Multiple sequence alignment - TraesCS7B01G045000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G045000 chr7B 100.000 2407 0 0 1 2407 44294574 44292168 0.000000e+00 4446
1 TraesCS7B01G045000 chr7B 86.013 1337 112 45 433 1722 44272551 44271243 0.000000e+00 1363
2 TraesCS7B01G045000 chr7B 82.816 1257 127 53 541 1765 44259087 44257888 0.000000e+00 1042
3 TraesCS7B01G045000 chr7B 87.852 568 69 0 1840 2407 696300825 696301392 0.000000e+00 667
4 TraesCS7B01G045000 chr7D 86.530 1314 118 37 1 1285 92239019 92237736 0.000000e+00 1391
5 TraesCS7B01G045000 chr7D 90.538 613 33 12 1251 1839 92237734 92237123 0.000000e+00 787
6 TraesCS7B01G045000 chr7D 85.884 673 61 14 643 1303 92230562 92229912 0.000000e+00 686
7 TraesCS7B01G045000 chr7D 84.288 541 52 21 1249 1760 92229912 92229376 4.620000e-137 497
8 TraesCS7B01G045000 chr7D 92.143 140 11 0 1246 1385 92234691 92234552 5.250000e-47 198
9 TraesCS7B01G045000 chr7A 88.661 926 69 22 824 1722 94400484 94399568 0.000000e+00 1096
10 TraesCS7B01G045000 chr7A 91.593 797 51 11 1 786 94401276 94400485 0.000000e+00 1086
11 TraesCS7B01G045000 chr7A 83.213 1251 129 50 541 1765 94384833 94383638 0.000000e+00 1072
12 TraesCS7B01G045000 chr6B 98.768 568 7 0 1840 2407 12716032 12715465 0.000000e+00 1011
13 TraesCS7B01G045000 chr2A 88.339 566 63 2 1842 2407 719680689 719680127 0.000000e+00 676
14 TraesCS7B01G045000 chr2B 86.926 566 74 0 1842 2407 480816050 480815485 9.390000e-179 636
15 TraesCS7B01G045000 chr2B 86.292 569 74 3 1840 2407 634200349 634199784 1.220000e-172 616
16 TraesCS7B01G045000 chr2B 82.867 572 96 2 1837 2407 769925956 769926526 1.650000e-141 512
17 TraesCS7B01G045000 chr5D 83.246 573 92 4 1837 2407 522145551 522146121 7.620000e-145 523
18 TraesCS7B01G045000 chr2D 84.512 523 81 0 1885 2407 629831162 629830640 3.550000e-143 518
19 TraesCS7B01G045000 chrUn 81.961 571 97 6 1840 2407 100634598 100634031 1.670000e-131 479


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G045000 chr7B 44292168 44294574 2406 True 4446.0 4446 100.0000 1 2407 1 chr7B.!!$R3 2406
1 TraesCS7B01G045000 chr7B 44271243 44272551 1308 True 1363.0 1363 86.0130 433 1722 1 chr7B.!!$R2 1289
2 TraesCS7B01G045000 chr7B 44257888 44259087 1199 True 1042.0 1042 82.8160 541 1765 1 chr7B.!!$R1 1224
3 TraesCS7B01G045000 chr7B 696300825 696301392 567 False 667.0 667 87.8520 1840 2407 1 chr7B.!!$F1 567
