCCCTCCG 59.110 47.826 0.00 0.00 0.00 4.63
3770 6597 3.033659 ACAATCTGATACTCCCTCCGT 57.966 47.619 0.00 0.00 0.00 4.69
3771 6598 2.959707 ACAATCTGATACTCCCTCCGTC 59.040 50.000 0.00 0.00 0.00 4.79
3772 6599 2.296073 ATCTGATACTCCCTCCGTCC 57.704 55.000 0.00 0.00 0.00 4.79
3773 6600 0.185416 TCTGATACTCCCTCCGTCCC 59.815 60.000 0.00 0.00 0.00 4.46
3774 6601 0.106167 CTGATACTCCCTCCGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
3775 6602 0.337082 TGATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
3776 6603 1.273381 TGATACTCCCTCCGTCCCAAA 60.273 52.381 0.00 0.00 0.00 3.28
3777 6604 1.835531 GATACTCCCTCCGTCCCAAAA 59.164 52.381 0.00 0.00 0.00 2.44
3778 6605 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3779 6606 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3780 6607 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3781 6608 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3782 6609 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3783 6610 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3784 6611 1.743394 CCTCCGTCCCAAAATAAGTGC 59.257 52.381 0.00 0.00 0.00 4.40
3785 6612 1.743394 CTCCGTCCCAAAATAAGTGCC 59.257 52.381 0.00 0.00 0.00 5.01
3786 6613 1.353022 TCCGTCCCAAAATAAGTGCCT 59.647 47.619 0.00 0.00 0.00 4.75
3787 6614 1.743394 CCGTCCCAAAATAAGTGCCTC 59.257 52.381 0.00 0.00 0.00 4.70
3788 6615 2.432444 CGTCCCAAAATAAGTGCCTCA 58.568 47.619 0.00 0.00 0.00 3.86
3789 6616 2.817258 CGTCCCAAAATAAGTGCCTCAA 59.183 45.455 0.00 0.00 0.00 3.02
3790 6617 3.365969 CGTCCCAAAATAAGTGCCTCAAC 60.366 47.826 0.00 0.00 0.00 3.18
3791 6618 3.826729 GTCCCAAAATAAGTGCCTCAACT 59.173 43.478 0.00 0.00 0.00 3.16
3792 6619 4.280929 GTCCCAAAATAAGTGCCTCAACTT 59.719 41.667 0.00 0.00 42.89 2.66
3793 6620 4.898861 TCCCAAAATAAGTGCCTCAACTTT 59.101 37.500 0.00 0.00 40.77 2.66
3794 6621 4.990426 CCCAAAATAAGTGCCTCAACTTTG 59.010 41.667 0.00 0.00 40.77 2.77
3795 6622 5.453198 CCCAAAATAAGTGCCTCAACTTTGT 60.453 40.000 0.00 0.00 40.77 2.83
3796 6623 6.239176 CCCAAAATAAGTGCCTCAACTTTGTA 60.239 38.462 0.00 0.00 40.77 2.41
3797 6624 6.640907 CCAAAATAAGTGCCTCAACTTTGTAC 59.359 38.462 0.00 0.00 40.77 2.90
3798 6625 5.959618 AATAAGTGCCTCAACTTTGTACC 57.040 39.130 0.00 0.00 40.77 3.34
3799 6626 3.290948 AAGTGCCTCAACTTTGTACCA 57.709 42.857 0.00 0.00 37.05 3.25
3800 6627 2.851195 AGTGCCTCAACTTTGTACCAG 58.149 47.619 0.00 0.00 0.00 4.00
3801 6628 1.266989 GTGCCTCAACTTTGTACCAGC 59.733 52.381 0.00 0.00 0.00 4.85
3802 6629 1.142870 TGCCTCAACTTTGTACCAGCT 59.857 47.619 0.00 0.00 0.00 4.24
3803 6630 1.807142 GCCTCAACTTTGTACCAGCTC 59.193 52.381 0.00 0.00 0.00 4.09
3804 6631 2.551071 GCCTCAACTTTGTACCAGCTCT 60.551 50.000 0.00 0.00 0.00 4.09
3805 6632 3.306780 GCCTCAACTTTGTACCAGCTCTA 60.307 47.826 0.00 0.00 0.00 2.43
3806 6633 4.499183 CCTCAACTTTGTACCAGCTCTAG 58.501 47.826 0.00 0.00 0.00 2.43
3807 6634 4.021016 CCTCAACTTTGTACCAGCTCTAGT 60.021 45.833 0.00 0.00 0.00 2.57
3808 6635 5.185249 CCTCAACTTTGTACCAGCTCTAGTA 59.815 44.000 0.00 0.00 0.00 1.82
3809 6636 6.022163 TCAACTTTGTACCAGCTCTAGTAC 57.978 41.667 10.08 10.08 39.44 2.73
3810 6637 5.537295 TCAACTTTGTACCAGCTCTAGTACA 59.463 40.000 14.08 14.08 45.29 2.90
3817 6644 6.765403 TGTACCAGCTCTAGTACAAATTTGT 58.235 36.000 25.99 25.99 44.32 2.83
3818 6645 7.898918 TGTACCAGCTCTAGTACAAATTTGTA 58.101 34.615 23.91 23.91 44.32 2.41
3832 6659 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
3833 6660 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
3834 6661 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
3835 6662 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
3836 6663 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
3837 6664 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
3838 6665 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
3839 6666 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
3840 6667 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
3841 6668 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
3842 6669 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
3843 6670 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
