Multiple sequence alignment - TraesCS7B01G044500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G044500 chr7B 100.000 4722 0 0 1 4722 44234212 44238933 0.000000e+00 8720.0
1 TraesCS7B01G044500 chr7B 73.520 895 152 64 1741 2577 730809582 730810449 1.300000e-65 261.0
2 TraesCS7B01G044500 chr7B 76.596 329 61 12 1741 2064 731035994 731035677 2.920000e-37 167.0
3 TraesCS7B01G044500 chr7B 98.630 73 1 0 2505 2577 731035158 731035086 3.830000e-26 130.0
4 TraesCS7B01G044500 chr7B 87.234 94 9 3 1411 1502 731036423 731036331 2.320000e-18 104.0
5 TraesCS7B01G044500 chr7A 87.652 1976 128 52 1395 3269 94290173 94292133 0.000000e+00 2191.0
6 TraesCS7B01G044500 chr7A 90.456 943 58 17 418 1360 94289175 94290085 0.000000e+00 1214.0
7 TraesCS7B01G044500 chr7A 85.550 955 81 20 2360 3269 94321099 94322041 0.000000e+00 946.0
8 TraesCS7B01G044500 chr7A 84.740 865 63 41 1769 2577 94323122 94323973 0.000000e+00 802.0
9 TraesCS7B01G044500 chr7A 86.648 719 59 21 651 1360 94310247 94310937 0.000000e+00 761.0
10 TraesCS7B01G044500 chr7A 86.623 613 58 9 2678 3269 94324123 94324732 0.000000e+00 656.0
11 TraesCS7B01G044500 chr7A 89.432 511 36 8 1379 1875 94311041 94311547 3.100000e-176 628.0
12 TraesCS7B01G044500 chr7A 90.779 488 18 6 3267 3738 94292178 94292654 1.120000e-175 627.0
13 TraesCS7B01G044500 chr7A 90.073 413 27 8 3892 4301 630438002 630438403 1.510000e-144 523.0
14 TraesCS7B01G044500 chr7A 87.935 431 31 9 4301 4722 94292770 94293188 5.490000e-134 488.0
15 TraesCS7B01G044500 chr7A 84.600 500 39 12 3265 3738 94322144 94322631 3.330000e-126 462.0
16 TraesCS7B01G044500 chr7A 87.258 361 33 7 1931 2290 94311545 94311893 2.650000e-107 399.0
17 TraesCS7B01G044500 chr7A 75.784 574 94 32 1741 2289 724951362 724951915 1.010000e-61 248.0
18 TraesCS7B01G044500 chr7A 93.939 165 7 1 3265 3429 94324775 94324936 3.650000e-61 246.0
19 TraesCS7B01G044500 chr7A 95.070 142 6 1 3752 3892 94292637 94292778 6.150000e-54 222.0
20 TraesCS7B01G044500 chr7A 97.260 73 2 0 2505 2577 725136164 725136092 1.780000e-24 124.0
21 TraesCS7B01G044500 chr7A 92.000 75 4 2 1426 1499 725137377 725137304 2.320000e-18 104.0
22 TraesCS7B01G044500 chr7D 85.692 1950 123 72 1394 3269 92139846 92141713 0.000000e+00 1912.0
23 TraesCS7B01G044500 chr7D 91.357 995 52 16 376 1360 92138789 92139759 0.000000e+00 1330.0
24 TraesCS7B01G044500 chr7D 88.079 906 85 14 1394 2290 92214700 92215591 0.000000e+00 1053.0
25 TraesCS7B01G044500 chr7D 85.804 958 79 22 2357 3269 92217767 92218712 0.000000e+00 963.0
26 TraesCS7B01G044500 chr7D 84.101 868 63 37 1769 2577 92219801 92220652 0.000000e+00 769.0
27 TraesCS7B01G044500 chr7D 85.675 719 45 19 651 1360 92213903 92214572 0.000000e+00 704.0
28 TraesCS7B01G044500 chr7D 86.645 614 56 6 2678 3269 92220781 92221390 0.000000e+00 656.0
29 TraesCS7B01G044500 chr7D 90.574 488 21 7 3265 3738 92221433 92221909 1.440000e-174 623.0
30 TraesCS7B01G044500 chr7D 90.062 483 25 8 3267 3737 92141758 92142229 5.230000e-169 604.0
31 TraesCS7B01G044500 chr7D 92.533 375 26 2 1 373 92137382 92137756 1.930000e-148 536.0
32 TraesCS7B01G044500 chr7D 84.600 500 41 11 3265 3738 92218815 92219304 9.260000e-127 464.0
33 TraesCS7B01G044500 chr7D 93.662 142 7 2 3752 3892 92142213 92142353 1.330000e-50 211.0
34 TraesCS7B01G044500 chr7D 74.036 674 105 48 1958 2577 628223646 628222989 1.330000e-50 211.0
35 TraesCS7B01G044500 chr7D 74.520 573 101 37 1744 2289 628219619 628219065 1.720000e-49 207.0
36 TraesCS7B01G044500 chr7D 98.630 73 1 0 2505 2577 629118096 629118168 3.830000e-26 130.0
37 TraesCS7B01G044500 chr7D 84.375 96 13 2 2872 2965 628222767 628222672 5.030000e-15 93.5
38 TraesCS7B01G044500 chr3D 92.289 415 26 5 3890 4301 506005788 506006199 6.810000e-163 584.0
39 TraesCS7B01G044500 chr3D 91.084 415 25 8 3893 4301 45667509 45667917 6.910000e-153 551.0
40 TraesCS7B01G044500 chr3D 90.799 413 29 8 3893 4300 134957298 134956890 1.160000e-150 544.0
41 TraesCS7B01G044500 chr2B 84.864 588 59 18 788 1360 794420184 794420756 2.470000e-157 566.0
42 TraesCS7B01G044500 chr4A 90.865 416 32 5 3892 4303 717812583 717812996 1.920000e-153 553.0
43 TraesCS7B01G044500 chr4A 90.670 418 29 8 3890 4300 713975723 713975309 8.930000e-152 547.0
44 TraesCS7B01G044500 chr4D 90.453 419 31 7 3893 4305 490401001 490401416 1.160000e-150 544.0
45 TraesCS7B01G044500 chr6A 84.522 575 58 19 778 1338 121716784 121717341 1.490000e-149 540.0
46 TraesCS7B01G044500 chr6A 90.299 402 27 10 3895 4290 16377100 16377495 2.520000e-142 516.0
47 TraesCS7B01G044500 chr1B 88.056 427 41 9 3876 4301 637373063 637372646 9.130000e-137 497.0
48 TraesCS7B01G044500 chr5A 85.089 503 45 19 796 1285 28601613 28602098 1.980000e-133 486.0
49 TraesCS7B01G044500 chr1A 85.938 320 32 9 778 1097 561003970 561003664 3.520000e-86 329.0
50 TraesCS7B01G044500 chr4B 80.000 95 19 0 1 95 472670388 472670482 2.360000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G044500 chr7B 44234212 44238933 4721 False 8720.000000 8720 100.000000 1 4722 1 chr7B.!!$F1 4721
1 TraesCS7B01G044500 chr7B 730809582 730810449 867 False 261.000000 261 73.520000 1741 2577 1 chr7B.!!$F2 836
2 TraesCS7B01G044500 chr7A 94289175 94293188 4013 False 948.400000 2191 90.378400 418 4722 5 chr7A.!!$F3 4304
3 TraesCS7B01G044500 chr7A 94321099 94324936 3837 False 622.400000 946 87.090400 1769 3738 5 chr7A.!!$F5 1969
4 TraesCS7B01G044500 chr7A 94310247 94311893 1646 False 596.000000 761 87.779333 651 2290 3 chr7A.!!$F4 1639
5 TraesCS7B01G044500 chr7A 724951362 724951915 553 False 248.000000 248 75.784000 1741 2289 1 chr7A.!!$F2 548
6 TraesCS7B01G044500 chr7D 92137382 92142353 4971 False 918.600000 1912 90.661200 1 3892 5 chr7D.!!$F2 3891
7 TraesCS7B01G044500 chr7D 92213903 92221909 8006 False 747.428571 1053 86.496857 651 3738 7 chr7D.!!$F3 3087
8 TraesCS7B01G044500 chr2B 794420184 794420756 572 False 566.000000 566 84.864000 788 1360 1 chr2B.!!$F1 572
9 TraesCS7B01G044500 chr6A 121716784 121717341 557 False 540.000000 540 84.522000 778 1338 1 chr6A.!!$F2 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 1608 0.107459 CTCCTAAACCAGGCAGGCTC 60.107 60.0 0.00 0.0 45.10 4.70 F
1636 2802 0.035343 GGTACAAGGAGAGGGCCAAC 60.035 60.0 6.18 0.0 0.00 3.77 F
2860 6359 0.106769 TTGTGCACACCTGACATGGT 60.107 50.0 21.56 0.0 41.77 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2299 3562 1.357690 CATGCCTGCATAACCAGCG 59.642 57.895 3.98 0.0 34.91 5.18 R
2983 6492 0.674895 GGGCAAGCACTCGATGAAGT 60.675 55.000 0.00 0.0 0.00 3.01 R
4039 7711 0.036388 ACGCCTTCCACGAATGTCAT 60.036 50.000 0.00 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.135721 TCAGCGTCATCCTCATGTCTG 59.864 52.381 0.00 0.00 0.00 3.51
51 52 2.738314 TCATGTCTGTTCACATCAAGCG 59.262 45.455 0.00 0.00 34.60 4.68
62 63 1.820519 ACATCAAGCGGCATCAATGTT 59.179 42.857 1.45 0.00 0.00 2.71
153 155 3.616379 CAGAAGAGACGGCTGAGATTTTC 59.384 47.826 0.00 0.00 0.00 2.29
183 185 2.649034 GGTCGTCAGAGCGGTCAA 59.351 61.111 18.15 1.05 35.00 3.18
200 202 1.597027 AAGACGCCCACAAAGTCCG 60.597 57.895 0.00 0.00 35.65 4.79
