Multiple sequence alignment - TraesCS7B01G044800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G044800 chr7B 100.000 3019 0 0 1 3019 44267999 44271017 0.000000e+00 5576.0
1 TraesCS7B01G044800 chr7B 94.157 599 30 4 4 597 68187056 68186458 0.000000e+00 907.0
2 TraesCS7B01G044800 chr7B 94.010 601 30 5 4 598 567880830 567880230 0.000000e+00 905.0
3 TraesCS7B01G044800 chr7B 93.009 329 19 2 1682 2010 474288764 474288440 7.570000e-131 477.0
4 TraesCS7B01G044800 chr7B 92.749 331 19 3 1677 2007 435675629 435675954 9.800000e-130 473.0
5 TraesCS7B01G044800 chr7B 92.424 330 21 2 1680 2009 680209670 680209995 4.560000e-128 468.0
6 TraesCS7B01G044800 chr7B 82.456 513 75 7 863 1364 44255730 44256238 4.620000e-118 435.0
7 TraesCS7B01G044800 chr7B 79.032 248 34 10 2043 2284 44256449 44256684 1.450000e-33 154.0
8 TraesCS7B01G044800 chr7B 79.365 189 30 5 2291 2473 43547878 43548063 1.140000e-24 124.0
9 TraesCS7B01G044800 chr7B 90.476 42 4 0 2885 2926 43548413 43548454 4.200000e-04 56.5
10 TraesCS7B01G044800 chr7A 93.629 1083 43 7 605 1682 94395105 94396166 0.000000e+00 1594.0
11 TraesCS7B01G044800 chr7A 95.201 646 28 2 2291 2936 94396639 94397281 0.000000e+00 1018.0
12 TraesCS7B01G044800 chr7A 94.868 604 27 2 2 601 81147404 81148007 0.000000e+00 941.0
13 TraesCS7B01G044800 chr7A 95.172 290 14 0 2007 2296 94396164 94396453 2.740000e-125 459.0
14 TraesCS7B01G044800 chr7A 79.455 550 74 29 2291 2808 93141100 93140558 1.330000e-93 353.0
15 TraesCS7B01G044800 chr7A 78.423 241 40 6 2043 2280 94376851 94377082 2.430000e-31 147.0
16 TraesCS7B01G044800 chr7A 81.757 148 25 2 2327 2473 94382589 94382735 4.090000e-24 122.0
17 TraesCS7B01G044800 chr4B 94.926 611 25 4 2 606 569761179 569760569 0.000000e+00 952.0
18 TraesCS7B01G044800 chr2B 95.008 601 25 2 1 596 451119909 451120509 0.000000e+00 939.0
19 TraesCS7B01G044800 chr3A 94.324 599 29 4 4 597 84016774 84016176 0.000000e+00 913.0
20 TraesCS7B01G044800 chr3D 93.874 604 35 1 4 605 559263451 559262848 0.000000e+00 909.0
21 TraesCS7B01G044800 chr7D 93.874 604 31 1 4 601 636607326 636607929 0.000000e+00 905.0
22 TraesCS7B01G044800 chr7D 79.462 706 105 17 689 1361 92226645 92227343 5.900000e-127 464.0
23 TraesCS7B01G044800 chr7D 78.692 535 95 16 2291 2808 91664024 91663492 3.730000e-89 339.0
24 TraesCS7B01G044800 chr7D 84.583 240 37 0 2055 2294 91664450 91664211 3.890000e-59 239.0
25 TraesCS7B01G044800 chr7D 78.537 205 35 4 2066 2270 92227568 92227763 3.160000e-25 126.0
26 TraesCS7B01G044800 chr4A 93.586 608 33 5 4 605 4630220 4629613 0.000000e+00 902.0
27 TraesCS7B01G044800 chr1B 93.353 331 19 1 1682 2012 395329987 395330314 1.260000e-133 486.0
28 TraesCS7B01G044800 chr5A 92.749 331 20 2 1680 2010 374886162 374885836 2.720000e-130 475.0
29 TraesCS7B01G044800 chr5A 92.749 331 19 3 1680 2010 40613912 40613587 9.800000e-130 473.0
30 TraesCS7B01G044800 chr5A 81.690 426 71 7 899 1321 491375760 491375339 6.190000e-92 348.0
31 TraesCS7B01G044800 chr5A 84.906 106 16 0 2296 2401 491373916 491373811 1.140000e-19 108.0
32 TraesCS7B01G044800 chr5B 92.945 326 20 1 1680 2005 283986390 283986068 3.520000e-129 472.0
33 TraesCS7B01G044800 chr5B 92.447 331 20 3 1680 2009 31873790 31874116 4.560000e-128 468.0
34 TraesCS7B01G044800 chr5B 95.000 60 3 0 1001 1060 466985211 466985152 8.910000e-16 95.3
35 TraesCS7B01G044800 chr3B 92.447 331 19 4 1680 2010 607222455 607222131 4.560000e-128 468.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G044800 chr7B 44267999 44271017 3018 False 5576.000000 5576 100.000000 1 3019 1 chr7B.!!$F1 3018
1 TraesCS7B01G044800 chr7B 68186458 68187056 598 True 907.000000 907 94.157000 4 597 1 chr7B.!!$R1 593
2 TraesCS7B01G044800 chr7B 567880230 567880830 600 True 905.000000 905 94.010000 4 598 1 chr7B.!!$R3 594
3 TraesCS7B01G044800 chr7B 44255730 44256684 954 False 294.500000 435 80.744000 863 2284 2 chr7B.!!$F5 1421
4 TraesCS7B01G044800 chr7A 94395105 94397281 2176 False 1023.666667 1594 94.667333 605 2936 3 chr7A.!!$F4 2331
5 TraesCS7B01G044800 chr7A 81147404 81148007 603 False 941.000000 941 94.868000 2 601 1 chr7A.!!$F1 599
6 TraesCS7B01G044800 chr7A 93140558 93141100 542 True 353.000000 353 79.455000 2291 2808 1 chr7A.!!$R1 517
7 TraesCS7B01G044800 chr4B 569760569 569761179 610 True 952.000000 952 94.926000 2 606 1 chr4B.!!$R1 604
8 TraesCS7B01G044800 chr2B 451119909 451120509 600 False 939.000000 939 95.008000 1 596 1 chr2B.!!$F1 595
9 TraesCS7B01G044800 chr3A 84016176 84016774 598 True 913.000000 913 94.324000 4 597 1 chr3A.!!$R1 593
10 TraesCS7B01G044800 chr3D 559262848 559263451 603 True 909.000000 909 93.874000 4 605 1 chr3D.!!$R1 601
11 TraesCS7B01G044800 chr7D 636607326 636607929 603 False 905.000000 905 93.874000 4 601 1 chr7D.!!$F1 597
12 TraesCS7B01G044800 chr7D 92226645 92227763 1118 False 295.000000 464 78.999500 689 2270 2 chr7D.!!$F2 1581
13 TraesCS7B01G044800 chr7D 91663492 91664450 958 True 289.000000 339 81.637500 2055 2808 2 chr7D.!!$R1 753
14 TraesCS7B01G044800 chr4A 4629613 4630220 607 True 902.000000 902 93.586000 4 605 1 chr4A.!!$R1 601
15 TraesCS7B01G044800 chr5A 491373811 491375760 1949 True 228.000000 348 83.298000 899 2401 2 chr5A.!!$R3 1502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
629 643 0.250989 CGTCCCTGCCACCCTAAAAA 60.251 55.0 0.00 0.0 0.00 1.94 F
1875 1963 0.110486 AGCTTTTGTCACCGGACCAT 59.890 50.0 9.46 0.0 43.65 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2009 2097 0.036732 CTGGTAGCTGTCAAGGCCAA 59.963 55.0 5.01 0.0 0.00 4.52 R
2949 4041 0.114954 AGGAAGCATTTTGCCTGGGA 59.885 50.0 0.00 0.0 46.52 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 171 8.537049 TCATCTTGGTTTGAAGCATTTTATTG 57.463 30.769 0.00 0.00 36.16 1.90
217 219 1.589716 GGTTCTGCAATGCCTTCGCT 61.590 55.000 1.53 0.00 35.36 4.93
299 302 3.715097 GCAGCTCTCCTGGGCACT 61.715 66.667 0.00 0.00 42.03 4.40
334 337 3.876589 GACGCGGTTCCAGCTTCCA 62.877 63.158 12.47 0.00 0.00 3.53
338 342 2.747686 GGTTCCAGCTTCCACCGA 59.252 61.111 0.00 0.00 0.00 4.69
408 412 3.822192 CACCGGCGATGAGGACGA 61.822 66.667 9.30 0.00 42.31 4.20
483 495 4.081972 TGAAATAGAGAGAGAAAGCAGCGT 60.082 41.667 0.00 0.00 0.00 5.07
508 521 1.202952 ACTTGGGGTGTTAATGGCGAA 60.203 47.619 0.00 0.00 0.00 4.70
535 549 2.113986 GGCCGATGGAAGGGGATG 59.886 66.667 0.00 0.00 0.00 3.51
625 639 2.363795 CTCGTCCCTGCCACCCTA 60.364 66.667 0.00 0.00 0.00 3.53