3844 6671 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
3845 6672 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
3846 6673 4.518970 GCTCAAGACACTTATTTTGGGACA 59.481 41.667 0.00 0.00 0.00 4.02
3847 6674 5.335191 GCTCAAGACACTTATTTTGGGACAG 60.335 44.000 0.00 0.00 42.39 3.51
3848 6675 5.935945 TCAAGACACTTATTTTGGGACAGA 58.064 37.500 0.00 0.00 42.39 3.41
3849 6676 5.997746 TCAAGACACTTATTTTGGGACAGAG 59.002 40.000 0.00 0.00 42.39 3.35
3850 6677 4.911390 AGACACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
3851 6678 4.010349 GACACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
3852 6679 3.655777 ACACTTATTTTGGGACAGAGGGA 59.344 43.478 0.00 0.00 42.39 4.20
3853 6680 4.105697 ACACTTATTTTGGGACAGAGGGAA 59.894 41.667 0.00 0.00 42.39 3.97
3854 6681 5.222337 ACACTTATTTTGGGACAGAGGGAAT 60.222 40.000 0.00 0.00 42.39 3.01
3855 6682 6.011981 ACACTTATTTTGGGACAGAGGGAATA 60.012 38.462 0.00 0.00 42.39 1.75
3856 6683 6.318900 CACTTATTTTGGGACAGAGGGAATAC 59.681 42.308 0.00 0.00 42.39 1.89
3857 6684 6.217693 ACTTATTTTGGGACAGAGGGAATACT 59.782 38.462 0.00 0.00 42.39 2.12
3876 6726 4.385358 ACTTGTCAAGCCGATTTTGTTT 57.615 36.364 12.66 0.00 0.00 2.83
3918 6768 5.661458 CTTGGATAAGTGGTTCATACGAGT 58.339 41.667 0.00 0.00 0.00 4.18
3952 6802 2.263077 CTGACTCCAAGCGTGTGTATC 58.737 52.381 0.00 0.00 0.00 2.24
4037 6887 9.961265 TTAGTTACAGTCACACATATAGTATGC 57.039 33.333 0.00 0.00 0.00 3.14
4062 6912 7.254692 GCCTTAGGTGAGAATTATAACGGAAAC 60.255 40.741 0.00 0.00 0.00 2.78
4080 6930 0.535335 ACGAGTGTGAGGTGTGTTGT 59.465 50.000 0.00 0.00 0.00 3.32
4087 6937 1.599542 GTGAGGTGTGTTGTGCTCTTC 59.400 52.381 0.00 0.00 0.00 2.87
4096 6946 5.466728 GTGTGTTGTGCTCTTCTTCTTGATA 59.533 40.000 0.00 0.00 0.00 2.15
4130 6980 3.126001 TGTGAGTTGTGACTTCATCCC 57.874 47.619 0.00 0.00 35.88 3.85
4146 6996 1.056660 TCCCGAGTCCTTTCTGCTTT 58.943 50.000 0.00 0.00 0.00 3.51
4243 7093 3.965292 AGCTGAAATGCATGAATCGAG 57.035 42.857 0.00 2.03 34.99 4.04
4244 7094 3.276857 AGCTGAAATGCATGAATCGAGT 58.723 40.909 0.00 0.00 34.99 4.18
4245 7095 4.445453 AGCTGAAATGCATGAATCGAGTA 58.555 39.130 0.00 0.00 34.99 2.59
4246 7096 5.061853 AGCTGAAATGCATGAATCGAGTAT 58.938 37.500 0.00 0.00 34.99 2.12
4248 7098 5.850128 GCTGAAATGCATGAATCGAGTATTC 59.150 40.000 0.00 0.00 43.77 1.75
4263 7115 6.863275 TCGAGTATTCAGCTTGATGAGTAAA 58.137 36.000 0.00 0.00 0.00 2.01
4264 7116 7.492524 TCGAGTATTCAGCTTGATGAGTAAAT 58.507 34.615 0.00 0.00 0.00 1.40
4265 7117 8.630037 TCGAGTATTCAGCTTGATGAGTAAATA 58.370 33.333 0.00 0.00 0.00 1.40
4266 7118 9.416794 CGAGTATTCAGCTTGATGAGTAAATAT 57.583 33.333 0.00 0.00 0.00 1.28
4271 7123 9.624373 ATTCAGCTTGATGAGTAAATATGACTT 57.376 29.630 0.00 0.00 0.00 3.01
4298 7150 6.645003 GGTTGTATAAAAAGAAGTTGCCCTTG 59.355 38.462 0.00 0.00 32.03 3.61
4352 7204 6.893958 AGCTTACACTAATGATCTTTGTCG 57.106 37.500 4.17 0.00 0.00 4.35
4367 7222 6.199937 TCTTTGTCGTCCTACTTGGTATAC 57.800 41.667 0.00 0.00 37.07 1.47
4372 7227 7.268199 TGTCGTCCTACTTGGTATACATTAG 57.732 40.000 5.01 1.26 37.07 1.73
4375 7230 5.566230 CGTCCTACTTGGTATACATTAGGCC 60.566 48.000 5.01 0.00 36.11 5.19
4388 7243 5.700402 ACATTAGGCCTAATCACTTCACT 57.300 39.130 31.28 9.20 33.79 3.41
4390 7245 5.882557 ACATTAGGCCTAATCACTTCACTTG 59.117 40.000 31.28 20.76 33.79 3.16
4409 7264 5.049828 ACTTGCACAAAGGCTCATTTTAAC 58.950 37.500 0.00 0.00 40.51 2.01
4418 7273 3.084786 GGCTCATTTTAACCAGACTGCT 58.915 45.455 0.00 0.00 0.00 4.24
4448 7316 7.704472 GTCAACAACATAAATCACACCTTGAAA 59.296 33.333 0.00 0.00 37.92 2.69
4449 7317 7.704472 TCAACAACATAAATCACACCTTGAAAC 59.296 33.333 0.00 0.00 37.92 2.78
4450 7318 7.106439 ACAACATAAATCACACCTTGAAACA 57.894 32.000 0.00 0.00 37.92 2.83
4451 7319 6.978080 ACAACATAAATCACACCTTGAAACAC 59.022 34.615 0.00 0.00 37.92 3.32
4452 7320 6.959639 ACATAAATCACACCTTGAAACACT 57.040 33.333 0.00 0.00 37.92 3.55
4453 7321 6.738114 ACATAAATCACACCTTGAAACACTG 58.262 36.000 0.00 0.00 37.92 3.66
4473 7343 6.479660 ACACTGATTTTGTTTTGCCTACATTG 59.520 34.615 0.00 0.00 0.00 2.82
4474 7344 6.700960 CACTGATTTTGTTTTGCCTACATTGA 59.299 34.615 0.00 0.00 0.00 2.57
4475 7345 7.385752 CACTGATTTTGTTTTGCCTACATTGAT 59.614 33.333 0.00 0.00 0.00 2.57
