Multiple sequence alignment - TraesCS7B01G044200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G044200 chr7B 100.000 5863 0 0 1 5863 43884144 43878282 0.000000e+00 10828.0
1 TraesCS7B01G044200 chr7B 93.461 1254 77 5 2362 3614 327275896 327274647 0.000000e+00 1857.0
2 TraesCS7B01G044200 chr7B 86.555 714 59 16 3635 4345 327274455 327273776 0.000000e+00 752.0
3 TraesCS7B01G044200 chr7B 81.564 895 107 26 1032 1901 327277370 327276509 0.000000e+00 686.0
4 TraesCS7B01G044200 chr7B 86.855 601 53 14 4341 4924 327273648 327273057 0.000000e+00 649.0
5 TraesCS7B01G044200 chr7B 97.115 208 6 0 4673 4880 43895903 43895696 9.350000e-93 351.0
6 TraesCS7B01G044200 chr7B 86.463 229 27 4 5113 5339 327272615 327272389 1.260000e-61 248.0
7 TraesCS7B01G044200 chr7B 81.911 293 39 7 2034 2320 327276293 327276009 9.820000e-58 235.0
8 TraesCS7B01G044200 chr7B 86.792 212 8 7 5316 5516 327272375 327272173 9.890000e-53 219.0
9 TraesCS7B01G044200 chr7B 84.118 170 18 5 4982 5145 327272907 327272741 7.870000e-34 156.0
10 TraesCS7B01G044200 chr7A 93.214 2682 139 25 975 3631 93072692 93075355 0.000000e+00 3904.0
11 TraesCS7B01G044200 chr7A 91.395 1534 76 22 4341 5863 93076347 93077835 0.000000e+00 2050.0
12 TraesCS7B01G044200 chr7A 93.222 1254 81 3 2362 3614 192670790 192669540 0.000000e+00 1842.0
13 TraesCS7B01G044200 chr7A 92.308 702 38 8 3650 4343 93075513 93076206 0.000000e+00 983.0
14 TraesCS7B01G044200 chr7A 86.685 721 51 21 3635 4345 192669329 192668644 0.000000e+00 758.0
15 TraesCS7B01G044200 chr7A 83.400 753 91 21 886 1622 192672761 192672027 0.000000e+00 667.0
16 TraesCS7B01G044200 chr7A 86.356 601 55 15 4341 4924 192668517 192667927 1.070000e-176 630.0
17 TraesCS7B01G044200 chr7A 80.212 753 113 18 1100 1847 192818377 192817656 3.110000e-147 532.0
18 TraesCS7B01G044200 chr7A 87.042 409 29 11 5113 5516 192667485 192667096 1.940000e-119 440.0
19 TraesCS7B01G044200 chr7A 89.420 293 19 10 664 951 93072423 93072708 5.590000e-95 359.0
20 TraesCS7B01G044200 chr7A 85.953 299 24 9 130 414 93072104 93072398 2.650000e-78 303.0
21 TraesCS7B01G044200 chr7A 89.744 195 18 2 440 633 713421441 713421634 1.260000e-61 248.0
22 TraesCS7B01G044200 chr7A 89.231 195 19 2 440 633 713542216 713542409 5.870000e-60 243.0
23 TraesCS7B01G044200 chr7A 88.757 169 13 4 4982 5145 192667777 192667610 9.960000e-48 202.0
24 TraesCS7B01G044200 chr7A 83.710 221 24 5 2105 2320 192671116 192670903 1.290000e-46 198.0
25 TraesCS7B01G044200 chr7A 84.456 193 16 5 1709 1901 192671850 192671672 1.680000e-40 178.0
26 TraesCS7B01G044200 chr7A 87.970 133 16 0 1 133 93071837 93071969 2.190000e-34 158.0
27 TraesCS7B01G044200 chr7A 100.000 29 0 0 1606 1634 192817836 192817808 3.000000e-03 54.7
28 TraesCS7B01G044200 chr7D 94.567 1988 91 10 2362 4345 91393480 91391506 0.000000e+00 3057.0
29 TraesCS7B01G044200 chr7D 95.306 1534 56 11 4341 5863 91391367 91389839 0.000000e+00 2420.0
30 TraesCS7B01G044200 chr7D 93.052 1281 81 6 2362 3638 185139356 185138080 0.000000e+00 1866.0
31 TraesCS7B01G044200 chr7D 88.898 1243 64 34 778 2000 91395513 91394325 0.000000e+00 1463.0
32 TraesCS7B01G044200 chr7D 81.607 1033 120 32 886 1901 185140915 185139936 0.000000e+00 791.0
33 TraesCS7B01G044200 chr7D 86.555 714 56 18 3635 4345 185137911 185137235 0.000000e+00 750.0
34 TraesCS7B01G044200 chr7D 85.904 603 58 15 4338 4924 185137113 185136522 8.350000e-173 617.0
35 TraesCS7B01G044200 chr7D 86.024 415 33 14 5113 5516 185136079 185135679 7.020000e-114 422.0
36 TraesCS7B01G044200 chr7D 87.500 272 25 6 2035 2306 91394210 91393948 7.380000e-79 305.0
37 TraesCS7B01G044200 chr7D 92.308 182 13 1 155 336 91396977 91396797 2.100000e-64 257.0
38 TraesCS7B01G044200 chr7D 90.533 169 11 2 4982 5145 185136372 185136204 9.890000e-53 219.0
39 TraesCS7B01G044200 chr7D 94.624 93 5 0 2228 2320 185139561 185139469 1.700000e-30 145.0
40 TraesCS7B01G044200 chr4A 93.844 666 38 2 2920 3585 439068900 439068238 0.000000e+00 1000.0
41 TraesCS7B01G044200 chr4A 93.407 182 12 0 3679 3860 439068241 439068060 2.690000e-68 270.0
42 TraesCS7B01G044200 chr4A 90.306 196 14 4 440 633 311489829 311489637 9.750000e-63 252.0
43 TraesCS7B01G044200 chr4A 89.017 173 16 2 3934 4105 439068064 439067894 1.660000e-50 211.0
44 TraesCS7B01G044200 chr4D 87.295 732 75 12 5139 5863 189583608 189584328 0.000000e+00 821.0
45 TraesCS7B01G044200 chr5A 91.795 195 13 2 440 633 330246940 330246748 9.680000e-68 268.0
46 TraesCS7B01G044200 chr5A 90.306 196 14 4 440 633 143024105 143024297 9.750000e-63 252.0
47 TraesCS7B01G044200 chr2A 90.306 196 15 4 440 633 276880942 276880749 2.710000e-63 254.0
48 TraesCS7B01G044200 chr2A 88.571 210 20 4 425 633 133741648 133741854 9.750000e-63 252.0
49 TraesCS7B01G044200 chr1B 90.206 194 17 2 441 633 423193008 423192816 9.750000e-63 252.0
50 TraesCS7B01G044200 chr3A 89.744 195 18 2 440 633 60546630 60546823 1.260000e-61 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G044200 chr7B 43878282 43884144 5862 True 10828.000000 10828 100.000000 1 5863 1 chr7B.!!$R1 5862
1 TraesCS7B01G044200 chr7B 327272173 327277370 5197 True 600.250000 1857 85.964875 1032 5516 8 chr7B.!!$R3 4484
2 TraesCS7B01G044200 chr7A 93071837 93077835 5998 False 1292.833333 3904 90.043333 1 5863 6 chr7A.!!$F3 5862
3 TraesCS7B01G044200 chr7A 192667096 192672761 5665 True 614.375000 1842 86.703500 886 5516 8 chr7A.!!$R1 4630
4 TraesCS7B01G044200 chr7A 192817656 192818377 721 True 293.350000 532 90.106000 1100 1847 2 chr7A.!!$R2 747
5 TraesCS7B01G044200 chr7D 91389839 91396977 7138 True 1500.400000 3057 91.715800 155 5863 5 chr7D.!!$R1 5708
6 TraesCS7B01G044200 chr7D 185135679 185140915 5236 True 687.142857 1866 88.328429 886 5516 7 chr7D.!!$R2 4630
7 TraesCS7B01G044200 chr4A 439067894 439068900 1006 True 493.666667 1000 92.089333 2920 4105 3 chr4A.!!$R2 1185
8 TraesCS7B01G044200 chr4D 189583608 189584328 720 False 821.000000 821 87.295000 5139 5863 1 chr4D.!!$F1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.031994 GCTTCAATGCGGGTGTTGTT 59.968 50.000 0.00 0.0 0.00 2.83 F