629 643 0.250989 CGTCCCTGCCACCCTAAAAA 60.251 55.000 0.00 0.00 0.00 1.94
654 668 1.763545 GGAAAAGATAGCCCTCGTCCT 59.236 52.381 0.00 0.00 0.00 3.85
744 762 0.995024 CCCTCACTGAATCCCCACTT 59.005 55.000 0.00 0.00 0.00 3.16
745 763 1.340405 CCCTCACTGAATCCCCACTTG 60.340 57.143 0.00 0.00 0.00 3.16
817 838 3.499918 CCAAGATGGATCCAACGAATAGC 59.500 47.826 20.67 0.00 40.96 2.97
958 1000 5.357314 AGATCTTTCTGATTCCGACTCGTTA 59.643 40.000 0.00 0.00 35.14 3.18
964 1006 1.677052 GATTCCGACTCGTTAGCCTCT 59.323 52.381 0.00 0.00 0.00 3.69
1163 1211 4.451150 CTTCCGCAGCCGCTACCA 62.451 66.667 0.00 0.00 35.30 3.25
1192 1240 1.564348 ACAAAACACCTCCAGTCCTGT 59.436 47.619 0.00 0.00 0.00 4.00
1347 1428 1.834822 CGATGAGGGGGAGGAGGAC 60.835 68.421 0.00 0.00 0.00 3.85
1351 1432 1.834822 GAGGGGGAGGAGGACGATG 60.835 68.421 0.00 0.00 0.00 3.84
1454 1535 4.160626 GGAGGAGGAAGAATATGATACGGG 59.839 50.000 0.00 0.00 0.00 5.28
1495 1576 1.765314 ACGAAGATGAAGATGAGGGGG 59.235 52.381 0.00 0.00 0.00 5.40
1514 1595 2.192263 GGAGGAAGATGACAGGGTCTT 58.808 52.381 0.00 0.00 37.39 3.01
1578 1666 2.436646 CGCAGCCCCGACATCTTT 60.437 61.111 0.00 0.00 0.00 2.52
1596 1684 1.052617 TTGACCCTGACGTCAATGGA 58.947 50.000 30.38 13.60 45.49 3.41
1614 1702 0.323360 GAGCAACCTATTGGGGCACA 60.323 55.000 12.93 0.00 39.31 4.57
1684 1772 4.513198 CCATTTTTCGTGGCTTTAAGGA 57.487 40.909 0.00 0.00 0.00 3.36
1685 1773 4.234574 CCATTTTTCGTGGCTTTAAGGAC 58.765 43.478 0.00 0.00 0.00 3.85
1686 1774 4.261825 CCATTTTTCGTGGCTTTAAGGACA 60.262 41.667 0.00 0.00 0.00 4.02
1687 1775 5.469479 CATTTTTCGTGGCTTTAAGGACAT 58.531 37.500 0.00 0.00 0.00 3.06
1688 1776 4.497473 TTTTCGTGGCTTTAAGGACATG 57.503 40.909 6.30 6.30 32.82 3.21
1689 1777 2.851263 TCGTGGCTTTAAGGACATGT 57.149 45.000 12.03 0.00 33.29 3.21
1690 1778 3.965379 TCGTGGCTTTAAGGACATGTA 57.035 42.857 12.03 0.00 33.29 2.29
1691 1779 3.592059 TCGTGGCTTTAAGGACATGTAC 58.408 45.455 12.03 0.00 33.29 2.90
1692 1780 3.007074 TCGTGGCTTTAAGGACATGTACA 59.993 43.478 11.55 0.00 33.29 2.90
1693 1781 3.749088 CGTGGCTTTAAGGACATGTACAA 59.251 43.478 11.55 0.00 0.00 2.41
1694 1782 4.394920 CGTGGCTTTAAGGACATGTACAAT 59.605 41.667 11.55 0.82 0.00 2.71
1695 1783 5.640732 GTGGCTTTAAGGACATGTACAATG 58.359 41.667 11.55 1.63 0.00 2.82
1696 1784 4.704540 TGGCTTTAAGGACATGTACAATGG 59.295 41.667 11.55 0.00 0.00 3.16
1697 1785 4.705023 GGCTTTAAGGACATGTACAATGGT 59.295 41.667 11.55 0.00 0.00 3.55
1698 1786 5.393027 GGCTTTAAGGACATGTACAATGGTG 60.393 44.000 11.55 0.00 0.00 4.17
1699 1787 5.393027 GCTTTAAGGACATGTACAATGGTGG 60.393 44.000 11.55 0.00 0.00 4.61
1700 1788 2.128771 AGGACATGTACAATGGTGGC 57.871 50.000 11.55 0.00 0.00 5.01
1701 1789 1.354031 AGGACATGTACAATGGTGGCA 59.646 47.619 11.55 0.00 0.00 4.92
1702 1790 2.025037 AGGACATGTACAATGGTGGCAT 60.025 45.455 11.55 0.00 0.00 4.40
1703 1791 3.201930 AGGACATGTACAATGGTGGCATA 59.798 43.478 11.55 0.00 0.00 3.14
1704 1792 4.141181 AGGACATGTACAATGGTGGCATAT 60.141 41.667 11.55 0.00 0.00 1.78
1705 1793 4.022935 GGACATGTACAATGGTGGCATATG 60.023 45.833 2.19 0.00 0.00 1.78
1706 1794 3.890756 ACATGTACAATGGTGGCATATGG 59.109 43.478 0.00 0.00 0.00 2.74
1707 1795 3.941704 TGTACAATGGTGGCATATGGA 57.058 42.857 4.56 0.00 0.00 3.41
1708 1796 4.451891 TGTACAATGGTGGCATATGGAT 57.548 40.909 4.56 0.00 0.00 3.41
1709 1797 5.574970 TGTACAATGGTGGCATATGGATA 57.425 39.130 4.56 0.00 0.00 2.59
1710 1798 5.312895 TGTACAATGGTGGCATATGGATAC 58.687 41.667 4.56 0.00 0.00 2.24
1727 1815 6.400096 TGGATACATATGCCCCATGATAAA 57.600 37.500 1.58 0.00 46.17 1.40
1728 1816 6.798766 TGGATACATATGCCCCATGATAAAA 58.201 36.000 1.58 0.00 46.17 1.52
1729 1817 7.244558 TGGATACATATGCCCCATGATAAAAA 58.755 34.615 1.58 0.00 46.17 1.94
1730 1818 7.396907 TGGATACATATGCCCCATGATAAAAAG 59.603 37.037 1.58 0.00 46.17 2.27
1731 1819 7.397192 GGATACATATGCCCCATGATAAAAAGT 59.603 37.037 1.58 0.00 0.00 2.66
1732 1820 9.461312 GATACATATGCCCCATGATAAAAAGTA 57.539 33.333 1.58 0.00 0.00 2.24
1733 1821 9.821240 ATACATATGCCCCATGATAAAAAGTAA 57.179 29.630 1.58 0.00 0.00 2.24
1734 1822 8.725606 ACATATGCCCCATGATAAAAAGTAAT 57.274 30.769 1.58 0.00 0.00 1.89
1735 1823 9.158097 ACATATGCCCCATGATAAAAAGTAATT 57.842 29.630 1.58 0.00 0.00 1.40
1740 1828 8.482128 TGCCCCATGATAAAAAGTAATTTAAGG 58.518 33.333 0.00 0.00 0.00 2.69
1741 1829 8.482943 GCCCCATGATAAAAAGTAATTTAAGGT 58.517 33.333 0.00 0.00 0.00 3.50
1778 1866 6.822667 TTTTCTTCTCAATGCAAGCTATCA 57.177 33.333 0.00 0.00 0.00 2.15
1779 1867 5.808042 TTCTTCTCAATGCAAGCTATCAC 57.192 39.130 0.00 0.00 0.00 3.06
1780 1868 5.095145 TCTTCTCAATGCAAGCTATCACT 57.905 39.130 0.00 0.00 0.00 3.41
1781 1869 6.225981 TCTTCTCAATGCAAGCTATCACTA 57.774 37.500 0.00 0.00 0.00 2.74
1782 1870 6.279123 TCTTCTCAATGCAAGCTATCACTAG 58.721 40.000 0.00 0.00 0.00 2.57
1783 1871 5.604758 TCTCAATGCAAGCTATCACTAGT 57.395 39.130 0.00 0.00 0.00 2.57
1784 1872 5.354767 TCTCAATGCAAGCTATCACTAGTG 58.645 41.667 17.17 17.17 0.00 2.74
1785 1873 4.445453 TCAATGCAAGCTATCACTAGTGG 58.555 43.478 22.48 8.08 0.00 4.00
1786 1874 4.162131 TCAATGCAAGCTATCACTAGTGGA 59.838 41.667 22.48 10.25 0.00 4.02
1787 1875 3.526931 TGCAAGCTATCACTAGTGGAC 57.473 47.619 22.48 9.67 0.00 4.02
1788 1876 3.099905 TGCAAGCTATCACTAGTGGACT 58.900 45.455 22.48 11.67 0.00 3.85
1789 1877 3.515502 TGCAAGCTATCACTAGTGGACTT 59.484 43.478 22.48 16.30 0.00 3.01
1790 1878 4.116238 GCAAGCTATCACTAGTGGACTTC 58.884 47.826 22.48 8.63 0.00 3.01
1791 1879 4.382040 GCAAGCTATCACTAGTGGACTTCA 60.382 45.833 22.48 2.45 0.00 3.02
1792 1880 5.683509 GCAAGCTATCACTAGTGGACTTCAT 60.684 44.000 22.48 10.01 0.00 2.57
1793 1881 6.344500 CAAGCTATCACTAGTGGACTTCATT 58.656 40.000 22.48 6.89 0.00 2.57
1794 1882 7.492524 CAAGCTATCACTAGTGGACTTCATTA 58.507 38.462 22.48 0.13 0.00 1.90
1795 1883 7.661536 AGCTATCACTAGTGGACTTCATTAA 57.338 36.000 22.48 0.00 0.00 1.40
1796 1884 8.079211 AGCTATCACTAGTGGACTTCATTAAA 57.921 34.615 22.48 0.00 0.00 1.52
1797 1885 8.540388 AGCTATCACTAGTGGACTTCATTAAAA 58.460 33.333 22.48 0.00 0.00 1.52
1798 1886 9.162764 GCTATCACTAGTGGACTTCATTAAAAA 57.837 33.333 22.48 0.00 0.00 1.94
1832 1920 9.618890 AATAAAGATTGTAGTACACATGCATCT 57.381 29.630 1.43 5.60 34.92 2.90
1833 1921 7.545362 AAAGATTGTAGTACACATGCATCTC 57.455 36.000 12.63 0.00 33.16 2.75
1834 1922 6.477053 AGATTGTAGTACACATGCATCTCT 57.523 37.500 1.43 0.00 36.90 3.10
1835 1923 7.588497 AGATTGTAGTACACATGCATCTCTA 57.412 36.000 1.43 0.00 36.90 2.43