210 212 2.943033 CCACAAAGTCCGAGTTTGTCTT 59.057 45.455 25.15 7.66 45.68 3.01
222 224 1.339929 GTTTGTCTTGGATTTGCGGGT 59.660 47.619 0.00 0.00 0.00 5.28
243 246 2.191786 AAATGCATCCGGACCCGTCA 62.192 55.000 6.12 0.23 37.81 4.35
251 254 2.342648 GGACCCGTCAACGAAGCT 59.657 61.111 3.71 0.00 43.02 3.74
254 257 1.406539 GGACCCGTCAACGAAGCTATA 59.593 52.381 3.71 0.00 43.02 1.31
259 262 1.852895 CGTCAACGAAGCTATACAGGC 59.147 52.381 0.00 0.00 43.02 4.85
307 310 1.202417 ACCGCTATGTCCAGACAATCG 60.202 52.381 4.31 8.31 45.41 3.34
308 311 0.855349 CGCTATGTCCAGACAATCGC 59.145 55.000 4.31 6.87 45.41 4.58
329 332 1.272490 GGCTGGTTTAAAGGTCCAAGC 59.728 52.381 0.00 0.00 0.00 4.01
373 376 3.759618 AGCTCCGGTTCTATATGCTCTAC 59.240 47.826 0.00 0.00 0.00 2.59
374 377 3.759618 GCTCCGGTTCTATATGCTCTACT 59.240 47.826 0.00 0.00 0.00 2.57
375 378 4.218852 GCTCCGGTTCTATATGCTCTACTT 59.781 45.833 0.00 0.00 0.00 2.24
376 379 5.415077 GCTCCGGTTCTATATGCTCTACTTA 59.585 44.000 0.00 0.00 0.00 2.24
377 380 6.072064 GCTCCGGTTCTATATGCTCTACTTAA 60.072 42.308 0.00 0.00 0.00 1.85
378 381 7.363094 GCTCCGGTTCTATATGCTCTACTTAAT 60.363 40.741 0.00 0.00 0.00 1.40
379 382 9.175312 CTCCGGTTCTATATGCTCTACTTAATA 57.825 37.037 0.00 0.00 0.00 0.98
502 1539 3.956199 CACATTACCCAAATCAGAGGCAT 59.044 43.478 0.00 0.00 0.00 4.40
543 1580 6.811253 TGTAAATTACACAGTCATTGGTCC 57.189 37.500 1.08 0.00 32.89 4.46
569 1606 1.750780 GCTCCTAAACCAGGCAGGC 60.751 63.158 0.00 0.00 45.10 4.85
571 1608 0.107459 CTCCTAAACCAGGCAGGCTC 60.107 60.000 0.00 0.00 45.10 4.70
572 1609 1.077429 CCTAAACCAGGCAGGCTCC 60.077 63.158 0.00 0.00 43.14 4.70
573 1610 1.685224 CTAAACCAGGCAGGCTCCA 59.315 57.895 0.00 0.00 43.14 3.86
745 1782 2.356125 CCCTACTCCACCATGTTCCTTG 60.356 54.545 0.00 0.00 0.00 3.61
759 1796 3.117701 TGTTCCTTGGGATCAAAGACACA 60.118 43.478 8.55 7.75 29.64 3.72
805 1849 3.442625 TCGGGCAGTAGATCGTATAATGG 59.557 47.826 0.00 0.00 0.00 3.16
917 1961 1.765904 TCTTGTAAGTGTGTGCCCTGA 59.234 47.619 0.00 0.00 0.00 3.86
1026 2077 4.754667 GTCCCGGTTCTGTCGGCC 62.755 72.222 0.00 0.00 45.60 6.13
1106 2157 5.277974 CGCCCAATGTATGATAAGAAACAGG 60.278 44.000 0.00 0.00 0.00 4.00
1164 2216 9.752961 TGAAATTAACTTGGCATCATGATAATG 57.247 29.630 8.15 0.00 31.39 1.90
1165 2217 8.597662 AAATTAACTTGGCATCATGATAATGC 57.402 30.769 8.15 9.61 46.98 3.56
1172 2224 3.176708 GCATCATGATAATGCGATTGGC 58.823 45.455 8.15 0.00 40.05 4.52
1248 2307 1.805869 CAAACTCCAGCTCCAGTGAG 58.194 55.000 0.00 0.00 41.84 3.51
1343 2412 6.649557 GGGGTACATTACATACATACTTGCTC 59.350 42.308 0.00 0.00 0.00 4.26
1436 2599 3.692370 GAGGTTACCGCCGGGCATT 62.692 63.158 20.71 7.24 36.48 3.56
1470 2633 3.665675 GATCTTCACCTGCGCCGGT 62.666 63.158 18.72 18.72 37.93 5.28
1471 2634 3.665675 ATCTTCACCTGCGCCGGTC 62.666 63.158 21.65 0.00 34.29 4.79
1510 2673 1.404851 GGTCTTTCTCGCCTTCTCTGG 60.405 57.143 0.00 0.00 0.00 3.86
1518 2681 1.904032 GCCTTCTCTGGACCCTGAG 59.096 63.158 14.53 14.53 41.45 3.35
1526 2689 2.304180 CTCTGGACCCTGAGTTCATGTT 59.696 50.000 12.99 0.00 31.83 2.71
1527 2690 3.515502 CTCTGGACCCTGAGTTCATGTTA 59.484 47.826 12.99 0.00 31.83 2.41
1528 2691 4.104086 TCTGGACCCTGAGTTCATGTTAT 58.896 43.478 0.00 0.00 31.83 1.89
1530 2693 5.363868 TCTGGACCCTGAGTTCATGTTATAG 59.636 44.000 0.00 0.00 31.83 1.31
1539 2705 7.040062 CCTGAGTTCATGTTATAGTAGCTAGCT 60.040 40.741 23.12 23.12 0.00 3.32
1559 2725 8.384365 GCTAGCTTTACTCTGAATAACTTGTTC 58.616 37.037 7.70 0.00 0.00 3.18
1560 2726 9.646427 CTAGCTTTACTCTGAATAACTTGTTCT 57.354 33.333 0.00 0.00 0.00 3.01
1636 2802 0.035343 GGTACAAGGAGAGGGCCAAC 60.035 60.000 6.18 0.00 0.00 3.77
1645 2811 2.676471 AGGGCCAACGTCAATGCC 60.676 61.111 6.18 8.58 43.26 4.40
1677 2847 8.357402 TCAAAAGGTAATTAAGAAGAAACCAGC 58.643 33.333 0.00 0.00 0.00 4.85
1678 2848 6.835819 AAGGTAATTAAGAAGAAACCAGCC 57.164 37.500 0.00 0.00 0.00 4.85
1679 2849 5.887754 AGGTAATTAAGAAGAAACCAGCCA 58.112 37.500 0.00 0.00 0.00 4.75
1699 2869 5.828299 CCAACAAGTGGTTTCTGAACTTA 57.172 39.130 0.00 0.00 43.20 2.24
1700 2870 6.202516 CCAACAAGTGGTTTCTGAACTTAA 57.797 37.500 0.00 0.00 43.20 1.85
1701 2871 6.033966 CCAACAAGTGGTTTCTGAACTTAAC 58.966 40.000 0.00 0.00 43.20 2.01
1703 2873 7.312899 CAACAAGTGGTTTCTGAACTTAACTT 58.687 34.615 0.00 0.00 37.72 2.66
1704 2874 7.462571 ACAAGTGGTTTCTGAACTTAACTTT 57.537 32.000 0.00 0.00 34.62 2.66
1919 3136 9.448438 AAGAACAATGCAAATAGTATGTCAGTA 57.552 29.630 0.00 0.00 0.00 2.74
2092 3321 0.587285 AGCGTAGGATCATCGTCGAC 59.413 55.000 5.18 5.18 0.00 4.20
2137 3387 4.730657 AGCTGCTTTCTGAAATTTGATCG 58.269 39.130 2.88 0.00 0.00 3.69
2175 3435 0.447801 GCGGTTGCAGGTACATTGAG 59.552 55.000 0.00 0.00 42.15 3.02
2486 5902 9.419297 TGTCATGTGTAAGTTACTAAGATGAAC 57.581 33.333 14.00 9.12 0.00 3.18
2583 6004 5.701290 GTGGCATATGATCCAGGTACTTAAC 59.299 44.000 6.97 0.00 34.60 2.01
2754 6244 2.670414 CGACTTCAACTTCTGGAGATGC 59.330 50.000 0.00 0.00 33.75 3.91
2832 6322 6.147164 CACTGAAGAACGCTTAAGTTATCCAA 59.853 38.462 4.02 0.00 42.12 3.53
2835 6325 7.581476 TGAAGAACGCTTAAGTTATCCAAAAG 58.419 34.615 4.02 0.00 33.61 2.27
2860 6359 0.106769 TTGTGCACACCTGACATGGT 60.107 50.000 21.56 0.00 41.77 3.55
2931 6440 2.252127 AATTTGGCATCGTGGACGCG 62.252 55.000 3.53 3.53 39.60 6.01
2983 6492 5.475909 ACACTCAGAGATCAGGTAACGTAAA 59.524 40.000 3.79 0.00 46.39 2.01
3274 6843 8.060931 TGTTTAGCAAAATATATTGAGCACCA 57.939 30.769 18.93 10.06 31.84 4.17
3303 6933 9.463443 AATTAAAAGGCGCTGACATAATATTTC 57.537 29.630 7.64 0.00 0.00 2.17
3360 7005 6.110411 AGCAACTTACTACACTACAACCAT 57.890 37.500 0.00 0.00 0.00 3.55
3420 7065 1.302752 TGTGGTGGCATGCTCTCAC 60.303 57.895 18.92 20.72 0.00 3.51
3464 7118 1.102154 CGATTGGCATGCAGGGTAAA 58.898 50.000 21.36 3.94 0.00 2.01
3465 7119 1.066002 CGATTGGCATGCAGGGTAAAG 59.934 52.381 21.36 0.00 0.00 1.85
3466 7120 1.410153 GATTGGCATGCAGGGTAAAGG 59.590 52.381 21.36 0.00 0.00 3.11
3467 7121 0.614415 TTGGCATGCAGGGTAAAGGG 60.614 55.000 21.36 0.00 0.00 3.95
3468 7122 1.000359 GGCATGCAGGGTAAAGGGT 60.000 57.895 21.36 0.00 0.00 4.34
3469 7123 0.257616 GGCATGCAGGGTAAAGGGTA 59.742 55.000 21.36 0.00 0.00 3.69
3470 7124 1.341581 GGCATGCAGGGTAAAGGGTAA 60.342 52.381 21.36 0.00 0.00 2.85
3492 7146 2.508526 GGAGAAAAGCAAGGAAGCAGA 58.491 47.619 0.00 0.00 36.85 4.26
3516 7170 5.013495 AGCCAAGGTATGCAGATATGTACAT 59.987 40.000 13.93 13.93 0.00 2.29
3519 7173 7.573843 GCCAAGGTATGCAGATATGTACATTTC 60.574 40.741 14.77 15.51 0.00 2.17
3649 7304 1.606480 CGGCAATACGAGGAGATGCAT 60.606 52.381 0.00 0.00 38.73 3.96
3655 7310 0.179062 ACGAGGAGATGCATGCCTTC 60.179 55.000 16.68 12.33 30.70 3.46
3858 7530 8.349245 CACTGGTTTTGTTAATGATCTACAACA 58.651 33.333 0.00 0.00 32.00 3.33
3892 7564 6.432472 GGGGATTGAGATGAGACCATTTTATC 59.568 42.308 0.00 0.00 32.09 1.75
3893 7565 6.148480 GGGATTGAGATGAGACCATTTTATCG 59.852 42.308 0.00 0.00 32.09 2.92
3894 7566 6.931281 GGATTGAGATGAGACCATTTTATCGA 59.069 38.462 0.00 0.00 32.09 3.59
3895 7567 7.442364 GGATTGAGATGAGACCATTTTATCGAA 59.558 37.037 0.00 0.00 32.09 3.71
3896 7568 8.737168 ATTGAGATGAGACCATTTTATCGAAA 57.263 30.769 0.00 0.00 32.09 3.46