469 1277 0.034896 TGAGCGGTTCTCCCAGAAAC 59.965 55.000 0.00 0.0 41.18 2.78 F
493 1301 0.263172 CCTCCCCAGCTTCTCCTAGA 59.737 60.000 0.00 0.0 0.00 2.43 F
595 1403 0.325110 TCTGAGAGAAGCTGGGGAGG 60.325 60.000 0.00 0.0 0.00 4.30 F
1703 2987 0.460311 CGAGGGGAACTGCGAACTAT 59.540 55.000 0.00 0.0 0.00 2.12 F
2356 4165 0.040204 AAGATGGGAGTTTGGCTGGG 59.960 55.000 0.00 0.0 0.00 4.45 F
3592 5799 0.677731 GCTGCAGCAGGTACCAATCA 60.678 55.000 33.36 3.6 41.59 2.57 F
4492 7100 1.135489 CGCGAAGTACTGAAGCTGGTA 60.135 52.381 0.00 0.0 0.00 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 3202 0.318445 GCGATAATCAGTACGGCCGT 60.318 55.000 36.01 36.01 0.00 5.68 R
2020 3517 1.475280 CAATCAATCAGGCCCACACTG 59.525 52.381 0.00 0.00 37.30 3.66 R
2076 3595 2.039746 AGTTGTGTAGCAGCCAACCATA 59.960 45.455 8.22 0.00 39.36 2.74 R
2356 4165 2.160205 GGGCAGACAAGGAAAACTACC 58.840 52.381 0.00 0.00 0.00 3.18 R
2865 5072 0.322906 CAGCAGGTTCCCCTCCTTTC 60.323 60.000 0.00 0.00 39.89 2.62 R
4272 6722 1.696884 GTCAGGGAGATGGGAGGATTC 59.303 57.143 0.00 0.00 0.00 2.52 R
4591 7199 0.827089 TTGTGTGCCATGGGGTTGAG 60.827 55.000 15.13 0.00 36.17 3.02 R
5311 8225 2.703007 AGAACTGGAGGCTGGATGTATC 59.297 50.000 0.00 0.00 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.089920 GCGGCATCACATCACTTTCT 58.910 50.000 0.00 0.00 0.00 2.52
27 28 2.490903 GGCATCACATCACTTTCTGCTT 59.509 45.455 0.00 0.00 0.00 3.91
30 31 4.320714 GCATCACATCACTTTCTGCTTCAA 60.321 41.667 0.00 0.00 0.00 2.69
43 44 0.031994 GCTTCAATGCGGGTGTTGTT 59.968 50.000 0.00 0.00 0.00 2.83
47 48 0.521291 CAATGCGGGTGTTGTTCGAT 59.479 50.000 0.00 0.00 0.00 3.59
66 67 2.074967 TCCAACATGGACCCCAGTC 58.925 57.895 0.00 0.00 42.67 3.51
67 68 0.770166 TCCAACATGGACCCCAGTCA 60.770 55.000 0.00 0.00 42.67 3.41
84 85 4.281688 CCAGTCATTGACCACCAAAGAATT 59.718 41.667 13.14 0.00 38.43 2.17
86 87 4.281688 AGTCATTGACCACCAAAGAATTGG 59.718 41.667 13.14 6.06 46.37 3.16
125 126 0.326264 AAGAACGCCAAGATGCTCCT 59.674 50.000 0.00 0.00 0.00 3.69
146 285 5.134679 TCCTAAAGAGCTCTCCTACCACTAT 59.865 44.000 18.55 0.00 0.00 2.12
174 318 5.275263 AGGGAAAGGGAAAATGAAGATCA 57.725 39.130 0.00 0.00 0.00 2.92
175 319 5.654370 AGGGAAAGGGAAAATGAAGATCAA 58.346 37.500 0.00 0.00 0.00 2.57
180 324 8.096414 GGAAAGGGAAAATGAAGATCAATTGAA 58.904 33.333 13.09 0.00 0.00 2.69
183 327 9.662947 AAGGGAAAATGAAGATCAATTGAATTC 57.337 29.630 21.36 21.36 0.00 2.17
298 442 8.344831 GCATGAACTATGTTAAATGTGCTATGA 58.655 33.333 0.00 0.00 39.08 2.15
346 499 2.017138 CATGGCTTGCATGCATTTGA 57.983 45.000 23.37 5.27 34.04 2.69
364 517 2.128927 GGAGGGGGTAAAGGGGGT 59.871 66.667 0.00 0.00 0.00 4.95
404 1212 6.442112 GGACAAATGATGCTCTTAATTAGGC 58.558 40.000 0.00 0.00 0.00 3.93
408 1216 7.504911 ACAAATGATGCTCTTAATTAGGCAGAT 59.495 33.333 12.76 7.05 34.81 2.90
414 1222 9.092876 GATGCTCTTAATTAGGCAGATATGTAC 57.907 37.037 12.76 0.00 34.81 2.90
415 1223 7.386851 TGCTCTTAATTAGGCAGATATGTACC 58.613 38.462 5.98 0.00 0.00 3.34
416 1224 7.016170 TGCTCTTAATTAGGCAGATATGTACCA 59.984 37.037 5.98 0.00 0.00 3.25
417 1225 8.043710 GCTCTTAATTAGGCAGATATGTACCAT 58.956 37.037 0.00 0.00 0.00 3.55
418 1226 9.376075 CTCTTAATTAGGCAGATATGTACCATG 57.624 37.037 0.00 0.00 0.00 3.66
419 1227 7.824289 TCTTAATTAGGCAGATATGTACCATGC 59.176 37.037 0.00 0.00 36.16 4.06
424 1232 3.600388 GCAGATATGTACCATGCCTACC 58.400 50.000 0.00 0.00 0.00 3.18
425 1233 3.007940 GCAGATATGTACCATGCCTACCA 59.992 47.826 0.00 0.00 0.00 3.25
426 1234 4.504864 GCAGATATGTACCATGCCTACCAA 60.505 45.833 0.00 0.00 0.00 3.67
427 1235 5.620206 CAGATATGTACCATGCCTACCAAA 58.380 41.667 0.00 0.00 0.00 3.28
428 1236 6.061441 CAGATATGTACCATGCCTACCAAAA 58.939 40.000 0.00 0.00 0.00 2.44
429 1237 6.017109 CAGATATGTACCATGCCTACCAAAAC 60.017 42.308 0.00 0.00 0.00 2.43
430 1238 2.428491 TGTACCATGCCTACCAAAACG 58.572 47.619 0.00 0.00 0.00 3.60
431 1239 2.224572 TGTACCATGCCTACCAAAACGT 60.225 45.455 0.00 0.00 0.00 3.99
432 1240 1.530323 ACCATGCCTACCAAAACGTC 58.470 50.000 0.00 0.00 0.00 4.34
433 1241 1.202830 ACCATGCCTACCAAAACGTCA 60.203 47.619 0.00 0.00 0.00 4.35
434 1242 2.091541 CCATGCCTACCAAAACGTCAT 58.908 47.619 0.00 0.00 0.00 3.06
435 1243 3.275143 CCATGCCTACCAAAACGTCATA 58.725 45.455 0.00 0.00 0.00 2.15
436 1244 3.882888 CCATGCCTACCAAAACGTCATAT 59.117 43.478 0.00 0.00 0.00 1.78
437 1245 4.261155 CCATGCCTACCAAAACGTCATATG 60.261 45.833 0.00 0.00 0.00 1.78
438 1246 4.209307 TGCCTACCAAAACGTCATATGA 57.791 40.909 0.00 0.00 0.00 2.15
439 1247 4.188462 TGCCTACCAAAACGTCATATGAG 58.812 43.478 5.42 3.27 0.00 2.90
440 1248 3.002348 GCCTACCAAAACGTCATATGAGC 59.998 47.826 5.42 0.58 0.00 4.26
441 1249 3.560068 CCTACCAAAACGTCATATGAGCC 59.440 47.826 5.42 0.00 0.00 4.70
442 1250 3.066291 ACCAAAACGTCATATGAGCCA 57.934 42.857 5.42 0.00 0.00 4.75
443 1251 3.009723 ACCAAAACGTCATATGAGCCAG 58.990 45.455 5.42 0.97 0.00 4.85
444 1252 3.009723 CCAAAACGTCATATGAGCCAGT 58.990 45.455 5.42 1.61 0.00 4.00
445 1253 3.440173 CCAAAACGTCATATGAGCCAGTT 59.560 43.478 5.42 7.68 0.00 3.16
446 1254 4.437390 CCAAAACGTCATATGAGCCAGTTC 60.437 45.833 5.42 0.00 0.00 3.01
447 1255 3.895232 AACGTCATATGAGCCAGTTCT 57.105 42.857 5.42 0.00 0.00 3.01
448 1256 3.895232 ACGTCATATGAGCCAGTTCTT 57.105 42.857 5.42 0.00 0.00 2.52
449 1257 4.207891 ACGTCATATGAGCCAGTTCTTT 57.792 40.909 5.42 0.00 0.00 2.52
450 1258 4.579869 ACGTCATATGAGCCAGTTCTTTT 58.420 39.130 5.42 0.00 0.00 2.27
451 1259 4.393062 ACGTCATATGAGCCAGTTCTTTTG 59.607 41.667 5.42 0.00 0.00 2.44
452 1260 4.631377 CGTCATATGAGCCAGTTCTTTTGA 59.369 41.667 5.42 0.00 0.00 2.69
453 1261 5.220548 CGTCATATGAGCCAGTTCTTTTGAG 60.221 44.000 5.42 0.00 0.00 3.02
454 1262 4.637534 TCATATGAGCCAGTTCTTTTGAGC 59.362 41.667 0.00 0.00 0.00 4.26
455 1263 1.229428 TGAGCCAGTTCTTTTGAGCG 58.771 50.000 0.00 0.00 34.69 5.03
456 1264 0.519077 GAGCCAGTTCTTTTGAGCGG 59.481 55.000 0.00 0.00 34.69 5.52
457 1265 0.179018 AGCCAGTTCTTTTGAGCGGT 60.179 50.000 0.00 0.00 34.69 5.68