4476 7346 7.933033 ACTGATTTTGTTTTGCCTACATTGATT 59.067 29.630 0.00 0.00 0.00 2.57
4477 7347 8.674263 TGATTTTGTTTTGCCTACATTGATTT 57.326 26.923 0.00 0.00 0.00 2.17
4478 7348 9.770097 TGATTTTGTTTTGCCTACATTGATTTA 57.230 25.926 0.00 0.00 0.00 1.40
4549 7419 9.862149 TCTCCTTTGACTTTTTAATTTAGGACT 57.138 29.630 0.00 0.00 0.00 3.85
4558 7428 9.451002 ACTTTTTAATTTAGGACTCTCTTAGCC 57.549 33.333 0.00 0.00 0.00 3.93
4589 7460 1.380380 CTGGAGGGGGTGGCATTTC 60.380 63.158 0.00 0.00 0.00 2.17
4623 7494 4.745783 GCTGGTAGTTTTAGTTGTGAGGGT 60.746 45.833 0.00 0.00 0.00 4.34
4625 7496 5.127491 TGGTAGTTTTAGTTGTGAGGGTTG 58.873 41.667 0.00 0.00 0.00 3.77
4626 7497 5.104444 TGGTAGTTTTAGTTGTGAGGGTTGA 60.104 40.000 0.00 0.00 0.00 3.18
4627 7498 5.237996 GGTAGTTTTAGTTGTGAGGGTTGAC 59.762 44.000 0.00 0.00 0.00 3.18
4628 7499 4.850680 AGTTTTAGTTGTGAGGGTTGACA 58.149 39.130 0.00 0.00 0.00 3.58
4639 7510 5.163248 TGTGAGGGTTGACAACTTCTTCATA 60.163 40.000 17.52 9.46 0.00 2.15
4649 7520 8.394971 TGACAACTTCTTCATAACAACATGAT 57.605 30.769 0.00 0.00 34.95 2.45
4653 7524 9.979270 CAACTTCTTCATAACAACATGATAGTC 57.021 33.333 0.00 0.00 34.95 2.59
4654 7525 9.725019 AACTTCTTCATAACAACATGATAGTCA 57.275 29.630 0.00 0.00 34.95 3.41
4655 7526 9.376075 ACTTCTTCATAACAACATGATAGTCAG 57.624 33.333 0.00 0.00 34.95 3.51
4656 7527 9.591792 CTTCTTCATAACAACATGATAGTCAGA 57.408 33.333 0.00 0.00 34.95 3.27
4723 7598 7.282332 ACTAGTACTAGGAAAAAGTGTTCGT 57.718 36.000 29.05 5.52 37.49 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.606795 CCGATGTTGCACCAAATCGTTT 60.607 45.455 9.52 0.00 40.14 3.60
17 18 1.673993 ATCGCCGATGTTGCACCAA 60.674 52.632 0.00 0.00 0.00 3.67
25 26 1.069765 GTGGGATCATCGCCGATGT 59.930 57.895 24.89 13.46 40.55 3.06
42 43 0.531974 ATGTTGCGGTCAGACGTTGT 60.532 50.000 0.00 0.00 35.98 3.32
43 44 0.163788 GATGTTGCGGTCAGACGTTG 59.836 55.000 0.00 0.00 35.98 4.10
44 45 0.249699 TGATGTTGCGGTCAGACGTT 60.250 50.000 0.00 0.00 35.98 3.99
45 46 0.667487 CTGATGTTGCGGTCAGACGT 60.667 55.000 0.00 0.00 43.50 4.34
47 48 1.790387 GCTGATGTTGCGGTCAGAC 59.210 57.895 6.56 0.00 43.50 3.51
48 49 4.284123 GCTGATGTTGCGGTCAGA 57.716 55.556 6.56 0.00 43.50 3.27
73 74 0.798776 GGTGTTGCAGGAAGTCATCG 59.201 55.000 0.00 0.00 0.00 3.84
76 77 0.819259 GCTGGTGTTGCAGGAAGTCA 60.819 55.000 0.00 0.00 0.00 3.41
80 81 1.073025 ATCGCTGGTGTTGCAGGAA 59.927 52.632 0.00 0.00 0.00 3.36
85 86 1.154150 GAAGCATCGCTGGTGTTGC 60.154 57.895 8.58 8.58 39.62 4.17
116 117 2.094258 GTGTTACGGCAGACATGTGATG 59.906 50.000 1.15 2.79 0.00 3.07
158 160 2.876581 CATCACCAATGCTGCAGGA 58.123 52.632 17.12 14.45 0.00 3.86
172 174 0.889994 GCCCATGTTGTGAAGCATCA 59.110 50.000 0.00 0.00 0.00 3.07
192 194 0.744771 GCGGGAGGGTTGTGAGAATC 60.745 60.000 0.00 0.00 0.00 2.52
216 218 1.667724 GTGTTGAGGAAGCATCATCGG 59.332 52.381 0.00 0.00 39.20 4.18
220 222 1.699083 TCCTGTGTTGAGGAAGCATCA 59.301 47.619 0.00 0.00 39.32 3.07
240 242 3.491766 TCATAGACTTGGGGGAGTTCT 57.508 47.619 0.00 0.00 0.00 3.01
247 249 1.541233 GGACGCATCATAGACTTGGGG 60.541 57.143 0.00 0.00 0.00 4.96
248 250 1.869754 CGGACGCATCATAGACTTGGG 60.870 57.143 0.00 0.00 0.00 4.12
249 251 1.491670 CGGACGCATCATAGACTTGG 58.508 55.000 0.00 0.00 0.00 3.61
273 275 2.563427 GCTCGCAAAAGCTCCACC 59.437 61.111 0.00 0.00 39.27 4.61
287 289 1.376553 GCTGTGAAGAGTGGGGCTC 60.377 63.158 0.00 0.00 44.45 4.70
292 294 1.364626 GGCGATGCTGTGAAGAGTGG 61.365 60.000 0.00 0.00 0.00 4.00
296 298 2.125552 CCGGCGATGCTGTGAAGA 60.126 61.111 9.30 0.00 32.22 2.87
297 299 3.869272 GCCGGCGATGCTGTGAAG 61.869 66.667 12.58 0.00 32.22 3.02
346 348 1.257743 AGCCGAAGAGCTCTGTAACA 58.742 50.000 19.06 0.00 39.48 2.41
349 351 1.257743 ACAAGCCGAAGAGCTCTGTA 58.742 50.000 19.06 0.00 44.11 2.74
350 352 1.203523 CTACAAGCCGAAGAGCTCTGT 59.796 52.381 19.06 12.24 44.11 3.41
351 353 1.919918 CTACAAGCCGAAGAGCTCTG 58.080 55.000 19.06 6.05 44.11 3.35
352 354 0.174617 GCTACAAGCCGAAGAGCTCT 59.825 55.000 11.45 11.45 44.11 4.09
353 355 1.142778 CGCTACAAGCCGAAGAGCTC 61.143 60.000 5.27 5.27 44.11 4.09
355 357 1.414527 GACGCTACAAGCCGAAGAGC 61.415 60.000 0.00 0.00 38.18 4.09
356 358 1.134530 CGACGCTACAAGCCGAAGAG 61.135 60.000 0.00 0.00 38.18 2.85