4 TraesCS7B01G045000 chr7D 92229376 92239019 9643 True 711.8 1391 87.8766 1 1839 5 chr7D.!!$R1 1838
5 TraesCS7B01G045000 chr7A 94399568 94401276 1708 True 1091.0 1096 90.1270 1 1722 2 chr7A.!!$R2 1721
6 TraesCS7B01G045000 chr7A 94383638 94384833 1195 True 1072.0 1072 83.2130 541 1765 1 chr7A.!!$R1 1224
7 TraesCS7B01G045000 chr6B 12715465 12716032 567 True 1011.0 1011 98.7680 1840 2407 1 chr6B.!!$R1 567
8 TraesCS7B01G045000 chr2A 719680127 719680689 562 True 676.0 676 88.3390 1842 2407 1 chr2A.!!$R1 565
9 TraesCS7B01G045000 chr2B 480815485 480816050 565 True 636.0 636 86.9260 1842 2407 1 chr2B.!!$R1 565
10 TraesCS7B01G045000 chr2B 634199784 634200349 565 True 616.0 616 86.2920 1840 2407 1 chr2B.!!$R2 567
11 TraesCS7B01G045000 chr2B 769925956 769926526 570 False 512.0 512 82.8670 1837 2407 1 chr2B.!!$F1 570
12 TraesCS7B01G045000 chr5D 522145551 522146121 570 False 523.0 523 83.2460 1837 2407 1 chr5D.!!$F1 570
13 TraesCS7B01G045000 chr2D 629830640 629831162 522 True 518.0 518 84.5120 1885 2407 1 chr2D.!!$R1 522
14 TraesCS7B01G045000 chrUn 100634031 100634598 567 True 479.0 479 81.9610 1840 2407 1 chrUn.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 694 0.034477 CCATGGTTGGGGGTAGACAC 60.034 60.0 2.57 0.0 39.56 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1625 9569 0.179062 GGCCATGCTCCACTAGTCAG 60.179 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.559682 GGAAACTAGGCATGTCCTGGA 59.440 52.381 20.75 0.00 45.56 3.86
77 78 2.420687 GGAAACTAGGCATGTCCTGGAG 60.421 54.545 20.75 12.84 45.56 3.86
78 79 2.254152 AACTAGGCATGTCCTGGAGA 57.746 50.000 20.75 0.00 45.56 3.71
87 88 2.704190 TGTCCTGGAGAAGAAGAGGT 57.296 50.000 0.00 0.00 0.00 3.85
96 97 1.202818 AGAAGAAGAGGTTGTGTGCCC 60.203 52.381 0.00 0.00 0.00 5.36
99 100 0.179018 GAAGAGGTTGTGTGCCCTGT 60.179 55.000 0.00 0.00 0.00 4.00
185 191 1.593006 GTAACTCCATCGCCGTGAATG 59.407 52.381 0.00 0.00 0.00 2.67
252 259 5.766150 TTGTCAATTACCAGGTGTCAAAG 57.234 39.130 0.76 0.00 0.00 2.77
255 262 3.568007 TCAATTACCAGGTGTCAAAGCAC 59.432 43.478 0.76 0.00 38.56 4.40
318 329 3.048600 TGCCTGATAAGTGATAAGGGCT 58.951 45.455 0.00 0.00 36.70 5.19
361 373 4.555906 GCCAAACTGCACGTACATAAAACT 60.556 41.667 0.00 0.00 0.00 2.66
420 432 2.882137 TCAAATGGTTTCCGGACACTTC 59.118 45.455 19.70 5.46 0.00 3.01
481 498 2.290071 GGACAATTTTCTGGAGGGACGA 60.290 50.000 0.00 0.00 0.00 4.20