1836 1924 7.429633 AGATTGTAGTACACATGCATCTCTAC 58.570 38.462 1.43 6.32 36.90 2.59
1837 1925 6.775594 TTGTAGTACACATGCATCTCTACT 57.224 37.500 1.43 4.19 36.90 2.57
1838 1926 6.775594 TGTAGTACACATGCATCTCTACTT 57.224 37.500 0.00 0.00 30.04 2.24
1839 1927 7.170393 TGTAGTACACATGCATCTCTACTTT 57.830 36.000 0.00 0.00 30.04 2.66
1840 1928 7.611770 TGTAGTACACATGCATCTCTACTTTT 58.388 34.615 0.00 0.00 30.04 2.27
1841 1929 7.759886 TGTAGTACACATGCATCTCTACTTTTC 59.240 37.037 0.00 0.00 30.04 2.29
1842 1930 6.701340 AGTACACATGCATCTCTACTTTTCA 58.299 36.000 0.00 0.00 0.00 2.69
1843 1931 5.869753 ACACATGCATCTCTACTTTTCAC 57.130 39.130 0.00 0.00 0.00 3.18
1844 1932 5.555017 ACACATGCATCTCTACTTTTCACT 58.445 37.500 0.00 0.00 0.00 3.41
1845 1933 5.641209 ACACATGCATCTCTACTTTTCACTC 59.359 40.000 0.00 0.00 0.00 3.51
1846 1934 5.873712 CACATGCATCTCTACTTTTCACTCT 59.126 40.000 0.00 0.00 0.00 3.24
1847 1935 7.038048 CACATGCATCTCTACTTTTCACTCTA 58.962 38.462 0.00 0.00 0.00 2.43
1848 1936 7.547019 CACATGCATCTCTACTTTTCACTCTAA 59.453 37.037 0.00 0.00 0.00 2.10
1849 1937 7.547370 ACATGCATCTCTACTTTTCACTCTAAC 59.453 37.037 0.00 0.00 0.00 2.34
1850 1938 6.398918 TGCATCTCTACTTTTCACTCTAACC 58.601 40.000 0.00 0.00 0.00 2.85
1851 1939 6.211584 TGCATCTCTACTTTTCACTCTAACCT 59.788 38.462 0.00 0.00 0.00 3.50
1852 1940 7.100409 GCATCTCTACTTTTCACTCTAACCTT 58.900 38.462 0.00 0.00 0.00 3.50
1853 1941 7.604545 GCATCTCTACTTTTCACTCTAACCTTT 59.395 37.037 0.00 0.00 0.00 3.11
1854 1942 9.495572 CATCTCTACTTTTCACTCTAACCTTTT 57.504 33.333 0.00 0.00 0.00 2.27
1855 1943 9.713713 ATCTCTACTTTTCACTCTAACCTTTTC 57.286 33.333 0.00 0.00 0.00 2.29
1867 1955 6.131544 TCTAACCTTTTCAGCTTTTGTCAC 57.868 37.500 0.00 0.00 0.00 3.67
1869 1957 2.099098 ACCTTTTCAGCTTTTGTCACCG 59.901 45.455 0.00 0.00 0.00 4.94
1870 1958 2.543653 CCTTTTCAGCTTTTGTCACCGG 60.544 50.000 0.00 0.00 0.00 5.28
1871 1959 2.045561 TTTCAGCTTTTGTCACCGGA 57.954 45.000 9.46 0.00 0.00 5.14
1873 1961 0.534203 TCAGCTTTTGTCACCGGACC 60.534 55.000 9.46 0.00 43.65 4.46
1874 1962 0.817634 CAGCTTTTGTCACCGGACCA 60.818 55.000 9.46 0.00 43.65 4.02
1875 1963 0.110486 AGCTTTTGTCACCGGACCAT 59.890 50.000 9.46 0.00 43.65 3.55
1876 1964 1.349688 AGCTTTTGTCACCGGACCATA 59.650 47.619 9.46 0.00 43.65 2.74
1877 1965 1.467342 GCTTTTGTCACCGGACCATAC 59.533 52.381 9.46 0.00 43.65 2.39
1878 1966 2.874457 GCTTTTGTCACCGGACCATACT 60.874 50.000 9.46 0.00 43.65 2.12
1879 1967 3.408634 CTTTTGTCACCGGACCATACTT 58.591 45.455 9.46 0.00 43.65 2.24
1880 1968 3.495434 TTTGTCACCGGACCATACTTT 57.505 42.857 9.46 0.00 43.65 2.66
1881 1969 3.495434 TTGTCACCGGACCATACTTTT 57.505 42.857 9.46 0.00 43.65 2.27
1882 1970 3.495434 TGTCACCGGACCATACTTTTT 57.505 42.857 9.46 0.00 43.65 1.94
1883 1971 3.404899 TGTCACCGGACCATACTTTTTC 58.595 45.455 9.46 0.00 43.65 2.29
1884 1972 3.071892 TGTCACCGGACCATACTTTTTCT 59.928 43.478 9.46 0.00 43.65 2.52
1885 1973 3.683340 GTCACCGGACCATACTTTTTCTC 59.317 47.826 9.46 0.00 38.12 2.87
1886 1974 3.581332 TCACCGGACCATACTTTTTCTCT 59.419 43.478 9.46 0.00 0.00 3.10
1887 1975 4.041198 TCACCGGACCATACTTTTTCTCTT 59.959 41.667 9.46 0.00 0.00 2.85
1888 1976 4.392138 CACCGGACCATACTTTTTCTCTTC 59.608 45.833 9.46 0.00 0.00 2.87
1889 1977 4.041198 ACCGGACCATACTTTTTCTCTTCA 59.959 41.667 9.46 0.00 0.00 3.02
1890 1978 5.001232 CCGGACCATACTTTTTCTCTTCAA 58.999 41.667 0.00 0.00 0.00 2.69
1891 1979 5.122396 CCGGACCATACTTTTTCTCTTCAAG 59.878 44.000 0.00 0.00 0.00 3.02
1892 1980 5.390991 CGGACCATACTTTTTCTCTTCAAGC 60.391 44.000 0.00 0.00 0.00 4.01
1893 1981 5.473504 GGACCATACTTTTTCTCTTCAAGCA 59.526 40.000 0.00 0.00 0.00 3.91
1894 1982 6.319141 ACCATACTTTTTCTCTTCAAGCAC 57.681 37.500 0.00 0.00 0.00 4.40
1895 1983 5.241728 ACCATACTTTTTCTCTTCAAGCACC 59.758 40.000 0.00 0.00 0.00 5.01
1896 1984 5.335976 CCATACTTTTTCTCTTCAAGCACCC 60.336 44.000 0.00 0.00 0.00 4.61
1897 1985 2.618709 ACTTTTTCTCTTCAAGCACCCG 59.381 45.455 0.00 0.00 0.00 5.28
1898 1986 0.951558 TTTTCTCTTCAAGCACCCGC 59.048 50.000 0.00 0.00 38.99 6.13
1899 1987 0.889186 TTTCTCTTCAAGCACCCGCC 60.889 55.000 0.00 0.00 39.83 6.13
1900 1988 1.768684 TTCTCTTCAAGCACCCGCCT 61.769 55.000 0.00 0.00 39.83 5.52
1901 1989 1.743252 CTCTTCAAGCACCCGCCTC 60.743 63.158 0.00 0.00 39.83 4.70
1902 1990 2.747855 CTTCAAGCACCCGCCTCC 60.748 66.667 0.00 0.00 39.83 4.30
1903 1991 3.249189 TTCAAGCACCCGCCTCCT 61.249 61.111 0.00 0.00 39.83 3.69
1904 1992 3.551496 TTCAAGCACCCGCCTCCTG 62.551 63.158 0.00 0.00 39.83 3.86
1909 1997 3.465403 CACCCGCCTCCTGGAGAG 61.465 72.222 25.18 17.02 42.83 3.20
1921 2009 3.143338 GGAGAGGATCCCGCTTCC 58.857 66.667 8.55 6.90 43.01 3.46
1922 2010 2.512355 GGAGAGGATCCCGCTTCCC 61.512 68.421 8.55 1.29 43.01 3.97
1923 2011 1.458588 GAGAGGATCCCGCTTCCCT 60.459 63.158 8.55 0.00 32.83 4.20
1924 2012 0.178958 GAGAGGATCCCGCTTCCCTA 60.179 60.000 8.55 0.00 32.83 3.53
1925 2013 0.489567 AGAGGATCCCGCTTCCCTAT 59.510 55.000 8.55 0.00 33.66 2.57
1926 2014 0.899019 GAGGATCCCGCTTCCCTATC 59.101 60.000 8.55 0.00 33.45 2.08
1927 2015 0.545548 AGGATCCCGCTTCCCTATCC 60.546 60.000 8.55 0.00 37.05 2.59
1928 2016 1.592223 GATCCCGCTTCCCTATCCG 59.408 63.158 0.00 0.00 0.00 4.18
1929 2017 0.898789 GATCCCGCTTCCCTATCCGA 60.899 60.000 0.00 0.00 0.00 4.55
1930 2018 0.471211 ATCCCGCTTCCCTATCCGAA 60.471 55.000 0.00 0.00 0.00 4.30
1931 2019 1.069258 CCCGCTTCCCTATCCGAAC 59.931 63.158 0.00 0.00 0.00 3.95
1932 2020 1.069258 CCGCTTCCCTATCCGAACC 59.931 63.158 0.00 0.00 0.00 3.62
1933 2021 1.400530 CCGCTTCCCTATCCGAACCT 61.401 60.000 0.00 0.00 0.00 3.50
1934 2022 1.325355 CGCTTCCCTATCCGAACCTA 58.675 55.000 0.00 0.00 0.00 3.08
1935 2023 1.000496 CGCTTCCCTATCCGAACCTAC 60.000 57.143 0.00 0.00 0.00 3.18
1936 2024 2.317973 GCTTCCCTATCCGAACCTACT 58.682 52.381 0.00 0.00 0.00 2.57
1937 2025 2.699321 GCTTCCCTATCCGAACCTACTT 59.301 50.000 0.00 0.00 0.00 2.24
1938 2026 3.134262 GCTTCCCTATCCGAACCTACTTT 59.866 47.826 0.00 0.00 0.00 2.66
1939 2027 4.343239 GCTTCCCTATCCGAACCTACTTTA 59.657 45.833 0.00 0.00 0.00 1.85
1940 2028 5.011840 GCTTCCCTATCCGAACCTACTTTAT 59.988 44.000 0.00 0.00 0.00 1.40
1941 2029 6.464039 GCTTCCCTATCCGAACCTACTTTATT 60.464 42.308 0.00 0.00 0.00 1.40
1942 2030 7.256083 GCTTCCCTATCCGAACCTACTTTATTA 60.256 40.741 0.00 0.00 0.00 0.98
1943 2031 7.530426 TCCCTATCCGAACCTACTTTATTAC 57.470 40.000 0.00 0.00 0.00 1.89
1944 2032 6.207417 TCCCTATCCGAACCTACTTTATTACG 59.793 42.308 0.00 0.00 0.00 3.18