458 1266 0.668535 GCCAGTTCTTTTGAGCGGTT 59.331 50.000 0.00 0.00 34.69 4.44
459 1267 1.335051 GCCAGTTCTTTTGAGCGGTTC 60.335 52.381 0.00 0.00 34.69 3.62
460 1268 2.222027 CCAGTTCTTTTGAGCGGTTCT 58.778 47.619 0.00 0.00 34.69 3.01
461 1269 2.224314 CCAGTTCTTTTGAGCGGTTCTC 59.776 50.000 0.00 0.00 42.23 2.87
462 1270 2.224314 CAGTTCTTTTGAGCGGTTCTCC 59.776 50.000 0.00 0.00 41.18 3.71
463 1271 1.535896 GTTCTTTTGAGCGGTTCTCCC 59.464 52.381 0.00 0.00 41.18 4.30
464 1272 0.762418 TCTTTTGAGCGGTTCTCCCA 59.238 50.000 0.00 0.00 41.18 4.37
465 1273 1.160137 CTTTTGAGCGGTTCTCCCAG 58.840 55.000 0.00 0.00 41.18 4.45
466 1274 0.762418 TTTTGAGCGGTTCTCCCAGA 59.238 50.000 0.00 0.00 41.18 3.86
467 1275 0.762418 TTTGAGCGGTTCTCCCAGAA 59.238 50.000 0.00 0.00 41.18 3.02
468 1276 0.762418 TTGAGCGGTTCTCCCAGAAA 59.238 50.000 0.00 0.00 41.18 2.52
469 1277 0.034896 TGAGCGGTTCTCCCAGAAAC 59.965 55.000 0.00 0.00 41.18 2.78
472 1280 3.982829 GGTTCTCCCAGAAACGCC 58.017 61.111 0.00 0.00 35.75 5.68
473 1281 1.674651 GGTTCTCCCAGAAACGCCC 60.675 63.158 0.00 0.00 35.75 6.13
474 1282 1.674651 GTTCTCCCAGAAACGCCCC 60.675 63.158 0.00 0.00 35.75 5.80
475 1283 2.902457 TTCTCCCAGAAACGCCCCC 61.902 63.158 0.00 0.00 29.99 5.40
476 1284 3.330720 CTCCCAGAAACGCCCCCT 61.331 66.667 0.00 0.00 0.00 4.79
477 1285 3.327404 TCCCAGAAACGCCCCCTC 61.327 66.667 0.00 0.00 0.00 4.30
478 1286 4.426313 CCCAGAAACGCCCCCTCC 62.426 72.222 0.00 0.00 0.00 4.30
479 1287 4.426313 CCAGAAACGCCCCCTCCC 62.426 72.222 0.00 0.00 0.00 4.30
480 1288 4.426313 CAGAAACGCCCCCTCCCC 62.426 72.222 0.00 0.00 0.00 4.81
481 1289 4.995058 AGAAACGCCCCCTCCCCA 62.995 66.667 0.00 0.00 0.00 4.96
482 1290 4.426313 GAAACGCCCCCTCCCCAG 62.426 72.222 0.00 0.00 0.00 4.45
488 1296 3.093172 CCCCCTCCCCAGCTTCTC 61.093 72.222 0.00 0.00 0.00 2.87
489 1297 3.093172 CCCCTCCCCAGCTTCTCC 61.093 72.222 0.00 0.00 0.00 3.71
490 1298 2.041928 CCCTCCCCAGCTTCTCCT 59.958 66.667 0.00 0.00 0.00 3.69
491 1299 1.314867 CCCTCCCCAGCTTCTCCTA 59.685 63.158 0.00 0.00 0.00 2.94
492 1300 0.762461 CCCTCCCCAGCTTCTCCTAG 60.762 65.000 0.00 0.00 0.00 3.02
493 1301 0.263172 CCTCCCCAGCTTCTCCTAGA 59.737 60.000 0.00 0.00 0.00 2.43
494 1302 1.343478 CCTCCCCAGCTTCTCCTAGAA 60.343 57.143 0.00 0.00 32.50 2.10
495 1303 2.688477 CTCCCCAGCTTCTCCTAGAAT 58.312 52.381 0.00 0.00 33.13 2.40
496 1304 2.632512 CTCCCCAGCTTCTCCTAGAATC 59.367 54.545 0.00 0.00 33.13 2.52
497 1305 1.342819 CCCCAGCTTCTCCTAGAATCG 59.657 57.143 0.00 0.00 33.13 3.34
498 1306 1.270041 CCCAGCTTCTCCTAGAATCGC 60.270 57.143 0.00 0.00 33.13 4.58
499 1307 1.270041 CCAGCTTCTCCTAGAATCGCC 60.270 57.143 0.00 0.00 33.13 5.54
500 1308 1.410517 CAGCTTCTCCTAGAATCGCCA 59.589 52.381 0.00 0.00 33.13 5.69
501 1309 1.410882 AGCTTCTCCTAGAATCGCCAC 59.589 52.381 0.00 0.00 33.13 5.01
502 1310 1.137086 GCTTCTCCTAGAATCGCCACA 59.863 52.381 0.00 0.00 33.13 4.17
503 1311 2.418746 GCTTCTCCTAGAATCGCCACAA 60.419 50.000 0.00 0.00 33.13 3.33
504 1312 2.961526 TCTCCTAGAATCGCCACAAC 57.038 50.000 0.00 0.00 0.00 3.32
505 1313 2.176045 TCTCCTAGAATCGCCACAACA 58.824 47.619 0.00 0.00 0.00 3.33
506 1314 2.766263 TCTCCTAGAATCGCCACAACAT 59.234 45.455 0.00 0.00 0.00 2.71
507 1315 3.958147 TCTCCTAGAATCGCCACAACATA 59.042 43.478 0.00 0.00 0.00 2.29
508 1316 4.588951 TCTCCTAGAATCGCCACAACATAT 59.411 41.667 0.00 0.00 0.00 1.78
509 1317 5.070446 TCTCCTAGAATCGCCACAACATATT 59.930 40.000 0.00 0.00 0.00 1.28
510 1318 5.680619 TCCTAGAATCGCCACAACATATTT 58.319 37.500 0.00 0.00 0.00 1.40
511 1319 6.119536 TCCTAGAATCGCCACAACATATTTT 58.880 36.000 0.00 0.00 0.00 1.82
512 1320 6.601613 TCCTAGAATCGCCACAACATATTTTT 59.398 34.615 0.00 0.00 0.00 1.94
568 1376 8.682936 AGCTAGGATTGTAAAAACATATGGAG 57.317 34.615 7.80 0.00 0.00 3.86
569 1377 8.275040 AGCTAGGATTGTAAAAACATATGGAGT 58.725 33.333 7.80 0.00 0.00 3.85
570 1378 8.345565 GCTAGGATTGTAAAAACATATGGAGTG 58.654 37.037 7.80 0.00 0.00 3.51
571 1379 9.613428 CTAGGATTGTAAAAACATATGGAGTGA 57.387 33.333 7.80 0.00 0.00 3.41
572 1380 8.281212 AGGATTGTAAAAACATATGGAGTGAC 57.719 34.615 7.80 0.40 0.00 3.67
573 1381 7.065803 AGGATTGTAAAAACATATGGAGTGACG 59.934 37.037 7.80 0.00 0.00 4.35
574 1382 7.065324 GGATTGTAAAAACATATGGAGTGACGA 59.935 37.037 7.80 0.21 0.00 4.20
575 1383 7.915293 TTGTAAAAACATATGGAGTGACGAT 57.085 32.000 7.80 0.00 0.00 3.73
576 1384 7.915293 TGTAAAAACATATGGAGTGACGATT 57.085 32.000 7.80 0.00 0.00 3.34
577 1385 7.970384 TGTAAAAACATATGGAGTGACGATTC 58.030 34.615 7.80 0.00 0.00 2.52
578 1386 7.822334 TGTAAAAACATATGGAGTGACGATTCT 59.178 33.333 7.80 0.00 0.00 2.40
579 1387 6.668541 AAAACATATGGAGTGACGATTCTG 57.331 37.500 7.80 0.00 0.00 3.02
580 1388 5.598416 AACATATGGAGTGACGATTCTGA 57.402 39.130 7.80 0.00 0.00 3.27
581 1389 5.193663 ACATATGGAGTGACGATTCTGAG 57.806 43.478 7.80 0.00 0.00 3.35
582 1390 4.889995 ACATATGGAGTGACGATTCTGAGA 59.110 41.667 7.80 0.00 0.00 3.27
583 1391 5.009510 ACATATGGAGTGACGATTCTGAGAG 59.990 44.000 7.80 0.00 0.00 3.20
584 1392 3.073274 TGGAGTGACGATTCTGAGAGA 57.927 47.619 0.00 0.00 0.00 3.10
585 1393 3.421844 TGGAGTGACGATTCTGAGAGAA 58.578 45.455 0.00 0.00 38.78 2.87
586 1394 3.441922 TGGAGTGACGATTCTGAGAGAAG 59.558 47.826 0.00 0.00 37.69 2.85
587 1395 3.434637 GAGTGACGATTCTGAGAGAAGC 58.565 50.000 0.00 0.00 37.69 3.86
588 1396 3.088532 AGTGACGATTCTGAGAGAAGCT 58.911 45.455 0.00 0.00 38.40 3.74
589 1397 3.119531 AGTGACGATTCTGAGAGAAGCTG 60.120 47.826 0.00 0.00 38.40 4.24
590 1398 2.165234 TGACGATTCTGAGAGAAGCTGG 59.835 50.000 0.00 0.00 38.40 4.85
591 1399 1.480137 ACGATTCTGAGAGAAGCTGGG 59.520 52.381 0.00 0.00 38.40 4.45
592 1400 1.202510 CGATTCTGAGAGAAGCTGGGG 60.203 57.143 0.00 0.00 38.40 4.96
593 1401 2.114616 GATTCTGAGAGAAGCTGGGGA 58.885 52.381 0.00 0.00 37.62 4.81
594 1402 1.566211 TTCTGAGAGAAGCTGGGGAG 58.434 55.000 0.00 0.00 29.50 4.30
595 1403 0.325110 TCTGAGAGAAGCTGGGGAGG 60.325 60.000 0.00 0.00 0.00 4.30
596 1404 1.306482 TGAGAGAAGCTGGGGAGGG 60.306 63.158 0.00 0.00 0.00 4.30
597 1405 2.041928 AGAGAAGCTGGGGAGGGG 59.958 66.667 0.00 0.00 0.00 4.79