588 616 4.627467 CACTTGACAGAGTTCTTAATCCCG 59.373 45.833 0.00 0.00 0.00 5.14
597 625 0.757935 TCTTAATCCCGTCCTCCCCG 60.758 60.000 0.00 0.00 0.00 5.73
660 688 3.672503 GGCTCCATGGTTGGGGGT 61.673 66.667 12.58 0.00 44.52 4.95
666 694 0.034477 CCATGGTTGGGGGTAGACAC 60.034 60.000 2.57 0.00 39.56 3.67
667 695 0.392461 CATGGTTGGGGGTAGACACG 60.392 60.000 0.00 0.00 0.00 4.49
670 698 1.375523 GTTGGGGGTAGACACGCTG 60.376 63.158 0.38 0.00 37.73 5.18
864 8727 3.503748 GGGTCAAATGGTTCTTCAGACAG 59.496 47.826 0.00 0.00 0.00 3.51
871 8734 3.230976 TGGTTCTTCAGACAGCAGAGTA 58.769 45.455 0.00 0.00 0.00 2.59
876 8745 3.829026 TCTTCAGACAGCAGAGTACACAT 59.171 43.478 0.00 0.00 0.00 3.21
1048 8917 1.302351 GCCACTGTGCTTCTGCTCT 60.302 57.895 1.29 0.00 40.48 4.09
1156 9025 1.404035 GCTGTTGTTTCCGGTGTTTCT 59.596 47.619 0.00 0.00 0.00 2.52
1180 9053 3.254654 CGTTGCGCGATGATCCGT 61.255 61.111 12.10 0.00 44.77 4.69
1340 9269 0.617935 AAGAGAAAGAGAGGGCAGGC 59.382 55.000 0.00 0.00 0.00 4.85
1382 9314 0.639943 TGGACTACTATGGCCCCAGA 59.360 55.000 0.00 0.00 0.00 3.86
1385 9317 0.642710 ACTACTATGGCCCCAGAGGT 59.357 55.000 13.04 0.26 39.36 3.85
1415 9347 0.524862 GGCACCACTGAGCAGATTTG 59.475 55.000 4.21 0.00 0.00 2.32
1430 9362 3.201708 CAGATTTGTCCCTGGATTCTCCT 59.798 47.826 0.00 0.00 37.46 3.69
1433 9365 4.469469 TTTGTCCCTGGATTCTCCTTTT 57.531 40.909 0.00 0.00 37.46 2.27
1590 9533 6.866770 GCTGATGTACTACTAACTTGTTGACA 59.133 38.462 0.00 0.00 0.00 3.58
1629 9573 9.654663 AAAACTAGTGGAGTATAAATGACTGAC 57.345 33.333 0.00 0.00 37.44 3.51
1633 9577 9.344772 CTAGTGGAGTATAAATGACTGACTAGT 57.655 37.037 0.00 0.00 40.66 2.57
1671 9633 1.535860 GCTGCAGTTTTTCTCGCCAAA 60.536 47.619 16.64 0.00 0.00 3.28
1687 9649 2.605580 GCCAAAGTACTCTGCTTTGTGC 60.606 50.000 14.18 12.98 46.66 4.57
1722 9684 9.825972 CAACATTATTGAAACTACTACACCAAG 57.174 33.333 0.00 0.00 0.00 3.61
1734 9696 0.188342 ACACCAAGATGGCACCCTTT 59.812 50.000 0.00 0.00 42.67 3.11
1760 9722 3.641437 TTTCTTTTTGCAGGGACATCG 57.359 42.857 0.00 0.00 0.00 3.84
1765 9727 3.574284 TTTTGCAGGGACATCGAAATG 57.426 42.857 0.00 0.00 38.93 2.32
1766 9728 1.462616 TTGCAGGGACATCGAAATGG 58.537 50.000 0.00 0.00 37.19 3.16
1767 9729 1.031571 TGCAGGGACATCGAAATGGC 61.032 55.000 0.00 0.00 40.53 4.40
1768 9730 1.031571 GCAGGGACATCGAAATGGCA 61.032 55.000 0.00 0.00 43.34 4.92
1769 9731 0.734889 CAGGGACATCGAAATGGCAC 59.265 55.000 0.00 0.00 45.59 5.01
1770 9732 0.394352 AGGGACATCGAAATGGCACC 60.394 55.000 0.00 0.00 46.53 5.01
