Multiple sequence alignment - TraesCS7B01G044300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G044300 chr7B 100.000 2192 0 0 1 2192 43950106 43947915 0.000000e+00 4048.0
1 TraesCS7B01G044300 chr7B 90.065 926 36 13 1031 1949 43896940 43896064 0.000000e+00 1149.0
2 TraesCS7B01G044300 chr7B 86.296 467 61 3 1000 1464 592357444 592357909 2.510000e-139 505.0
3 TraesCS7B01G044300 chr7B 94.142 239 13 1 1955 2192 43897320 43897082 1.600000e-96 363.0
4 TraesCS7B01G044300 chr7B 97.297 37 1 0 1912 1948 43897406 43897370 1.820000e-06 63.9
5 TraesCS7B01G044300 chr7D 92.276 1968 108 26 1 1948 91053793 91055736 0.000000e+00 2752.0
6 TraesCS7B01G044300 chr7D 89.916 238 10 2 1955 2192 91055779 91056002 5.920000e-76 294.0
7 TraesCS7B01G044300 chr7A 87.218 1197 86 32 998 2159 93064873 93066037 0.000000e+00 1301.0
8 TraesCS7B01G044300 chr7A 91.505 930 58 14 1 917 93063898 93064819 0.000000e+00 1260.0
9 TraesCS7B01G044300 chr7A 84.648 469 65 4 1000 1464 633033179 633033644 5.510000e-126 460.0
10 TraesCS7B01G044300 chr1A 93.023 473 33 0 997 1469 364040179 364039707 0.000000e+00 691.0
11 TraesCS7B01G044300 chr1D 92.641 462 34 0 999 1460 291799253 291798792 0.000000e+00 665.0
12 TraesCS7B01G044300 chr1D 91.939 459 37 0 999 1457 291841763 291842221 0.000000e+00 643.0
13 TraesCS7B01G044300 chr1B 92.040 402 32 0 999 1400 392837550 392837951 1.140000e-157 566.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G044300 chr7B 43947915 43950106 2191 True 4048.0 4048 100.000000 1 2192 1 chr7B.!!$R1 2191
1 TraesCS7B01G044300 chr7B 43896064 43897406 1342 True 525.3 1149 93.834667 1031 2192 3 chr7B.!!$R2 1161
2 TraesCS7B01G044300 chr7D 91053793 91056002 2209 False 1523.0 2752 91.096000 1 2192 2 chr7D.!!$F1 2191
3 TraesCS7B01G044300 chr7A 93063898 93066037 2139 False 1280.5 1301 89.361500 1 2159 2 chr7A.!!$F2 2158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.102300 TGGCCATCTACGACGACATG 59.898 55.0 0.00 0.00 0.00 3.21 F
153 165 0.179202 CATCATCCGCGAAAACGCAA 60.179 50.0 8.23 2.72 34.62 4.85 F
310 322 0.248825 CTGAGAATCTCGGCGACCAG 60.249 60.0 4.99 0.00 34.92 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1021 1055 0.179134 GTGATCGTCTTCCCCGTCAG 60.179 60.000 0.00 0.0 0.00 3.51 R
1074 1452 0.329261 CCTGGATCTTGGCCTTGACA 59.671 55.000 3.32 0.0 0.00 3.58 R