3897 7569 7.776933 TGAGATGAGACCATTTTATCGAAAG 57.223 36.000 0.00 0.00 32.09 2.62
3898 7570 7.331026 TGAGATGAGACCATTTTATCGAAAGT 58.669 34.615 0.00 0.00 32.09 2.66
3899 7571 8.474831 TGAGATGAGACCATTTTATCGAAAGTA 58.525 33.333 0.00 0.00 32.09 2.24
3900 7572 8.649973 AGATGAGACCATTTTATCGAAAGTAC 57.350 34.615 0.00 0.00 32.09 2.73
3901 7573 8.478877 AGATGAGACCATTTTATCGAAAGTACT 58.521 33.333 0.00 0.00 32.09 2.73
3902 7574 9.745880 GATGAGACCATTTTATCGAAAGTACTA 57.254 33.333 0.00 0.00 32.09 1.82
3908 7580 8.827677 ACCATTTTATCGAAAGTACTATTCTGC 58.172 33.333 0.00 0.00 0.00 4.26
3909 7581 9.046296 CCATTTTATCGAAAGTACTATTCTGCT 57.954 33.333 0.00 0.00 0.00 4.24
3911 7583 8.644318 TTTTATCGAAAGTACTATTCTGCTCC 57.356 34.615 0.00 0.00 0.00 4.70
3912 7584 4.650754 TCGAAAGTACTATTCTGCTCCC 57.349 45.455 0.00 0.00 0.00 4.30
3913 7585 3.066342 TCGAAAGTACTATTCTGCTCCCG 59.934 47.826 0.00 0.00 0.00 5.14
3914 7586 3.066342 CGAAAGTACTATTCTGCTCCCGA 59.934 47.826 0.00 0.00 0.00 5.14
3915 7587 4.612943 GAAAGTACTATTCTGCTCCCGAG 58.387 47.826 0.00 0.00 0.00 4.63
3925 7597 4.623814 CTCCCGAGCTCAAATGCA 57.376 55.556 15.40 0.00 34.99 3.96
3926 7598 2.093216 CTCCCGAGCTCAAATGCAC 58.907 57.895 15.40 0.00 34.99 4.57
3927 7599 1.372087 CTCCCGAGCTCAAATGCACC 61.372 60.000 15.40 0.00 34.99 5.01
3928 7600 2.409870 CCCGAGCTCAAATGCACCC 61.410 63.158 15.40 0.00 34.99 4.61
3929 7601 2.753966 CCGAGCTCAAATGCACCCG 61.754 63.158 15.40 0.00 34.99 5.28
3930 7602 2.486966 GAGCTCAAATGCACCCGC 59.513 61.111 9.40 0.00 39.24 6.13
3931 7603 2.034687 AGCTCAAATGCACCCGCT 59.965 55.556 0.00 0.00 39.64 5.52
3932 7604 1.589716 GAGCTCAAATGCACCCGCTT 61.590 55.000 9.40 0.00 39.64 4.68
3933 7605 1.444895 GCTCAAATGCACCCGCTTG 60.445 57.895 0.00 0.00 39.64 4.01
3934 7606 1.865788 GCTCAAATGCACCCGCTTGA 61.866 55.000 0.00 0.00 39.64 3.02
3935 7607 0.597568 CTCAAATGCACCCGCTTGAA 59.402 50.000 0.00 0.00 39.64 2.69
3936 7608 1.203052 CTCAAATGCACCCGCTTGAAT 59.797 47.619 0.00 0.00 39.64 2.57
3937 7609 2.423185 CTCAAATGCACCCGCTTGAATA 59.577 45.455 0.00 0.00 39.64 1.75
3938 7610 2.423185 TCAAATGCACCCGCTTGAATAG 59.577 45.455 0.00 0.00 39.64 1.73
3939 7611 2.128771 AATGCACCCGCTTGAATAGT 57.871 45.000 0.00 0.00 39.64 2.12
3940 7612 3.275617 AATGCACCCGCTTGAATAGTA 57.724 42.857 0.00 0.00 39.64 1.82
3941 7613 2.772077 TGCACCCGCTTGAATAGTAA 57.228 45.000 0.00 0.00 39.64 2.24
3942 7614 3.060736 TGCACCCGCTTGAATAGTAAA 57.939 42.857 0.00 0.00 39.64 2.01
3943 7615 3.413327 TGCACCCGCTTGAATAGTAAAA 58.587 40.909 0.00 0.00 39.64 1.52
3944 7616 4.013728 TGCACCCGCTTGAATAGTAAAAT 58.986 39.130 0.00 0.00 39.64 1.82
3945 7617 4.095782 TGCACCCGCTTGAATAGTAAAATC 59.904 41.667 0.00 0.00 39.64 2.17
3946 7618 4.785341 GCACCCGCTTGAATAGTAAAATCG 60.785 45.833 0.00 0.00 34.30 3.34
3947 7619 4.569162 CACCCGCTTGAATAGTAAAATCGA 59.431 41.667 0.00 0.00 0.00 3.59
3948 7620 5.064198 CACCCGCTTGAATAGTAAAATCGAA 59.936 40.000 0.00 0.00 0.00 3.71
3949 7621 5.644636 ACCCGCTTGAATAGTAAAATCGAAA 59.355 36.000 0.00 0.00 0.00 3.46
3950 7622 6.149807 ACCCGCTTGAATAGTAAAATCGAAAA 59.850 34.615 0.00 0.00 0.00 2.29
3951 7623 7.024768 CCCGCTTGAATAGTAAAATCGAAAAA 58.975 34.615 0.00 0.00 0.00 1.94
4018 7690 5.942325 ACTTTGACAAATGTTTTGTACGC 57.058 34.783 0.05 0.00 31.96 4.42
4019 7691 5.646606 ACTTTGACAAATGTTTTGTACGCT 58.353 33.333 0.05 0.00 31.96 5.07
4020 7692 6.096695 ACTTTGACAAATGTTTTGTACGCTT 58.903 32.000 0.05 0.00 31.96 4.68
4021 7693 5.940603 TTGACAAATGTTTTGTACGCTTG 57.059 34.783 5.66 0.00 31.96 4.01
4022 7694 3.794028 TGACAAATGTTTTGTACGCTTGC 59.206 39.130 5.66 0.00 31.96 4.01
4023 7695 3.775202 ACAAATGTTTTGTACGCTTGCA 58.225 36.364 3.90 0.00 0.00 4.08
4024 7696 4.177026 ACAAATGTTTTGTACGCTTGCAA 58.823 34.783 0.00 0.00 0.00 4.08
4025 7697 4.627467 ACAAATGTTTTGTACGCTTGCAAA 59.373 33.333 0.00 2.32 35.74 3.68
4026 7698 5.120830 ACAAATGTTTTGTACGCTTGCAAAA 59.879 32.000 13.77 13.77 42.80 2.44
4027 7699 5.982465 AATGTTTTGTACGCTTGCAAAAT 57.018 30.435 19.16 4.97 45.42 1.82
4028 7700 5.982465 ATGTTTTGTACGCTTGCAAAATT 57.018 30.435 19.16 9.72 45.42 1.82
4029 7701 5.786401 TGTTTTGTACGCTTGCAAAATTT 57.214 30.435 19.16 0.00 45.42 1.82
4030 7702 5.790547 TGTTTTGTACGCTTGCAAAATTTC 58.209 33.333 19.16 9.58 45.42 2.17
4031 7703 5.348724 TGTTTTGTACGCTTGCAAAATTTCA 59.651 32.000 19.16 11.63 45.42 2.69
4032 7704 5.633996 TTTGTACGCTTGCAAAATTTCAG 57.366 34.783 3.99 0.00 34.74 3.02
4033 7705 3.049206 TGTACGCTTGCAAAATTTCAGC 58.951 40.909 0.00 8.24 0.00 4.26
4034 7706 2.222007 ACGCTTGCAAAATTTCAGCA 57.778 40.000 12.62 12.62 36.32 4.41
4035 7707 1.860326 ACGCTTGCAAAATTTCAGCAC 59.140 42.857 15.38 6.85 38.11 4.40
4036 7708 1.136830 CGCTTGCAAAATTTCAGCACG 60.137 47.619 15.38 14.66 38.11 5.34
4037 7709 2.126467 GCTTGCAAAATTTCAGCACGA 58.874 42.857 19.50 7.59 38.11 4.35
4038 7710 2.539274 GCTTGCAAAATTTCAGCACGAA 59.461 40.909 19.50 7.06 38.11 3.85
4055 7727 3.389687 CGAAATGACATTCGTGGAAGG 57.610 47.619 0.05 0.00 45.32 3.46
4056 7728 2.476185 CGAAATGACATTCGTGGAAGGC 60.476 50.000 0.05 0.00 45.32 4.35
4057 7729 1.086696 AATGACATTCGTGGAAGGCG 58.913 50.000 0.00 0.00 0.00 5.52
4058 7730 0.036388 ATGACATTCGTGGAAGGCGT 60.036 50.000 0.00 0.00 0.00 5.68
4059 7731 0.948623 TGACATTCGTGGAAGGCGTG 60.949 55.000 0.00 0.00 0.00 5.34
4060 7732 1.635663 GACATTCGTGGAAGGCGTGG 61.636 60.000 0.00 0.00 0.00 4.94
4061 7733 2.746277 ATTCGTGGAAGGCGTGGC 60.746 61.111 0.00 0.00 0.00 5.01
4065 7737 2.975799 GTGGAAGGCGTGGCGAAA 60.976 61.111 0.00 0.00 0.00 3.46
4066 7738 2.203224 TGGAAGGCGTGGCGAAAA 60.203 55.556 0.00 0.00 0.00 2.29
4067 7739 1.824329 TGGAAGGCGTGGCGAAAAA 60.824 52.632 0.00 0.00 0.00 1.94
4068 7740 1.175983 TGGAAGGCGTGGCGAAAAAT 61.176 50.000 0.00 0.00 0.00 1.82
4069 7741 0.806241 GGAAGGCGTGGCGAAAAATA 59.194 50.000 0.00 0.00 0.00 1.40
4070 7742 1.200484 GGAAGGCGTGGCGAAAAATAA 59.800 47.619 0.00 0.00 0.00 1.40
4071 7743 2.247637 GAAGGCGTGGCGAAAAATAAC 58.752 47.619 0.00 0.00 0.00 1.89
4072 7744 1.240256 AGGCGTGGCGAAAAATAACA 58.760 45.000 0.00 0.00 0.00 2.41
4073 7745 1.609555 AGGCGTGGCGAAAAATAACAA 59.390 42.857 0.00 0.00 0.00 2.83
4074 7746 2.034812 AGGCGTGGCGAAAAATAACAAA 59.965 40.909 0.00 0.00 0.00 2.83
4075 7747 2.795470 GGCGTGGCGAAAAATAACAAAA 59.205 40.909 0.00 0.00 0.00 2.44
4076 7748 3.430556 GGCGTGGCGAAAAATAACAAAAT 59.569 39.130 0.00 0.00 0.00 1.82
4077 7749 4.433674 GGCGTGGCGAAAAATAACAAAATC 60.434 41.667 0.00 0.00 0.00 2.17
4078 7750 4.717064 GCGTGGCGAAAAATAACAAAATCG 60.717 41.667 0.00 0.00 0.00 3.34
4079 7751 4.380382 CGTGGCGAAAAATAACAAAATCGT 59.620 37.500 0.00 0.00 33.18 3.73
4080 7752 5.440971 CGTGGCGAAAAATAACAAAATCGTC 60.441 40.000 0.00 0.00 35.64 4.20
4081 7753 5.399892 GTGGCGAAAAATAACAAAATCGTCA 59.600 36.000 0.00 0.00 41.85 4.35
4082 7754 5.399892 TGGCGAAAAATAACAAAATCGTCAC 59.600 36.000 0.00 0.00 39.61 3.67
4083 7755 5.627780 GGCGAAAAATAACAAAATCGTCACT 59.372 36.000 0.00 0.00 35.23 3.41
4084 7756 6.183359 GGCGAAAAATAACAAAATCGTCACTC 60.183 38.462 0.00 0.00 35.23 3.51
4085 7757 6.183359 GCGAAAAATAACAAAATCGTCACTCC 60.183 38.462 0.00 0.00 33.18 3.85