1771 9733 0.679640 GGGACATCGAAATGGCACCA 60.680 55.000 0.00 0.00 43.34 4.17
1772 9734 1.392589 GGACATCGAAATGGCACCAT 58.607 50.000 0.00 0.00 43.34 3.55
1773 9735 1.066002 GGACATCGAAATGGCACCATG 59.934 52.381 2.19 0.00 43.34 3.66
1774 9736 2.016318 GACATCGAAATGGCACCATGA 58.984 47.619 2.19 0.00 40.97 3.07
1775 9737 2.019249 ACATCGAAATGGCACCATGAG 58.981 47.619 2.19 0.00 37.19 2.90
1776 9738 2.019249 CATCGAAATGGCACCATGAGT 58.981 47.619 2.19 0.00 36.68 3.41
1777 9739 3.205338 CATCGAAATGGCACCATGAGTA 58.795 45.455 2.19 0.00 36.68 2.59
1778 9740 2.905075 TCGAAATGGCACCATGAGTAG 58.095 47.619 2.19 0.00 36.68 2.57
1779 9741 2.236146 TCGAAATGGCACCATGAGTAGT 59.764 45.455 2.19 0.00 36.68 2.73
1780 9742 3.449377 TCGAAATGGCACCATGAGTAGTA 59.551 43.478 2.19 0.00 36.68 1.82
1781 9743 3.804325 CGAAATGGCACCATGAGTAGTAG 59.196 47.826 2.19 0.00 36.68 2.57
1782 9744 2.918712 ATGGCACCATGAGTAGTAGC 57.081 50.000 0.16 0.00 35.03 3.58
1783 9745 1.567357 TGGCACCATGAGTAGTAGCA 58.433 50.000 0.00 0.00 0.00 3.49
1784 9746 2.118679 TGGCACCATGAGTAGTAGCAT 58.881 47.619 0.00 0.00 0.00 3.79
1785 9747 2.158914 TGGCACCATGAGTAGTAGCATG 60.159 50.000 0.00 0.00 41.11 4.06
1796 9758 7.756395 TGAGTAGTAGCATGGTAGTATAACC 57.244 40.000 19.58 9.14 40.19 2.85
1797 9759 6.429078 TGAGTAGTAGCATGGTAGTATAACCG 59.571 42.308 19.58 0.00 42.91 4.44
1798 9760 4.516365 AGTAGCATGGTAGTATAACCGC 57.484 45.455 10.53 0.00 42.91 5.68
1799 9761 3.893200 AGTAGCATGGTAGTATAACCGCA 59.107 43.478 10.53 0.00 42.91 5.69
1800 9762 3.830744 AGCATGGTAGTATAACCGCAA 57.169 42.857 0.00 0.00 42.91 4.85
1801 9763 3.463944 AGCATGGTAGTATAACCGCAAC 58.536 45.455 0.00 0.00 42.91 4.17
1802 9764 3.134081 AGCATGGTAGTATAACCGCAACT 59.866 43.478 0.00 0.00 42.91 3.16
1803 9765 3.247648 GCATGGTAGTATAACCGCAACTG 59.752 47.826 0.00 0.00 42.91 3.16
1804 9766 2.896168 TGGTAGTATAACCGCAACTGC 58.104 47.619 0.00 0.00 42.91 4.40
1805 9767 2.234168 TGGTAGTATAACCGCAACTGCA 59.766 45.455 2.12 0.00 42.91 4.41
1806 9768 3.118555 TGGTAGTATAACCGCAACTGCAT 60.119 43.478 2.12 0.00 42.91 3.96
1807 9769 3.875134 GGTAGTATAACCGCAACTGCATT 59.125 43.478 2.12 0.00 42.21 3.56
1808 9770 4.334481 GGTAGTATAACCGCAACTGCATTT 59.666 41.667 2.12 0.00 42.21 2.32
1809 9771 5.163693 GGTAGTATAACCGCAACTGCATTTT 60.164 40.000 2.12 0.00 42.21 1.82
1810 9772 5.385509 AGTATAACCGCAACTGCATTTTT 57.614 34.783 2.12 0.00 42.21 1.94