1747 2134 1.194772 GTGCAAGTCACGAAAGGCTAC 59.805 52.381 0.00 0.0 35.76 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 1.009389 GCGCGTCTATGGCCATCTAC 61.009 60.000 24.80 19.85 0.00 2.59
107 108 0.729478 CGCGTCTATGGCCATCTACG 60.729 60.000 32.81 32.81 34.31 3.51
110 111 1.399855 CGTCTATGGCCATCTACGACG 60.400 57.143 33.32 30.94 37.13 5.12
111 112 1.878088 GTCTATGGCCATCTACGACGA 59.122 52.381 24.80 0.00 0.00 4.20
115 116 0.102300 TGGCCATCTACGACGACATG 59.898 55.000 0.00 0.00 0.00 3.21
119 120 1.470805 CCATCTACGACGACATGGCAA 60.471 52.381 0.00 0.00 29.71 4.52
139 141 0.399454 CGGAATCAGGAGGCCATCAT 59.601 55.000 5.01 0.00 0.00 2.45
144 146 3.933722 AGGAGGCCATCATCCGCG 61.934 66.667 5.01 0.00 40.73 6.46
148 150 1.077787 AGGCCATCATCCGCGAAAA 60.078 52.632 8.23 0.00 0.00 2.29
149 151 1.064134 GGCCATCATCCGCGAAAAC 59.936 57.895 8.23 0.00 0.00 2.43
153 165 0.179202 CATCATCCGCGAAAACGCAA 60.179 50.000 8.23 2.72 34.62 4.85
308 320 4.719997 CTGAGAATCTCGGCGACC 57.280 61.111 4.99 0.00 34.92 4.79
309 321 1.809869 CTGAGAATCTCGGCGACCA 59.190 57.895 4.99 0.00 34.92 4.02
310 322 0.248825 CTGAGAATCTCGGCGACCAG 60.249 60.000 4.99 0.00 34.92 4.00
385 397 0.321298 GCAGGAGCTTACGGTTTGGA 60.321 55.000 0.00 0.00 37.91 3.53
423 436 4.012374 AGTACCGAGTTCGAGATGGTTAA 58.988 43.478 2.59 0.00 43.02 2.01
425 438 4.043037 ACCGAGTTCGAGATGGTTAATC 57.957 45.455 2.59 0.00 43.02 1.75
442 455 1.183549 ATCGAGCGACCAGTTACCTT 58.816 50.000 0.00 0.00 0.00 3.50
614 644 1.064825 CCTGGGGTTGTCTGGTTACT 58.935 55.000 0.00 0.00 0.00 2.24
622 652 2.225382 TGTCTGGTTACTGATCCGGA 57.775 50.000 6.61 6.61 36.85 5.14
625 655 3.132289 TGTCTGGTTACTGATCCGGATTC 59.868 47.826 20.22 12.31 40.59 2.52
815 849 1.566018 CCAAACCCGAGTCGAGCAAC 61.566 60.000 15.64 0.00 0.00 4.17
845 879 2.278077 CGGCCACGTACGCGATAA 60.278 61.111 15.93 0.00 42.00 1.75
873 907 1.477553 TATAGTCCACACGACCCCAC 58.522 55.000 0.00 0.00 43.08 4.61
880 914 2.184322 CACGACCCCACCGATCTG 59.816 66.667 0.00 0.00 0.00 2.90
885 919 1.899437 GACCCCACCGATCTGAAGCA 61.899 60.000 0.00 0.00 0.00 3.91
886 920 1.153289 CCCCACCGATCTGAAGCAG 60.153 63.158 0.00 0.00 0.00 4.24
887 921 1.817099 CCCACCGATCTGAAGCAGC 60.817 63.158 0.00 0.00 0.00 5.25
904 938 1.541588 CAGCCAAACAAGCTAGAACCC 59.458 52.381 0.00 0.00 38.95 4.11
917 951 3.381908 GCTAGAACCCAGAGAGATCGAAA 59.618 47.826 0.00 0.00 0.00 3.46
919 953 3.165875 AGAACCCAGAGAGATCGAAACA 58.834 45.455 0.00 0.00 0.00 2.83
920 954 3.056465 AGAACCCAGAGAGATCGAAACAC 60.056 47.826 0.00 0.00 0.00 3.32