357 359 1.154093 CGACGCTACAAGCCGAAGA 60.154 57.895 0.00 0.00 38.18 2.87
358 360 1.007336 AACGACGCTACAAGCCGAAG 61.007 55.000 0.00 0.00 38.18 3.79
359 361 1.007038 AACGACGCTACAAGCCGAA 60.007 52.632 0.00 0.00 38.18 4.30
360 362 1.731613 CAACGACGCTACAAGCCGA 60.732 57.895 0.00 0.00 38.18 5.54
361 363 1.941476 GACAACGACGCTACAAGCCG 61.941 60.000 0.00 0.00 38.18 5.52
362 364 0.666577 AGACAACGACGCTACAAGCC 60.667 55.000 0.00 0.00 38.18 4.35
363 365 0.708918 GAGACAACGACGCTACAAGC 59.291 55.000 0.00 0.00 38.02 4.01
364 366 0.975544 CGAGACAACGACGCTACAAG 59.024 55.000 0.00 0.00 35.09 3.16
365 367 3.081741 CGAGACAACGACGCTACAA 57.918 52.632 0.00 0.00 35.09 2.41
366 368 4.832767 CGAGACAACGACGCTACA 57.167 55.556 0.00 0.00 35.09 2.74
371 373 0.165295 TCTAGTGCGAGACAACGACG 59.835 55.000 0.00 0.00 35.09 5.12
372 374 1.604396 GTCTAGTGCGAGACAACGAC 58.396 55.000 7.42 0.00 44.49 4.34
373 375 0.165295 CGTCTAGTGCGAGACAACGA 59.835 55.000 11.76 0.00 45.23 3.85
374 376 0.165295 TCGTCTAGTGCGAGACAACG 59.835 55.000 11.76 3.24 45.23 4.10
375 377 2.177977 CATCGTCTAGTGCGAGACAAC 58.822 52.381 14.86 0.00 45.23 3.32
376 378 1.810755 ACATCGTCTAGTGCGAGACAA 59.189 47.619 14.86 0.00 45.23 3.18
377 379 1.397343 GACATCGTCTAGTGCGAGACA 59.603 52.381 14.86 1.75 45.23 3.41
378 380 1.666700 AGACATCGTCTAGTGCGAGAC 59.333 52.381 14.86 2.94 41.51 3.36
379 381 2.025589 AGACATCGTCTAGTGCGAGA 57.974 50.000 14.86 0.00 41.51 4.04
387 389 4.643463 GAGACCATCCTAGACATCGTCTA 58.357 47.826 3.95 3.95 41.51 2.59
388 390 3.482436 GAGACCATCCTAGACATCGTCT 58.518 50.000 1.75 1.75 45.54 4.18
389 391 2.224549 CGAGACCATCCTAGACATCGTC 59.775 54.545 0.00 0.00 0.00 4.20
390 392 2.158798 TCGAGACCATCCTAGACATCGT 60.159 50.000 0.00 0.00 0.00 3.73
391 393 2.495084 TCGAGACCATCCTAGACATCG 58.505 52.381 0.00 0.00 0.00 3.84
394 396 2.489255 GGGATCGAGACCATCCTAGACA 60.489 54.545 12.39 0.00 40.00 3.41
406 408 0.461870 CCATTGTTGCGGGATCGAGA 60.462 55.000 0.00 0.00 39.00 4.04
408 410 0.742990 GACCATTGTTGCGGGATCGA 60.743 55.000 0.00 0.00 39.00 3.59
409 411 1.024046 TGACCATTGTTGCGGGATCG 61.024 55.000 0.00 0.00 39.81 3.69
422 424 1.956477 GTTGCAAAGGACAGTGACCAT 59.044 47.619 14.19 0.00 0.00 3.55
430 432 1.523154 GGCCGATGTTGCAAAGGACA 61.523 55.000 0.00 0.00 0.00 4.02
431 433 1.212751 GGCCGATGTTGCAAAGGAC 59.787 57.895 0.00 0.55 0.00 3.85
467 469 3.713826 AGAGAACGAGAGGAAGAGAGT 57.286 47.619 0.00 0.00 0.00 3.24
479 481 1.611977 TCCGCTTCTCAAAGAGAACGA 59.388 47.619 21.64 10.53 42.78 3.85
506 508 0.174617 ACAACCAAAACCAACGGCAG 59.825 50.000 0.00 0.00 0.00 4.85
511 513 5.179533 ACCAAATACACAACCAAAACCAAC 58.820 37.500 0.00 0.00 0.00 3.77
513 515 5.892119 TCTACCAAATACACAACCAAAACCA 59.108 36.000 0.00 0.00 0.00 3.67
515 517 5.918576 GCTCTACCAAATACACAACCAAAAC 59.081 40.000 0.00 0.00 0.00 2.43
525 527 2.093869 GGACACCGCTCTACCAAATACA 60.094 50.000 0.00 0.00 0.00 2.29
527 529 2.093869 GTGGACACCGCTCTACCAAATA 60.094 50.000 0.00 0.00 32.32 1.40
539 541 1.533625 AATGACCAATGTGGACACCG 58.466 50.000 0.18 0.00 44.27 4.94
542 544 4.567537 CCTCCTTAATGACCAATGTGGACA 60.568 45.833 0.18 1.20 45.41 4.02
545 547 3.696051 CACCTCCTTAATGACCAATGTGG 59.304 47.826 0.00 0.00 45.02 4.17
546 548 3.696051 CCACCTCCTTAATGACCAATGTG 59.304 47.826 0.00 0.00 0.00 3.21
547 549 3.333680 ACCACCTCCTTAATGACCAATGT 59.666 43.478 0.00 0.00 0.00 2.71
550 552 2.027561 CGACCACCTCCTTAATGACCAA 60.028 50.000 0.00 0.00 0.00 3.67
559 561 3.308188 CCTTATTTTCCGACCACCTCCTT 60.308 47.826 0.00 0.00 0.00 3.36
572 574 2.033424 GCACCGCTCCATCCTTATTTTC 59.967 50.000 0.00 0.00 0.00 2.29
602 604 4.047059 GGACCCGTGAACGCTCGA 62.047 66.667 0.00 0.00 38.18 4.04
603 605 4.052229 AGGACCCGTGAACGCTCG 62.052 66.667 0.00 0.00 38.18 5.03
613 618 3.873812 GCATACCCCCAGGACCCG 61.874 72.222 0.00 0.00 36.73 5.28
654 1991 1.504900 GTTGATTTCCGTTCGCCCC 59.495 57.895 0.00 0.00 0.00 5.80
663 2000 0.815095 AAATCGCCCGGTTGATTTCC 59.185 50.000 19.81 0.00 39.89 3.13
674 2011 0.958876 AGAAACACCGGAAATCGCCC 60.959 55.000 9.46 0.00 37.59 6.13
677 2014 3.889196 TTTGAGAAACACCGGAAATCG 57.111 42.857 9.46 0.00 38.88 3.34
681 2018 6.452494 TTTGTTATTTGAGAAACACCGGAA 57.548 33.333 9.46 0.00 35.43 4.30