1945 2033 6.015940 CCCTATCCGAACCTACTTTATTACGT 60.016 42.308 0.00 0.00 0.00 3.57
1946 2034 7.080724 CCTATCCGAACCTACTTTATTACGTC 58.919 42.308 0.00 0.00 0.00 4.34
1947 2035 5.895636 TCCGAACCTACTTTATTACGTCA 57.104 39.130 0.00 0.00 0.00 4.35
1948 2036 6.455360 TCCGAACCTACTTTATTACGTCAT 57.545 37.500 0.00 0.00 0.00 3.06
1949 2037 7.566760 TCCGAACCTACTTTATTACGTCATA 57.433 36.000 0.00 0.00 0.00 2.15
1950 2038 8.169977 TCCGAACCTACTTTATTACGTCATAT 57.830 34.615 0.00 0.00 0.00 1.78
1951 2039 8.292448 TCCGAACCTACTTTATTACGTCATATC 58.708 37.037 0.00 0.00 0.00 1.63
1952 2040 7.540055 CCGAACCTACTTTATTACGTCATATCC 59.460 40.741 0.00 0.00 0.00 2.59
1953 2041 7.269937 CGAACCTACTTTATTACGTCATATCCG 59.730 40.741 0.00 0.00 0.00 4.18
1954 2042 7.750229 ACCTACTTTATTACGTCATATCCGA 57.250 36.000 0.00 0.00 0.00 4.55
1955 2043 8.345724 ACCTACTTTATTACGTCATATCCGAT 57.654 34.615 0.00 0.00 0.00 4.18
1956 2044 8.457261 ACCTACTTTATTACGTCATATCCGATC 58.543 37.037 0.00 0.00 0.00 3.69
1957 2045 7.914346 CCTACTTTATTACGTCATATCCGATCC 59.086 40.741 0.00 0.00 0.00 3.36
1958 2046 7.463961 ACTTTATTACGTCATATCCGATCCT 57.536 36.000 0.00 0.00 0.00 3.24
1959 2047 8.571461 ACTTTATTACGTCATATCCGATCCTA 57.429 34.615 0.00 0.00 0.00 2.94
1960 2048 8.457261 ACTTTATTACGTCATATCCGATCCTAC 58.543 37.037 0.00 0.00 0.00 3.18
1961 2049 7.926674 TTATTACGTCATATCCGATCCTACA 57.073 36.000 0.00 0.00 0.00 2.74
1962 2050 8.515695 TTATTACGTCATATCCGATCCTACAT 57.484 34.615 0.00 0.00 0.00 2.29
1963 2051 4.703645 ACGTCATATCCGATCCTACATG 57.296 45.455 0.00 0.00 0.00 3.21
1964 2052 3.444034 ACGTCATATCCGATCCTACATGG 59.556 47.826 0.00 0.00 37.10 3.66
1965 2053 3.735208 CGTCATATCCGATCCTACATGGC 60.735 52.174 0.00 0.00 35.26 4.40
1966 2054 3.195610 GTCATATCCGATCCTACATGGCA 59.804 47.826 0.00 0.00 35.26 4.92
1967 2055 4.033009 TCATATCCGATCCTACATGGCAT 58.967 43.478 0.00 0.00 35.26 4.40
1968 2056 5.069119 GTCATATCCGATCCTACATGGCATA 59.931 44.000 0.00 0.00 35.26 3.14
1969 2057 3.895232 ATCCGATCCTACATGGCATAC 57.105 47.619 0.00 0.00 35.26 2.39
1970 2058 1.544246 TCCGATCCTACATGGCATACG 59.456 52.381 0.00 0.00 35.26 3.06
1971 2059 1.544246 CCGATCCTACATGGCATACGA 59.456 52.381 0.00 0.00 35.26 3.43
1972 2060 2.416027 CCGATCCTACATGGCATACGAG 60.416 54.545 0.00 0.00 35.26 4.18
1973 2061 2.416027 CGATCCTACATGGCATACGAGG 60.416 54.545 12.92 12.92 35.26 4.63
1974 2062 0.679505 TCCTACATGGCATACGAGGC 59.320 55.000 13.89 0.00 35.26 4.70
1979 2067 4.855105 TGGCATACGAGGCATCAC 57.145 55.556 0.00 0.00 39.34 3.06
1980 2068 1.146041 TGGCATACGAGGCATCACC 59.854 57.895 0.00 0.00 39.34 4.02
1993 2081 2.336945 CATCACCTTGAGGCTATGCA 57.663 50.000 0.00 0.00 39.32 3.96
1994 2082 2.860009 CATCACCTTGAGGCTATGCAT 58.140 47.619 3.79 3.79 39.32 3.96
1995 2083 3.220110 CATCACCTTGAGGCTATGCATT 58.780 45.455 3.54 0.00 39.32 3.56
1996 2084 2.646930 TCACCTTGAGGCTATGCATTG 58.353 47.619 3.54 3.55 39.32 2.82
1997 2085 2.025981 TCACCTTGAGGCTATGCATTGT 60.026 45.455 3.54 0.00 39.32 2.71
1998 2086 3.199727 TCACCTTGAGGCTATGCATTGTA 59.800 43.478 3.54 0.00 39.32 2.41
1999 2087 3.313526 CACCTTGAGGCTATGCATTGTAC 59.686 47.826 3.54 0.42 39.32 2.90
2000 2088 3.054434 ACCTTGAGGCTATGCATTGTACA 60.054 43.478 3.54 2.41 39.32 2.90
2001 2089 4.139786 CCTTGAGGCTATGCATTGTACAT 58.860 43.478 3.54 0.00 0.00 2.29
2002 2090 4.023450 CCTTGAGGCTATGCATTGTACATG 60.023 45.833 3.54 7.24 0.00 3.21
2003 2091 2.880268 TGAGGCTATGCATTGTACATGC 59.120 45.455 3.54 17.91 44.76 4.06
2004 2092 2.227388 GAGGCTATGCATTGTACATGCC 59.773 50.000 20.37 7.92 43.94 4.40
2005 2093 1.270550 GGCTATGCATTGTACATGCCC 59.729 52.381 20.37 13.59 43.94 5.36
2006 2094 2.233271 GCTATGCATTGTACATGCCCT 58.767 47.619 20.37 13.49 43.94 5.19
2007 2095 3.411446 GCTATGCATTGTACATGCCCTA 58.589 45.455 20.37 13.77 43.94 3.53
2008 2096 3.820467 GCTATGCATTGTACATGCCCTAA 59.180 43.478 20.37 8.34 43.94 2.69
2009 2097 4.460382 GCTATGCATTGTACATGCCCTAAT 59.540 41.667 20.37 13.01 43.94 1.73
2010 2098 5.047802 GCTATGCATTGTACATGCCCTAATT 60.048 40.000 20.37 0.00 43.94 1.40
2027 2115 0.698238 ATTGGCCTTGACAGCTACCA 59.302 50.000 3.32 0.00 0.00 3.25
2081 2178 4.083537 GGCGTCAGTATACTCATCAGAGAG 60.084 50.000 1.26 0.00 44.98 3.20
2105 2202 1.457346 GAATGGACCTCAACAGCCAG 58.543 55.000 0.00 0.00 33.26 4.85
2286 3132 2.460662 ATCTGCCAGAGCTGCGTGTT 62.461 55.000 0.00 0.00 40.80 3.32
2330 3367 2.153645 GGCACCGATATCATCATTGCA 58.846 47.619 3.12 0.00 38.04 4.08
2473 3510 2.488153 GCTTCAACAATCCACCAGGTAC 59.512 50.000 0.00 0.00 35.89 3.34
2474 3511 3.750371 CTTCAACAATCCACCAGGTACA 58.250 45.455 0.00 0.00 35.89 2.90
2522 3603 9.533831 ACATATGTTACTTTTCCCTTGAGAAAT 57.466 29.630 1.41 0.00 35.74 2.17
2590 3671 8.947055 ACTCAAAACTGTTTGCTTCATTTATT 57.053 26.923 6.53 0.00 43.30 1.40
2594 3675 9.039870 CAAAACTGTTTGCTTCATTTATTGGTA 57.960 29.630 6.53 0.00 37.89 3.25
2625 3707 0.823356 GGTGGTGGCTGAAGCAAGAA 60.823 55.000 4.43 0.00 44.36 2.52
2675 3757 1.135575 GCAGTTTGAATCTCGGGCAAG 60.136 52.381 0.00 0.00 0.00 4.01
2685 3767 2.668212 CGGGCAAGCCGTTGAAGA 60.668 61.111 4.80 0.00 35.46 2.87
2738 3823 5.721480 TGGTTCTCATTCTGAGTCTTATCCA 59.279 40.000 4.21 0.00 44.58 3.41
2880 3972 3.181329 ACTGGTGGAAGATATGGTCACA 58.819 45.455 0.00 0.00 0.00 3.58
2905 3997 5.444663 AATTGTCAAGCTCTTGTTCCTTC 57.555 39.130 9.20 0.00 41.16 3.46
2919 4011 5.261209 TGTTCCTTCAGTCATTTTGTTGG 57.739 39.130 0.00 0.00 0.00 3.77
2921 4013 2.627699 TCCTTCAGTCATTTTGTTGGCC 59.372 45.455 0.00 0.00 0.00 5.36
2926 4018 2.624838 CAGTCATTTTGTTGGCCTGTCT 59.375 45.455 3.32 0.00 0.00 3.41
2931 4023 5.009610 GTCATTTTGTTGGCCTGTCTTTCTA 59.990 40.000 3.32 0.00 0.00 2.10
2936 4028 3.017442 GTTGGCCTGTCTTTCTATTCCC 58.983 50.000 3.32 0.00 0.00 3.97
2937 4029 2.562296 TGGCCTGTCTTTCTATTCCCT 58.438 47.619 3.32 0.00 0.00 4.20
2938 4030 2.919602 TGGCCTGTCTTTCTATTCCCTT 59.080 45.455 3.32 0.00 0.00 3.95
2939 4031 3.054361 TGGCCTGTCTTTCTATTCCCTTC 60.054 47.826 3.32 0.00 0.00 3.46
2940 4032 3.054361 GGCCTGTCTTTCTATTCCCTTCA 60.054 47.826 0.00 0.00 0.00 3.02
2941 4033 4.567747 GGCCTGTCTTTCTATTCCCTTCAA 60.568 45.833 0.00 0.00 0.00 2.69
2942 4034 4.396478 GCCTGTCTTTCTATTCCCTTCAAC 59.604 45.833 0.00 0.00 0.00 3.18
2943 4035 5.804771 GCCTGTCTTTCTATTCCCTTCAACT 60.805 44.000 0.00 0.00 0.00 3.16
2944 4036 5.877564 CCTGTCTTTCTATTCCCTTCAACTC 59.122 44.000 0.00 0.00 0.00 3.01
2945 4037 5.805728 TGTCTTTCTATTCCCTTCAACTCC 58.194 41.667 0.00 0.00 0.00 3.85