598 1406 3.093172 GAGAAGCTGGGGAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
624 1432 4.965283 ATTCTGGTAGAATCCCCCAAAA 57.035 40.909 0.00 0.00 40.75 2.44
625 1433 4.316025 TTCTGGTAGAATCCCCCAAAAG 57.684 45.455 0.00 0.00 0.00 2.27
626 1434 3.537337 TCTGGTAGAATCCCCCAAAAGA 58.463 45.455 0.00 0.00 0.00 2.52
627 1435 3.920197 TCTGGTAGAATCCCCCAAAAGAA 59.080 43.478 0.00 0.00 0.00 2.52
628 1436 4.017126 CTGGTAGAATCCCCCAAAAGAAC 58.983 47.826 0.00 0.00 0.00 3.01
629 1437 3.660669 TGGTAGAATCCCCCAAAAGAACT 59.339 43.478 0.00 0.00 0.00 3.01
630 1438 4.017126 GGTAGAATCCCCCAAAAGAACTG 58.983 47.826 0.00 0.00 0.00 3.16
631 1439 3.175438 AGAATCCCCCAAAAGAACTGG 57.825 47.619 0.00 0.00 0.00 4.00
632 1440 1.550524 GAATCCCCCAAAAGAACTGGC 59.449 52.381 0.00 0.00 32.10 4.85
645 1453 2.948979 AGAACTGGCGTGATTTTGTCAA 59.051 40.909 0.00 0.00 38.90 3.18
650 1458 4.759693 ACTGGCGTGATTTTGTCAATCTTA 59.240 37.500 0.00 0.00 38.90 2.10
721 1673 9.084164 GCCTATATTATACTCGGTGTTTACATG 57.916 37.037 0.00 0.00 0.00 3.21
727 1679 9.669887 ATTATACTCGGTGTTTACATGGTAAAA 57.330 29.630 0.00 0.00 0.00 1.52
772 1724 4.095932 TGGTGTGCATTTTACGTTACACAA 59.904 37.500 0.00 0.00 39.50 3.33
811 2024 2.065512 CATGTGAACACGTGGATTCGA 58.934 47.619 21.57 6.69 42.91 3.71
814 2027 2.029380 TGTGAACACGTGGATTCGAGAT 60.029 45.455 21.57 0.00 34.70 2.75
823 2036 4.634004 ACGTGGATTCGAGATGCAAAATTA 59.366 37.500 0.00 0.00 34.70 1.40
849 2062 1.133915 ACCACATATTTACAGGGGCCG 60.134 52.381 0.00 0.00 0.00 6.13
851 2064 2.218603 CACATATTTACAGGGGCCGAC 58.781 52.381 0.00 0.00 0.00 4.79
862 2075 1.602237 GGGCCGACCTGAAAGATGA 59.398 57.895 0.00 0.00 34.07 2.92
877 2091 1.613630 ATGAGCCTCCCGTTGGACT 60.614 57.895 0.00 0.00 35.03 3.85
890 2104 3.254657 CCGTTGGACTCCATTAAAGCAAA 59.745 43.478 0.00 0.00 31.53 3.68
922 2136 2.442188 CGGCACCGACTAACTTCGC 61.442 63.158 2.01 0.00 42.83 4.70
937 2151 3.431725 CGCCTTCGCTTTCCCACC 61.432 66.667 0.00 0.00 0.00 4.61
939 2158 2.434331 CCTTCGCTTTCCCACCCA 59.566 61.111 0.00 0.00 0.00 4.51
941 2160 1.228124 CTTCGCTTTCCCACCCACA 60.228 57.895 0.00 0.00 0.00 4.17
946 2165 3.513566 TTTCCCACCCACACCCCC 61.514 66.667 0.00 0.00 0.00 5.40
1048 2273 4.176851 GCTCCGACGACGAGGACC 62.177 72.222 9.28 0.00 42.66 4.46
1463 2700 2.546373 GCGTACAGTACAGGTTGGTTCA 60.546 50.000 11.37 0.00 0.00 3.18
1465 2702 2.632987 ACAGTACAGGTTGGTTCACC 57.367 50.000 0.00 0.00 37.04 4.02
1470 2707 5.127491 CAGTACAGGTTGGTTCACCTTTTA 58.873 41.667 0.00 0.00 45.76 1.52
1471 2708 5.591067 CAGTACAGGTTGGTTCACCTTTTAA 59.409 40.000 0.00 0.00 45.76 1.52
1473 2710 6.664384 AGTACAGGTTGGTTCACCTTTTAAAA 59.336 34.615 0.00 0.00 45.76 1.52
1474 2711 6.361768 ACAGGTTGGTTCACCTTTTAAAAA 57.638 33.333 1.66 0.00 45.76 1.94
1548 2795 3.838244 ACTGGTAAAGAACACAGCTCA 57.162 42.857 0.00 0.00 32.60 4.26
1554 2802 5.827797 TGGTAAAGAACACAGCTCAATTCTT 59.172 36.000 8.98 8.98 41.92 2.52
1634 2916 5.448654 AGGGCTTACATAATTGCTTGATGA 58.551 37.500 0.00 0.00 0.00 2.92
1635 2917 5.533903 AGGGCTTACATAATTGCTTGATGAG 59.466 40.000 0.00 0.00 0.00 2.90
1636 2918 5.300286 GGGCTTACATAATTGCTTGATGAGT 59.700 40.000 0.00 0.00 0.00 3.41
1637 2919 6.486657 GGGCTTACATAATTGCTTGATGAGTA 59.513 38.462 0.00 0.00 0.00 2.59
1638 2920 7.355778 GGCTTACATAATTGCTTGATGAGTAC 58.644 38.462 0.00 0.00 0.00 2.73
1657 2939 1.741706 ACGTGTGGGATAGAGTGTACG 59.258 52.381 0.00 0.00 36.48 3.67
1703 2987 0.460311 CGAGGGGAACTGCGAACTAT 59.540 55.000 0.00 0.00 0.00 2.12
1737 3126 5.049060 TCAATTGGTAATTTGACTGTCGGTG 60.049 40.000 5.42 0.00 0.00 4.94
1809 3200 2.586258 ACACGCCTCATCATACTGAC 57.414 50.000 0.00 0.00 0.00 3.51
1811 3202 1.136891 CACGCCTCATCATACTGACCA 59.863 52.381 0.00 0.00 0.00 4.02
1837 3231 4.048504 CCGTACTGATTATCGCATTCACA 58.951 43.478 0.00 0.00 0.00 3.58
1969 3401 8.034313 TCCTTATTGAGGCAAGTACTTATGAT 57.966 34.615 8.04 0.00 45.87 2.45
2020 3517 2.044135 GCAAGTACTTTTCGCTGCAAC 58.956 47.619 5.07 0.00 0.00 4.17
2076 3595 3.134458 GCGGCATTAGCTCTTGATTACT 58.866 45.455 0.00 0.00 41.70 2.24
2085 3604 4.455606 AGCTCTTGATTACTATGGTTGGC 58.544 43.478 0.00 0.00 0.00 4.52
2100 3619 2.222027 GTTGGCTGCTACACAACTTCT 58.778 47.619 10.84 0.00 40.83 2.85
2101 3620 3.399330 GTTGGCTGCTACACAACTTCTA 58.601 45.455 10.84 0.00 40.83 2.10
2133 3922 6.225981 AGTTTAGGATTCATTTGATTGCCC 57.774 37.500 0.00 0.00 0.00 5.36
2143 3932 4.467082 TCATTTGATTGCCCAAAGCTACAT 59.533 37.500 0.00 0.00 44.23 2.29
2195 3985 5.009110 TGAAATGTCAAGCGTTTTATGTCCA 59.991 36.000 0.00 0.00 36.51 4.02
2203 3993 6.419413 TCAAGCGTTTTATGTCCACATTTTTC 59.581 34.615 0.00 0.00 37.76 2.29
2244 4038 5.026790 TGGGTTTTGGGATTATTTAGGGTG 58.973 41.667 0.00 0.00 0.00 4.61
2310 4104 5.437289 TCAAACACTGCACCTTTTATGAG 57.563 39.130 0.00 0.00 0.00 2.90
2325 4134 5.796502 TTTATGAGTCTGGAATTTCCCCT 57.203 39.130 12.90 6.09 35.03 4.79
2326 4135 5.796502 TTATGAGTCTGGAATTTCCCCTT 57.203 39.130 12.90 0.00 35.03 3.95
2329 4138 4.407365 TGAGTCTGGAATTTCCCCTTTTC 58.593 43.478 12.90 5.33 35.03 2.29
2352 4161 5.944007 TCTTTTAGTAAGATGGGAGTTTGGC 59.056 40.000 0.00 0.00 0.00 4.52
2356 4165 0.040204 AAGATGGGAGTTTGGCTGGG 59.960 55.000 0.00 0.00 0.00 4.45
2358 4167 2.155197 GATGGGAGTTTGGCTGGGGT 62.155 60.000 0.00 0.00 0.00 4.95
2594 4800 8.698973 TGATTTCCTGTTTGGTACTTTGATTA 57.301 30.769 0.00 0.00 37.07 1.75
2642 4848 2.547299 TGTACCCACCACCTAAAACG 57.453 50.000 0.00 0.00 0.00 3.60
2751 4958 5.874810 TGCTACATTTGATCCAGTTACTGAC 59.125 40.000 14.66 5.68 32.44 3.51
3012 5219 2.705658 TGTAGATAATGGTGCCCTGAGG 59.294 50.000 0.00 0.00 0.00 3.86
3120 5327 5.048713 CCCCACGATTAATAGAAGATTTGCC 60.049 44.000 2.28 0.00 0.00 4.52
3147 5354 2.991540 GGTGAGCTTGTTGGGGGC 60.992 66.667 0.00 0.00 0.00 5.80
3304 5511 3.489738 CCAGCACAAACTAATGCCTATGC 60.490 47.826 0.00 0.00 43.12 3.14
3414 5621 2.282555 CGCTGATGTCCATGTACTTTCG 59.717 50.000 0.00 0.00 0.00 3.46
3592 5799 0.677731 GCTGCAGCAGGTACCAATCA 60.678 55.000 33.36 3.60 41.59 2.57
3632 6067 4.869861 TCATTACGATATTCGATGGGCATG 59.130 41.667 3.62 0.00 43.74 4.06