735 2106 7.589587 CGTAAGAGTGTTTTCATTTGCATACAA 59.410 33.333 0.00 0.00 43.02 2.41
767 2138 7.442656 TCTCTCTTTTTCGGACAAAAGATAGT 58.557 34.615 22.07 0.00 46.71 2.12
776 2147 4.399219 TCTCTCTCTCTCTTTTTCGGACA 58.601 43.478 0.00 0.00 0.00 4.02
777 2148 4.142469 CCTCTCTCTCTCTCTTTTTCGGAC 60.142 50.000 0.00 0.00 0.00 4.79
779 2150 3.130340 CCCTCTCTCTCTCTCTTTTTCGG 59.870 52.174 0.00 0.00 0.00 4.30
782 2153 4.352893 CCTCCCTCTCTCTCTCTCTTTTT 58.647 47.826 0.00 0.00 0.00 1.94
785 2156 1.852965 CCCTCCCTCTCTCTCTCTCTT 59.147 57.143 0.00 0.00 0.00 2.85
787 2158 1.421646 CTCCCTCCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
789 2160 1.421646 CTCTCCCTCCCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
790 2161 1.010793 TCTCTCCCTCCCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
791 2162 1.421646 CTCTCTCCCTCCCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
793 2164 1.421646 CTCTCTCTCCCTCCCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
794 2165 1.522900 CTCTCTCTCCCTCCCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
795 2166 0.478507 CCTCTCTCTCCCTCCCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
796 2167 0.998945 CCCTCTCTCTCCCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
797 2168 0.996762 TCCCTCTCTCTCCCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
798 2169 0.998945 CTCCCTCTCTCTCCCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
799 2170 0.996762 TCTCCCTCTCTCTCCCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
800 2171 0.478507 CTCTCCCTCTCTCTCCCTCC 59.521 65.000 0.00 0.00 0.00 4.30
801 2172 1.421646 CTCTCTCCCTCTCTCTCCCTC 59.578 61.905 0.00 0.00 0.00 4.30
802 2173 1.010793 TCTCTCTCCCTCTCTCTCCCT 59.989 57.143 0.00 0.00 0.00 4.20
803 2174 1.421646 CTCTCTCTCCCTCTCTCTCCC 59.578 61.905 0.00 0.00 0.00 4.30
804 2175 2.408565 TCTCTCTCTCCCTCTCTCTCC 58.591 57.143 0.00 0.00 0.00 3.71
805 2176 3.711704 TCTTCTCTCTCTCCCTCTCTCTC 59.288 52.174 0.00 0.00 0.00 3.20
806 2177 3.736094 TCTTCTCTCTCTCCCTCTCTCT 58.264 50.000 0.00 0.00 0.00 3.10
807 2178 4.503714 TTCTTCTCTCTCTCCCTCTCTC 57.496 50.000 0.00 0.00 0.00 3.20
808 2179 4.292306 AGTTTCTTCTCTCTCTCCCTCTCT 59.708 45.833 0.00 0.00 0.00 3.10
809 2180 4.399303 CAGTTTCTTCTCTCTCTCCCTCTC 59.601 50.000 0.00 0.00 0.00 3.20
810 2181 4.202673 ACAGTTTCTTCTCTCTCTCCCTCT 60.203 45.833 0.00 0.00 0.00 3.69
811 2182 4.086457 ACAGTTTCTTCTCTCTCTCCCTC 58.914 47.826 0.00 0.00 0.00 4.30
812 2183 4.086457 GACAGTTTCTTCTCTCTCTCCCT 58.914 47.826 0.00 0.00 0.00 4.20
813 2184 4.086457 AGACAGTTTCTTCTCTCTCTCCC 58.914 47.826 0.00 0.00 0.00 4.30
814 2185 5.722021 AAGACAGTTTCTTCTCTCTCTCC 57.278 43.478 0.00 0.00 40.98 3.71
815 2186 6.744112 TGAAAGACAGTTTCTTCTCTCTCTC 58.256 40.000 0.00 0.00 44.41 3.20
816 2187 6.723298 TGAAAGACAGTTTCTTCTCTCTCT 57.277 37.500 0.00 0.00 44.41 3.10
832 2203 5.069119 ACCCAAGAAAATGGAACTGAAAGAC 59.931 40.000 0.00 0.00 43.54 3.01
841 2218 6.376018 CGTTTAGGATACCCAAGAAAATGGAA 59.624 38.462 0.00 0.00 43.54 3.53
1305 2705 1.993653 CAGGATCCTGGTGAAGCCA 59.006 57.895 31.14 0.00 46.95 4.75
1422 2822 1.153823 CACCTAACCGAGCGACTGG 60.154 63.158 0.00 0.00 0.00 4.00
1427 2827 1.349259 CCGTTTCACCTAACCGAGCG 61.349 60.000 0.00 0.00 0.00 5.03
1453 2853 2.159382 ACCGAGCAACAGGGTAAAATG 58.841 47.619 0.00 0.00 30.76 2.32
1561 2965 0.096976 CAATTCACGTGATCCGCACC 59.903 55.000 20.80 0.00 44.85 5.01
1579 2983 4.842531 TTGCTGATCTTCCTATCAACCA 57.157 40.909 0.00 0.00 35.51 3.67
1670 3081 2.226330 TGTTATGGTGGTGCTGTGTTC 58.774 47.619 0.00 0.00 0.00 3.18
1684 3102 6.371271 GGGTTTGGGACATCAAATTTGTTATG 59.629 38.462 17.47 16.05 39.30 1.90
1725 3144 0.830648 TCTATGCCCTGACCTTTCCG 59.169 55.000 0.00 0.00 0.00 4.30
1911 3335 1.378762 GGTAGCAGCAGGGTCCAAA 59.621 57.895 0.00 0.00 0.00 3.28
2003 3429 8.432805 TCATCATGAGAGACATACTGAGTAGTA 58.567 37.037 0.09 0.00 43.19 1.82
2004 3430 7.228507 GTCATCATGAGAGACATACTGAGTAGT 59.771 40.741 20.32 0.00 37.46 2.73
2005 3431 7.228308 TGTCATCATGAGAGACATACTGAGTAG 59.772 40.741 22.76 0.00 37.36 2.57
2046 3472 1.308998 CCAACAGTGACAGTTCCACC 58.691 55.000 0.00 0.00 35.23 4.61
2109 3535 5.914033 TGTTTGTCCATCAGTATACTAGGC 58.086 41.667 4.74 5.63 0.00 3.93