2946 4038 5.186942 GTCTTTCTATTCCCTTCAACTCCC 58.813 45.833 0.00 0.00 0.00 4.30
2947 4039 5.045505 GTCTTTCTATTCCCTTCAACTCCCT 60.046 44.000 0.00 0.00 0.00 4.20
2948 4040 5.551977 TCTTTCTATTCCCTTCAACTCCCTT 59.448 40.000 0.00 0.00 0.00 3.95
2949 4041 5.860648 TTCTATTCCCTTCAACTCCCTTT 57.139 39.130 0.00 0.00 0.00 3.11
2950 4042 5.437191 TCTATTCCCTTCAACTCCCTTTC 57.563 43.478 0.00 0.00 0.00 2.62
2951 4043 2.971901 TTCCCTTCAACTCCCTTTCC 57.028 50.000 0.00 0.00 0.00 3.13
2952 4044 1.073098 TCCCTTCAACTCCCTTTCCC 58.927 55.000 0.00 0.00 0.00 3.97
2953 4045 0.777446 CCCTTCAACTCCCTTTCCCA 59.223 55.000 0.00 0.00 0.00 4.37
2954 4046 1.272147 CCCTTCAACTCCCTTTCCCAG 60.272 57.143 0.00 0.00 0.00 4.45
2955 4047 1.272147 CCTTCAACTCCCTTTCCCAGG 60.272 57.143 0.00 0.00 43.49 4.45
2956 4048 0.112412 TTCAACTCCCTTTCCCAGGC 59.888 55.000 0.00 0.00 42.29 4.85
2957 4049 1.065410 TCAACTCCCTTTCCCAGGCA 61.065 55.000 0.00 0.00 42.29 4.75
2958 4050 0.178964 CAACTCCCTTTCCCAGGCAA 60.179 55.000 0.00 0.00 42.29 4.52
2959 4051 0.560688 AACTCCCTTTCCCAGGCAAA 59.439 50.000 0.00 0.00 42.29 3.68
2960 4052 0.560688 ACTCCCTTTCCCAGGCAAAA 59.439 50.000 0.00 0.00 42.29 2.44
2961 4053 1.149923 ACTCCCTTTCCCAGGCAAAAT 59.850 47.619 0.00 0.00 42.29 1.82
2962 4054 1.551883 CTCCCTTTCCCAGGCAAAATG 59.448 52.381 0.00 0.00 42.29 2.32
2963 4055 0.036105 CCCTTTCCCAGGCAAAATGC 60.036 55.000 0.00 0.00 42.29 3.56
2964 4056 0.978907 CCTTTCCCAGGCAAAATGCT 59.021 50.000 2.00 0.00 44.28 3.79
2965 4057 1.348696 CCTTTCCCAGGCAAAATGCTT 59.651 47.619 2.00 0.00 44.28 3.91
2966 4058 2.613725 CCTTTCCCAGGCAAAATGCTTC 60.614 50.000 2.00 0.00 44.28 3.86
2967 4059 0.975887 TTCCCAGGCAAAATGCTTCC 59.024 50.000 2.00 0.00 44.28 3.46
2968 4060 0.114954 TCCCAGGCAAAATGCTTCCT 59.885 50.000 2.00 0.00 44.28 3.36
2969 4061 0.248289 CCCAGGCAAAATGCTTCCTG 59.752 55.000 2.00 0.00 44.28 3.86
2970 4062 1.259609 CCAGGCAAAATGCTTCCTGA 58.740 50.000 8.56 0.00 46.80 3.86
2971 4063 1.829222 CCAGGCAAAATGCTTCCTGAT 59.171 47.619 8.56 0.00 46.80 2.90
2972 4064 2.235402 CCAGGCAAAATGCTTCCTGATT 59.765 45.455 8.56 0.00 46.80 2.57
2973 4065 3.518590 CAGGCAAAATGCTTCCTGATTC 58.481 45.455 2.00 0.00 46.80 2.52
2974 4066 3.194968 CAGGCAAAATGCTTCCTGATTCT 59.805 43.478 2.00 0.00 46.80 2.40
2975 4067 3.836562 AGGCAAAATGCTTCCTGATTCTT 59.163 39.130 2.00 0.00 44.28 2.52
2976 4068 3.930848 GGCAAAATGCTTCCTGATTCTTG 59.069 43.478 2.00 0.00 44.28 3.02
2977 4069 4.322198 GGCAAAATGCTTCCTGATTCTTGA 60.322 41.667 2.00 0.00 44.28 3.02
2978 4070 5.416947 GCAAAATGCTTCCTGATTCTTGAT 58.583 37.500 0.00 0.00 40.96 2.57
2979 4071 6.406177 GGCAAAATGCTTCCTGATTCTTGATA 60.406 38.462 2.00 0.00 44.28 2.15
2980 4072 7.208080 GCAAAATGCTTCCTGATTCTTGATAT 58.792 34.615 0.00 0.00 40.96 1.63
2981 4073 8.355169 GCAAAATGCTTCCTGATTCTTGATATA 58.645 33.333 0.00 0.00 40.96 0.86
2998 4090 9.998106 TCTTGATATAAAATACTTACTGGGAGC 57.002 33.333 0.00 0.00 0.00 4.70
2999 4091 9.220767 CTTGATATAAAATACTTACTGGGAGCC 57.779 37.037 0.00 0.00 0.00 4.70
3000 4092 8.270137 TGATATAAAATACTTACTGGGAGCCA 57.730 34.615 0.00 0.00 0.00 4.75
3017 4109 2.047274 AGGCGTGTGCGTGCTTAT 60.047 55.556 0.00 0.00 44.10 1.73
3018 4110 2.098298 GGCGTGTGCGTGCTTATG 59.902 61.111 0.00 0.00 44.10 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 7.472334 AAGCTTCAACCAGATACATCAAAAT 57.528 32.000 0.00 0.00 0.00 1.82
169 171 1.369625 CCCTCATGCTACAACCGTTC 58.630 55.000 0.00 0.00 0.00 3.95
217 219 2.583319 GCTCGCGCTGCAGACATA 60.583 61.111 20.43 0.00 0.00 2.29
389 393 4.530857 GTCCTCATCGCCGGTGGG 62.531 72.222 16.49 8.52 0.00 4.61
488 500 0.402504 TCGCCATTAACACCCCAAGT 59.597 50.000 0.00 0.00 0.00 3.16
490 502 1.249407 GTTCGCCATTAACACCCCAA 58.751 50.000 0.00 0.00 0.00 4.12
496 508 3.365465 CCACAAATCGTTCGCCATTAACA 60.365 43.478 0.00 0.00 0.00 2.41
508 521 1.748879 CCATCGGCCCACAAATCGT 60.749 57.895 0.00 0.00 0.00 3.73
535 549 4.961511 TCACGCGTGACCTGTGCC 62.962 66.667 36.40 0.00 34.14 5.01
629 643 3.519913 ACGAGGGCTATCTTTTCCTCTTT 59.480 43.478 0.00 0.00 42.56 2.52
630 644 3.108376 ACGAGGGCTATCTTTTCCTCTT 58.892 45.455 0.00 0.00 42.56 2.85
631 645 2.696187 GACGAGGGCTATCTTTTCCTCT 59.304 50.000 0.00 0.00 42.56 3.69
632 646 2.224090 GGACGAGGGCTATCTTTTCCTC 60.224 54.545 0.00 0.00 41.62 3.71
633 647 1.763545 GGACGAGGGCTATCTTTTCCT 59.236 52.381 0.00 0.00 0.00 3.36
634 648 1.763545 AGGACGAGGGCTATCTTTTCC 59.236 52.381 0.00 0.00 0.00 3.13
640 654 1.069935 GGCAAGGACGAGGGCTATC 59.930 63.158 0.00 0.00 0.00 2.08
642 656 2.284331 TGGCAAGGACGAGGGCTA 60.284 61.111 0.00 0.00 0.00 3.93
644 658 3.959991 GAGTGGCAAGGACGAGGGC 62.960 68.421 0.00 0.00 0.00 5.19
654 668 0.250467 GAAGAGGTGCAGAGTGGCAA 60.250 55.000 0.00 0.00 46.93 4.52
744 762 2.027745 GGTGAGTGAGAGATTCTTGCCA 60.028 50.000 0.00 0.00 0.00 4.92
745 763 2.027745 TGGTGAGTGAGAGATTCTTGCC 60.028 50.000 0.00 0.00 0.00 4.52
817 838 1.610522 CAAGAACAAGACCCTTGCCTG 59.389 52.381 6.61 0.00 32.16 4.85
958 1000 5.359292 GGCAAAGATTTAAGATTGAGAGGCT 59.641 40.000 0.00 0.00 0.00 4.58
964 1006 5.981088 TGCAGGCAAAGATTTAAGATTGA 57.019 34.783 0.00 0.00 0.00 2.57
1163 1211 1.476488 GAGGTGTTTTGTGCAAGGTGT 59.524 47.619 0.00 0.00 0.00 4.16
1192 1240 2.224769 CCTCCCACCTTTGTAAGAAGCA 60.225 50.000 0.00 0.00 0.00 3.91
1272 1320 2.672478 GCAGTCGAGCACATAACTGTCT 60.672 50.000 9.08 0.00 40.92 3.41
1347 1428 0.388659 CAGCTTCCTCCTCCTCATCG 59.611 60.000 0.00 0.00 0.00 3.84
1351 1432 0.681564 TCGTCAGCTTCCTCCTCCTC 60.682 60.000 0.00 0.00 0.00 3.71
1378 1459 6.432783 TCCTCGATATCATCTTCTTCCTCTTC 59.567 42.308 3.12 0.00 0.00 2.87
1454 1535 2.041405 CCTCCTCCCCCTCCTCAC 60.041 72.222 0.00 0.00 0.00 3.51
1495 1576 2.834549 TCAAGACCCTGTCATCTTCCTC 59.165 50.000 0.00 0.00 32.77 3.71
1514 1595 0.895530 GTCCCAGACGACCATCTTCA 59.104 55.000 0.00 0.00 0.00 3.02
1546 1627 4.700365 GCGCAACTTGGTTCGGCC 62.700 66.667 0.30 0.00 37.90 6.13
1578 1666 0.608130 CTCCATTGACGTCAGGGTCA 59.392 55.000 27.46 12.63 44.74 4.02
1593 1681 1.306296 GCCCCAATAGGTTGCTCCA 59.694 57.895 1.79 0.00 39.02 3.86
1596 1684 0.323725 CTGTGCCCCAATAGGTTGCT 60.324 55.000 0.00 0.00 33.90 3.91
1614 1702 3.094062 ATCCGCCGCACATAGCACT 62.094 57.895 0.00 0.00 46.13 4.40
1648 1736 2.384933 AATGGCCCCAAGTTGCAGGA 62.385 55.000 12.95 0.00 0.00 3.86
1682 1770 1.832883 TGCCACCATTGTACATGTCC 58.167 50.000 0.00 0.00 0.00 4.02
1683 1771 4.022935 CCATATGCCACCATTGTACATGTC 60.023 45.833 0.00 0.00 32.85 3.06