4086 7758 6.853872 CGAAAAATAACAAAATCGTCACTCCA 59.146 34.615 0.00 0.00 0.00 3.86
4087 7759 7.377397 CGAAAAATAACAAAATCGTCACTCCAA 59.623 33.333 0.00 0.00 0.00 3.53
4088 7760 8.934507 AAAAATAACAAAATCGTCACTCCAAA 57.065 26.923 0.00 0.00 0.00 3.28
4089 7761 8.934507 AAAATAACAAAATCGTCACTCCAAAA 57.065 26.923 0.00 0.00 0.00 2.44
4090 7762 9.541143 AAAATAACAAAATCGTCACTCCAAAAT 57.459 25.926 0.00 0.00 0.00 1.82
4091 7763 8.519492 AATAACAAAATCGTCACTCCAAAATG 57.481 30.769 0.00 0.00 0.00 2.32
4092 7764 5.514274 ACAAAATCGTCACTCCAAAATGT 57.486 34.783 0.00 0.00 0.00 2.71
4093 7765 5.280945 ACAAAATCGTCACTCCAAAATGTG 58.719 37.500 0.00 0.00 35.68 3.21
4094 7766 5.163561 ACAAAATCGTCACTCCAAAATGTGT 60.164 36.000 0.00 0.00 35.82 3.72
4095 7767 5.514274 AAATCGTCACTCCAAAATGTGTT 57.486 34.783 0.00 0.00 35.82 3.32
4096 7768 4.749245 ATCGTCACTCCAAAATGTGTTC 57.251 40.909 0.00 0.00 35.82 3.18
4097 7769 3.536570 TCGTCACTCCAAAATGTGTTCA 58.463 40.909 0.00 0.00 35.82 3.18
4098 7770 3.942115 TCGTCACTCCAAAATGTGTTCAA 59.058 39.130 0.00 0.00 35.82 2.69
4099 7771 4.396478 TCGTCACTCCAAAATGTGTTCAAA 59.604 37.500 0.00 0.00 35.82 2.69
4100 7772 5.098893 CGTCACTCCAAAATGTGTTCAAAA 58.901 37.500 0.00 0.00 35.82 2.44
4101 7773 5.004345 CGTCACTCCAAAATGTGTTCAAAAC 59.996 40.000 0.00 0.00 35.82 2.43
4102 7774 6.099341 GTCACTCCAAAATGTGTTCAAAACT 58.901 36.000 0.00 0.00 35.82 2.66
4103 7775 7.254852 GTCACTCCAAAATGTGTTCAAAACTA 58.745 34.615 0.00 0.00 35.82 2.24
4104 7776 7.432252 GTCACTCCAAAATGTGTTCAAAACTAG 59.568 37.037 0.00 0.00 35.82 2.57
4105 7777 6.198966 CACTCCAAAATGTGTTCAAAACTAGC 59.801 38.462 0.00 0.00 0.00 3.42
4106 7778 6.127479 ACTCCAAAATGTGTTCAAAACTAGCA 60.127 34.615 0.00 0.00 0.00 3.49
4107 7779 6.815089 TCCAAAATGTGTTCAAAACTAGCAT 58.185 32.000 0.00 0.00 0.00 3.79
4108 7780 7.271511 TCCAAAATGTGTTCAAAACTAGCATT 58.728 30.769 0.00 0.00 33.76 3.56
4109 7781 7.768120 TCCAAAATGTGTTCAAAACTAGCATTT 59.232 29.630 0.00 0.00 38.81 2.32
4110 7782 8.397148 CCAAAATGTGTTCAAAACTAGCATTTT 58.603 29.630 17.11 17.11 42.26 1.82
4111 7783 9.771915 CAAAATGTGTTCAAAACTAGCATTTTT 57.228 25.926 18.61 0.00 41.20 1.94
4112 7784 9.771915 AAAATGTGTTCAAAACTAGCATTTTTG 57.228 25.926 17.11 9.63 40.84 2.44
4113 7785 6.900568 TGTGTTCAAAACTAGCATTTTTGG 57.099 33.333 13.90 0.00 42.03 3.28
4114 7786 6.634805 TGTGTTCAAAACTAGCATTTTTGGA 58.365 32.000 13.90 5.81 42.03 3.53
4115 7787 7.099764 TGTGTTCAAAACTAGCATTTTTGGAA 58.900 30.769 13.90 4.03 42.03 3.53
4116 7788 7.064016 TGTGTTCAAAACTAGCATTTTTGGAAC 59.936 33.333 13.27 13.27 42.03 3.62
4117 7789 7.064016 GTGTTCAAAACTAGCATTTTTGGAACA 59.936 33.333 16.73 16.73 42.03 3.18
4118 7790 7.768120 TGTTCAAAACTAGCATTTTTGGAACAT 59.232 29.630 16.73 0.00 42.03 2.71
4119 7791 7.945033 TCAAAACTAGCATTTTTGGAACATC 57.055 32.000 13.90 0.00 42.03 3.06
4120 7792 6.640499 TCAAAACTAGCATTTTTGGAACATCG 59.360 34.615 13.90 0.00 42.03 3.84
4121 7793 5.957842 AACTAGCATTTTTGGAACATCGA 57.042 34.783 0.00 0.00 39.30 3.59
4122 7794 6.515272 AACTAGCATTTTTGGAACATCGAT 57.485 33.333 0.00 0.00 39.30 3.59
4123 7795 6.515272 ACTAGCATTTTTGGAACATCGATT 57.485 33.333 0.00 0.00 39.30 3.34
4124 7796 6.924111 ACTAGCATTTTTGGAACATCGATTT 58.076 32.000 0.00 0.00 39.30 2.17
4125 7797 7.378181 ACTAGCATTTTTGGAACATCGATTTT 58.622 30.769 0.00 0.00 39.30 1.82
4126 7798 7.872483 ACTAGCATTTTTGGAACATCGATTTTT 59.128 29.630 0.00 0.00 39.30 1.94
4147 7819 2.296831 TTTTGTCACGACTTCCACGA 57.703 45.000 0.00 0.00 34.70 4.35
4148 7820 2.296831 TTTGTCACGACTTCCACGAA 57.703 45.000 0.00 0.00 34.70 3.85
4149 7821 2.519377 TTGTCACGACTTCCACGAAT 57.481 45.000 0.00 0.00 34.70 3.34
4150 7822 1.778334 TGTCACGACTTCCACGAATG 58.222 50.000 0.00 0.00 34.70 2.67
4151 7823 1.067974 TGTCACGACTTCCACGAATGT 59.932 47.619 0.00 0.00 34.70 2.71
4152 7824 2.132762 GTCACGACTTCCACGAATGTT 58.867 47.619 0.00 0.00 34.70 2.71
4153 7825 3.243468 TGTCACGACTTCCACGAATGTTA 60.243 43.478 0.00 0.00 34.70 2.41
4154 7826 3.924686 GTCACGACTTCCACGAATGTTAT 59.075 43.478 0.00 0.00 34.70 1.89
4155 7827 4.387862 GTCACGACTTCCACGAATGTTATT 59.612 41.667 0.00 0.00 34.70 1.40
4156 7828 4.992319 TCACGACTTCCACGAATGTTATTT 59.008 37.500 0.00 0.00 34.70 1.40
4157 7829 5.119588 TCACGACTTCCACGAATGTTATTTC 59.880 40.000 0.00 0.00 34.70 2.17
4158 7830 4.992319 ACGACTTCCACGAATGTTATTTCA 59.008 37.500 0.00 0.00 34.70 2.69
4159 7831 5.642063 ACGACTTCCACGAATGTTATTTCAT 59.358 36.000 0.00 0.00 34.70 2.57
4160 7832 5.959527 CGACTTCCACGAATGTTATTTCATG 59.040 40.000 0.00 0.00 0.00 3.07
4161 7833 5.640732 ACTTCCACGAATGTTATTTCATGC 58.359 37.500 0.00 0.00 0.00 4.06
4162 7834 5.415701 ACTTCCACGAATGTTATTTCATGCT 59.584 36.000 0.00 0.00 0.00 3.79
4163 7835 5.233957 TCCACGAATGTTATTTCATGCTG 57.766 39.130 0.00 0.00 0.00 4.41
4164 7836 4.940654 TCCACGAATGTTATTTCATGCTGA 59.059 37.500 0.00 0.00 0.00 4.26
4165 7837 5.414144 TCCACGAATGTTATTTCATGCTGAA 59.586 36.000 0.00 0.00 34.03 3.02
4178 7850 7.966246 TTTCATGCTGAAATTTTACAAGCAT 57.034 28.000 18.30 18.30 41.02 3.79
4180 7852 5.789710 ATGCTGAAATTTTACAAGCATGC 57.210 34.783 21.09 10.51 39.61 4.06
4181 7853 4.629092 TGCTGAAATTTTACAAGCATGCA 58.371 34.783 21.98 0.00 0.00 3.96
4182 7854 5.055144 TGCTGAAATTTTACAAGCATGCAA 58.945 33.333 21.98 4.19 0.00 4.08
4183 7855 5.526479 TGCTGAAATTTTACAAGCATGCAAA 59.474 32.000 21.98 11.51 0.00 3.68
4184 7856 6.037940 TGCTGAAATTTTACAAGCATGCAAAA 59.962 30.769 21.98 17.23 36.49 2.44
4185 7857 6.357766 GCTGAAATTTTACAAGCATGCAAAAC 59.642 34.615 21.98 6.76 35.25 2.43
4186 7858 7.312657 TGAAATTTTACAAGCATGCAAAACA 57.687 28.000 21.98 9.10 35.25 2.83
4187 7859 7.755591 TGAAATTTTACAAGCATGCAAAACAA 58.244 26.923 21.98 5.59 35.25 2.83
4188 7860 8.404000 TGAAATTTTACAAGCATGCAAAACAAT 58.596 25.926 21.98 7.75 35.25 2.71
4189 7861 9.235537 GAAATTTTACAAGCATGCAAAACAATT 57.764 25.926 21.98 13.10 35.25 2.32
4190 7862 8.563289 AATTTTACAAGCATGCAAAACAATTG 57.437 26.923 21.98 15.52 35.25 2.32
4191 7863 6.674694 TTTACAAGCATGCAAAACAATTGT 57.325 29.167 21.98 20.25 37.32 2.71
4192 7864 4.799419 ACAAGCATGCAAAACAATTGTC 57.201 36.364 21.98 0.00 31.56 3.18
4193 7865 4.190001 ACAAGCATGCAAAACAATTGTCA 58.810 34.783 21.98 5.83 31.56 3.58
4194 7866 4.271533 ACAAGCATGCAAAACAATTGTCAG 59.728 37.500 21.98 6.06 31.56 3.51
4195 7867 4.325028 AGCATGCAAAACAATTGTCAGA 57.675 36.364 21.98 0.00 0.00 3.27
4196 7868 4.304110 AGCATGCAAAACAATTGTCAGAG 58.696 39.130 21.98 3.89 0.00 3.35
4197 7869 4.053295 GCATGCAAAACAATTGTCAGAGT 58.947 39.130 14.21 0.00 0.00 3.24
4198 7870 4.508861 GCATGCAAAACAATTGTCAGAGTT 59.491 37.500 14.21 0.00 0.00 3.01
4199 7871 5.006941 GCATGCAAAACAATTGTCAGAGTTT 59.993 36.000 14.21 5.47 35.87 2.66
4200 7872 6.200665 GCATGCAAAACAATTGTCAGAGTTTA 59.799 34.615 14.21 0.00 33.45 2.01
4201 7873 7.558137 CATGCAAAACAATTGTCAGAGTTTAC 58.442 34.615 12.39 3.97 33.45 2.01
4202 7874 6.039616 TGCAAAACAATTGTCAGAGTTTACC 58.960 36.000 12.39 4.10 33.45 2.85
4203 7875 5.173131 GCAAAACAATTGTCAGAGTTTACCG 59.827 40.000 12.39 0.00 33.45 4.02
4204 7876 6.262601 CAAAACAATTGTCAGAGTTTACCGT 58.737 36.000 12.39 0.00 33.45 4.83
4205 7877 7.411274 CAAAACAATTGTCAGAGTTTACCGTA 58.589 34.615 12.39 0.00 33.45 4.02