2110 3536 8.964476 AATTGTTTGTCCATCAGTATACTAGG 57.036 34.615 4.74 8.31 0.00 3.02
2111 3537 9.599866 TGAATTGTTTGTCCATCAGTATACTAG 57.400 33.333 4.74 0.69 0.00 2.57
2112 3538 9.952030 TTGAATTGTTTGTCCATCAGTATACTA 57.048 29.630 4.74 0.00 0.00 1.82
2113 3539 8.862325 TTGAATTGTTTGTCCATCAGTATACT 57.138 30.769 0.00 0.00 0.00 2.12
2114 3540 8.946085 TCTTGAATTGTTTGTCCATCAGTATAC 58.054 33.333 0.00 0.00 0.00 1.47
2115 3541 9.685276 ATCTTGAATTGTTTGTCCATCAGTATA 57.315 29.630 0.00 0.00 0.00 1.47
2175 3603 6.603237 TTCTCAAAGATATAATGCGTGGTG 57.397 37.500 0.00 0.00 0.00 4.17
2382 3816 5.713389 TCAACTAAGATACTGGTTCCGAAGA 59.287 40.000 0.00 0.00 0.00 2.87
2387 3821 7.110155 TGGAAATCAACTAAGATACTGGTTCC 58.890 38.462 0.00 0.00 33.51 3.62
2416 3850 9.533831 TCTGCCATCAAGATATATCTACAGTAA 57.466 33.333 15.64 0.00 35.76 2.24
2418 3852 7.363705 GCTCTGCCATCAAGATATATCTACAGT 60.364 40.741 15.64 0.00 35.76 3.55
2542 3976 1.132453 GGGAAGAATTTACGCAGCACC 59.868 52.381 0.00 0.00 0.00 5.01
2756 4191 3.535561 TGCTTCGGGATCTTTCTTCATC 58.464 45.455 0.00 0.00 0.00 2.92
2784 4219 0.850100 TCAAGAACCCAGCCAAAGGA 59.150 50.000 0.00 0.00 0.00 3.36
2786 4221 3.070015 ACATTTCAAGAACCCAGCCAAAG 59.930 43.478 0.00 0.00 0.00 2.77
2852 4287 3.256631 ACGCCTGATTGAAAGCTTGAATT 59.743 39.130 0.00 0.00 0.00 2.17
2853 4288 2.821969 ACGCCTGATTGAAAGCTTGAAT 59.178 40.909 0.00 1.19 0.00 2.57
2888 4323 7.813148 GCATAGAGACGTTGGTATACACAATAT 59.187 37.037 5.01 0.18 0.00 1.28
2893 4328 4.976731 CAGCATAGAGACGTTGGTATACAC 59.023 45.833 5.01 0.00 0.00 2.90
2901 4336 5.233050 CCAGAATAACAGCATAGAGACGTTG 59.767 44.000 0.00 0.00 0.00 4.10
2902 4337 5.127194 TCCAGAATAACAGCATAGAGACGTT 59.873 40.000 0.00 0.00 0.00 3.99
3081 4516 6.146021 GTGGCTAAAACAACAGAATGGAATTG 59.854 38.462 0.00 0.00 43.62 2.32
3348 4783 2.354303 CCACACTTTGAGGTACGCCATA 60.354 50.000 0.00 0.00 37.19 2.74
3384 4819 8.957466 GGAAAACAAATATTAGAAGCTGTAGGT 58.043 33.333 0.00 0.00 0.00 3.08
3403 4838 2.721425 AGGTCCTTGAACGGAAAACA 57.279 45.000 0.00 0.00 34.20 2.83
3537 6364 6.650427 AATGTGTACTGAGTACTGACAAGA 57.350 37.500 21.95 2.19 39.49 3.02
3538 6365 7.368059 TGTAATGTGTACTGAGTACTGACAAG 58.632 38.462 21.95 0.00 39.49 3.16
3576 6403 3.201266 AGGGACTTGTGGTAAGTGTGAAA 59.799 43.478 0.00 0.00 27.25 2.69
3645 6472 5.768317 CGGAAAACACAAAATCCACTGTAT 58.232 37.500 0.00 0.00 32.08 2.29
3648 6475 2.794350 GCGGAAAACACAAAATCCACTG 59.206 45.455 0.00 0.00 32.08 3.66
3763 6590 2.365582 CACTTATTTTGGGACGGAGGG 58.634 52.381 0.00 0.00 0.00 4.30
3764 6591 1.743394 GCACTTATTTTGGGACGGAGG 59.257 52.381 0.00 0.00 0.00 4.30
3765 6592 1.743394 GGCACTTATTTTGGGACGGAG 59.257 52.381 0.00 0.00 0.00 4.63
3766 6593 1.353022 AGGCACTTATTTTGGGACGGA 59.647 47.619 0.00 0.00 27.25 4.69
3767 6594 1.743394 GAGGCACTTATTTTGGGACGG 59.257 52.381 0.00 0.00 41.55 4.79
3768 6595 2.432444 TGAGGCACTTATTTTGGGACG 58.568 47.619 0.00 0.00 41.55 4.79
3769 6596 3.826729 AGTTGAGGCACTTATTTTGGGAC 59.173 43.478 0.00 0.00 41.55 4.46
3770 6597 4.112634 AGTTGAGGCACTTATTTTGGGA 57.887 40.909 0.00 0.00 41.55 4.37
3771 6598 4.871933 AAGTTGAGGCACTTATTTTGGG 57.128 40.909 0.00 0.00 41.55 4.12
3772 6599 5.600696 ACAAAGTTGAGGCACTTATTTTGG 58.399 37.500 0.00 0.00 41.55 3.28
3773 6600 6.640907 GGTACAAAGTTGAGGCACTTATTTTG 59.359 38.462 0.00 0.00 41.55 2.44
3774 6601 6.322712 TGGTACAAAGTTGAGGCACTTATTTT 59.677 34.615 0.00 0.00 35.87 1.82
3775 6602 5.830991 TGGTACAAAGTTGAGGCACTTATTT 59.169 36.000 0.00 0.00 35.87 1.40
3776 6603 5.381757 TGGTACAAAGTTGAGGCACTTATT 58.618 37.500 0.00 0.00 35.87 1.40
3777 6604 4.980573 TGGTACAAAGTTGAGGCACTTAT 58.019 39.130 0.00 0.00 35.87 1.73
3778 6605 4.385825 CTGGTACAAAGTTGAGGCACTTA 58.614 43.478 0.00 0.00 36.56 2.24
3779 6606 3.214328 CTGGTACAAAGTTGAGGCACTT 58.786 45.455 0.00 0.00 36.56 3.16
3780 6607 2.851195 CTGGTACAAAGTTGAGGCACT 58.149 47.619 0.00 0.00 40.03 4.40
3781 6608 1.266989 GCTGGTACAAAGTTGAGGCAC 59.733 52.381 0.00 0.00 38.70 5.01
3782 6609 1.142870 AGCTGGTACAAAGTTGAGGCA 59.857 47.619 0.00 0.00 38.70 4.75
3783 6610 1.807142 GAGCTGGTACAAAGTTGAGGC 59.193 52.381 0.00 0.00 38.70 4.70
3784 6611 3.409026 AGAGCTGGTACAAAGTTGAGG 57.591 47.619 0.00 0.00 38.70 3.86
3785 6612 5.140747 ACTAGAGCTGGTACAAAGTTGAG 57.859 43.478 0.00 0.00 38.70 3.02