1684 1772 3.890756 CCATATGCCACCATTGTACATGT 59.109 43.478 2.69 2.69 32.85 3.21
1685 1773 4.143543 TCCATATGCCACCATTGTACATG 58.856 43.478 0.00 0.00 32.85 3.21
1686 1774 4.451891 TCCATATGCCACCATTGTACAT 57.548 40.909 0.00 0.00 32.85 2.29
1687 1775 3.941704 TCCATATGCCACCATTGTACA 57.058 42.857 0.00 0.00 32.85 2.90
1688 1776 5.312895 TGTATCCATATGCCACCATTGTAC 58.687 41.667 0.00 0.00 32.85 2.90
1689 1777 5.574970 TGTATCCATATGCCACCATTGTA 57.425 39.130 0.00 0.00 32.85 2.41
1690 1778 4.451891 TGTATCCATATGCCACCATTGT 57.548 40.909 0.00 0.00 32.85 2.71
1701 1789 6.791847 ATCATGGGGCATATGTATCCATAT 57.208 37.500 19.04 13.10 43.54 1.78
1702 1790 7.704359 TTATCATGGGGCATATGTATCCATA 57.296 36.000 19.04 12.02 36.55 2.74
1703 1791 6.595313 TTATCATGGGGCATATGTATCCAT 57.405 37.500 15.86 15.86 38.61 3.41
1704 1792 6.400096 TTTATCATGGGGCATATGTATCCA 57.600 37.500 13.42 13.42 0.00 3.41
1705 1793 7.397192 ACTTTTTATCATGGGGCATATGTATCC 59.603 37.037 4.29 4.59 0.00 2.59
1706 1794 8.353423 ACTTTTTATCATGGGGCATATGTATC 57.647 34.615 4.29 0.00 0.00 2.24
1707 1795 9.821240 TTACTTTTTATCATGGGGCATATGTAT 57.179 29.630 4.29 0.00 0.00 2.29
1708 1796 9.821240 ATTACTTTTTATCATGGGGCATATGTA 57.179 29.630 4.29 0.00 0.00 2.29
1709 1797 8.725606 ATTACTTTTTATCATGGGGCATATGT 57.274 30.769 4.29 0.00 0.00 2.29
1714 1802 8.482128 CCTTAAATTACTTTTTATCATGGGGCA 58.518 33.333 0.00 0.00 0.00 5.36
1715 1803 8.482943 ACCTTAAATTACTTTTTATCATGGGGC 58.517 33.333 0.00 0.00 0.00 5.80
1754 1842 7.040201 AGTGATAGCTTGCATTGAGAAGAAAAA 60.040 33.333 0.00 0.00 0.00 1.94
1755 1843 6.432162 AGTGATAGCTTGCATTGAGAAGAAAA 59.568 34.615 0.00 0.00 0.00 2.29
1756 1844 5.942236 AGTGATAGCTTGCATTGAGAAGAAA 59.058 36.000 0.00 0.00 0.00 2.52
1757 1845 5.494724 AGTGATAGCTTGCATTGAGAAGAA 58.505 37.500 0.00 0.00 0.00 2.52
1758 1846 5.095145 AGTGATAGCTTGCATTGAGAAGA 57.905 39.130 0.00 0.00 0.00 2.87
1759 1847 6.018913 CACTAGTGATAGCTTGCATTGAGAAG 60.019 42.308 18.45 0.00 0.00 2.85
1760 1848 5.814188 CACTAGTGATAGCTTGCATTGAGAA 59.186 40.000 18.45 0.00 0.00 2.87
1761 1849 5.354767 CACTAGTGATAGCTTGCATTGAGA 58.645 41.667 18.45 0.00 0.00 3.27
1762 1850 4.510711 CCACTAGTGATAGCTTGCATTGAG 59.489 45.833 24.68 0.00 0.00 3.02
1763 1851 4.162131 TCCACTAGTGATAGCTTGCATTGA 59.838 41.667 24.68 5.06 0.00 2.57
1764 1852 4.272018 GTCCACTAGTGATAGCTTGCATTG 59.728 45.833 24.68 2.63 0.00 2.82
1765 1853 4.163078 AGTCCACTAGTGATAGCTTGCATT 59.837 41.667 24.68 0.00 0.00 3.56
1766 1854 3.708631 AGTCCACTAGTGATAGCTTGCAT 59.291 43.478 24.68 0.00 0.00 3.96
1767 1855 3.099905 AGTCCACTAGTGATAGCTTGCA 58.900 45.455 24.68 0.00 0.00 4.08
1768 1856 3.810310 AGTCCACTAGTGATAGCTTGC 57.190 47.619 24.68 4.95 0.00 4.01
1769 1857 5.330455 TGAAGTCCACTAGTGATAGCTTG 57.670 43.478 24.68 5.59 0.00 4.01
1770 1858 6.552445 AATGAAGTCCACTAGTGATAGCTT 57.448 37.500 24.68 19.15 0.00 3.74
1771 1859 7.661536 TTAATGAAGTCCACTAGTGATAGCT 57.338 36.000 24.68 12.49 0.00 3.32
1772 1860 8.718102 TTTTAATGAAGTCCACTAGTGATAGC 57.282 34.615 24.68 10.52 0.00 2.97
1806 1894 9.618890 AGATGCATGTGTACTACAATCTTTATT 57.381 29.630 2.46 0.00 43.77 1.40
1807 1895 9.265901 GAGATGCATGTGTACTACAATCTTTAT 57.734 33.333 2.46 0.00 43.77 1.40
1808 1896 8.478066 AGAGATGCATGTGTACTACAATCTTTA 58.522 33.333 2.46 0.00 43.77 1.85
1809 1897 7.334090 AGAGATGCATGTGTACTACAATCTTT 58.666 34.615 2.46 0.00 43.77 2.52
1810 1898 6.882656 AGAGATGCATGTGTACTACAATCTT 58.117 36.000 2.46 0.00 43.77 2.40
1811 1899 6.477053 AGAGATGCATGTGTACTACAATCT 57.523 37.500 2.46 9.16 43.77 2.40
1812 1900 7.429633 AGTAGAGATGCATGTGTACTACAATC 58.570 38.462 26.28 3.69 43.77 2.67
1813 1901 7.353414 AGTAGAGATGCATGTGTACTACAAT 57.647 36.000 26.28 7.72 43.77 2.71
1814 1902 6.775594 AGTAGAGATGCATGTGTACTACAA 57.224 37.500 26.28 0.00 43.77 2.41
1815 1903 6.775594 AAGTAGAGATGCATGTGTACTACA 57.224 37.500 27.25 0.00 44.87 2.74
1816 1904 7.759886 TGAAAAGTAGAGATGCATGTGTACTAC 59.240 37.037 27.25 21.48 30.49 2.73
1817 1905 7.759886 GTGAAAAGTAGAGATGCATGTGTACTA 59.240 37.037 27.25 13.62 30.49 1.82
1818 1906 6.591834 GTGAAAAGTAGAGATGCATGTGTACT 59.408 38.462 23.22 23.22 32.62 2.73
1819 1907 6.591834 AGTGAAAAGTAGAGATGCATGTGTAC 59.408 38.462 19.88 19.88 0.00 2.90
1820 1908 6.701340 AGTGAAAAGTAGAGATGCATGTGTA 58.299 36.000 2.46 0.00 0.00 2.90
1821 1909 5.555017 AGTGAAAAGTAGAGATGCATGTGT 58.445 37.500 2.46 0.00 0.00 3.72
1822 1910 5.873712 AGAGTGAAAAGTAGAGATGCATGTG 59.126 40.000 2.46 0.00 0.00 3.21
1823 1911 6.047511 AGAGTGAAAAGTAGAGATGCATGT 57.952 37.500 2.46 0.00 0.00 3.21
1824 1912 7.010923 GGTTAGAGTGAAAAGTAGAGATGCATG 59.989 40.741 2.46 0.00 0.00 4.06
1825 1913 7.044798 GGTTAGAGTGAAAAGTAGAGATGCAT 58.955 38.462 0.00 0.00 0.00 3.96
1826 1914 6.211584 AGGTTAGAGTGAAAAGTAGAGATGCA 59.788 38.462 0.00 0.00 0.00 3.96
1827 1915 6.635755 AGGTTAGAGTGAAAAGTAGAGATGC 58.364 40.000 0.00 0.00 0.00 3.91
1828 1916 9.495572 AAAAGGTTAGAGTGAAAAGTAGAGATG 57.504 33.333 0.00 0.00 0.00 2.90
1829 1917 9.713713 GAAAAGGTTAGAGTGAAAAGTAGAGAT 57.286 33.333 0.00 0.00 0.00 2.75
1830 1918 8.701895 TGAAAAGGTTAGAGTGAAAAGTAGAGA 58.298 33.333 0.00 0.00 0.00 3.10
1831 1919 8.888579 TGAAAAGGTTAGAGTGAAAAGTAGAG 57.111 34.615 0.00 0.00 0.00 2.43
1832 1920 7.441458 GCTGAAAAGGTTAGAGTGAAAAGTAGA 59.559 37.037 0.00 0.00 0.00 2.59
1833 1921 7.442666 AGCTGAAAAGGTTAGAGTGAAAAGTAG 59.557 37.037 0.00 0.00 0.00 2.57
1834 1922 7.280356 AGCTGAAAAGGTTAGAGTGAAAAGTA 58.720 34.615 0.00 0.00 0.00 2.24
1835 1923 6.122964 AGCTGAAAAGGTTAGAGTGAAAAGT 58.877 36.000 0.00 0.00 0.00 2.66
1836 1924 6.625873 AGCTGAAAAGGTTAGAGTGAAAAG 57.374 37.500 0.00 0.00 0.00 2.27
1837 1925 7.404671 AAAGCTGAAAAGGTTAGAGTGAAAA 57.595 32.000 0.00 0.00 0.00 2.29
1838 1926 7.093945 ACAAAAGCTGAAAAGGTTAGAGTGAAA 60.094 33.333 0.00 0.00 0.00 2.69
1839 1927 6.377146 ACAAAAGCTGAAAAGGTTAGAGTGAA 59.623 34.615 0.00 0.00 0.00 3.18
1840 1928 5.885912 ACAAAAGCTGAAAAGGTTAGAGTGA 59.114 36.000 0.00 0.00 0.00 3.41
1841 1929 6.136541 ACAAAAGCTGAAAAGGTTAGAGTG 57.863 37.500 0.00 0.00 0.00 3.51
1842 1930 5.885912 TGACAAAAGCTGAAAAGGTTAGAGT 59.114 36.000 0.00 0.00 0.00 3.24
1843 1931 6.202226 GTGACAAAAGCTGAAAAGGTTAGAG 58.798 40.000 0.00 0.00 0.00 2.43
1844 1932 5.067283 GGTGACAAAAGCTGAAAAGGTTAGA 59.933 40.000 0.00 0.00 0.00 2.10
1845 1933 5.281727 GGTGACAAAAGCTGAAAAGGTTAG 58.718 41.667 0.00 0.00 0.00 2.34
1846 1934 4.201970 CGGTGACAAAAGCTGAAAAGGTTA 60.202 41.667 0.00 0.00 0.00 2.85