4206 7878 7.556733 AAACAATTGTCAGAGTTTACCGTAA 57.443 32.000 12.39 0.00 32.88 3.18
4207 7879 7.556733 AACAATTGTCAGAGTTTACCGTAAA 57.443 32.000 12.39 0.00 0.00 2.01
4208 7880 7.556733 ACAATTGTCAGAGTTTACCGTAAAA 57.443 32.000 4.92 0.00 0.00 1.52
4209 7881 7.987649 ACAATTGTCAGAGTTTACCGTAAAAA 58.012 30.769 4.92 0.00 0.00 1.94
4256 7928 8.640063 ATTTACTATTTTTCCGGGTTTACTGT 57.360 30.769 0.00 0.00 0.00 3.55
4257 7929 8.462589 TTTACTATTTTTCCGGGTTTACTGTT 57.537 30.769 0.00 0.00 0.00 3.16
4258 7930 6.964807 ACTATTTTTCCGGGTTTACTGTTT 57.035 33.333 0.00 0.00 0.00 2.83
4259 7931 9.566432 TTACTATTTTTCCGGGTTTACTGTTTA 57.434 29.630 0.00 0.00 0.00 2.01
4260 7932 8.640063 ACTATTTTTCCGGGTTTACTGTTTAT 57.360 30.769 0.00 0.00 0.00 1.40
4261 7933 8.517056 ACTATTTTTCCGGGTTTACTGTTTATG 58.483 33.333 0.00 0.00 0.00 1.90
4262 7934 6.956202 TTTTTCCGGGTTTACTGTTTATGA 57.044 33.333 0.00 0.00 0.00 2.15
4263 7935 6.563222 TTTTCCGGGTTTACTGTTTATGAG 57.437 37.500 0.00 0.00 0.00 2.90
4264 7936 4.210724 TCCGGGTTTACTGTTTATGAGG 57.789 45.455 0.00 0.00 0.00 3.86
4265 7937 3.054948 TCCGGGTTTACTGTTTATGAGGG 60.055 47.826 0.00 0.00 0.00 4.30
4266 7938 3.054948 CCGGGTTTACTGTTTATGAGGGA 60.055 47.826 0.00 0.00 0.00 4.20
4267 7939 4.189231 CGGGTTTACTGTTTATGAGGGAG 58.811 47.826 0.00 0.00 0.00 4.30
4268 7940 3.945921 GGGTTTACTGTTTATGAGGGAGC 59.054 47.826 0.00 0.00 0.00 4.70
4269 7941 4.566907 GGGTTTACTGTTTATGAGGGAGCA 60.567 45.833 0.00 0.00 0.00 4.26
4270 7942 5.193679 GGTTTACTGTTTATGAGGGAGCAT 58.806 41.667 0.00 0.00 0.00 3.79
4271 7943 5.652452 GGTTTACTGTTTATGAGGGAGCATT 59.348 40.000 0.00 0.00 0.00 3.56
4272 7944 6.152831 GGTTTACTGTTTATGAGGGAGCATTT 59.847 38.462 0.00 0.00 0.00 2.32
4273 7945 6.757897 TTACTGTTTATGAGGGAGCATTTG 57.242 37.500 0.00 0.00 0.00 2.32
4274 7946 4.922206 ACTGTTTATGAGGGAGCATTTGA 58.078 39.130 0.00 0.00 0.00 2.69
4275 7947 4.946157 ACTGTTTATGAGGGAGCATTTGAG 59.054 41.667 0.00 0.00 0.00 3.02
4276 7948 3.696051 TGTTTATGAGGGAGCATTTGAGC 59.304 43.478 0.00 0.00 0.00 4.26
4283 7955 4.950479 AGCATTTGAGCTCCGGAG 57.050 55.556 27.83 27.83 42.18 4.63
4301 7973 3.618690 GAGCATATACTCCATGTCCCC 57.381 52.381 0.00 0.00 0.00 4.81
4302 7974 2.906389 GAGCATATACTCCATGTCCCCA 59.094 50.000 0.00 0.00 0.00 4.96
4303 7975 3.521126 GAGCATATACTCCATGTCCCCAT 59.479 47.826 0.00 0.00 0.00 4.00
4304 7976 3.918912 AGCATATACTCCATGTCCCCATT 59.081 43.478 0.00 0.00 0.00 3.16
4305 7977 4.354987 AGCATATACTCCATGTCCCCATTT 59.645 41.667 0.00 0.00 0.00 2.32
4306 7978 5.079643 GCATATACTCCATGTCCCCATTTT 58.920 41.667 0.00 0.00 0.00 1.82
4307 7979 6.045459 AGCATATACTCCATGTCCCCATTTTA 59.955 38.462 0.00 0.00 0.00 1.52
4308 7980 6.891908 GCATATACTCCATGTCCCCATTTTAT 59.108 38.462 0.00 0.00 0.00 1.40
4363 8048 4.935352 TTGCTTTTTAGTGGCATGAAGT 57.065 36.364 0.00 0.00 35.84 3.01
4485 8198 1.732417 TGCTTCGCACATTGGCAACA 61.732 50.000 0.00 0.00 38.35 3.33
4524 8237 6.647895 ACACTTGCCAAGATGATTTTCATTTC 59.352 34.615 12.25 0.00 37.20 2.17
4548 8261 6.260050 TCAGAATAAAGACGCAAAACAAGTCT 59.740 34.615 0.00 0.00 46.01 3.24
4550 8263 6.260050 AGAATAAAGACGCAAAACAAGTCTGA 59.740 34.615 0.00 0.00 43.60 3.27
4551 8264 3.951979 AAGACGCAAAACAAGTCTGAG 57.048 42.857 0.00 0.00 43.60 3.35
4559 8272 6.691388 ACGCAAAACAAGTCTGAGTTTAAATC 59.309 34.615 0.00 0.00 36.98 2.17
4638 8351 7.987458 TCAGCCACATAAAATAAAGTCTAGAGG 59.013 37.037 0.00 0.00 0.00 3.69
4639 8352 7.987458 CAGCCACATAAAATAAAGTCTAGAGGA 59.013 37.037 0.00 0.00 0.00 3.71
4641 8354 9.343539 GCCACATAAAATAAAGTCTAGAGGATT 57.656 33.333 0.00 0.00 0.00 3.01
4650 8363 5.360649 AAGTCTAGAGGATTACAAAGGCC 57.639 43.478 0.00 0.00 0.00 5.19
4651 8364 3.385111 AGTCTAGAGGATTACAAAGGCCG 59.615 47.826 0.00 0.00 0.00 6.13
4652 8365 2.698797 TCTAGAGGATTACAAAGGCCGG 59.301 50.000 0.00 0.00 0.00 6.13
4653 8366 0.546598 AGAGGATTACAAAGGCCGGG 59.453 55.000 2.18 0.00 0.00 5.73
4654 8367 0.544697 GAGGATTACAAAGGCCGGGA 59.455 55.000 2.18 0.00 0.00 5.14
4655 8368 0.546598 AGGATTACAAAGGCCGGGAG 59.453 55.000 2.18 0.00 0.00 4.30
4680 8876 2.378806 CAACAAGAGCAAGCAGTTTCG 58.621 47.619 0.00 0.00 0.00 3.46
4714 8910 2.165437 GCGGATTTCCTATTTGCCACAA 59.835 45.455 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.670087 CGCTGACGAACATGACCTCTT 60.670 52.381 0.00 0.00 43.93 2.85
38 39 0.804364 TGATGCCGCTTGATGTGAAC 59.196 50.000 0.00 0.00 0.00 3.18
51 52 2.202783 GCGGCCAACATTGATGCC 60.203 61.111 2.24 2.70 40.54 4.40
165 167 2.142357 CTTGACCGCTCTGACGACCA 62.142 60.000 0.00 0.00 34.06 4.02
166 168 1.444553 CTTGACCGCTCTGACGACC 60.445 63.158 0.00 0.00 34.06 4.79
183 185 2.030562 CGGACTTTGTGGGCGTCT 59.969 61.111 0.00 0.00 0.00 4.18
200 202 2.351738 CCCGCAAATCCAAGACAAACTC 60.352 50.000 0.00 0.00 0.00 3.01
210 212 1.895798 TGCATTTTACCCGCAAATCCA 59.104 42.857 0.00 0.00 31.46 3.41
222 224 0.253610 ACGGGTCCGGATGCATTTTA 59.746 50.000 7.81 0.00 44.69 1.52
243 246 0.104304 CGGGCCTGTATAGCTTCGTT 59.896 55.000 2.29 0.00 0.00 3.85
251 254 1.708341 GTCTAACCCGGGCCTGTATA 58.292 55.000 24.08 3.42 0.00 1.47
254 257 3.387947 CGTCTAACCCGGGCCTGT 61.388 66.667 24.08 6.04 0.00 4.00
299 302 0.036765 TAAACCAGCCGCGATTGTCT 60.037 50.000 8.23 0.00 0.00 3.41
307 310 0.891904 TGGACCTTTAAACCAGCCGC 60.892 55.000 0.00 0.00 0.00 6.53
308 311 1.539827 CTTGGACCTTTAAACCAGCCG 59.460 52.381 0.00 0.00 35.08 5.52
329 332 5.417580 GCTCTCATGGTTAGGGTATCTCTAG 59.582 48.000 0.00 0.00 0.00 2.43
543 1580 0.251916 TGGTTTAGGAGCCGGTGATG 59.748 55.000 1.90 0.00 0.00 3.07
569 1606 1.377725 GGCATGGTGTGGAGTGGAG 60.378 63.158 0.00 0.00 0.00 3.86
571 1608 2.178876 TACGGCATGGTGTGGAGTGG 62.179 60.000 0.00 0.00 0.00 4.00
572 1609 0.107703 ATACGGCATGGTGTGGAGTG 60.108 55.000 0.00 0.00 0.00 3.51
573 1610 1.491668 TATACGGCATGGTGTGGAGT 58.508 50.000 0.00 0.00 0.00 3.85
745 1782 0.798776 CAGCGTGTGTCTTTGATCCC 59.201 55.000 0.00 0.00 0.00 3.85
759 1796 1.924320 GACGACTCTGTAGCCAGCGT 61.924 60.000 0.00 0.00 39.29 5.07
805 1849 0.385029 TGGTGCGATTTATGCCATGC 59.615 50.000 0.00 0.00 0.00 4.06
940 1990 9.696917 ATTTCAAGAAAGAACACCAATATCAAC 57.303 29.630 1.48 0.00 33.32 3.18
1026 2077 1.545582 CCCAACAACACCATGGCTAAG 59.454 52.381 13.04 2.16 32.71 2.18
1164 2216 4.033932 TGCATATTATACATCGCCAATCGC 59.966 41.667 0.00 0.00 38.27 4.58
1165 2217 5.717038 TGCATATTATACATCGCCAATCG 57.283 39.130 0.00 0.00 40.15 3.34
1172 2224 6.367149 ACACTGAAGCTGCATATTATACATCG 59.633 38.462 0.00 0.00 0.00 3.84
1173 2225 7.360691 CCACACTGAAGCTGCATATTATACATC 60.361 40.741 0.00 0.00 0.00 3.06
1180 2232 1.747355 GCCACACTGAAGCTGCATATT 59.253 47.619 0.00 0.00 0.00 1.28
1181 2233 1.386533 GCCACACTGAAGCTGCATAT 58.613 50.000 0.00 0.00 0.00 1.78
1248 2307 2.438075 CTGCCCAGGAAGCTGCTC 60.438 66.667 1.00 0.00 0.00 4.26
1281 2346 0.819259 TGCCACTGCTGTTCCTGAAC 60.819 55.000 3.07 3.07 38.71 3.18
1369 2503 3.623703 TGCAGAAATGCAGACCATGTAT 58.376 40.909 0.00 0.00 40.23 2.29
1510 2673 6.041069 AGCTACTATAACATGAACTCAGGGTC 59.959 42.308 0.00 0.00 30.95 4.46
1518 2681 9.968870 AGTAAAGCTAGCTACTATAACATGAAC 57.031 33.333 19.70 1.73 0.00 3.18