3786 6613 6.022163 GTACTAGAGCTGGTACAAAGTTGA 57.978 41.667 16.27 0.00 43.99 3.18
3807 6634 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
3808 6635 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
3809 6636 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
3810 6637 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
3811 6638 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
3812 6639 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
3813 6640 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
3814 6641 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
3815 6642 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
3816 6643 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
3817 6644 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
3818 6645 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
3819 6646 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
3820 6647 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
3821 6648 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
3822 6649 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
3823 6650 4.518970 TGTCCCAAAATAAGTGTCTTGAGC 59.481 41.667 0.00 0.00 0.00 4.26
3824 6651 5.997746 TCTGTCCCAAAATAAGTGTCTTGAG 59.002 40.000 0.00 0.00 0.00 3.02
3825 6652 5.935945 TCTGTCCCAAAATAAGTGTCTTGA 58.064 37.500 0.00 0.00 0.00 3.02
3826 6653 5.182001 CCTCTGTCCCAAAATAAGTGTCTTG 59.818 44.000 0.00 0.00 0.00 3.02
3827 6654 5.316987 CCTCTGTCCCAAAATAAGTGTCTT 58.683 41.667 0.00 0.00 0.00 3.01
3828 6655 4.263506 CCCTCTGTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
3829 6656 4.010349 CCCTCTGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
3830 6657 3.655777 TCCCTCTGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
3831 6658 4.301072 TCCCTCTGTCCCAAAATAAGTG 57.699 45.455 0.00 0.00 0.00 3.16
3832 6659 5.536497 ATTCCCTCTGTCCCAAAATAAGT 57.464 39.130 0.00 0.00 0.00 2.24
3833 6660 6.663734 AGTATTCCCTCTGTCCCAAAATAAG 58.336 40.000 0.00 0.00 0.00 1.73
3834 6661 6.652205 AGTATTCCCTCTGTCCCAAAATAA 57.348 37.500 0.00 0.00 0.00 1.40
3835 6662 6.011981 ACAAGTATTCCCTCTGTCCCAAAATA 60.012 38.462 0.00 0.00 0.00 1.40
3836 6663 5.222337 ACAAGTATTCCCTCTGTCCCAAAAT 60.222 40.000 0.00 0.00 0.00 1.82
3837 6664 4.105697 ACAAGTATTCCCTCTGTCCCAAAA 59.894 41.667 0.00 0.00 0.00 2.44
3838 6665 3.655777 ACAAGTATTCCCTCTGTCCCAAA 59.344 43.478 0.00 0.00 0.00 3.28
3839 6666 3.256704 ACAAGTATTCCCTCTGTCCCAA 58.743 45.455 0.00 0.00 0.00 4.12
3840 6667 2.838202 GACAAGTATTCCCTCTGTCCCA 59.162 50.000 0.00 0.00 0.00 4.37
3841 6668 2.838202 TGACAAGTATTCCCTCTGTCCC 59.162 50.000 0.00 0.00 0.00 4.46
3842 6669 4.508662 CTTGACAAGTATTCCCTCTGTCC 58.491 47.826 7.05 0.00 0.00 4.02
3843 6670 3.935828 GCTTGACAAGTATTCCCTCTGTC 59.064 47.826 16.39 0.00 0.00 3.51
3844 6671 3.307762 GGCTTGACAAGTATTCCCTCTGT 60.308 47.826 16.39 0.00 0.00 3.41
3845 6672 3.274288 GGCTTGACAAGTATTCCCTCTG 58.726 50.000 16.39 0.00 0.00 3.35
3846 6673 2.093447 CGGCTTGACAAGTATTCCCTCT 60.093 50.000 16.39 0.00 0.00 3.69
3847 6674 2.093658 TCGGCTTGACAAGTATTCCCTC 60.094 50.000 16.39 0.00 0.00 4.30
3848 6675 1.906574 TCGGCTTGACAAGTATTCCCT 59.093 47.619 16.39 0.00 0.00 4.20
3849 6676 2.396590 TCGGCTTGACAAGTATTCCC 57.603 50.000 16.39 7.74 0.00 3.97
3850 6677 4.965119 AAATCGGCTTGACAAGTATTCC 57.035 40.909 16.39 8.08 0.00 3.01
3851 6678 5.699839 ACAAAATCGGCTTGACAAGTATTC 58.300 37.500 16.39 0.00 0.00 1.75
3852 6679 5.705609 ACAAAATCGGCTTGACAAGTATT 57.294 34.783 16.39 10.79 0.00 1.89
3853 6680 5.705609 AACAAAATCGGCTTGACAAGTAT 57.294 34.783 16.39 5.69 0.00 2.12
3854 6681 5.277825 CAAACAAAATCGGCTTGACAAGTA 58.722 37.500 16.39 3.61 0.00 2.24
3855 6682 4.111916 CAAACAAAATCGGCTTGACAAGT 58.888 39.130 16.39 0.00 0.00 3.16
3856 6683 3.060339 GCAAACAAAATCGGCTTGACAAG 60.060 43.478 11.02 11.02 0.00 3.16
3857 6684 2.863137 GCAAACAAAATCGGCTTGACAA 59.137 40.909 0.00 0.00 0.00 3.18
3876 6726 3.664025 CTTGGCCGGTGATCGAGCA 62.664 63.158 0.00 0.00 42.43 4.26
3908 6758 4.448210 GCCCTGGATAAAACTCGTATGAA 58.552 43.478 0.00 0.00 0.00 2.57
3918 6768 1.564348 GAGTCAGGGCCCTGGATAAAA 59.436 52.381 44.36 26.27 43.75 1.52