923 957 3.257393 CCCAGAGAGATCGAAACACAAG 58.743 50.000 0.00 0.00 0.00 3.16
924 958 3.306364 CCCAGAGAGATCGAAACACAAGT 60.306 47.826 0.00 0.00 0.00 3.16
926 960 4.321601 CCAGAGAGATCGAAACACAAGTCT 60.322 45.833 0.00 0.00 0.00 3.24
927 961 4.856487 CAGAGAGATCGAAACACAAGTCTC 59.144 45.833 0.00 0.00 33.94 3.36
929 963 2.329379 AGATCGAAACACAAGTCTCGC 58.671 47.619 0.00 0.00 0.00 5.03
930 964 1.057847 GATCGAAACACAAGTCTCGCG 59.942 52.381 0.00 0.00 0.00 5.87
931 965 0.937699 TCGAAACACAAGTCTCGCGG 60.938 55.000 6.13 0.00 0.00 6.46
996 1030 1.442017 GCCGCAAACAACCATCGTC 60.442 57.895 0.00 0.00 0.00 4.20
998 1032 0.309302 CCGCAAACAACCATCGTCAA 59.691 50.000 0.00 0.00 0.00 3.18
1000 1034 1.262950 CGCAAACAACCATCGTCAAGA 59.737 47.619 0.00 0.00 0.00 3.02
1012 1046 2.802256 TCGTCAAGATGCAGATCTTCG 58.198 47.619 0.00 2.86 44.30 3.79
1014 1048 2.280971 CGTCAAGATGCAGATCTTCGTG 59.719 50.000 0.00 0.00 44.30 4.35
1015 1049 3.515630 GTCAAGATGCAGATCTTCGTGA 58.484 45.455 7.25 7.25 44.30 4.35
1016 1050 3.928992 GTCAAGATGCAGATCTTCGTGAA 59.071 43.478 11.53 0.00 44.30 3.18
1017 1051 4.032672 GTCAAGATGCAGATCTTCGTGAAG 59.967 45.833 11.53 3.17 44.30 3.02
1026 1060 0.596577 TCTTCGTGAAGACCCTGACG 59.403 55.000 8.19 0.00 42.06 4.35
1027 1061 0.388649 CTTCGTGAAGACCCTGACGG 60.389 60.000 3.49 0.00 40.79 4.79
1041 1419 1.141234 GACGGGGAAGACGATCACC 59.859 63.158 0.00 0.00 39.68 4.02
1189 1567 1.602165 CCGACTACAACGTGCAGAAGT 60.602 52.381 0.00 0.00 0.00 3.01
1198 1576 0.110328 CGTGCAGAAGTAGTCGACGT 60.110 55.000 10.46 1.19 0.00 4.34
1520 1902 7.498443 GCTTGAACTATCTAGCTAGGGTTTAA 58.502 38.462 20.58 20.03 46.64 1.52
1628 2014 9.353999 GTGGTTGGAAGTTTATGAATATTGTTC 57.646 33.333 0.00 0.00 0.00 3.18
1643 2029 4.946784 ATTGTTCGAGTCCTTTACATGC 57.053 40.909 0.00 0.00 0.00 4.06
1662 2048 2.533266 GCAAGCTGCAATGTTGTATCC 58.467 47.619 1.02 0.00 44.26 2.59
1698 2084 0.458669 CCCAATCCACTGCTTGCATC 59.541 55.000 0.00 0.00 0.00 3.91
1699 2085 1.471119 CCAATCCACTGCTTGCATCT 58.529 50.000 0.00 0.00 0.00 2.90
1755 2142 5.445964 TCTTTTTGTCCAAGAGTAGCCTTT 58.554 37.500 0.00 0.00 0.00 3.11
1951 2368 2.427506 AGATTCAGAACGAACAAGGCC 58.572 47.619 0.00 0.00 36.12 5.19
1952 2369 2.151202 GATTCAGAACGAACAAGGCCA 58.849 47.619 5.01 0.00 36.12 5.36
1953 2370 2.270352 TTCAGAACGAACAAGGCCAT 57.730 45.000 5.01 0.00 0.00 4.40
1964 2417 4.379652 GAACAAGGCCATTTGATGTTTGT 58.620 39.130 11.47 3.71 34.59 2.83