1528 2691 9.629878 AGTTATTCAGAGTAAAGCTAGCTACTA 57.370 33.333 19.70 10.00 0.00 1.82
1530 2693 9.026074 CAAGTTATTCAGAGTAAAGCTAGCTAC 57.974 37.037 19.70 13.81 0.00 3.58
1539 2705 7.990886 ACACCAGAACAAGTTATTCAGAGTAAA 59.009 33.333 0.00 0.00 0.00 2.01
1636 2802 2.772568 TTTGAACAGTGGCATTGACG 57.227 45.000 17.47 0.00 0.00 4.35
1678 2848 6.852664 AGTTAAGTTCAGAAACCACTTGTTG 58.147 36.000 0.00 0.00 37.23 3.33
1679 2849 7.462571 AAGTTAAGTTCAGAAACCACTTGTT 57.537 32.000 0.00 0.00 39.43 2.83
1699 2869 5.995282 TGTCATCTGACCGTTATGAAAAGTT 59.005 36.000 7.81 0.00 44.15 2.66
1700 2870 5.408604 GTGTCATCTGACCGTTATGAAAAGT 59.591 40.000 7.81 0.00 44.15 2.66
1701 2871 5.639506 AGTGTCATCTGACCGTTATGAAAAG 59.360 40.000 7.81 0.00 44.15 2.27
1703 2873 4.929211 CAGTGTCATCTGACCGTTATGAAA 59.071 41.667 7.81 0.00 44.15 2.69
1704 2874 4.494484 CAGTGTCATCTGACCGTTATGAA 58.506 43.478 7.81 0.00 44.15 2.57
1919 3136 4.333690 AGAAACTCTGAAGATTGCATGCT 58.666 39.130 20.33 0.00 0.00 3.79
1944 3173 2.646930 TCATCATTCACACATCCCAGC 58.353 47.619 0.00 0.00 0.00 4.85
2092 3321 1.694150 ACGTGGACTGGATATGGATGG 59.306 52.381 0.00 0.00 0.00 3.51
2137 3387 1.374758 CCGCCCACAGTCTCTCAAC 60.375 63.158 0.00 0.00 0.00 3.18
2295 3558 1.430632 CCTGCATAACCAGCGCTTG 59.569 57.895 7.50 7.21 33.85 4.01
2296 3559 2.409870 GCCTGCATAACCAGCGCTT 61.410 57.895 7.50 0.00 33.85 4.68
2298 3561 2.484062 ATGCCTGCATAACCAGCGC 61.484 57.895 0.00 0.00 34.49 5.92
2299 3562 1.357690 CATGCCTGCATAACCAGCG 59.642 57.895 3.98 0.00 34.91 5.18
2339 3644 7.812309 CATGCATGCCAGATTAATTAATCAG 57.188 36.000 30.52 24.74 43.43 2.90
2372 5756 2.821366 CCTGCATCCGTCCTGTGC 60.821 66.667 0.00 0.00 39.26 4.57
2583 6004 6.741992 TGACAAAATCAACATGCTACTAGG 57.258 37.500 0.00 0.00 33.02 3.02
2754 6244 3.544682 TCAAGTAATTGCGTACATCGACG 59.455 43.478 0.00 0.00 45.70 5.12
2766 6256 9.599866 TTGTATGTATCTCTGGTCAAGTAATTG 57.400 33.333 0.00 0.00 0.00 2.32
2832 6322 2.485426 CAGGTGTGCACAATCGATCTTT 59.515 45.455 23.59 0.00 0.00 2.52
2835 6325 1.394917 GTCAGGTGTGCACAATCGATC 59.605 52.381 23.59 7.80 0.00 3.69
2882 6391 1.963515 GGTCCTGCCAGTTCAAAACAT 59.036 47.619 0.00 0.00 37.17 2.71
2931 6440 2.684374 TGCATGATGGACAACATACTGC 59.316 45.455 0.00 0.00 42.77 4.40
2983 6492 0.674895 GGGCAAGCACTCGATGAAGT 60.675 55.000 0.00 0.00 0.00 3.01
3123 6644 8.557864 TGAGCCAAATTAATTCAATGTTTGTTG 58.442 29.630 0.10 0.00 0.00 3.33
3124 6646 8.674263 TGAGCCAAATTAATTCAATGTTTGTT 57.326 26.923 0.10 0.00 0.00 2.83
3131 6653 9.169592 CTCCATTTTGAGCCAAATTAATTCAAT 57.830 29.630 0.10 0.00 33.19 2.57
3132 6654 8.373981 TCTCCATTTTGAGCCAAATTAATTCAA 58.626 29.630 0.10 0.00 33.19 2.69
3140 6662 6.211986 TCTTGATTCTCCATTTTGAGCCAAAT 59.788 34.615 1.89 0.00 33.19 2.32
3231 6753 7.099120 GCTAAACATCTTCCCAAATGAACATT 58.901 34.615 0.00 0.00 0.00 2.71
3287 6917 6.132056 GTGCTTGAGAAATATTATGTCAGCG 58.868 40.000 0.00 0.00 0.00 5.18
3303 6933 5.868043 TGATGTATGACTTTGTGCTTGAG 57.132 39.130 0.00 0.00 0.00 3.02
3402 7047 1.302752 GTGAGAGCATGCCACCACA 60.303 57.895 15.66 6.23 0.00 4.17
3403 7048 0.679002 ATGTGAGAGCATGCCACCAC 60.679 55.000 15.66 18.69 0.00 4.16
3404 7049 0.911053 TATGTGAGAGCATGCCACCA 59.089 50.000 15.66 6.74 0.00 4.17
3405 7050 1.134280 AGTATGTGAGAGCATGCCACC 60.134 52.381 15.66 3.99 32.95 4.61
3420 7065 6.702329 AGGGAGTAACACAAAAGAGAGTATG 58.298 40.000 0.00 0.00 0.00 2.39
3464 7118 2.552373 CCTTGCTTTTCTCCGTTACCCT 60.552 50.000 0.00 0.00 0.00 4.34
3465 7119 1.810755 CCTTGCTTTTCTCCGTTACCC 59.189 52.381 0.00 0.00 0.00 3.69
3466 7120 2.774687 TCCTTGCTTTTCTCCGTTACC 58.225 47.619 0.00 0.00 0.00 2.85
3467 7121 3.365064 GCTTCCTTGCTTTTCTCCGTTAC 60.365 47.826 0.00 0.00 0.00 2.50
3468 7122 2.812011 GCTTCCTTGCTTTTCTCCGTTA 59.188 45.455 0.00 0.00 0.00 3.18
3469 7123 1.609072 GCTTCCTTGCTTTTCTCCGTT 59.391 47.619 0.00 0.00 0.00 4.44
3470 7124 1.239347 GCTTCCTTGCTTTTCTCCGT 58.761 50.000 0.00 0.00 0.00 4.69
3492 7146 4.347876 TGTACATATCTGCATACCTTGGCT 59.652 41.667 0.00 0.00 0.00 4.75
3649 7304 1.623311 TCCATTCTTGAGTCGAAGGCA 59.377 47.619 0.00 0.00 0.00 4.75
3655 7310 2.096496 GGCATTGTCCATTCTTGAGTCG 59.904 50.000 0.00 0.00 0.00 4.18
3761 7422 9.924650 ACTCCTTGTGTAACTAACTAAATACAG 57.075 33.333 0.00 0.00 38.04 2.74
3765 7426 9.924650 CAGTACTCCTTGTGTAACTAACTAAAT 57.075 33.333 0.00 0.00 38.04 1.40
3766 7427 7.869429 GCAGTACTCCTTGTGTAACTAACTAAA 59.131 37.037 0.00 0.00 38.04 1.85
3767 7428 7.014518 TGCAGTACTCCTTGTGTAACTAACTAA 59.985 37.037 0.00 0.00 38.04 2.24
3768 7429 6.491062 TGCAGTACTCCTTGTGTAACTAACTA 59.509 38.462 0.00 0.00 38.04 2.24
3769 7430 5.303589 TGCAGTACTCCTTGTGTAACTAACT 59.696 40.000 0.00 0.00 38.04 2.24
3858 7530 0.631753 TCTCAATCCCCTCTCGGTCT 59.368 55.000 0.00 0.00 0.00 3.85
3871 7543 8.737168 TTTCGATAAAATGGTCTCATCTCAAT 57.263 30.769 0.00 0.00 32.24 2.57
3892 7564 3.066342 TCGGGAGCAGAATAGTACTTTCG 59.934 47.826 0.00 3.68 0.00 3.46
3893 7565 4.612943 CTCGGGAGCAGAATAGTACTTTC 58.387 47.826 0.00 5.26 0.00 2.62
3894 7566 4.657436 CTCGGGAGCAGAATAGTACTTT 57.343 45.455 0.00 0.00 0.00 2.66
3908 7580 1.372087 GGTGCATTTGAGCTCGGGAG 61.372 60.000 9.64 0.30 34.99 4.30
3909 7581 1.377202 GGTGCATTTGAGCTCGGGA 60.377 57.895 9.64 0.00 34.99 5.14
3910 7582 2.409870 GGGTGCATTTGAGCTCGGG 61.410 63.158 9.64 0.00 34.99 5.14
3911 7583 2.753966 CGGGTGCATTTGAGCTCGG 61.754 63.158 9.64 0.00 34.99 4.63
3912 7584 2.787249 CGGGTGCATTTGAGCTCG 59.213 61.111 9.64 0.00 34.99 5.03
3913 7585 1.589716 AAGCGGGTGCATTTGAGCTC 61.590 55.000 6.82 6.82 46.23 4.09
3914 7586 1.604593 AAGCGGGTGCATTTGAGCT 60.605 52.632 0.00 0.00 46.23 4.09
3915 7587 1.444895 CAAGCGGGTGCATTTGAGC 60.445 57.895 0.00 0.00 46.23 4.26
3916 7588 0.597568 TTCAAGCGGGTGCATTTGAG 59.402 50.000 0.00 0.00 46.23 3.02
3917 7589 1.255882 ATTCAAGCGGGTGCATTTGA 58.744 45.000 0.00 0.00 46.23 2.69
3918 7590 2.164219 ACTATTCAAGCGGGTGCATTTG 59.836 45.455 0.00 0.00 46.23 2.32
3919 7591 2.446435 ACTATTCAAGCGGGTGCATTT 58.554 42.857 0.00 0.00 46.23 2.32
3920 7592 2.128771 ACTATTCAAGCGGGTGCATT 57.871 45.000 0.00 0.00 46.23 3.56
3921 7593 3.275617 TTACTATTCAAGCGGGTGCAT 57.724 42.857 0.00 0.00 46.23 3.96
3922 7594 2.772077 TTACTATTCAAGCGGGTGCA 57.228 45.000 0.00 0.00 46.23 4.57
3923 7595 4.598062 GATTTTACTATTCAAGCGGGTGC 58.402 43.478 0.00 0.00 43.24 5.01
3924 7596 4.569162 TCGATTTTACTATTCAAGCGGGTG 59.431 41.667 0.00 0.00 30.45 4.61
3925 7597 4.761975 TCGATTTTACTATTCAAGCGGGT 58.238 39.130 0.00 0.00 30.45 5.28
3926 7598 5.728351 TTCGATTTTACTATTCAAGCGGG 57.272 39.130 0.00 0.00 30.45 6.13
3992 7664 8.536407 GCGTACAAAACATTTGTCAAAGTTTAT 58.464 29.630 18.15 14.24 33.45 1.40
3993 7665 7.755822 AGCGTACAAAACATTTGTCAAAGTTTA 59.244 29.630 18.15 7.60 33.45 2.01
3994 7666 6.588373 AGCGTACAAAACATTTGTCAAAGTTT 59.412 30.769 11.40 14.74 35.87 2.66
3995 7667 6.096695 AGCGTACAAAACATTTGTCAAAGTT 58.903 32.000 11.40 5.89 34.11 2.66
3996 7668 5.646606 AGCGTACAAAACATTTGTCAAAGT 58.353 33.333 11.40 0.09 34.11 2.66
3997 7669 6.402017 CAAGCGTACAAAACATTTGTCAAAG 58.598 36.000 11.40 0.66 34.11 2.77
3998 7670 5.220303 GCAAGCGTACAAAACATTTGTCAAA 60.220 36.000 11.40 0.00 34.11 2.69