1811 9773 6.503589 AGTATAACCGCAACTGCATTTTTA 57.496 33.333 2.12 0.00 42.21 1.52
1812 9774 6.319399 AGTATAACCGCAACTGCATTTTTAC 58.681 36.000 2.12 4.26 42.21 2.01
1813 9775 3.726291 AACCGCAACTGCATTTTTACT 57.274 38.095 2.12 0.00 42.21 2.24
1814 9776 3.726291 ACCGCAACTGCATTTTTACTT 57.274 38.095 2.12 0.00 42.21 2.24
1815 9777 3.638484 ACCGCAACTGCATTTTTACTTC 58.362 40.909 2.12 0.00 42.21 3.01
1816 9778 3.067461 ACCGCAACTGCATTTTTACTTCA 59.933 39.130 2.12 0.00 42.21 3.02
1817 9779 4.047822 CCGCAACTGCATTTTTACTTCAA 58.952 39.130 2.12 0.00 42.21 2.69
1818 9780 4.148696 CCGCAACTGCATTTTTACTTCAAG 59.851 41.667 2.12 0.00 42.21 3.02
1819 9781 4.148696 CGCAACTGCATTTTTACTTCAAGG 59.851 41.667 2.12 0.00 42.21 3.61
1820 9782 4.448732 GCAACTGCATTTTTACTTCAAGGG 59.551 41.667 0.00 0.00 41.59 3.95
1821 9783 5.600696 CAACTGCATTTTTACTTCAAGGGT 58.399 37.500 0.00 0.00 0.00 4.34
1822 9784 5.869649 ACTGCATTTTTACTTCAAGGGTT 57.130 34.783 0.00 0.00 0.00 4.11
1823 9785 5.600696 ACTGCATTTTTACTTCAAGGGTTG 58.399 37.500 0.00 0.00 0.00 3.77
1824 9786 5.362430 ACTGCATTTTTACTTCAAGGGTTGA 59.638 36.000 0.00 0.00 38.04 3.18
1825 9787 6.127196 ACTGCATTTTTACTTCAAGGGTTGAA 60.127 34.615 2.30 2.30 46.68 2.69
1924 9886 0.036388 ATGTCGGGTGCTCGAAATGT 60.036 50.000 0.00 0.00 41.05 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.756069 GCAGCTAAGAAATGCTCACAAG 58.244 45.455 0.00 0.00 37.44 3.16
76 77 1.202818 GGGCACACAACCTCTTCTTCT 60.203 52.381 0.00 0.00 0.00 2.85
77 78 1.202818 AGGGCACACAACCTCTTCTTC 60.203 52.381 0.00 0.00 28.88 2.87
78 79 0.846693 AGGGCACACAACCTCTTCTT 59.153 50.000 0.00 0.00 28.88 2.52
87 88 2.647683 TGATACAACAGGGCACACAA 57.352 45.000 0.00 0.00 0.00 3.33
96 97 7.630242 AACAGGGAAATGTATGATACAACAG 57.370 36.000 9.61 0.00 42.76 3.16
99 100 8.642935 TGAAAACAGGGAAATGTATGATACAA 57.357 30.769 9.61 0.00 42.76 2.41
142 148 1.064060 GATCGAATTTCAGTTGCCCCG 59.936 52.381 0.00 0.00 0.00 5.73
185 191 1.189403 GACCATCGATTCGACGACAC 58.811 55.000 11.56 0.00 44.84 3.67
265 272 3.133901 TCCTTTGTGTTCAGCTCTGTACA 59.866 43.478 5.42 5.42 38.30 2.90
266 273 3.728845 TCCTTTGTGTTCAGCTCTGTAC 58.271 45.455 0.48 0.48 0.00 2.90
267 274 3.803715 GCTCCTTTGTGTTCAGCTCTGTA 60.804 47.826 0.00 0.00 0.00 2.74
268 275 2.843701 CTCCTTTGTGTTCAGCTCTGT 58.156 47.619 0.00 0.00 0.00 3.41
269 276 1.534595 GCTCCTTTGTGTTCAGCTCTG 59.465 52.381 0.00 0.00 0.00 3.35
270 277 1.141657 TGCTCCTTTGTGTTCAGCTCT 59.858 47.619 0.00 0.00 0.00 4.09