3633 6068 2.099141 ACGATATTCGATGGGCATGG 57.901 50.000 3.62 0.00 43.74 3.66
3644 6079 3.613193 CGATGGGCATGGCTCAAATATTG 60.613 47.826 19.78 4.98 44.46 1.90
3645 6080 2.749600 TGGGCATGGCTCAAATATTGT 58.250 42.857 19.78 0.00 35.42 2.71
3646 6081 3.908476 TGGGCATGGCTCAAATATTGTA 58.092 40.909 19.78 0.00 35.42 2.41
3647 6082 3.636300 TGGGCATGGCTCAAATATTGTAC 59.364 43.478 19.78 0.00 35.42 2.90
3648 6083 3.636300 GGGCATGGCTCAAATATTGTACA 59.364 43.478 19.78 0.00 0.00 2.90
3763 6203 3.127895 CCTGGAACTACTTGAGAGACTCG 59.872 52.174 0.00 0.00 32.35 4.18
3781 6221 3.056749 ACTCGATGAACACCTACTTGTCC 60.057 47.826 0.00 0.00 0.00 4.02
3866 6306 3.607741 CTGGATGCATTCAGAGTGAGTT 58.392 45.455 28.34 0.00 33.11 3.01
3882 6326 7.271653 CAGAGTGAGTTCTGTCTTCGTAATAAC 59.728 40.741 0.00 0.00 39.76 1.89
3889 6333 8.088981 AGTTCTGTCTTCGTAATAACATCAGTT 58.911 33.333 0.00 0.00 41.74 3.16
3920 6369 5.069781 GGATAGAAGTCCTGTACTGATTGCT 59.930 44.000 0.60 0.00 38.88 3.91
3954 6403 5.117584 TCTCAGTACCGAACATCTAGACTC 58.882 45.833 0.00 0.00 0.00 3.36
4047 6496 3.120060 GCTTAAACCATCTGCTCACACTG 60.120 47.826 0.00 0.00 0.00 3.66
4120 6570 5.472137 GTGAAGAGGTATAGTTTTTGTGCCA 59.528 40.000 0.00 0.00 0.00 4.92
4125 6575 7.402862 AGAGGTATAGTTTTTGTGCCATTACT 58.597 34.615 0.00 0.00 0.00 2.24
4142 6592 6.183360 GCCATTACTTGTCCTCAGTTACATTC 60.183 42.308 0.00 0.00 0.00 2.67
4166 6616 8.079211 TCTTCTTACCATCATTGCTTACTAGT 57.921 34.615 0.00 0.00 0.00 2.57
4167 6617 9.197306 TCTTCTTACCATCATTGCTTACTAGTA 57.803 33.333 0.00 0.00 0.00 1.82
4168 6618 9.469807 CTTCTTACCATCATTGCTTACTAGTAG 57.530 37.037 2.23 0.00 0.00 2.57
4189 6639 4.657436 GCTAGTTAGCTCCACACACTAT 57.343 45.455 3.93 0.00 45.62 2.12
4192 6642 6.570692 GCTAGTTAGCTCCACACACTATTTA 58.429 40.000 3.93 0.00 45.62 1.40
4193 6643 6.697892 GCTAGTTAGCTCCACACACTATTTAG 59.302 42.308 3.93 0.00 45.62 1.85
4194 6644 6.607004 AGTTAGCTCCACACACTATTTAGT 57.393 37.500 0.00 0.00 36.90 2.24
4195 6645 7.005709 AGTTAGCTCCACACACTATTTAGTT 57.994 36.000 0.00 0.00 33.46 2.24
4199 6649 7.241042 AGCTCCACACACTATTTAGTTTAGA 57.759 36.000 0.00 0.00 33.46 2.10
4200 6650 7.676947 AGCTCCACACACTATTTAGTTTAGAA 58.323 34.615 0.00 0.00 33.46 2.10
4201 6651 7.819900 AGCTCCACACACTATTTAGTTTAGAAG 59.180 37.037 0.00 0.00 33.46 2.85
4202 6652 7.603024 GCTCCACACACTATTTAGTTTAGAAGT 59.397 37.037 0.00 0.00 33.46 3.01
4268 6718 2.076100 CTTGCTATCGGTGAAAGCACA 58.924 47.619 0.00 0.00 45.41 4.57
4281 6731 2.797177 AAGCACAGAAGAATCCTCCC 57.203 50.000 0.00 0.00 0.00 4.30
4282 6732 1.661463 AGCACAGAAGAATCCTCCCA 58.339 50.000 0.00 0.00 0.00 4.37
4363 6967 8.232913 AGAATTAAAGTTGAACTACCAAAGCA 57.767 30.769 0.00 0.00 0.00 3.91
4425 7033 2.400399 TCCAGTGAAGTTAAAGCGACG 58.600 47.619 0.00 0.00 0.00 5.12
4492 7100 1.135489 CGCGAAGTACTGAAGCTGGTA 60.135 52.381 0.00 0.00 0.00 3.25
4591 7199 1.670967 GCCAAGGTTTGCATCTGCTTC 60.671 52.381 3.53 0.00 42.66 3.86
4832 7446 2.100252 GGCCTACGCTCAGTATACACAA 59.900 50.000 5.50 0.00 34.34 3.33
5336 8287 1.734655 TCCAGCCTCCAGTTCTCTTT 58.265 50.000 0.00 0.00 0.00 2.52
5339 8290 3.650942 TCCAGCCTCCAGTTCTCTTTTTA 59.349 43.478 0.00 0.00 0.00 1.52
5341 8292 4.006319 CAGCCTCCAGTTCTCTTTTTAGG 58.994 47.826 0.00 0.00 0.00 2.69
5374 8326 6.907212 CGGCACACATAAATCATAAAGAACTC 59.093 38.462 0.00 0.00 0.00 3.01
5439 8404 6.825721 ACAAAAGACAGGATCATATCACTTCC 59.174 38.462 0.00 0.00 0.00 3.46
5462 8427 5.236047 CCATCTCTTCAATCTGAATCCGAAC 59.764 44.000 0.00 0.00 35.59 3.95
5614 8587 6.543465 TCAAATAGTGAAGGAATGCTGTATGG 59.457 38.462 0.00 0.00 31.51 2.74
5628 8604 5.237815 TGCTGTATGGAGAAGTTAACAGTG 58.762 41.667 8.61 0.00 37.31 3.66
5629 8605 4.093556 GCTGTATGGAGAAGTTAACAGTGC 59.906 45.833 8.61 0.00 37.31 4.40
5630 8606 5.482908 CTGTATGGAGAAGTTAACAGTGCT 58.517 41.667 8.61 0.00 31.82 4.40
5673 8649 2.407562 ACATTTTCCAAAGCCCTGGTT 58.592 42.857 1.80 0.00 37.74 3.67
5748 8724 7.339466 ACAGCAATACCCTTCCTAAAATACAAG 59.661 37.037 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.106351 ACAACACCCGCATTGAAGCA 61.106 50.000 0.00 0.00 0.00 3.91
27 28 0.533085 TCGAACAACACCCGCATTGA 60.533 50.000 0.00 0.00 0.00 2.57
30 31 0.802494 GAATCGAACAACACCCGCAT 59.198 50.000 0.00 0.00 0.00 4.73
55 56 0.770166 TGGTCAATGACTGGGGTCCA 60.770 55.000 13.53 0.00 41.47 4.02
63 64 4.281688 CCAATTCTTTGGTGGTCAATGACT 59.718 41.667 13.53 0.00 46.27 3.41
64 65 4.559153 CCAATTCTTTGGTGGTCAATGAC 58.441 43.478 4.51 4.51 46.27 3.06
125 126 6.014771 TCATAGTGGTAGGAGAGCTCTTTA 57.985 41.667 19.36 11.03 31.99 1.85
136 275 5.396884 CCTTTCCCTTCTTCATAGTGGTAGG 60.397 48.000 0.00 0.00 0.00 3.18
146 285 5.073437 TCATTTTCCCTTTCCCTTCTTCA 57.927 39.130 0.00 0.00 0.00 3.02
273 417 9.655769 GTCATAGCACATTTAACATAGTTCATG 57.344 33.333 0.00 0.00 40.78 3.07
298 442 7.121168 ACATCGATGAAAACAAATGACATAGGT 59.879 33.333 31.33 0.00 0.00 3.08
316 469 1.835121 CAAGCCATGCAACATCGATG 58.165 50.000 23.68 23.68 0.00 3.84
343 496 0.551624 CCCCTTTACCCCCTCCTCAA 60.552 60.000 0.00 0.00 0.00 3.02
344 497 1.084084 CCCCTTTACCCCCTCCTCA 59.916 63.158 0.00 0.00 0.00 3.86
346 499 2.464550 CCCCCTTTACCCCCTCCT 59.535 66.667 0.00 0.00 0.00 3.69
414 1222 1.529226 TGACGTTTTGGTAGGCATGG 58.471 50.000 0.00 0.00 0.00 3.66
415 1223 4.574421 TCATATGACGTTTTGGTAGGCATG 59.426 41.667 0.00 0.00 0.00 4.06
416 1224 4.776349 TCATATGACGTTTTGGTAGGCAT 58.224 39.130 0.00 0.00 0.00 4.40
417 1225 4.188462 CTCATATGACGTTTTGGTAGGCA 58.812 43.478 0.00 0.00 0.00 4.75
418 1226 3.002348 GCTCATATGACGTTTTGGTAGGC 59.998 47.826 0.00 0.00 0.00 3.93
419 1227 3.560068 GGCTCATATGACGTTTTGGTAGG 59.440 47.826 0.00 0.00 0.00 3.18
420 1228 4.188462 TGGCTCATATGACGTTTTGGTAG 58.812 43.478 0.00 0.00 0.00 3.18
421 1229 4.188462 CTGGCTCATATGACGTTTTGGTA 58.812 43.478 0.00 0.00 0.00 3.25
422 1230 3.009723 CTGGCTCATATGACGTTTTGGT 58.990 45.455 0.00 0.00 0.00 3.67
423 1231 3.009723 ACTGGCTCATATGACGTTTTGG 58.990 45.455 0.00 0.00 0.00 3.28
424 1232 4.393062 AGAACTGGCTCATATGACGTTTTG 59.607 41.667 0.00 0.00 0.00 2.44
425 1233 4.579869 AGAACTGGCTCATATGACGTTTT 58.420 39.130 0.00 0.00 0.00 2.43