1847 1935 3.428862 CGGTGACAAAAGCTGAAAAGGTT 60.429 43.478 0.00 0.00 0.00 3.50
1848 1936 2.099098 CGGTGACAAAAGCTGAAAAGGT 59.901 45.455 0.00 0.00 0.00 3.50
1849 1937 2.543653 CCGGTGACAAAAGCTGAAAAGG 60.544 50.000 0.00 0.00 0.00 3.11
1850 1938 2.357637 TCCGGTGACAAAAGCTGAAAAG 59.642 45.455 0.00 0.00 0.00 2.27
1851 1939 2.098443 GTCCGGTGACAAAAGCTGAAAA 59.902 45.455 0.00 0.00 41.37 2.29
1852 1940 1.673920 GTCCGGTGACAAAAGCTGAAA 59.326 47.619 0.00 0.00 41.37 2.69
1853 1941 1.305201 GTCCGGTGACAAAAGCTGAA 58.695 50.000 0.00 0.00 41.37 3.02
1854 1942 0.534203 GGTCCGGTGACAAAAGCTGA 60.534 55.000 0.00 0.00 43.65 4.26
1855 1943 0.817634 TGGTCCGGTGACAAAAGCTG 60.818 55.000 0.00 0.00 43.65 4.24
1867 1955 4.575885 TGAAGAGAAAAAGTATGGTCCGG 58.424 43.478 0.00 0.00 0.00 5.14
1869 1957 5.473504 TGCTTGAAGAGAAAAAGTATGGTCC 59.526 40.000 0.00 0.00 0.00 4.46
1870 1958 6.374578 GTGCTTGAAGAGAAAAAGTATGGTC 58.625 40.000 0.00 0.00 0.00 4.02
1871 1959 5.241728 GGTGCTTGAAGAGAAAAAGTATGGT 59.758 40.000 0.00 0.00 0.00 3.55
1873 1961 5.617751 CGGGTGCTTGAAGAGAAAAAGTATG 60.618 44.000 0.00 0.00 0.00 2.39
1874 1962 4.455877 CGGGTGCTTGAAGAGAAAAAGTAT 59.544 41.667 0.00 0.00 0.00 2.12
1875 1963 3.813166 CGGGTGCTTGAAGAGAAAAAGTA 59.187 43.478 0.00 0.00 0.00 2.24
1876 1964 2.618709 CGGGTGCTTGAAGAGAAAAAGT 59.381 45.455 0.00 0.00 0.00 2.66
1877 1965 2.605580 GCGGGTGCTTGAAGAGAAAAAG 60.606 50.000 0.00 0.00 38.39 2.27
1878 1966 1.336755 GCGGGTGCTTGAAGAGAAAAA 59.663 47.619 0.00 0.00 38.39 1.94
1879 1967 0.951558 GCGGGTGCTTGAAGAGAAAA 59.048 50.000 0.00 0.00 38.39 2.29
1880 1968 0.889186 GGCGGGTGCTTGAAGAGAAA 60.889 55.000 0.00 0.00 42.25 2.52
1881 1969 1.302511 GGCGGGTGCTTGAAGAGAA 60.303 57.895 0.00 0.00 42.25 2.87
1882 1970 2.172483 GAGGCGGGTGCTTGAAGAGA 62.172 60.000 0.00 0.00 42.25 3.10
1883 1971 1.743252 GAGGCGGGTGCTTGAAGAG 60.743 63.158 0.00 0.00 42.25 2.85
1884 1972 2.347490 GAGGCGGGTGCTTGAAGA 59.653 61.111 0.00 0.00 42.25 2.87
1885 1973 2.747855 GGAGGCGGGTGCTTGAAG 60.748 66.667 0.00 0.00 42.25 3.02
1886 1974 3.249189 AGGAGGCGGGTGCTTGAA 61.249 61.111 0.00 0.00 42.25 2.69
1887 1975 4.020617 CAGGAGGCGGGTGCTTGA 62.021 66.667 0.00 0.00 42.25 3.02
1892 1980 3.465403 CTCTCCAGGAGGCGGGTG 61.465 72.222 17.10 0.00 38.35 4.61
1901 1989 1.753368 GAAGCGGGATCCTCTCCAGG 61.753 65.000 12.58 0.00 46.98 4.45
1902 1990 1.745264 GAAGCGGGATCCTCTCCAG 59.255 63.158 12.58 0.00 46.98 3.86
1903 1991 1.762460 GGAAGCGGGATCCTCTCCA 60.762 63.158 12.58 0.00 46.98 3.86
1904 1992 2.512355 GGGAAGCGGGATCCTCTCC 61.512 68.421 12.58 11.82 44.11 3.71
1905 1993 0.178958 TAGGGAAGCGGGATCCTCTC 60.179 60.000 12.58 0.44 37.14 3.20
1906 1994 0.489567 ATAGGGAAGCGGGATCCTCT 59.510 55.000 12.58 6.48 37.14 3.69
1907 1995 0.899019 GATAGGGAAGCGGGATCCTC 59.101 60.000 12.58 4.01 37.14 3.71
1908 1996 0.545548 GGATAGGGAAGCGGGATCCT 60.546 60.000 12.58 0.00 37.14 3.24
1909 1997 1.889530 CGGATAGGGAAGCGGGATCC 61.890 65.000 1.92 1.92 36.16 3.36
1910 1998 0.898789 TCGGATAGGGAAGCGGGATC 60.899 60.000 0.00 0.00 0.00 3.36
1911 1999 0.471211 TTCGGATAGGGAAGCGGGAT 60.471 55.000 0.00 0.00 0.00 3.85
1912 2000 1.075822 TTCGGATAGGGAAGCGGGA 60.076 57.895 0.00 0.00 0.00 5.14
1913 2001 1.069258 GTTCGGATAGGGAAGCGGG 59.931 63.158 0.00 0.00 0.00 6.13
1914 2002 1.069258 GGTTCGGATAGGGAAGCGG 59.931 63.158 0.00 0.00 32.96 5.52
1915 2003 1.000496 GTAGGTTCGGATAGGGAAGCG 60.000 57.143 0.00 0.00 44.35 4.68
1916 2004 2.317973 AGTAGGTTCGGATAGGGAAGC 58.682 52.381 0.00 0.00 41.06 3.86
1917 2005 6.667558 ATAAAGTAGGTTCGGATAGGGAAG 57.332 41.667 0.00 0.00 0.00 3.46
1918 2006 7.255590 CGTAATAAAGTAGGTTCGGATAGGGAA 60.256 40.741 0.00 0.00 0.00 3.97
1919 2007 6.207417 CGTAATAAAGTAGGTTCGGATAGGGA 59.793 42.308 0.00 0.00 0.00 4.20
1920 2008 6.015940 ACGTAATAAAGTAGGTTCGGATAGGG 60.016 42.308 0.00 0.00 0.00 3.53
1921 2009 6.974965 ACGTAATAAAGTAGGTTCGGATAGG 58.025 40.000 0.00 0.00 0.00 2.57
1922 2010 7.642669 TGACGTAATAAAGTAGGTTCGGATAG 58.357 38.462 0.00 0.00 0.00 2.08
1923 2011 7.566760 TGACGTAATAAAGTAGGTTCGGATA 57.433 36.000 0.00 0.00 0.00 2.59
1924 2012 6.455360 TGACGTAATAAAGTAGGTTCGGAT 57.545 37.500 0.00 0.00 0.00 4.18
1925 2013 5.895636 TGACGTAATAAAGTAGGTTCGGA 57.104 39.130 0.00 0.00 0.00 4.55
1926 2014 7.540055 GGATATGACGTAATAAAGTAGGTTCGG 59.460 40.741 0.00 0.00 0.00 4.30
1927 2015 7.269937 CGGATATGACGTAATAAAGTAGGTTCG 59.730 40.741 0.00 0.00 0.00 3.95
1928 2016 8.292448 TCGGATATGACGTAATAAAGTAGGTTC 58.708 37.037 0.00 0.00 0.00 3.62
1929 2017 8.169977 TCGGATATGACGTAATAAAGTAGGTT 57.830 34.615 0.00 0.00 0.00 3.50
1930 2018 7.750229 TCGGATATGACGTAATAAAGTAGGT 57.250 36.000 0.00 0.00 0.00 3.08
1931 2019 7.914346 GGATCGGATATGACGTAATAAAGTAGG 59.086 40.741 0.00 0.00 0.00 3.18
1932 2020 8.675504 AGGATCGGATATGACGTAATAAAGTAG 58.324 37.037 0.00 0.00 0.00 2.57
1933 2021 8.571461 AGGATCGGATATGACGTAATAAAGTA 57.429 34.615 0.00 0.00 0.00 2.24
1934 2022 7.463961 AGGATCGGATATGACGTAATAAAGT 57.536 36.000 0.00 0.00 0.00 2.66
1935 2023 8.456471 TGTAGGATCGGATATGACGTAATAAAG 58.544 37.037 0.00 0.00 0.00 1.85
1936 2024 8.339344 TGTAGGATCGGATATGACGTAATAAA 57.661 34.615 0.00 0.00 0.00 1.40
1937 2025 7.926674 TGTAGGATCGGATATGACGTAATAA 57.073 36.000 0.00 0.00 0.00 1.40
1938 2026 7.012989 CCATGTAGGATCGGATATGACGTAATA 59.987 40.741 0.00 0.00 41.22 0.98
1939 2027 6.183360 CCATGTAGGATCGGATATGACGTAAT 60.183 42.308 0.00 0.00 41.22 1.89
1940 2028 5.124936 CCATGTAGGATCGGATATGACGTAA 59.875 44.000 0.00 0.00 41.22 3.18
1941 2029 4.638865 CCATGTAGGATCGGATATGACGTA 59.361 45.833 0.00 0.00 41.22 3.57
1942 2030 3.444034 CCATGTAGGATCGGATATGACGT 59.556 47.826 0.00 0.00 41.22 4.34
1943 2031 3.735208 GCCATGTAGGATCGGATATGACG 60.735 52.174 0.00 0.00 41.22 4.35
1944 2032 3.195610 TGCCATGTAGGATCGGATATGAC 59.804 47.826 0.00 0.00 41.22 3.06
1945 2033 3.440127 TGCCATGTAGGATCGGATATGA 58.560 45.455 0.00 0.00 41.22 2.15
1946 2034 3.893326 TGCCATGTAGGATCGGATATG 57.107 47.619 0.00 0.00 41.22 1.78
1947 2035 4.038042 CGTATGCCATGTAGGATCGGATAT 59.962 45.833 0.00 0.00 41.22 1.63
1948 2036 3.380320 CGTATGCCATGTAGGATCGGATA 59.620 47.826 0.00 0.00 41.22 2.59
1949 2037 2.166459 CGTATGCCATGTAGGATCGGAT 59.834 50.000 0.00 0.00 41.22 4.18
1950 2038 1.544246 CGTATGCCATGTAGGATCGGA 59.456 52.381 0.00 0.00 41.22 4.55
1951 2039 1.544246 TCGTATGCCATGTAGGATCGG 59.456 52.381 0.00 0.00 41.22 4.18
1952 2040 2.416027 CCTCGTATGCCATGTAGGATCG 60.416 54.545 0.00 0.00 41.22 3.69