1968 2421 1.002315 GGCCATTTGATGTTTGTGCCT 59.998 47.619 0.00 0.00 34.83 4.75
2091 2586 5.686159 AGTCTGAACTTTGCTCTGAAATG 57.314 39.130 0.00 0.00 28.74 2.32
2092 2587 5.371526 AGTCTGAACTTTGCTCTGAAATGA 58.628 37.500 0.00 0.00 28.74 2.57
2093 2588 5.238214 AGTCTGAACTTTGCTCTGAAATGAC 59.762 40.000 0.00 0.00 28.74 3.06
2094 2589 4.212004 TCTGAACTTTGCTCTGAAATGACG 59.788 41.667 0.00 0.00 0.00 4.35
2095 2590 2.977405 ACTTTGCTCTGAAATGACGC 57.023 45.000 0.00 0.00 0.00 5.19
2096 2591 1.195448 ACTTTGCTCTGAAATGACGCG 59.805 47.619 3.53 3.53 0.00 6.01
2111 2606 1.195900 GACGCGCTGAATTTGTTACCA 59.804 47.619 5.73 0.00 0.00 3.25
2132 2627 4.142730 CCAGCTCAAGTTCTATGTTTCAGC 60.143 45.833 0.00 0.00 0.00 4.26
2159 2654 1.093159 GCTATGCATGCTCATAGGCC 58.907 55.000 20.33 0.00 43.70 5.19
2177 2672 8.783093 TCATAGGCCGATTTATTATTCAGTTTG 58.217 33.333 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 1.358725 ATTCCGTTGCCATGTCGTCG 61.359 55.000 0.00 0.00 0.00 5.12
107 108 0.373716 GATTCCGTTGCCATGTCGTC 59.626 55.000 0.00 0.00 0.00 4.20
110 111 0.734889 CCTGATTCCGTTGCCATGTC 59.265 55.000 0.00 0.00 0.00 3.06
111 112 0.327924 TCCTGATTCCGTTGCCATGT 59.672 50.000 0.00 0.00 0.00 3.21
115 116 2.115291 GCCTCCTGATTCCGTTGCC 61.115 63.158 0.00 0.00 0.00 4.52
119 120 0.982852 TGATGGCCTCCTGATTCCGT 60.983 55.000 3.32 0.00 0.00 4.69
144 146 1.724581 CTTCGGGCGTTGCGTTTTC 60.725 57.895 0.00 0.00 0.00 2.29
148 150 1.079681 TTATCTTCGGGCGTTGCGT 60.080 52.632 0.00 0.00 0.00 5.24
149 151 0.804544 TCTTATCTTCGGGCGTTGCG 60.805 55.000 0.00 0.00 0.00 4.85
153 165 1.739371 GCTGTTCTTATCTTCGGGCGT 60.739 52.381 0.00 0.00 0.00 5.68
156 168 1.136305 TCGGCTGTTCTTATCTTCGGG 59.864 52.381 0.00 0.00 0.00 5.14
284 296 1.388065 CCGAGATTCTCAGCCCGTCT 61.388 60.000 13.88 0.00 0.00 4.18
296 308 4.162690 GCCCTGGTCGCCGAGATT 62.163 66.667 0.00 0.00 0.00 2.40
385 397 2.164332 TACTTCTCCACGCCTCCCCT 62.164 60.000 0.00 0.00 0.00 4.79
564 583 0.036671 CCGTACCTCCACTTCCAACC 60.037 60.000 0.00 0.00 0.00 3.77
565 584 0.672711 GCCGTACCTCCACTTCCAAC 60.673 60.000 0.00 0.00 0.00 3.77
566 585 0.834687 AGCCGTACCTCCACTTCCAA 60.835 55.000 0.00 0.00 0.00 3.53
567 586 1.229082 AGCCGTACCTCCACTTCCA 60.229 57.895 0.00 0.00 0.00 3.53
570 593 2.291043 CCCAGCCGTACCTCCACTT 61.291 63.158 0.00 0.00 0.00 3.16
595 625 1.064825 AGTAACCAGACAACCCCAGG 58.935 55.000 0.00 0.00 0.00 4.45