318 329 1.939934 CGTTGTTGCTCTGTTCTCCAA 59.060 47.619 0.00 0.00 0.00 3.53
361 373 2.302733 TGCATGCAGAGAAGTTGGACTA 59.697 45.455 18.46 0.00 0.00 2.59
420 432 3.429085 GGTCGTTTAATTGCATGCAGAG 58.571 45.455 21.50 8.36 0.00 3.35
481 498 3.314553 ACGCGTAATATATTTGCTCGCT 58.685 40.909 11.67 13.29 39.99 4.93
588 616 1.153229 GTAATGCCACGGGGAGGAC 60.153 63.158 8.67 0.00 35.59 3.85
660 688 0.320421 GCTTTGGACCAGCGTGTCTA 60.320 55.000 8.29 0.26 35.54 2.59
794 823 1.598130 ACAGACACGGAGCTTTGGC 60.598 57.895 0.00 0.00 39.06 4.52
803 832 1.858458 CACACACTTACACAGACACGG 59.142 52.381 0.00 0.00 0.00 4.94
804 833 1.858458 CCACACACTTACACAGACACG 59.142 52.381 0.00 0.00 0.00 4.49
864 8727 2.757868 AGTGAGGAGATGTGTACTCTGC 59.242 50.000 0.00 0.00 35.10 4.26
871 8734 2.824936 CAGTCTCAGTGAGGAGATGTGT 59.175 50.000 19.99 0.00 45.08 3.72
876 8745 1.615651 GGCTCAGTCTCAGTGAGGAGA 60.616 57.143 22.05 15.55 44.00 3.71
1033 8902 2.424557 CATCAAGAGCAGAAGCACAGT 58.575 47.619 0.00 0.00 45.49 3.55
1180 9053 2.487762 CCGTTCCAAATAAGCAGAAGCA 59.512 45.455 0.00 0.00 45.49 3.91
1382 9314 1.078426 GTGCCTGGCGTTATGACCT 60.078 57.895 14.98 0.00 0.00 3.85
1385 9317 1.376683 GTGGTGCCTGGCGTTATGA 60.377 57.895 14.98 0.00 0.00 2.15
1444 9380 9.727859 CCTCATCATGATCATCTAAAGAAGAAT 57.272 33.333 4.86 0.00 37.89 2.40
1604 9548 9.036980 AGTCAGTCATTTATACTCCACTAGTTT 57.963 33.333 0.00 0.00 39.80 2.66
1610 9554 7.068348 TCCACTAGTCAGTCATTTATACTCCAC 59.932 40.741 0.00 0.00 30.46 4.02
1611 9555 7.123383 TCCACTAGTCAGTCATTTATACTCCA 58.877 38.462 0.00 0.00 30.46 3.86
1612 9556 7.584122 TCCACTAGTCAGTCATTTATACTCC 57.416 40.000 0.00 0.00 30.46 3.85
1613 9557 7.142680 GCTCCACTAGTCAGTCATTTATACTC 58.857 42.308 0.00 0.00 30.46 2.59
1614 9558 6.607600 TGCTCCACTAGTCAGTCATTTATACT 59.392 38.462 0.00 0.00 30.46 2.12
1615 9559 6.806751 TGCTCCACTAGTCAGTCATTTATAC 58.193 40.000 0.00 0.00 30.46 1.47
1616 9560 7.436933 CATGCTCCACTAGTCAGTCATTTATA 58.563 38.462 0.00 0.00 30.46 0.98
1617 9561 5.939764 TGCTCCACTAGTCAGTCATTTAT 57.060 39.130 0.00 0.00 30.46 1.40
1618 9562 5.395657 CCATGCTCCACTAGTCAGTCATTTA 60.396 44.000 0.00 0.00 30.46 1.40
1619 9563 4.511527 CATGCTCCACTAGTCAGTCATTT 58.488 43.478 0.00 0.00 30.46 2.32
1620 9564 3.118482 CCATGCTCCACTAGTCAGTCATT 60.118 47.826 0.00 0.00 30.46 2.57
1621 9565 2.433604 CCATGCTCCACTAGTCAGTCAT 59.566 50.000 0.00 0.00 30.46 3.06