426 1234 4.207891 AGAACTGGCTCATATGACGTTT 57.792 40.909 0.00 0.00 0.00 3.60
427 1235 3.895232 AGAACTGGCTCATATGACGTT 57.105 42.857 0.00 3.31 0.00 3.99
428 1236 3.895232 AAGAACTGGCTCATATGACGT 57.105 42.857 0.00 0.00 0.00 4.34
429 1237 4.631377 TCAAAAGAACTGGCTCATATGACG 59.369 41.667 0.00 0.00 0.00 4.35
430 1238 5.448360 GCTCAAAAGAACTGGCTCATATGAC 60.448 44.000 0.00 0.00 0.00 3.06
431 1239 4.637534 GCTCAAAAGAACTGGCTCATATGA 59.362 41.667 5.07 5.07 0.00 2.15
432 1240 4.495349 CGCTCAAAAGAACTGGCTCATATG 60.495 45.833 0.00 0.00 0.00 1.78
433 1241 3.624861 CGCTCAAAAGAACTGGCTCATAT 59.375 43.478 0.00 0.00 0.00 1.78
434 1242 3.002791 CGCTCAAAAGAACTGGCTCATA 58.997 45.455 0.00 0.00 0.00 2.15
435 1243 1.808945 CGCTCAAAAGAACTGGCTCAT 59.191 47.619 0.00 0.00 0.00 2.90
436 1244 1.229428 CGCTCAAAAGAACTGGCTCA 58.771 50.000 0.00 0.00 0.00 4.26
437 1245 0.519077 CCGCTCAAAAGAACTGGCTC 59.481 55.000 0.00 0.00 0.00 4.70
438 1246 0.179018 ACCGCTCAAAAGAACTGGCT 60.179 50.000 0.00 0.00 0.00 4.75
439 1247 0.668535 AACCGCTCAAAAGAACTGGC 59.331 50.000 0.00 0.00 0.00 4.85
440 1248 2.222027 AGAACCGCTCAAAAGAACTGG 58.778 47.619 0.00 0.00 0.00 4.00
441 1249 2.224314 GGAGAACCGCTCAAAAGAACTG 59.776 50.000 0.00 0.00 45.81 3.16
442 1250 2.495084 GGAGAACCGCTCAAAAGAACT 58.505 47.619 0.00 0.00 45.81 3.01
443 1251 1.535896 GGGAGAACCGCTCAAAAGAAC 59.464 52.381 0.00 0.00 45.81 3.01
444 1252 1.142060 TGGGAGAACCGCTCAAAAGAA 59.858 47.619 0.00 0.00 45.81 2.52
445 1253 0.762418 TGGGAGAACCGCTCAAAAGA 59.238 50.000 0.00 0.00 45.81 2.52
446 1254 1.160137 CTGGGAGAACCGCTCAAAAG 58.840 55.000 0.00 0.00 45.81 2.27
447 1255 0.762418 TCTGGGAGAACCGCTCAAAA 59.238 50.000 0.00 0.00 45.81 2.44
448 1256 0.762418 TTCTGGGAGAACCGCTCAAA 59.238 50.000 0.00 0.00 45.81 2.69
449 1257 0.762418 TTTCTGGGAGAACCGCTCAA 59.238 50.000 0.00 0.00 45.81 3.02
450 1258 0.034896 GTTTCTGGGAGAACCGCTCA 59.965 55.000 0.00 0.00 45.81 4.26
451 1259 1.014564 CGTTTCTGGGAGAACCGCTC 61.015 60.000 0.00 0.00 44.64 5.03
452 1260 1.004918 CGTTTCTGGGAGAACCGCT 60.005 57.895 0.00 0.00 44.64 5.52
453 1261 3.562635 CGTTTCTGGGAGAACCGC 58.437 61.111 0.00 0.00 44.64 5.68
454 1262 2.033194 GGCGTTTCTGGGAGAACCG 61.033 63.158 0.00 0.00 42.03 4.44
455 1263 1.674651 GGGCGTTTCTGGGAGAACC 60.675 63.158 0.00 0.00 33.26 3.62
456 1264 1.674651 GGGGCGTTTCTGGGAGAAC 60.675 63.158 0.00 0.00 33.26 3.01
457 1265 2.754375 GGGGCGTTTCTGGGAGAA 59.246 61.111 0.00 0.00 31.28 2.87
458 1266 3.327404 GGGGGCGTTTCTGGGAGA 61.327 66.667 0.00 0.00 0.00 3.71
459 1267 3.330720 AGGGGGCGTTTCTGGGAG 61.331 66.667 0.00 0.00 0.00 4.30
460 1268 3.327404 GAGGGGGCGTTTCTGGGA 61.327 66.667 0.00 0.00 0.00 4.37
461 1269 4.426313 GGAGGGGGCGTTTCTGGG 62.426 72.222 0.00 0.00 0.00 4.45
462 1270 4.426313 GGGAGGGGGCGTTTCTGG 62.426 72.222 0.00 0.00 0.00 3.86
463 1271 4.426313 GGGGAGGGGGCGTTTCTG 62.426 72.222 0.00 0.00 0.00 3.02
464 1272 4.995058 TGGGGAGGGGGCGTTTCT 62.995 66.667 0.00 0.00 0.00 2.52
465 1273 4.426313 CTGGGGAGGGGGCGTTTC 62.426 72.222 0.00 0.00 0.00 2.78
471 1279 3.093172 GAGAAGCTGGGGAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
472 1280 2.257541 TAGGAGAAGCTGGGGAGGGG 62.258 65.000 0.00 0.00 0.00 4.79
473 1281 0.762461 CTAGGAGAAGCTGGGGAGGG 60.762 65.000 0.00 0.00 0.00 4.30
474 1282 0.263172 TCTAGGAGAAGCTGGGGAGG 59.737 60.000 0.00 0.00 0.00 4.30
475 1283 2.166907 TTCTAGGAGAAGCTGGGGAG 57.833 55.000 0.00 0.00 29.50 4.30
476 1284 2.683768 GATTCTAGGAGAAGCTGGGGA 58.316 52.381 0.00 0.00 37.62 4.81
477 1285 1.342819 CGATTCTAGGAGAAGCTGGGG 59.657 57.143 3.28 0.00 38.40 4.96
478 1286 1.270041 GCGATTCTAGGAGAAGCTGGG 60.270 57.143 3.28 0.00 38.40 4.45
479 1287 1.270041 GGCGATTCTAGGAGAAGCTGG 60.270 57.143 3.28 0.00 38.40 4.85
480 1288 1.410517 TGGCGATTCTAGGAGAAGCTG 59.589 52.381 3.28 0.00 38.40 4.24
481 1289 1.410882 GTGGCGATTCTAGGAGAAGCT 59.589 52.381 3.28 0.00 38.40 3.74
482 1290 1.137086 TGTGGCGATTCTAGGAGAAGC 59.863 52.381 0.00 0.00 37.69 3.86
483 1291 3.190874 GTTGTGGCGATTCTAGGAGAAG 58.809 50.000 0.00 0.00 37.69 2.85
484 1292 2.565391 TGTTGTGGCGATTCTAGGAGAA 59.435 45.455 0.00 0.00 38.78 2.87
485 1293 2.176045 TGTTGTGGCGATTCTAGGAGA 58.824 47.619 0.00 0.00 0.00 3.71
486 1294 2.672961 TGTTGTGGCGATTCTAGGAG 57.327 50.000 0.00 0.00 0.00 3.69
487 1295 4.955811 ATATGTTGTGGCGATTCTAGGA 57.044 40.909 0.00 0.00 0.00 2.94
488 1296 6.377327 AAAATATGTTGTGGCGATTCTAGG 57.623 37.500 0.00 0.00 0.00 3.02
542 1350 9.778741 CTCCATATGTTTTTACAATCCTAGCTA 57.221 33.333 1.24 0.00 0.00 3.32
543 1351 8.275040 ACTCCATATGTTTTTACAATCCTAGCT 58.725 33.333 1.24 0.00 0.00 3.32
544 1352 8.345565 CACTCCATATGTTTTTACAATCCTAGC 58.654 37.037 1.24 0.00 0.00 3.42
545 1353 9.613428 TCACTCCATATGTTTTTACAATCCTAG 57.387 33.333 1.24 0.00 0.00 3.02
546 1354 9.391006 GTCACTCCATATGTTTTTACAATCCTA 57.609 33.333 1.24 0.00 0.00 2.94
547 1355 7.065803 CGTCACTCCATATGTTTTTACAATCCT 59.934 37.037 1.24 0.00 0.00 3.24
548 1356 7.065324 TCGTCACTCCATATGTTTTTACAATCC 59.935 37.037 1.24 0.00 0.00 3.01
549 1357 7.970384 TCGTCACTCCATATGTTTTTACAATC 58.030 34.615 1.24 0.00 0.00 2.67
550 1358 7.915293 TCGTCACTCCATATGTTTTTACAAT 57.085 32.000 1.24 0.00 0.00 2.71
551 1359 7.915293 ATCGTCACTCCATATGTTTTTACAA 57.085 32.000 1.24 0.00 0.00 2.41
552 1360 7.822334 AGAATCGTCACTCCATATGTTTTTACA 59.178 33.333 1.24 0.00 0.00 2.41
553 1361 8.116753 CAGAATCGTCACTCCATATGTTTTTAC 58.883 37.037 1.24 0.00 0.00 2.01
554 1362 8.038351 TCAGAATCGTCACTCCATATGTTTTTA 58.962 33.333 1.24 0.00 0.00 1.52
555 1363 6.878923 TCAGAATCGTCACTCCATATGTTTTT 59.121 34.615 1.24 0.00 0.00 1.94
556 1364 6.406370 TCAGAATCGTCACTCCATATGTTTT 58.594 36.000 1.24 0.00 0.00 2.43
557 1365 5.977635 TCAGAATCGTCACTCCATATGTTT 58.022 37.500 1.24 0.00 0.00 2.83
558 1366 5.360999 TCTCAGAATCGTCACTCCATATGTT 59.639 40.000 1.24 0.00 0.00 2.71
559 1367 4.889995 TCTCAGAATCGTCACTCCATATGT 59.110 41.667 1.24 0.00 0.00 2.29
560 1368 5.240403 TCTCTCAGAATCGTCACTCCATATG 59.760 44.000 0.00 0.00 0.00 1.78