596 626 1.697432 TCAGTAACCAGACAACCCCAG 59.303 52.381 0.00 0.00 0.00 4.45
597 627 1.809133 TCAGTAACCAGACAACCCCA 58.191 50.000 0.00 0.00 0.00 4.96
598 628 2.355818 GGATCAGTAACCAGACAACCCC 60.356 54.545 0.00 0.00 0.00 4.95
599 629 2.677037 CGGATCAGTAACCAGACAACCC 60.677 54.545 0.00 0.00 0.00 4.11
600 630 2.618053 CGGATCAGTAACCAGACAACC 58.382 52.381 0.00 0.00 0.00 3.77
622 652 2.044946 GGCCTGGTTGAGCCGAAT 60.045 61.111 0.00 0.00 39.87 3.34
844 878 7.122353 GGGTCGTGTGGACTATATATAGATGTT 59.878 40.741 23.70 3.77 45.35 2.71
845 879 6.602406 GGGTCGTGTGGACTATATATAGATGT 59.398 42.308 23.70 4.94 45.35 3.06
873 907 0.449388 GTTTGGCTGCTTCAGATCGG 59.551 55.000 0.00 0.00 32.44 4.18
880 914 2.154462 TCTAGCTTGTTTGGCTGCTTC 58.846 47.619 0.00 0.00 40.52 3.86
885 919 1.144913 TGGGTTCTAGCTTGTTTGGCT 59.855 47.619 0.00 0.00 43.02 4.75
886 920 1.541588 CTGGGTTCTAGCTTGTTTGGC 59.458 52.381 0.00 0.00 0.00 4.52
887 921 3.077359 CTCTGGGTTCTAGCTTGTTTGG 58.923 50.000 0.00 0.00 0.00 3.28
904 938 4.804108 AGACTTGTGTTTCGATCTCTCTG 58.196 43.478 0.00 0.00 0.00 3.35
945 979 0.883833 TCCTGGTTAAGTCGACGGAC 59.116 55.000 10.46 9.91 43.76 4.79
976 1010 2.950673 GATGGTTGTTTGCGGCGA 59.049 55.556 12.98 0.00 0.00 5.54
978 1012 1.442017 GACGATGGTTGTTTGCGGC 60.442 57.895 0.00 0.00 0.00 6.53
979 1013 0.309302 TTGACGATGGTTGTTTGCGG 59.691 50.000 0.00 0.00 0.00 5.69
980 1014 1.262950 TCTTGACGATGGTTGTTTGCG 59.737 47.619 0.00 0.00 0.00 4.85
1007 1041 0.596577 CGTCAGGGTCTTCACGAAGA 59.403 55.000 5.38 5.38 44.47 2.87
1020 1054 1.320344 TGATCGTCTTCCCCGTCAGG 61.320 60.000 0.00 0.00 37.24 3.86
1021 1055 0.179134 GTGATCGTCTTCCCCGTCAG 60.179 60.000 0.00 0.00 0.00 3.51
1022 1056 1.601419 GGTGATCGTCTTCCCCGTCA 61.601 60.000 0.00 0.00 0.00 4.35
1023 1057 1.141234 GGTGATCGTCTTCCCCGTC 59.859 63.158 0.00 0.00 0.00 4.79
1024 1058 2.356780 GGGTGATCGTCTTCCCCGT 61.357 63.158 0.00 0.00 34.32 5.28
1025 1059 2.058595 AGGGTGATCGTCTTCCCCG 61.059 63.158 0.00 0.00 40.70 5.73
1026 1060 1.522569 CAGGGTGATCGTCTTCCCC 59.477 63.158 0.00 0.00 40.70 4.81
1027 1061 0.976073 TCCAGGGTGATCGTCTTCCC 60.976 60.000 0.00 0.00 40.16 3.97
1028 1062 0.461961 CTCCAGGGTGATCGTCTTCC 59.538 60.000 0.00 0.00 0.00 3.46
1029 1063 0.461961 CCTCCAGGGTGATCGTCTTC 59.538 60.000 0.00 0.00 0.00 2.87
1030 1064 2.596776 CCTCCAGGGTGATCGTCTT 58.403 57.895 0.00 0.00 0.00 3.01
1031 1065 4.364318 CCTCCAGGGTGATCGTCT 57.636 61.111 0.00 0.00 0.00 4.18