1622 9566 1.827344 CCATGCTCCACTAGTCAGTCA 59.173 52.381 0.00 0.00 30.46 3.41
1623 9567 1.472376 GCCATGCTCCACTAGTCAGTC 60.472 57.143 0.00 0.00 30.46 3.51
1624 9568 0.539051 GCCATGCTCCACTAGTCAGT 59.461 55.000 0.00 0.00 34.42 3.41
1625 9569 0.179062 GGCCATGCTCCACTAGTCAG 60.179 60.000 0.00 0.00 0.00 3.51
1628 9572 2.735772 CCGGCCATGCTCCACTAGT 61.736 63.158 2.24 0.00 0.00 2.57
1629 9573 1.971505 TTCCGGCCATGCTCCACTAG 61.972 60.000 2.24 0.00 0.00 2.57
1633 9577 1.753848 CATTTCCGGCCATGCTCCA 60.754 57.895 2.24 0.00 0.00 3.86
1687 9649 5.418840 AGTTTCAATAATGTTGTAGCCCAGG 59.581 40.000 0.00 0.00 0.00 4.45
1734 9696 5.799213 TGTCCCTGCAAAAAGAAAAGAAAA 58.201 33.333 0.00 0.00 0.00 2.29
1760 9722 3.561725 GCTACTACTCATGGTGCCATTTC 59.438 47.826 0.13 0.00 33.90 2.17
1765 9727 2.487934 CATGCTACTACTCATGGTGCC 58.512 52.381 0.00 0.00 37.13 5.01
1770 9732 8.244802 GGTTATACTACCATGCTACTACTCATG 58.755 40.741 0.00 0.00 39.67 3.07
1771 9733 7.120873 CGGTTATACTACCATGCTACTACTCAT 59.879 40.741 0.00 0.00 38.12 2.90
1772 9734 6.429078 CGGTTATACTACCATGCTACTACTCA 59.571 42.308 0.00 0.00 38.12 3.41
1773 9735 6.622462 GCGGTTATACTACCATGCTACTACTC 60.622 46.154 0.00 0.00 38.12 2.59
1774 9736 5.182760 GCGGTTATACTACCATGCTACTACT 59.817 44.000 0.00 0.00 38.12 2.57
1775 9737 5.048504 TGCGGTTATACTACCATGCTACTAC 60.049 44.000 0.00 0.00 38.12 2.73
1776 9738 5.072055 TGCGGTTATACTACCATGCTACTA 58.928 41.667 0.00 0.00 38.12 1.82
1777 9739 3.893200 TGCGGTTATACTACCATGCTACT 59.107 43.478 0.00 0.00 38.12 2.57
1778 9740 4.247267 TGCGGTTATACTACCATGCTAC 57.753 45.455 0.00 0.00 38.12 3.58
1779 9741 4.342951 AGTTGCGGTTATACTACCATGCTA 59.657 41.667 0.00 0.00 38.12 3.49
1780 9742 3.134081 AGTTGCGGTTATACTACCATGCT 59.866 43.478 0.00 0.00 38.12 3.79
1781 9743 3.247648 CAGTTGCGGTTATACTACCATGC 59.752 47.826 0.00 0.00 38.12 4.06
1782 9744 3.247648 GCAGTTGCGGTTATACTACCATG 59.752 47.826 0.00 0.00 38.12 3.66
1783 9745 3.118555 TGCAGTTGCGGTTATACTACCAT 60.119 43.478 0.00 0.00 45.83 3.55
1784 9746 2.234168 TGCAGTTGCGGTTATACTACCA 59.766 45.455 0.00 0.00 45.83 3.25
1785 9747 2.896168 TGCAGTTGCGGTTATACTACC 58.104 47.619 0.00 0.00 45.83 3.18
1786 9748 5.479716 AAATGCAGTTGCGGTTATACTAC 57.520 39.130 0.00 0.00 45.83 2.73
1787 9749 6.503589 AAAAATGCAGTTGCGGTTATACTA 57.496 33.333 0.00 0.00 45.83 1.82
1788 9750 5.385509 AAAAATGCAGTTGCGGTTATACT 57.614 34.783 0.00 0.00 45.83 2.12