561 1369 5.380900 TCTCTCAGAATCGTCACTCCATAT 58.619 41.667 0.00 0.00 0.00 1.78
562 1370 4.781934 TCTCTCAGAATCGTCACTCCATA 58.218 43.478 0.00 0.00 0.00 2.74
563 1371 3.625853 TCTCTCAGAATCGTCACTCCAT 58.374 45.455 0.00 0.00 0.00 3.41
564 1372 3.073274 TCTCTCAGAATCGTCACTCCA 57.927 47.619 0.00 0.00 0.00 3.86
565 1373 3.733684 GCTTCTCTCAGAATCGTCACTCC 60.734 52.174 0.00 0.00 33.13 3.85
566 1374 3.128589 AGCTTCTCTCAGAATCGTCACTC 59.871 47.826 0.00 0.00 33.13 3.51
567 1375 3.088532 AGCTTCTCTCAGAATCGTCACT 58.911 45.455 0.00 0.00 33.13 3.41
568 1376 3.178267 CAGCTTCTCTCAGAATCGTCAC 58.822 50.000 0.00 0.00 33.13 3.67
569 1377 2.165234 CCAGCTTCTCTCAGAATCGTCA 59.835 50.000 0.00 0.00 33.13 4.35
570 1378 2.481104 CCCAGCTTCTCTCAGAATCGTC 60.481 54.545 0.00 0.00 33.13 4.20
571 1379 1.480137 CCCAGCTTCTCTCAGAATCGT 59.520 52.381 0.00 0.00 33.13 3.73
572 1380 1.202510 CCCCAGCTTCTCTCAGAATCG 60.203 57.143 0.00 0.00 33.13 3.34
573 1381 2.102925 CTCCCCAGCTTCTCTCAGAATC 59.897 54.545 0.00 0.00 33.13 2.52
574 1382 2.117865 CTCCCCAGCTTCTCTCAGAAT 58.882 52.381 0.00 0.00 33.13 2.40
575 1383 1.566211 CTCCCCAGCTTCTCTCAGAA 58.434 55.000 0.00 0.00 32.50 3.02
576 1384 0.325110 CCTCCCCAGCTTCTCTCAGA 60.325 60.000 0.00 0.00 0.00 3.27
577 1385 1.336632 CCCTCCCCAGCTTCTCTCAG 61.337 65.000 0.00 0.00 0.00 3.35
578 1386 1.306482 CCCTCCCCAGCTTCTCTCA 60.306 63.158 0.00 0.00 0.00 3.27
579 1387 2.069430 CCCCTCCCCAGCTTCTCTC 61.069 68.421 0.00 0.00 0.00 3.20
580 1388 2.041928 CCCCTCCCCAGCTTCTCT 59.958 66.667 0.00 0.00 0.00 3.10
581 1389 3.093172 CCCCCTCCCCAGCTTCTC 61.093 72.222 0.00 0.00 0.00 2.87
603 1411 4.544152 TCTTTTGGGGGATTCTACCAGAAT 59.456 41.667 1.09 1.09 46.84 2.40
604 1412 3.920197 TCTTTTGGGGGATTCTACCAGAA 59.080 43.478 0.00 0.00 38.78 3.02
605 1413 3.537337 TCTTTTGGGGGATTCTACCAGA 58.463 45.455 0.00 0.00 35.37 3.86
606 1414 4.017126 GTTCTTTTGGGGGATTCTACCAG 58.983 47.826 0.00 0.00 35.37 4.00
607 1415 3.660669 AGTTCTTTTGGGGGATTCTACCA 59.339 43.478 0.00 0.00 0.00 3.25
608 1416 4.017126 CAGTTCTTTTGGGGGATTCTACC 58.983 47.826 0.00 0.00 0.00 3.18
609 1417 4.017126 CCAGTTCTTTTGGGGGATTCTAC 58.983 47.826 0.00 0.00 31.87 2.59
610 1418 3.563479 GCCAGTTCTTTTGGGGGATTCTA 60.563 47.826 0.00 0.00 36.19 2.10
611 1419 2.823152 GCCAGTTCTTTTGGGGGATTCT 60.823 50.000 0.00 0.00 36.19 2.40
612 1420 1.550524 GCCAGTTCTTTTGGGGGATTC 59.449 52.381 0.00 0.00 36.19 2.52
613 1421 1.644509 GCCAGTTCTTTTGGGGGATT 58.355 50.000 0.00 0.00 36.19 3.01
614 1422 0.611896 CGCCAGTTCTTTTGGGGGAT 60.612 55.000 0.81 0.00 42.97 3.85
615 1423 1.228429 CGCCAGTTCTTTTGGGGGA 60.228 57.895 0.81 0.00 42.97 4.81
616 1424 3.365535 CGCCAGTTCTTTTGGGGG 58.634 61.111 0.81 0.00 42.97 5.40
618 1426 1.247567 ATCACGCCAGTTCTTTTGGG 58.752 50.000 0.00 0.00 36.19 4.12
619 1427 3.369546 AAATCACGCCAGTTCTTTTGG 57.630 42.857 0.00 0.00 38.78 3.28
620 1428 4.111916 ACAAAATCACGCCAGTTCTTTTG 58.888 39.130 0.00 0.00 40.88 2.44
621 1429 4.142271 TGACAAAATCACGCCAGTTCTTTT 60.142 37.500 0.00 0.00 29.99 2.27
622 1430 3.380004 TGACAAAATCACGCCAGTTCTTT 59.620 39.130 0.00 0.00 29.99 2.52
623 1431 2.948979 TGACAAAATCACGCCAGTTCTT 59.051 40.909 0.00 0.00 29.99 2.52
624 1432 2.571212 TGACAAAATCACGCCAGTTCT 58.429 42.857 0.00 0.00 29.99 3.01
625 1433 3.347958 TTGACAAAATCACGCCAGTTC 57.652 42.857 0.00 0.00 36.92 3.01
626 1434 3.569701 AGATTGACAAAATCACGCCAGTT 59.430 39.130 0.00 0.00 36.92 3.16
627 1435 3.149196 AGATTGACAAAATCACGCCAGT 58.851 40.909 0.00 0.00 36.92 4.00
628 1436 3.837213 AGATTGACAAAATCACGCCAG 57.163 42.857 0.00 0.00 36.92 4.85
629 1437 5.240623 ACTTAAGATTGACAAAATCACGCCA 59.759 36.000 10.09 0.00 36.92 5.69
630 1438 5.699839 ACTTAAGATTGACAAAATCACGCC 58.300 37.500 10.09 0.00 36.92 5.68
631 1439 5.795441 GGACTTAAGATTGACAAAATCACGC 59.205 40.000 10.09 0.00 36.92 5.34
632 1440 6.898041 TGGACTTAAGATTGACAAAATCACG 58.102 36.000 10.09 0.00 36.92 4.35
727 1679 7.550551 CACCATCTTATGAGTTTACACATGTCT 59.449 37.037 0.00 0.00 0.00 3.41
735 1687 6.683974 ATGCACACCATCTTATGAGTTTAC 57.316 37.500 0.00 0.00 0.00 2.01
823 2036 6.951778 GGCCCCTGTAAATATGTGGTATTATT 59.048 38.462 0.00 0.00 32.70 1.40
830 2043 1.142060 TCGGCCCCTGTAAATATGTGG 59.858 52.381 0.00 0.00 0.00 4.17
849 2062 1.134250 GGGAGGCTCATCTTTCAGGTC 60.134 57.143 17.69 0.00 0.00 3.85
851 2064 0.179062 CGGGAGGCTCATCTTTCAGG 60.179 60.000 17.69 0.00 0.00 3.86
862 2075 3.003763 GGAGTCCAACGGGAGGCT 61.004 66.667 3.60 0.00 46.12 4.58
877 2091 4.152759 CGTTAGGACGTTTGCTTTAATGGA 59.847 41.667 0.00 0.00 44.08 3.41
922 2136 1.971695 GTGGGTGGGAAAGCGAAGG 60.972 63.158 0.00 0.00 0.00 3.46
1474 2711 9.505995 CCAGTAAATTAACGCGGTATAATTTTT 57.494 29.630 28.20 19.96 40.40 1.94
1475 2712 8.676401 ACCAGTAAATTAACGCGGTATAATTTT 58.324 29.630 28.20 18.64 40.40 1.82
1476 2713 8.212317 ACCAGTAAATTAACGCGGTATAATTT 57.788 30.769 27.14 27.14 41.83 1.82
1477 2714 7.790823 ACCAGTAAATTAACGCGGTATAATT 57.209 32.000 12.47 14.96 34.14 1.40
1481 2718 7.495279 TGAATTACCAGTAAATTAACGCGGTAT 59.505 33.333 12.47 0.00 34.39 2.73
1483 2720 5.642919 TGAATTACCAGTAAATTAACGCGGT 59.357 36.000 12.47 6.42 35.21 5.68
1485 2722 6.681178 CACTGAATTACCAGTAAATTAACGCG 59.319 38.462 3.53 3.53 44.87 6.01
1486 2723 7.745015 TCACTGAATTACCAGTAAATTAACGC 58.255 34.615 0.00 0.00 44.87 4.84
1521 2768 8.007405 AGCTGTGTTCTTTACCAGTTTATTTT 57.993 30.769 0.00 0.00 31.53 1.82
1634 2916 3.083122 ACACTCTATCCCACACGTACT 57.917 47.619 0.00 0.00 0.00 2.73
1635 2917 3.242543 CGTACACTCTATCCCACACGTAC 60.243 52.174 0.00 0.00 0.00 3.67
1636 2918 2.938451 CGTACACTCTATCCCACACGTA 59.062 50.000 0.00 0.00 0.00 3.57
1637 2919 1.741706 CGTACACTCTATCCCACACGT 59.258 52.381 0.00 0.00 0.00 4.49
1638 2920 2.011947 TCGTACACTCTATCCCACACG 58.988 52.381 0.00 0.00 0.00 4.49
1657 2939 3.149196 TCACATCAAGCAAGGGAAAGTC 58.851 45.455 0.00 0.00 0.00 3.01
1703 2987 8.859090 GTCAAATTACCAATTGATCCATGGATA 58.141 33.333 27.38 13.52 37.66 2.59
1737 3126 9.659830 AACAAAACGATTTTAGTTACTGATGAC 57.340 29.630 0.00 0.00 0.00 3.06
1809 3200 1.779569 GATAATCAGTACGGCCGTGG 58.220 55.000 40.02 27.41 0.00 4.94