1953 2041 2.675317 GCCTCGTATGCCATGTAGGATC 60.675 54.545 6.11 0.00 41.22 3.36
1954 2042 1.276421 GCCTCGTATGCCATGTAGGAT 59.724 52.381 6.11 0.00 41.22 3.24
1955 2043 0.679505 GCCTCGTATGCCATGTAGGA 59.320 55.000 6.11 0.00 41.22 2.94
1956 2044 0.392706 TGCCTCGTATGCCATGTAGG 59.607 55.000 0.00 0.00 41.84 3.18
1957 2045 2.289010 TGATGCCTCGTATGCCATGTAG 60.289 50.000 0.00 0.00 0.00 2.74
1958 2046 1.691434 TGATGCCTCGTATGCCATGTA 59.309 47.619 0.00 0.00 0.00 2.29
1959 2047 0.469494 TGATGCCTCGTATGCCATGT 59.531 50.000 0.00 0.00 0.00 3.21
1960 2048 0.870393 GTGATGCCTCGTATGCCATG 59.130 55.000 0.00 0.00 0.00 3.66
1961 2049 0.250467 GGTGATGCCTCGTATGCCAT 60.250 55.000 0.00 0.00 0.00 4.40
1962 2050 1.146041 GGTGATGCCTCGTATGCCA 59.854 57.895 0.00 0.00 0.00 4.92
1963 2051 1.447643 AGGTGATGCCTCGTATGCC 59.552 57.895 0.00 0.00 46.96 4.40
1972 2060 1.602311 CATAGCCTCAAGGTGATGCC 58.398 55.000 0.00 0.00 38.54 4.40
1973 2061 0.950116 GCATAGCCTCAAGGTGATGC 59.050 55.000 16.47 16.47 43.18 3.91
1974 2062 2.336945 TGCATAGCCTCAAGGTGATG 57.663 50.000 0.00 3.41 37.57 3.07
1975 2063 3.220110 CAATGCATAGCCTCAAGGTGAT 58.780 45.455 0.00 0.00 37.57 3.06
1976 2064 2.025981 ACAATGCATAGCCTCAAGGTGA 60.026 45.455 0.00 0.00 37.57 4.02
1977 2065 2.372264 ACAATGCATAGCCTCAAGGTG 58.628 47.619 0.00 0.00 37.57 4.00
1978 2066 2.814805 ACAATGCATAGCCTCAAGGT 57.185 45.000 0.00 0.00 37.57 3.50
1979 2067 3.544684 TGTACAATGCATAGCCTCAAGG 58.455 45.455 0.00 0.00 38.53 3.61
1980 2068 4.556104 GCATGTACAATGCATAGCCTCAAG 60.556 45.833 19.12 0.00 44.00 3.02
1981 2069 3.316029 GCATGTACAATGCATAGCCTCAA 59.684 43.478 19.12 0.00 44.00 3.02
1982 2070 2.880268 GCATGTACAATGCATAGCCTCA 59.120 45.455 19.12 0.00 44.00 3.86
1983 2071 2.227388 GGCATGTACAATGCATAGCCTC 59.773 50.000 22.92 7.94 46.21 4.70
1984 2072 2.233271 GGCATGTACAATGCATAGCCT 58.767 47.619 22.92 0.00 46.21 4.58
1985 2073 1.270550 GGGCATGTACAATGCATAGCC 59.729 52.381 22.92 16.30 46.21 3.93
1986 2074 2.233271 AGGGCATGTACAATGCATAGC 58.767 47.619 22.92 11.42 46.21 2.97
1987 2075 6.384224 CAATTAGGGCATGTACAATGCATAG 58.616 40.000 22.92 8.76 46.21 2.23
1988 2076 5.243507 CCAATTAGGGCATGTACAATGCATA 59.756 40.000 22.92 15.58 46.21 3.14
1989 2077 4.039488 CCAATTAGGGCATGTACAATGCAT 59.961 41.667 22.92 16.26 46.21 3.96
1990 2078 3.384146 CCAATTAGGGCATGTACAATGCA 59.616 43.478 22.92 0.00 46.21 3.96
1991 2079 3.981211 CCAATTAGGGCATGTACAATGC 58.019 45.455 17.01 17.01 43.85 3.56
2003 2091 1.106285 GCTGTCAAGGCCAATTAGGG 58.894 55.000 5.01 0.00 38.09 3.53
2004 2092 2.134789 AGCTGTCAAGGCCAATTAGG 57.865 50.000 5.01 0.00 41.84 2.69
2005 2093 2.945668 GGTAGCTGTCAAGGCCAATTAG 59.054 50.000 5.01 0.00 0.00 1.73
2006 2094 2.307392 TGGTAGCTGTCAAGGCCAATTA 59.693 45.455 5.01 0.00 0.00 1.40
2007 2095 1.075374 TGGTAGCTGTCAAGGCCAATT 59.925 47.619 5.01 0.00 0.00 2.32
2008 2096 0.698238 TGGTAGCTGTCAAGGCCAAT 59.302 50.000 5.01 0.00 0.00 3.16
2009 2097 0.036732 CTGGTAGCTGTCAAGGCCAA 59.963 55.000 5.01 0.00 0.00 4.52
2010 2098 1.679311 CTGGTAGCTGTCAAGGCCA 59.321 57.895 5.01 0.00 0.00 5.36
2027 2115 4.459337 TCTTATCATCGTCATCATACGGCT 59.541 41.667 0.00 0.00 43.05 5.52
2081 2178 1.749258 GTTGAGGTCCATTCCCGGC 60.749 63.158 0.00 0.00 0.00 6.13
2105 2202 1.062002 CAACGCCACCGATGTGAATAC 59.938 52.381 0.00 0.00 45.76 1.89
2286 3132 1.074775 CCCAGCCAACCAACTGCTA 59.925 57.895 0.00 0.00 33.16 3.49
2330 3367 3.134623 TGAACACACCAAGATCTGTGACT 59.865 43.478 17.55 6.17 40.28 3.41
2506 3571 5.689383 TGACGAATTTCTCAAGGGAAAAG 57.311 39.130 0.00 0.00 38.46 2.27
2507 3572 5.592688 ACTTGACGAATTTCTCAAGGGAAAA 59.407 36.000 25.45 4.91 45.24 2.29
2522 3603 7.698970 GTGAATTTCCTTGTTTAACTTGACGAA 59.301 33.333 0.00 0.00 0.00 3.85
2608 3689 0.106769 TGTTCTTGCTTCAGCCACCA 60.107 50.000 0.00 0.00 41.18 4.17
2625 3707 1.202651 ACGTCCTGCTTAACTTGCTGT 60.203 47.619 0.00 0.00 0.00 4.40
2675 3757 2.552315 TCAACTTCCATTCTTCAACGGC 59.448 45.455 0.00 0.00 0.00 5.68
2685 3767 8.260114 ACAAAAAGATCAAACTCAACTTCCATT 58.740 29.630 0.00 0.00 0.00 3.16
2738 3823 8.099537 CAGCTAAGACTCCCATATCAAACATAT 58.900 37.037 0.00 0.00 0.00 1.78
2880 3972 6.225981 AGGAACAAGAGCTTGACAATTTTT 57.774 33.333 16.47 0.00 42.93 1.94
2905 3997 2.624838 AGACAGGCCAACAAAATGACTG 59.375 45.455 5.01 0.00 33.86 3.51
2919 4011 4.222124 TGAAGGGAATAGAAAGACAGGC 57.778 45.455 0.00 0.00 0.00 4.85
2921 4013 5.877564 GGAGTTGAAGGGAATAGAAAGACAG 59.122 44.000 0.00 0.00 0.00 3.51
2926 4018 5.860648 AAGGGAGTTGAAGGGAATAGAAA 57.139 39.130 0.00 0.00 0.00 2.52
2931 4023 2.043115 GGGAAAGGGAGTTGAAGGGAAT 59.957 50.000 0.00 0.00 0.00 3.01
2936 4028 2.206576 CCTGGGAAAGGGAGTTGAAG 57.793 55.000 0.00 0.00 43.15 3.02
2943 4035 4.773281 AGCATTTTGCCTGGGAAAGGGA 62.773 50.000 13.20 0.00 46.52 4.20
2944 4036 2.449920 AGCATTTTGCCTGGGAAAGGG 61.450 52.381 13.20 10.58 46.52 3.95
2945 4037 0.978907 AGCATTTTGCCTGGGAAAGG 59.021 50.000 13.20 10.90 46.52 3.11
2946 4038 2.613725 GGAAGCATTTTGCCTGGGAAAG 60.614 50.000 13.20 4.68 46.52 2.62
2947 4039 1.347378 GGAAGCATTTTGCCTGGGAAA 59.653 47.619 9.49 9.49 46.52 3.13
2948 4040 0.975887 GGAAGCATTTTGCCTGGGAA 59.024 50.000 0.00 0.00 46.52 3.97
2949 4041 0.114954 AGGAAGCATTTTGCCTGGGA 59.885 50.000 0.00 0.00 46.52 4.37
2950 4042 0.248289 CAGGAAGCATTTTGCCTGGG 59.752 55.000 0.00 0.00 46.52 4.45
2951 4043 1.259609 TCAGGAAGCATTTTGCCTGG 58.740 50.000 0.00 0.00 46.52 4.45
2952 4044 3.194968 AGAATCAGGAAGCATTTTGCCTG 59.805 43.478 0.00 0.00 46.52 4.85
2953 4045 3.438183 AGAATCAGGAAGCATTTTGCCT 58.562 40.909 0.00 0.00 46.52 4.75
2954 4046 3.881937 AGAATCAGGAAGCATTTTGCC 57.118 42.857 0.00 0.00 46.52 4.52
2955 4047 4.813027 TCAAGAATCAGGAAGCATTTTGC 58.187 39.130 0.00 0.00 45.46 3.68
2972 4064 9.998106 GCTCCCAGTAAGTATTTTATATCAAGA 57.002 33.333 0.00 0.00 0.00 3.02
2973 4065 9.220767 GGCTCCCAGTAAGTATTTTATATCAAG 57.779 37.037 0.00 0.00 0.00 3.02
2974 4066 8.719596 TGGCTCCCAGTAAGTATTTTATATCAA 58.280 33.333 0.00 0.00 0.00 2.57
2975 4067 8.270137 TGGCTCCCAGTAAGTATTTTATATCA 57.730 34.615 0.00 0.00 0.00 2.15
2976 4068 8.779354 CTGGCTCCCAGTAAGTATTTTATATC 57.221 38.462 3.09 0.00 45.82 1.63
2999 4091 2.390599 ATAAGCACGCACACGCCTG 61.391 57.895 0.00 0.00 45.53 4.85
3000 4092 2.047274 ATAAGCACGCACACGCCT 60.047 55.556 0.00 0.00 45.53 5.52
3001 4093 2.098298 CATAAGCACGCACACGCC 59.902 61.111 0.00 0.00 45.53 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.