3952 6802 0.612732 TTCAGCAATCCAAGGCCAGG 60.613 55.000 5.01 6.73 0.00 4.45
4037 6887 7.042925 CGTTTCCGTTATAATTCTCACCTAAGG 60.043 40.741 0.00 0.00 0.00 2.69
4053 6903 1.682854 ACCTCACACTCGTTTCCGTTA 59.317 47.619 0.00 0.00 35.01 3.18
4056 6906 0.249322 ACACCTCACACTCGTTTCCG 60.249 55.000 0.00 0.00 0.00 4.30
4062 6912 0.930310 CACAACACACCTCACACTCG 59.070 55.000 0.00 0.00 0.00 4.18
4073 6923 3.872696 TCAAGAAGAAGAGCACAACACA 58.127 40.909 0.00 0.00 0.00 3.72
4146 6996 1.069022 AGTGTACGCGCGACTTTTCTA 60.069 47.619 39.36 13.96 0.00 2.10
4156 7006 2.285428 GCCTAAAATACAGTGTACGCGC 60.285 50.000 5.73 0.00 0.00 6.86
4245 7095 9.624373 AAGTCATATTTACTCATCAAGCTGAAT 57.376 29.630 0.00 0.00 0.00 2.57
4246 7096 9.453572 AAAGTCATATTTACTCATCAAGCTGAA 57.546 29.630 0.00 0.00 0.00 3.02
4248 7098 8.127327 CCAAAGTCATATTTACTCATCAAGCTG 58.873 37.037 0.00 0.00 0.00 4.24
4266 7118 9.796120 CAACTTCTTTTTATACAACCAAAGTCA 57.204 29.630 0.00 0.00 0.00 3.41
4267 7119 8.752254 GCAACTTCTTTTTATACAACCAAAGTC 58.248 33.333 0.00 0.00 0.00 3.01
4268 7120 7.709182 GGCAACTTCTTTTTATACAACCAAAGT 59.291 33.333 0.00 0.00 0.00 2.66
4269 7121 7.170828 GGGCAACTTCTTTTTATACAACCAAAG 59.829 37.037 0.00 0.00 0.00 2.77
4270 7122 6.987404 GGGCAACTTCTTTTTATACAACCAAA 59.013 34.615 0.00 0.00 0.00 3.28
4271 7123 6.325286 AGGGCAACTTCTTTTTATACAACCAA 59.675 34.615 0.00 0.00 0.00 3.67
4298 7150 8.910351 AGTAAGGGCAAATATATCACTTCTTC 57.090 34.615 0.00 0.00 0.00 2.87
4352 7204 5.543020 AGGCCTAATGTATACCAAGTAGGAC 59.457 44.000 16.72 14.67 40.74 3.85
4367 7222 5.220931 GCAAGTGAAGTGATTAGGCCTAATG 60.221 44.000 37.09 22.65 36.02 1.90
4372 7227 2.162408 GTGCAAGTGAAGTGATTAGGCC 59.838 50.000 0.00 0.00 0.00 5.19
4375 7230 5.455392 CCTTTGTGCAAGTGAAGTGATTAG 58.545 41.667 0.00 0.00 0.00 1.73
4388 7243 4.141846 TGGTTAAAATGAGCCTTTGTGCAA 60.142 37.500 0.00 0.00 0.00 4.08
4390 7245 3.988819 TGGTTAAAATGAGCCTTTGTGC 58.011 40.909 0.00 0.00 0.00 4.57
4409 7264 1.667236 TGTTGACAACAGCAGTCTGG 58.333 50.000 17.02 0.00 44.54 3.86
4448 7316 5.590530 TGTAGGCAAAACAAAATCAGTGT 57.409 34.783 0.00 0.00 0.00 3.55
4449 7317 6.700960 TCAATGTAGGCAAAACAAAATCAGTG 59.299 34.615 0.00 0.00 0.00 3.66
4450 7318 6.815089 TCAATGTAGGCAAAACAAAATCAGT 58.185 32.000 0.00 0.00 0.00 3.41
4451 7319 7.894376 ATCAATGTAGGCAAAACAAAATCAG 57.106 32.000 0.00 0.00 0.00 2.90
4452 7320 8.674263 AAATCAATGTAGGCAAAACAAAATCA 57.326 26.923 0.00 0.00 0.00 2.57
4532 7402 9.451002 GGCTAAGAGAGTCCTAAATTAAAAAGT 57.549 33.333 0.00 0.00 0.00 2.66
4542 7412 1.400737 GCCGGCTAAGAGAGTCCTAA 58.599 55.000 22.15 0.00 0.00 2.69
4549 7419 1.870055 AACGTTCGCCGGCTAAGAGA 61.870 55.000 26.68 11.29 42.24 3.10
4575 7445 1.304134 GTTCGAAATGCCACCCCCT 60.304 57.895 0.00 0.00 0.00 4.79
4576 7446 2.696759 CGTTCGAAATGCCACCCCC 61.697 63.158 0.00 0.00 0.00 5.40
4600 7471 3.751698 CCCTCACAACTAAAACTACCAGC 59.248 47.826 0.00 0.00 0.00 4.85
4605 7476 5.991861 TGTCAACCCTCACAACTAAAACTA 58.008 37.500 0.00 0.00 0.00 2.24
4623 7494 8.219546 TCATGTTGTTATGAAGAAGTTGTCAA 57.780 30.769 0.00 0.00 34.32 3.18
4625 7496 9.979270 CTATCATGTTGTTATGAAGAAGTTGTC 57.021 33.333 0.00 0.00 40.21 3.18
4626 7497 9.507329 ACTATCATGTTGTTATGAAGAAGTTGT 57.493 29.630 0.00 0.00 40.21 3.32
4627 7498 9.979270 GACTATCATGTTGTTATGAAGAAGTTG 57.021 33.333 0.00 0.00 40.21 3.16
4628 7499 9.725019 TGACTATCATGTTGTTATGAAGAAGTT 57.275 29.630 0.00 0.00 40.21 2.66
4630 7501 9.591792 TCTGACTATCATGTTGTTATGAAGAAG 57.408 33.333 0.00 0.00 40.21 2.85
4631 7502 9.942850 TTCTGACTATCATGTTGTTATGAAGAA 57.057 29.630 0.00 0.00 40.21 2.52
4632 7503 9.942850 TTTCTGACTATCATGTTGTTATGAAGA 57.057 29.630 0.00 0.00 40.21 2.87
4667 7542 9.852091 TTGCTTTGCAAAATCTTAAACAAAAAT 57.148 22.222 13.84 0.00 45.96 1.82
4684 7559 7.386848 CCTAGTACTAGTTTTAGTTGCTTTGCA 59.613 37.037 24.84 0.00 40.55 4.08
4701 7576 7.981225 ACAAACGAACACTTTTTCCTAGTACTA 59.019 33.333 1.89 1.89 0.00 1.82
4702 7577 6.820152 ACAAACGAACACTTTTTCCTAGTACT 59.180 34.615 0.00 0.00 0.00 2.73
4703 7578 7.008440 ACAAACGAACACTTTTTCCTAGTAC 57.992 36.000 0.00 0.00 0.00 2.73
4723 7598 0.846427 AGCTGGGAGGGGATGACAAA 60.846 55.000 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.