3999 7671 4.266502 GCAAGCGTACAAAACATTTGTCAA 59.733 37.500 11.40 0.00 34.11 3.18
4000 7672 3.794028 GCAAGCGTACAAAACATTTGTCA 59.206 39.130 11.40 0.00 34.11 3.58
4001 7673 3.794028 TGCAAGCGTACAAAACATTTGTC 59.206 39.130 11.40 4.22 34.11 3.18
4002 7674 3.775202 TGCAAGCGTACAAAACATTTGT 58.225 36.364 12.53 12.53 36.49 2.83
4003 7675 4.768659 TTGCAAGCGTACAAAACATTTG 57.231 36.364 0.00 1.47 0.00 2.32
4004 7676 5.786401 TTTTGCAAGCGTACAAAACATTT 57.214 30.435 6.67 0.00 39.99 2.32
4005 7677 5.982465 ATTTTGCAAGCGTACAAAACATT 57.018 30.435 12.12 0.00 45.55 2.71
4006 7678 5.982465 AATTTTGCAAGCGTACAAAACAT 57.018 30.435 12.12 3.38 45.55 2.71
4007 7679 5.348724 TGAAATTTTGCAAGCGTACAAAACA 59.651 32.000 12.12 4.78 45.55 2.83
4008 7680 5.790547 TGAAATTTTGCAAGCGTACAAAAC 58.209 33.333 12.12 2.51 45.55 2.43
4009 7681 5.501574 GCTGAAATTTTGCAAGCGTACAAAA 60.502 36.000 12.24 12.24 46.44 2.44
4010 7682 4.026145 GCTGAAATTTTGCAAGCGTACAAA 60.026 37.500 0.00 0.00 34.11 2.83
4011 7683 3.489047 GCTGAAATTTTGCAAGCGTACAA 59.511 39.130 0.00 0.00 0.00 2.41
4012 7684 3.049206 GCTGAAATTTTGCAAGCGTACA 58.951 40.909 0.00 0.00 0.00 2.90
4013 7685 3.049206 TGCTGAAATTTTGCAAGCGTAC 58.951 40.909 14.60 0.00 33.48 3.67
4014 7686 3.049206 GTGCTGAAATTTTGCAAGCGTA 58.951 40.909 17.39 0.00 38.50 4.42
4015 7687 1.860326 GTGCTGAAATTTTGCAAGCGT 59.140 42.857 17.39 0.00 38.50 5.07
4016 7688 1.136830 CGTGCTGAAATTTTGCAAGCG 60.137 47.619 17.39 14.51 38.50 4.68
4017 7689 2.126467 TCGTGCTGAAATTTTGCAAGC 58.874 42.857 19.73 14.43 38.50 4.01
4018 7690 4.775440 TTTCGTGCTGAAATTTTGCAAG 57.225 36.364 17.39 18.27 41.59 4.01
4028 7700 3.454042 CGAATGTCATTTCGTGCTGAA 57.546 42.857 0.00 0.00 42.63 3.02
4036 7708 2.476185 CGCCTTCCACGAATGTCATTTC 60.476 50.000 0.00 0.00 0.00 2.17
4037 7709 1.468520 CGCCTTCCACGAATGTCATTT 59.531 47.619 0.00 0.00 0.00 2.32
4038 7710 1.086696 CGCCTTCCACGAATGTCATT 58.913 50.000 0.00 0.00 0.00 2.57
4039 7711 0.036388 ACGCCTTCCACGAATGTCAT 60.036 50.000 0.00 0.00 0.00 3.06
4040 7712 0.948623 CACGCCTTCCACGAATGTCA 60.949 55.000 0.00 0.00 0.00 3.58
4041 7713 1.635663 CCACGCCTTCCACGAATGTC 61.636 60.000 0.00 0.00 0.00 3.06
4042 7714 1.671054 CCACGCCTTCCACGAATGT 60.671 57.895 0.00 0.00 0.00 2.71
4043 7715 3.039202 GCCACGCCTTCCACGAATG 62.039 63.158 0.00 0.00 0.00 2.67
4044 7716 2.746277 GCCACGCCTTCCACGAAT 60.746 61.111 0.00 0.00 0.00 3.34
4048 7720 2.065906 TTTTTCGCCACGCCTTCCAC 62.066 55.000 0.00 0.00 0.00 4.02
4049 7721 1.175983 ATTTTTCGCCACGCCTTCCA 61.176 50.000 0.00 0.00 0.00 3.53
4050 7722 0.806241 TATTTTTCGCCACGCCTTCC 59.194 50.000 0.00 0.00 0.00 3.46
4051 7723 2.247637 GTTATTTTTCGCCACGCCTTC 58.752 47.619 0.00 0.00 0.00 3.46
4052 7724 1.609555 TGTTATTTTTCGCCACGCCTT 59.390 42.857 0.00 0.00 0.00 4.35
4053 7725 1.240256 TGTTATTTTTCGCCACGCCT 58.760 45.000 0.00 0.00 0.00 5.52
4054 7726 2.053282 TTGTTATTTTTCGCCACGCC 57.947 45.000 0.00 0.00 0.00 5.68
4055 7727 4.624156 GATTTTGTTATTTTTCGCCACGC 58.376 39.130 0.00 0.00 0.00 5.34
4056 7728 4.380382 ACGATTTTGTTATTTTTCGCCACG 59.620 37.500 0.00 0.00 0.00 4.94
4057 7729 5.399892 TGACGATTTTGTTATTTTTCGCCAC 59.600 36.000 0.00 0.00 0.00 5.01
4058 7730 5.399892 GTGACGATTTTGTTATTTTTCGCCA 59.600 36.000 0.00 0.00 0.00 5.69
4059 7731 5.627780 AGTGACGATTTTGTTATTTTTCGCC 59.372 36.000 0.00 0.00 0.00 5.54
4060 7732 6.183359 GGAGTGACGATTTTGTTATTTTTCGC 60.183 38.462 0.00 0.00 0.00 4.70
4061 7733 6.853872 TGGAGTGACGATTTTGTTATTTTTCG 59.146 34.615 0.00 0.00 0.00 3.46
4062 7734 8.568732 TTGGAGTGACGATTTTGTTATTTTTC 57.431 30.769 0.00 0.00 0.00 2.29
4063 7735 8.934507 TTTGGAGTGACGATTTTGTTATTTTT 57.065 26.923 0.00 0.00 0.00 1.94
4064 7736 8.934507 TTTTGGAGTGACGATTTTGTTATTTT 57.065 26.923 0.00 0.00 0.00 1.82
4065 7737 8.977505 CATTTTGGAGTGACGATTTTGTTATTT 58.022 29.630 0.00 0.00 0.00 1.40
4066 7738 8.141268 ACATTTTGGAGTGACGATTTTGTTATT 58.859 29.630 0.00 0.00 0.00 1.40
4067 7739 7.594758 CACATTTTGGAGTGACGATTTTGTTAT 59.405 33.333 0.00 0.00 37.97 1.89
4068 7740 6.915300 CACATTTTGGAGTGACGATTTTGTTA 59.085 34.615 0.00 0.00 37.97 2.41
4069 7741 5.748152 CACATTTTGGAGTGACGATTTTGTT 59.252 36.000 0.00 0.00 37.97 2.83
4070 7742 5.163561 ACACATTTTGGAGTGACGATTTTGT 60.164 36.000 0.00 0.00 39.03 2.83
4071 7743 5.280945 ACACATTTTGGAGTGACGATTTTG 58.719 37.500 0.00 0.00 39.03 2.44
4072 7744 5.514274 ACACATTTTGGAGTGACGATTTT 57.486 34.783 0.00 0.00 39.03 1.82
4073 7745 5.067153 TGAACACATTTTGGAGTGACGATTT 59.933 36.000 0.00 0.00 39.03 2.17
4074 7746 4.578516 TGAACACATTTTGGAGTGACGATT 59.421 37.500 0.00 0.00 39.03 3.34
4075 7747 4.133820 TGAACACATTTTGGAGTGACGAT 58.866 39.130 0.00 0.00 39.03 3.73
4076 7748 3.536570 TGAACACATTTTGGAGTGACGA 58.463 40.909 0.00 0.00 39.03 4.20
4077 7749 3.961477 TGAACACATTTTGGAGTGACG 57.039 42.857 0.00 0.00 39.03 4.35
4078 7750 6.099341 AGTTTTGAACACATTTTGGAGTGAC 58.901 36.000 0.00 0.00 39.03 3.67
4079 7751 6.279513 AGTTTTGAACACATTTTGGAGTGA 57.720 33.333 0.00 0.00 39.03 3.41
4080 7752 6.198966 GCTAGTTTTGAACACATTTTGGAGTG 59.801 38.462 0.00 0.00 41.40 3.51
4081 7753 6.127479 TGCTAGTTTTGAACACATTTTGGAGT 60.127 34.615 0.00 0.00 0.00 3.85
4082 7754 6.272318 TGCTAGTTTTGAACACATTTTGGAG 58.728 36.000 0.00 0.00 0.00 3.86
4083 7755 6.214191 TGCTAGTTTTGAACACATTTTGGA 57.786 33.333 0.00 0.00 0.00 3.53
4084 7756 7.481275 AATGCTAGTTTTGAACACATTTTGG 57.519 32.000 0.00 0.00 31.80 3.28
4085 7757 9.771915 AAAAATGCTAGTTTTGAACACATTTTG 57.228 25.926 20.25 0.00 43.18 2.44
4086 7758 9.771915 CAAAAATGCTAGTTTTGAACACATTTT 57.228 25.926 17.11 17.11 44.94 1.82
4087 7759 8.397148 CCAAAAATGCTAGTTTTGAACACATTT 58.603 29.630 17.40 6.14 44.94 2.32
4088 7760 7.768120 TCCAAAAATGCTAGTTTTGAACACATT 59.232 29.630 17.40 0.99 44.94 2.71
4089 7761 7.271511 TCCAAAAATGCTAGTTTTGAACACAT 58.728 30.769 17.40 0.00 44.94 3.21
4090 7762 6.634805 TCCAAAAATGCTAGTTTTGAACACA 58.365 32.000 17.40 0.00 44.94 3.72
4091 7763 7.064016 TGTTCCAAAAATGCTAGTTTTGAACAC 59.936 33.333 17.40 12.61 44.94 3.32
4092 7764 7.099764 TGTTCCAAAAATGCTAGTTTTGAACA 58.900 30.769 17.40 18.68 44.94 3.18
4093 7765 7.532682 TGTTCCAAAAATGCTAGTTTTGAAC 57.467 32.000 17.40 17.29 44.94 3.18
4094 7766 7.168972 CGATGTTCCAAAAATGCTAGTTTTGAA 59.831 33.333 17.40 10.35 44.94 2.69
4095 7767 6.640499 CGATGTTCCAAAAATGCTAGTTTTGA 59.360 34.615 17.40 6.61 44.94 2.69
4096 7768 6.640499 TCGATGTTCCAAAAATGCTAGTTTTG 59.360 34.615 12.01 12.01 42.85 2.44
4097 7769 6.744112 TCGATGTTCCAAAAATGCTAGTTTT 58.256 32.000 0.00 0.00 32.94 2.43
4098 7770 6.325919 TCGATGTTCCAAAAATGCTAGTTT 57.674 33.333 0.00 0.00 0.00 2.66
4099 7771 5.957842 TCGATGTTCCAAAAATGCTAGTT 57.042 34.783 0.00 0.00 0.00 2.24
4100 7772 6.515272 AATCGATGTTCCAAAAATGCTAGT 57.485 33.333 0.00 0.00 0.00 2.57
4101 7773 7.816945 AAAATCGATGTTCCAAAAATGCTAG 57.183 32.000 0.00 0.00 0.00 3.42
4127 7799 2.619147 TCGTGGAAGTCGTGACAAAAA 58.381 42.857 2.44 0.00 0.00 1.94
4128 7800 2.296831 TCGTGGAAGTCGTGACAAAA 57.703 45.000 2.44 0.00 0.00 2.44
4129 7801 2.296831 TTCGTGGAAGTCGTGACAAA 57.703 45.000 2.44 0.00 0.00 2.83
4130 7802 2.131972 CATTCGTGGAAGTCGTGACAA 58.868 47.619 2.44 0.00 0.00 3.18