1811 3202 0.318445 GCGATAATCAGTACGGCCGT 60.318 55.000 36.01 36.01 0.00 5.68
1837 3231 3.370840 TGCTAACATGCCAGAATCCTT 57.629 42.857 0.00 0.00 0.00 3.36
1969 3401 6.405278 TTCAGAGTCACTGTCACTCATAAA 57.595 37.500 14.34 2.55 45.86 1.40
2020 3517 1.475280 CAATCAATCAGGCCCACACTG 59.525 52.381 0.00 0.00 37.30 3.66
2076 3595 2.039746 AGTTGTGTAGCAGCCAACCATA 59.960 45.455 8.22 0.00 39.36 2.74
2085 3604 7.849804 AACCATAATAGAAGTTGTGTAGCAG 57.150 36.000 0.00 0.00 0.00 4.24
2133 3922 2.793585 CGCAAGCATCCATGTAGCTTTG 60.794 50.000 12.19 9.78 45.57 2.77
2217 4011 7.240828 ACCCTAAATAATCCCAAAACCCAAAAT 59.759 33.333 0.00 0.00 0.00 1.82
2221 4015 5.026790 CACCCTAAATAATCCCAAAACCCA 58.973 41.667 0.00 0.00 0.00 4.51
2244 4038 2.819608 ACCAAACTCCACATGCATGTAC 59.180 45.455 30.92 0.00 39.39 2.90
2310 4104 5.808366 AAAGAAAAGGGGAAATTCCAGAC 57.192 39.130 14.68 3.53 38.64 3.51
2325 4134 8.856103 CCAAACTCCCATCTTACTAAAAGAAAA 58.144 33.333 0.00 0.00 0.00 2.29
2326 4135 7.039993 GCCAAACTCCCATCTTACTAAAAGAAA 60.040 37.037 0.00 0.00 0.00 2.52
2329 4138 5.946377 AGCCAAACTCCCATCTTACTAAAAG 59.054 40.000 0.00 0.00 0.00 2.27
2352 4161 3.412386 CAGACAAGGAAAACTACCCCAG 58.588 50.000 0.00 0.00 0.00 4.45
2356 4165 2.160205 GGGCAGACAAGGAAAACTACC 58.840 52.381 0.00 0.00 0.00 3.18
2358 4167 3.806949 ATGGGCAGACAAGGAAAACTA 57.193 42.857 0.00 0.00 0.00 2.24
2436 4642 4.988540 GTGCTTCTTGGTTCCCAAATTTAC 59.011 41.667 0.00 0.00 43.44 2.01
2594 4800 7.606456 TCGGAATAGAGAGTTAAACTGCAAATT 59.394 33.333 0.00 0.00 0.00 1.82
2610 4816 3.181478 GGTGGGTACAAGTCGGAATAGAG 60.181 52.174 0.00 0.00 0.00 2.43
2617 4823 1.004200 GGTGGTGGGTACAAGTCGG 60.004 63.158 0.00 0.00 0.00 4.79
2618 4824 1.259609 TAGGTGGTGGGTACAAGTCG 58.740 55.000 0.00 0.00 0.00 4.18
2668 4875 7.904461 CGAAAAGCAACAAACAGAAATGAAAAT 59.096 29.630 0.00 0.00 0.00 1.82
2751 4958 6.935741 TTTGGGGTATCAATAATGAACTCG 57.064 37.500 0.00 0.00 39.49 4.18
2865 5072 0.322906 CAGCAGGTTCCCCTCCTTTC 60.323 60.000 0.00 0.00 39.89 2.62
3012 5219 4.679905 CGGGGTATCCTAACTGAACAGAAC 60.680 50.000 8.87 0.00 0.00 3.01
3120 5327 1.898574 AAGCTCACCAAGGGTTGCG 60.899 57.895 0.00 0.00 37.56 4.85
3147 5354 2.146342 CTATATGCAAGCCCAACTCGG 58.854 52.381 0.00 0.00 0.00 4.63
3156 5363 3.808728 TCCCACAGAACTATATGCAAGC 58.191 45.455 0.00 0.00 0.00 4.01
3414 5621 6.415573 AGTTATGTAGGATTTCAACCCAGAC 58.584 40.000 0.00 0.00 0.00 3.51
3592 5799 6.096987 TCGTAATGAGCTTTGTAGAGGATTCT 59.903 38.462 0.00 0.00 37.46 2.40
3632 6067 6.583562 AGAGGTACTGTACAATATTTGAGCC 58.416 40.000 18.79 0.00 41.55 4.70
3633 6068 9.765795 ATAAGAGGTACTGTACAATATTTGAGC 57.234 33.333 18.79 0.00 41.55 4.26
3644 6079 5.008811 AGCATCGTGATAAGAGGTACTGTAC 59.991 44.000 9.46 9.46 41.55 2.90
3645 6080 5.131067 AGCATCGTGATAAGAGGTACTGTA 58.869 41.667 0.00 0.00 41.55 2.74
3646 6081 3.954904 AGCATCGTGATAAGAGGTACTGT 59.045 43.478 0.00 0.00 41.55 3.55
3647 6082 4.576216 AGCATCGTGATAAGAGGTACTG 57.424 45.455 0.00 0.00 41.55 2.74
3763 6203 3.600388 CTGGGACAAGTAGGTGTTCATC 58.400 50.000 0.00 0.00 38.70 2.92
3781 6221 2.171448 AGCAGTAACAGGATTAGGCTGG 59.829 50.000 0.00 0.00 0.00 4.85
3866 6306 6.310467 GCAACTGATGTTATTACGAAGACAGA 59.690 38.462 0.00 0.00 34.60 3.41
3882 6326 6.426328 GGACTTCTATCCAATAGCAACTGATG 59.574 42.308 0.00 0.00 38.77 3.07
3889 6333 6.040955 CAGTACAGGACTTCTATCCAATAGCA 59.959 42.308 0.00 0.00 41.73 3.49
3920 6369 6.263842 TGTTCGGTACTGAGAAGAGAGTTTAA 59.736 38.462 4.23 0.00 0.00 1.52
4026 6475 3.438087 CCAGTGTGAGCAGATGGTTTAAG 59.562 47.826 0.00 0.00 31.42 1.85
4047 6496 2.072298 GACTCAATGTGTGACTCTGCC 58.928 52.381 0.00 0.00 31.13 4.85
4120 6570 8.598041 AGAAGAATGTAACTGAGGACAAGTAAT 58.402 33.333 0.00 0.00 0.00 1.89
4125 6575 7.159372 GGTAAGAAGAATGTAACTGAGGACAA 58.841 38.462 0.00 0.00 0.00 3.18
4142 6592 9.469807 CTACTAGTAAGCAATGATGGTAAGAAG 57.530 37.037 3.76 0.00 35.91 2.85
4168 6618 7.630944 ACTAAATAGTGTGTGGAGCTAACTAGC 60.631 40.741 0.17 0.17 41.36 3.42
4214 6664 9.167311 CAAACAAATCTTCCTAGTAACTATGCT 57.833 33.333 0.00 0.00 0.00 3.79
4216 6666 9.449719 ACCAAACAAATCTTCCTAGTAACTATG 57.550 33.333 0.00 0.00 0.00 2.23
4227 6677 5.774498 AGTCTCAACCAAACAAATCTTCC 57.226 39.130 0.00 0.00 0.00 3.46
4268 6718 2.252408 AGGGAGATGGGAGGATTCTTCT 59.748 50.000 0.00 0.00 0.00 2.85
4272 6722 1.696884 GTCAGGGAGATGGGAGGATTC 59.303 57.143 0.00 0.00 0.00 2.52
4281 6731 2.686915 GGAAAATGCAGTCAGGGAGATG 59.313 50.000 0.00 0.00 0.00 2.90
4282 6732 2.309755 TGGAAAATGCAGTCAGGGAGAT 59.690 45.455 0.00 0.00 0.00 2.75
4425 7033 6.744537 GCATAGACAAATCACAAGTCATTGTC 59.255 38.462 8.48 8.48 46.90 3.18
4591 7199 0.827089 TTGTGTGCCATGGGGTTGAG 60.827 55.000 15.13 0.00 36.17 3.02
4616 7227 5.057149 TGGTCTGAAGCTAAGAACTGAAAC 58.943 41.667 13.84 0.00 32.30 2.78
4832 7446 0.889306 GTCTGTAGAAGCCGACACCT 59.111 55.000 0.00 0.00 0.00 4.00
5311 8225 2.703007 AGAACTGGAGGCTGGATGTATC 59.297 50.000 0.00 0.00 0.00 2.24
5336 8287 4.268797 TGTGTGCCGTATTGTACCTAAA 57.731 40.909 0.00 0.00 0.00 1.85
5339 8290 4.475051 TTATGTGTGCCGTATTGTACCT 57.525 40.909 0.00 0.00 0.00 3.08
5341 8292 6.352682 TGATTTATGTGTGCCGTATTGTAC 57.647 37.500 0.00 0.00 0.00 2.90
5374 8326 7.095144 TGTCTCTTTTGTACTCTAGTTCTCGAG 60.095 40.741 5.93 5.93 0.00 4.04
5439 8404 5.236047 GGTTCGGATTCAGATTGAAGAGATG 59.764 44.000 0.00 0.00 40.05 2.90
5462 8427 5.059833 GGTTAGATCTTCCACTGCTTATGG 58.940 45.833 0.00 0.00 38.71 2.74
5595 8568 3.776969 TCTCCATACAGCATTCCTTCACT 59.223 43.478 0.00 0.00 0.00 3.41
5614 8587 7.067737 AGGTAGAGATAGCACTGTTAACTTCTC 59.932 40.741 7.22 7.10 0.00 2.87
5628 8604 5.596772 ACTGAAGAGGAAAGGTAGAGATAGC 59.403 44.000 0.00 0.00 0.00 2.97
5629 8605 7.776030 TGTACTGAAGAGGAAAGGTAGAGATAG 59.224 40.741 0.00 0.00 0.00 2.08
5630 8606 7.640313 TGTACTGAAGAGGAAAGGTAGAGATA 58.360 38.462 0.00 0.00 0.00 1.98
5673 8649 8.477419 ACCTTGGAAGTAAAGATGATTTTTCA 57.523 30.769 0.00 0.00 0.00 2.69
5748 8724 7.799784 TCTAATTTAGTGTTTTTGCGGTACTC 58.200 34.615 3.45 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.