1789 9751 6.319399 AGTAAAAATGCAGTTGCGGTTATAC 58.681 36.000 0.00 5.25 45.83 1.47
1790 9752 6.503589 AGTAAAAATGCAGTTGCGGTTATA 57.496 33.333 0.00 0.00 45.83 0.98
1791 9753 5.385509 AGTAAAAATGCAGTTGCGGTTAT 57.614 34.783 0.00 0.00 45.83 1.89
1792 9754 4.839668 AGTAAAAATGCAGTTGCGGTTA 57.160 36.364 0.00 0.00 45.83 2.85
1793 9755 3.726291 AGTAAAAATGCAGTTGCGGTT 57.274 38.095 0.00 0.00 45.83 4.44
1794 9756 3.067461 TGAAGTAAAAATGCAGTTGCGGT 59.933 39.130 0.00 0.00 45.83 5.68
1795 9757 3.637432 TGAAGTAAAAATGCAGTTGCGG 58.363 40.909 0.00 0.00 45.83 5.69
1796 9758 4.148696 CCTTGAAGTAAAAATGCAGTTGCG 59.851 41.667 0.00 0.00 45.83 4.85
1797 9759 4.448732 CCCTTGAAGTAAAAATGCAGTTGC 59.551 41.667 0.00 0.00 42.50 4.17
1798 9760 5.600696 ACCCTTGAAGTAAAAATGCAGTTG 58.399 37.500 0.00 0.00 0.00 3.16
1799 9761 5.869649 ACCCTTGAAGTAAAAATGCAGTT 57.130 34.783 0.00 0.00 0.00 3.16
1800 9762 5.362430 TCAACCCTTGAAGTAAAAATGCAGT 59.638 36.000 0.00 0.00 36.59 4.40
1801 9763 5.841810 TCAACCCTTGAAGTAAAAATGCAG 58.158 37.500 0.00 0.00 36.59 4.41
1802 9764 5.860941 TCAACCCTTGAAGTAAAAATGCA 57.139 34.783 0.00 0.00 36.59 3.96
1820 9782 3.608474 GCTGTACATCCACGGTTTTCAAC 60.608 47.826 0.00 0.00 0.00 3.18
1821 9783 2.550606 GCTGTACATCCACGGTTTTCAA 59.449 45.455 0.00 0.00 0.00 2.69
1822 9784 2.147958 GCTGTACATCCACGGTTTTCA 58.852 47.619 0.00 0.00 0.00 2.69
1823 9785 1.127951 CGCTGTACATCCACGGTTTTC 59.872 52.381 0.00 0.00 0.00 2.29
1824 9786 1.153353 CGCTGTACATCCACGGTTTT 58.847 50.000 0.00 0.00 0.00 2.43
1825 9787 1.296056 GCGCTGTACATCCACGGTTT 61.296 55.000 0.00 0.00 0.00 3.27
1826 9788 1.740296 GCGCTGTACATCCACGGTT 60.740 57.895 0.00 0.00 0.00 4.44
1827 9789 2.125673 GCGCTGTACATCCACGGT 60.126 61.111 0.00 0.00 0.00 4.83
1828 9790 2.890474 GGCGCTGTACATCCACGG 60.890 66.667 7.64 0.00 0.00 4.94
1829 9791 2.890474 GGGCGCTGTACATCCACG 60.890 66.667 7.64 0.00 0.00 4.94
1830 9792 1.815421 CTGGGCGCTGTACATCCAC 60.815 63.158 7.64 0.00 0.00 4.02
1831 9793 2.584064 CTGGGCGCTGTACATCCA 59.416 61.111 7.64 2.79 0.00 3.41
1832 9794 2.203070 CCTGGGCGCTGTACATCC 60.203 66.667 7.64 0.00 0.00 3.51
1833 9795 2.203070 CCCTGGGCGCTGTACATC 60.203 66.667 7.64 0.00 0.00 3.06
1834 9796 2.257409 CTTCCCTGGGCGCTGTACAT 62.257 60.000 8.22 0.00 0.00 2.29
1835 9797 2.925706 TTCCCTGGGCGCTGTACA 60.926 61.111 8.22 0.00 0.00 2.90
1924 9886 2.970324 GGAAACGCGTCTGCACCA 60.970 61.111 14.44 0.00 42.97 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.