4131 7803 1.067974 ACATTCGTGGAAGTCGTGACA 59.932 47.619 2.44 0.00 0.00 3.58
4132 7804 1.779569 ACATTCGTGGAAGTCGTGAC 58.220 50.000 0.00 0.00 0.00 3.67
4133 7805 2.519377 AACATTCGTGGAAGTCGTGA 57.481 45.000 0.00 0.00 0.00 4.35
4134 7806 4.921470 AATAACATTCGTGGAAGTCGTG 57.079 40.909 0.00 0.00 0.00 4.35
4135 7807 4.992319 TGAAATAACATTCGTGGAAGTCGT 59.008 37.500 0.00 0.00 31.80 4.34
4136 7808 5.524511 TGAAATAACATTCGTGGAAGTCG 57.475 39.130 0.00 0.00 31.80 4.18
4137 7809 5.739161 GCATGAAATAACATTCGTGGAAGTC 59.261 40.000 0.00 0.00 43.44 3.01
4138 7810 5.415701 AGCATGAAATAACATTCGTGGAAGT 59.584 36.000 0.00 0.00 43.44 3.01
4139 7811 5.740569 CAGCATGAAATAACATTCGTGGAAG 59.259 40.000 0.00 0.00 43.44 3.46
4140 7812 5.414144 TCAGCATGAAATAACATTCGTGGAA 59.586 36.000 0.00 0.00 45.97 3.53
4141 7813 4.940654 TCAGCATGAAATAACATTCGTGGA 59.059 37.500 0.00 0.00 45.97 4.02
4142 7814 5.233957 TCAGCATGAAATAACATTCGTGG 57.766 39.130 0.00 0.00 45.97 4.94
4158 7830 5.239351 TGCATGCTTGTAAAATTTCAGCAT 58.761 33.333 20.33 15.92 41.43 3.79
4159 7831 4.629092 TGCATGCTTGTAAAATTTCAGCA 58.371 34.783 20.33 13.56 35.24 4.41
4160 7832 5.594724 TTGCATGCTTGTAAAATTTCAGC 57.405 34.783 20.33 0.00 0.00 4.26
4161 7833 7.408123 TGTTTTGCATGCTTGTAAAATTTCAG 58.592 30.769 24.16 0.00 45.19 3.02
4162 7834 7.312657 TGTTTTGCATGCTTGTAAAATTTCA 57.687 28.000 24.16 17.25 45.19 2.69
4163 7835 8.785468 ATTGTTTTGCATGCTTGTAAAATTTC 57.215 26.923 24.16 15.49 45.19 2.17
4164 7836 9.021863 CAATTGTTTTGCATGCTTGTAAAATTT 57.978 25.926 24.16 17.24 45.19 1.82
4165 7837 8.189460 ACAATTGTTTTGCATGCTTGTAAAATT 58.811 25.926 24.16 15.39 45.19 1.82
4166 7838 7.705214 ACAATTGTTTTGCATGCTTGTAAAAT 58.295 26.923 24.16 11.41 45.19 1.82
4167 7839 7.081526 ACAATTGTTTTGCATGCTTGTAAAA 57.918 28.000 20.33 19.76 42.66 1.52
4168 7840 6.314648 TGACAATTGTTTTGCATGCTTGTAAA 59.685 30.769 20.33 11.02 35.92 2.01
4169 7841 5.814188 TGACAATTGTTTTGCATGCTTGTAA 59.186 32.000 20.33 9.31 30.17 2.41
4170 7842 5.354767 TGACAATTGTTTTGCATGCTTGTA 58.645 33.333 20.33 5.72 30.17 2.41
4171 7843 4.190001 TGACAATTGTTTTGCATGCTTGT 58.810 34.783 20.33 18.01 31.61 3.16
4172 7844 4.508492 TCTGACAATTGTTTTGCATGCTTG 59.492 37.500 20.33 14.89 0.00 4.01
4173 7845 4.695396 TCTGACAATTGTTTTGCATGCTT 58.305 34.783 20.33 0.00 0.00 3.91
4174 7846 4.202182 ACTCTGACAATTGTTTTGCATGCT 60.202 37.500 20.33 0.00 0.00 3.79
4175 7847 4.053295 ACTCTGACAATTGTTTTGCATGC 58.947 39.130 13.36 11.82 0.00 4.06
4176 7848 6.592798 AAACTCTGACAATTGTTTTGCATG 57.407 33.333 13.36 4.92 29.64 4.06
4177 7849 6.701400 GGTAAACTCTGACAATTGTTTTGCAT 59.299 34.615 13.36 0.18 34.88 3.96
4178 7850 6.039616 GGTAAACTCTGACAATTGTTTTGCA 58.960 36.000 13.36 5.04 34.88 4.08
4179 7851 5.173131 CGGTAAACTCTGACAATTGTTTTGC 59.827 40.000 13.36 11.60 34.88 3.68
4180 7852 6.262601 ACGGTAAACTCTGACAATTGTTTTG 58.737 36.000 13.36 6.33 34.88 2.44
4181 7853 6.445357 ACGGTAAACTCTGACAATTGTTTT 57.555 33.333 13.36 11.02 34.88 2.43
4182 7854 7.556733 TTACGGTAAACTCTGACAATTGTTT 57.443 32.000 13.36 4.38 36.69 2.83
4183 7855 7.556733 TTTACGGTAAACTCTGACAATTGTT 57.443 32.000 13.36 0.00 0.00 2.83
4184 7856 7.556733 TTTTACGGTAAACTCTGACAATTGT 57.443 32.000 11.78 11.78 0.00 2.71
4230 7902 9.737844 ACAGTAAACCCGGAAAAATAGTAAATA 57.262 29.630 0.73 0.00 0.00 1.40
4231 7903 8.640063 ACAGTAAACCCGGAAAAATAGTAAAT 57.360 30.769 0.73 0.00 0.00 1.40
4232 7904 8.462589 AACAGTAAACCCGGAAAAATAGTAAA 57.537 30.769 0.73 0.00 0.00 2.01
4233 7905 8.462589 AAACAGTAAACCCGGAAAAATAGTAA 57.537 30.769 0.73 0.00 0.00 2.24
4234 7906 9.737844 ATAAACAGTAAACCCGGAAAAATAGTA 57.262 29.630 0.73 0.00 0.00 1.82
4235 7907 6.964807 AAACAGTAAACCCGGAAAAATAGT 57.035 33.333 0.73 0.00 0.00 2.12
4236 7908 8.732531 TCATAAACAGTAAACCCGGAAAAATAG 58.267 33.333 0.73 0.00 0.00 1.73
4237 7909 8.632906 TCATAAACAGTAAACCCGGAAAAATA 57.367 30.769 0.73 0.00 0.00 1.40
4238 7910 7.309560 CCTCATAAACAGTAAACCCGGAAAAAT 60.310 37.037 0.73 0.00 0.00 1.82
4239 7911 6.016108 CCTCATAAACAGTAAACCCGGAAAAA 60.016 38.462 0.73 0.00 0.00 1.94
4240 7912 5.474189 CCTCATAAACAGTAAACCCGGAAAA 59.526 40.000 0.73 0.00 0.00 2.29
4241 7913 5.005094 CCTCATAAACAGTAAACCCGGAAA 58.995 41.667 0.73 0.00 0.00 3.13
4242 7914 4.566070 CCCTCATAAACAGTAAACCCGGAA 60.566 45.833 0.73 0.00 0.00 4.30
4243 7915 3.054948 CCCTCATAAACAGTAAACCCGGA 60.055 47.826 0.73 0.00 0.00 5.14
4244 7916 3.054948 TCCCTCATAAACAGTAAACCCGG 60.055 47.826 0.00 0.00 0.00 5.73
4245 7917 4.189231 CTCCCTCATAAACAGTAAACCCG 58.811 47.826 0.00 0.00 0.00 5.28
4246 7918 3.945921 GCTCCCTCATAAACAGTAAACCC 59.054 47.826 0.00 0.00 0.00 4.11
4247 7919 4.585879 TGCTCCCTCATAAACAGTAAACC 58.414 43.478 0.00 0.00 0.00 3.27
4248 7920 6.759497 AATGCTCCCTCATAAACAGTAAAC 57.241 37.500 0.00 0.00 0.00 2.01
4249 7921 6.945435 TCAAATGCTCCCTCATAAACAGTAAA 59.055 34.615 0.00 0.00 0.00 2.01
4250 7922 6.480763 TCAAATGCTCCCTCATAAACAGTAA 58.519 36.000 0.00 0.00 0.00 2.24
4251 7923 6.061022 TCAAATGCTCCCTCATAAACAGTA 57.939 37.500 0.00 0.00 0.00 2.74
4252 7924 4.922206 TCAAATGCTCCCTCATAAACAGT 58.078 39.130 0.00 0.00 0.00 3.55
4253 7925 4.201990 GCTCAAATGCTCCCTCATAAACAG 60.202 45.833 0.00 0.00 0.00 3.16
4254 7926 3.696051 GCTCAAATGCTCCCTCATAAACA 59.304 43.478 0.00 0.00 0.00 2.83
4255 7927 3.950395 AGCTCAAATGCTCCCTCATAAAC 59.050 43.478 0.00 0.00 39.34 2.01
4256 7928 4.240881 AGCTCAAATGCTCCCTCATAAA 57.759 40.909 0.00 0.00 39.34 1.40
4257 7929 3.939740 AGCTCAAATGCTCCCTCATAA 57.060 42.857 0.00 0.00 39.34 1.90
4280 7952 4.332171 TGGGGACATGGAGTATATGCTCC 61.332 52.174 27.79 27.79 45.15 4.70
4281 7953 2.906389 TGGGGACATGGAGTATATGCTC 59.094 50.000 12.04 12.04 33.40 4.26
4282 7954 2.990195 TGGGGACATGGAGTATATGCT 58.010 47.619 0.00 0.00 33.40 3.79
4327 7999 9.762933 ACTAAAAAGCAAATGTACAACAATGAT 57.237 25.926 0.00 0.00 0.00 2.45
4352 8037 3.243367 TGCAAGTAAACACTTCATGCCAC 60.243 43.478 0.00 0.00 0.00 5.01
4448 8161 6.871562 CGAAGCACATAATCTACATGTCTTC 58.128 40.000 0.00 4.13 37.29 2.87
4491 8204 5.129634 TCATCTTGGCAAGTGTTAAGTCAA 58.870 37.500 25.39 3.84 0.00 3.18
4524 8237 6.358030 CAGACTTGTTTTGCGTCTTTATTCTG 59.642 38.462 0.00 0.00 35.95 3.02
4548 8261 8.527810 GGTGTGGGATTTATTGATTTAAACTCA 58.472 33.333 0.00 0.00 0.00 3.41
4550 8263 8.429237 TGGTGTGGGATTTATTGATTTAAACT 57.571 30.769 0.00 0.00 0.00 2.66
4551 8264 7.277760 GCTGGTGTGGGATTTATTGATTTAAAC 59.722 37.037 0.00 0.00 0.00 2.01
4559 8272 3.355378 TCTGCTGGTGTGGGATTTATTG 58.645 45.455 0.00 0.00 0.00 1.90
4610 8323 9.905713 TCTAGACTTTATTTTATGTGGCTGAAT 57.094 29.630 0.00 0.00 0.00 2.57
4638 8351 1.436983 CGCTCCCGGCCTTTGTAATC 61.437 60.000 0.00 0.00 37.74 1.75
4639 8352 1.451387 CGCTCCCGGCCTTTGTAAT 60.451 57.895 0.00 0.00 37.74 1.89
4641 8354 4.770874 GCGCTCCCGGCCTTTGTA 62.771 66.667 0.00 0.00 37.74 2.41
4652 8365 3.435186 GCTCTTGTTGGGCGCTCC 61.435 66.667 3.94 6.36 0.00 4.70
4653 8366 2.192608 CTTGCTCTTGTTGGGCGCTC 62.193 60.000 7.64 2.47 0.00 5.03
4654 8367 2.203337 TTGCTCTTGTTGGGCGCT 60.203 55.556 7.64 0.00 0.00 5.92
4655 8368 2.256461 CTTGCTCTTGTTGGGCGC 59.744 61.111 0.00 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.