1041 1419 3.028921 GCTGCTCTCCACCTCCAGG 62.029 68.421 0.00 0.00 42.17 4.45
1074 1452 0.329261 CCTGGATCTTGGCCTTGACA 59.671 55.000 3.32 0.00 0.00 3.58
1566 1951 6.262601 CCCAAAACCATCACGTAATAATGTC 58.737 40.000 0.00 0.00 0.00 3.06
1579 1964 6.016276 CACAGTTATATAGCCCCAAAACCATC 60.016 42.308 0.00 0.00 0.00 3.51
1628 2014 2.094894 CAGCTTGCATGTAAAGGACTCG 59.905 50.000 10.93 0.00 0.00 4.18
1643 2029 2.162208 ACGGATACAACATTGCAGCTTG 59.838 45.455 0.00 0.00 0.00 4.01
1655 2041 5.957842 AGCAAAAAGATGAACGGATACAA 57.042 34.783 0.00 0.00 0.00 2.41
1662 2048 4.497473 TTGGGTAGCAAAAAGATGAACG 57.503 40.909 0.00 0.00 0.00 3.95
1733 2120 5.560953 CGAAAGGCTACTCTTGGACAAAAAG 60.561 44.000 0.00 0.00 0.00 2.27
1740 2127 2.029290 GTCACGAAAGGCTACTCTTGGA 60.029 50.000 0.00 0.00 0.00 3.53
1745 2132 1.727335 GCAAGTCACGAAAGGCTACTC 59.273 52.381 0.00 0.00 0.00 2.59
1747 2134 1.194772 GTGCAAGTCACGAAAGGCTAC 59.805 52.381 0.00 0.00 35.76 3.58
1949 2366 2.460757 AGGCACAAACATCAAATGGC 57.539 45.000 0.00 0.00 36.17 4.40
1951 2368 6.548441 AATCAAAGGCACAAACATCAAATG 57.452 33.333 0.00 0.00 0.00 2.32
1952 2369 6.513720 GCAAATCAAAGGCACAAACATCAAAT 60.514 34.615 0.00 0.00 0.00 2.32
1953 2370 5.220815 GCAAATCAAAGGCACAAACATCAAA 60.221 36.000 0.00 0.00 0.00 2.69
1964 2417 3.827876 TCATTCTCTGCAAATCAAAGGCA 59.172 39.130 0.00 0.00 35.96 4.75
1968 2421 8.890124 TTGAATTTCATTCTCTGCAAATCAAA 57.110 26.923 0.00 0.00 39.96 2.69
2001 2454 8.275632 CACCATATAAATCACACTCACAATACG 58.724 37.037 0.00 0.00 0.00 3.06
2046 2541 4.023739 TGCATTCATTTCAGAGCATTCG 57.976 40.909 0.00 0.00 0.00 3.34
2084 2579 2.532531 AATTCAGCGCGTCATTTCAG 57.467 45.000 8.43 0.00 0.00 3.02
2085 2580 2.031245 ACAAATTCAGCGCGTCATTTCA 60.031 40.909 8.43 0.00 0.00 2.69
2086 2581 2.584791 ACAAATTCAGCGCGTCATTTC 58.415 42.857 8.43 0.00 0.00 2.17
2087 2582 2.704725 ACAAATTCAGCGCGTCATTT 57.295 40.000 8.43 4.79 0.00 2.32
2088 2583 2.704725 AACAAATTCAGCGCGTCATT 57.295 40.000 8.43 0.00 0.00 2.57
2089 2584 2.159572 GGTAACAAATTCAGCGCGTCAT 60.160 45.455 8.43 0.00 0.00 3.06
2090 2585 1.195900 GGTAACAAATTCAGCGCGTCA 59.804 47.619 8.43 0.00 0.00 4.35
2091 2586 1.878373 GGTAACAAATTCAGCGCGTC 58.122 50.000 8.43 0.00 0.00 5.19
2111 2606 4.904241 AGCTGAAACATAGAACTTGAGCT 58.096 39.130 0.00 0.00 0.00 4.09
2159 2654 7.412853 AGCTCTGCAAACTGAATAATAAATCG 58.587 34.615 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.