AutoCloner

Multiple sequence alignment - TraesCS7B01G044100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G044100	chr7B	100.000	3875	0	0	1	3875	43875824	43879698	0.000000e+00	7156
1	TraesCS7B01G044100	chr7B	98.533	886	11	2	1	884	272697247	272696362	0.000000e+00	1563
2	TraesCS7B01G044100	chr7B	86.965	491	42	12	3398	3875	327273057	327273538	2.050000e-147	532
3	TraesCS7B01G044100	chr7B	97.115	208	6	0	3442	3649	43895696	43895903	6.160000e-93	351
4	TraesCS7B01G044100	chr7B	82.102	352	50	11	481	827	85845755	85845412	4.900000e-74	289
5	TraesCS7B01G044100	chr7B	86.463	229	27	4	2983	3209	327272389	327272615	8.310000e-62	248
6	TraesCS7B01G044100	chr7B	86.792	212	8	7	2806	3006	327272173	327272375	6.520000e-53	219
7	TraesCS7B01G044100	chr7B	84.118	170	18	5	3177	3340	327272741	327272907	5.180000e-34	156
8	TraesCS7B01G044100	chr7A	92.702	3001	143	36	896	3875	93079398	93076453	0.000000e+00	4259
9	TraesCS7B01G044100	chr7A	87.061	626	35	13	1	589	83011773	83012389	0.000000e+00	665
10	TraesCS7B01G044100	chr7A	86.558	491	44	12	3398	3875	192667927	192668408	4.440000e-144	521
11	TraesCS7B01G044100	chr7A	87.042	409	29	11	2806	3209	192667096	192667485	1.280000e-119	440
12	TraesCS7B01G044100	chr7A	92.337	261	16	4	625	884	83012388	83012645	6.120000e-98	368
13	TraesCS7B01G044100	chr7A	81.089	349	60	5	481	827	701545221	701545565	1.370000e-69	274
14	TraesCS7B01G044100	chr7A	88.757	169	13	4	3177	3340	192667610	192667777	6.560000e-48	202
15	TraesCS7B01G044100	chr7D	95.608	2277	80	14	1612	3875	91388993	91391262	0.000000e+00	3633
16	TraesCS7B01G044100	chr7D	93.056	648	27	10	896	1539	91388366	91388999	0.000000e+00	931
17	TraesCS7B01G044100	chr7D	86.151	491	46	12	3398	3875	185136522	185137003	9.600000e-141	510
18	TraesCS7B01G044100	chr7D	86.024	415	33	14	2806	3209	185135679	185136079	4.630000e-114	422
19	TraesCS7B01G044100	chr7D	81.089	349	60	4	481	827	296493496	296493840	1.370000e-69	274
20	TraesCS7B01G044100	chr7D	90.533	169	11	2	3177	3340	185136204	185136372	6.520000e-53	219
21	TraesCS7B01G044100	chr4D	85.327	1772	201	34	1424	3183	189585332	189583608	0.000000e+00	1777
22	TraesCS7B01G044100	chr2B	97.968	886	5	3	1	884	753910168	753909294	0.000000e+00	1524
23	TraesCS7B01G044100	chr5B	87.340	624	35	11	1	589	149454339	149453725	0.000000e+00	675
24	TraesCS7B01G044100	chr3B	87.179	624	34	12	1	589	813892064	813892676	0.000000e+00	667
25	TraesCS7B01G044100	chr3B	91.954	261	17	4	625	884	813892675	813892932	2.850000e-96	363
26	TraesCS7B01G044100	chr3B	81.089	349	60	4	481	827	780623912	780623568	1.370000e-69	274
27	TraesCS7B01G044100	chrUn	87.040	625	36	12	1	589	33305379	33304764	0.000000e+00	664
28	TraesCS7B01G044100	chrUn	92.337	261	16	4	625	884	33304765	33304508	6.120000e-98	368
29	TraesCS7B01G044100	chrUn	93.671	237	15	0	1	237	407257577	407257341	4.760000e-94	355
30	TraesCS7B01G044100	chr6A	84.776	624	51	20	1	589	120984677	120984063	1.550000e-163	586
31	TraesCS7B01G044100	chr6A	90.734	259	20	4	625	882	120984064	120983809	3.710000e-90	342
32	TraesCS7B01G044100	chr3A	92.337	261	16	4	625	884	710679597	710679340	6.120000e-98	368
33	TraesCS7B01G044100	chr3A	81.534	352	52	12	481	827	501728138	501727795	1.060000e-70	278
34	TraesCS7B01G044100	chr6B	82.670	352	48	11	481	827	503880184	503879841	2.260000e-77	300
35	TraesCS7B01G044100	chr4B	84.365	307	44	4	914	1219	339395670	339395973	8.140000e-77	298
36	TraesCS7B01G044100	chr5A	81.089	349	60	4	481	827	139251070	139250726	1.370000e-69	274
37	TraesCS7B01G044100	chr3D	81.089	349	60	4	481	827	390116122	390116466	1.370000e-69	274
38	TraesCS7B01G044100	chr5D	80.660	212	33	5	41	250	57075080	57074875	1.440000e-34	158
39	TraesCS7B01G044100	chr4A	86.364	132	12	3	325	453	583862064	583862192	5.220000e-29	139

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G044100	chr7B	43875824	43879698	3874	False	7156.000000	7156	100.000000	1	3875	1	chr7B.!!$F1	3874
1	TraesCS7B01G044100	chr7B	272696362	272697247	885	True	1563.000000	1563	98.533000	1	884	1	chr7B.!!$R2	883
2	TraesCS7B01G044100	chr7B	327272173	327273538	1365	False	288.750000	532	86.084500	2806	3875	4	chr7B.!!$F3	1069
3	TraesCS7B01G044100	chr7A	93076453	93079398	2945	True	4259.000000	4259	92.702000	896	3875	1	chr7A.!!$R1	2979
4	TraesCS7B01G044100	chr7A	83011773	83012645	872	False	516.500000	665	89.699000	1	884	2	chr7A.!!$F2	883
5	TraesCS7B01G044100	chr7A	192667096	192668408	1312	False	387.666667	521	87.452333	2806	3875	3	chr7A.!!$F3	1069
6	TraesCS7B01G044100	chr7D	91388366	91391262	2896	False	2282.000000	3633	94.332000	896	3875	2	chr7D.!!$F2	2979
7	TraesCS7B01G044100	chr7D	185135679	185137003	1324	False	383.666667	510	87.569333	2806	3875	3	chr7D.!!$F3	1069
8	TraesCS7B01G044100	chr4D	189583608	189585332	1724	True	1777.000000	1777	85.327000	1424	3183	1	chr4D.!!$R1	1759
9	TraesCS7B01G044100	chr2B	753909294	753910168	874	True	1524.000000	1524	97.968000	1	884	1	chr2B.!!$R1	883
10	TraesCS7B01G044100	chr5B	149453725	149454339	614	True	675.000000	675	87.340000	1	589	1	chr5B.!!$R1	588
11	TraesCS7B01G044100	chr3B	813892064	813892932	868	False	515.000000	667	89.566500	1	884	2	chr3B.!!$F1	883
12	TraesCS7B01G044100	chrUn	33304508	33305379	871	True	516.000000	664	89.688500	1	884	2	chrUn.!!$R2	883
13	TraesCS7B01G044100	chr6A	120983809	120984677	868	True	464.000000	586	87.755000	1	882	2	chr6A.!!$R1	881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
230	231	1.383525	GGTAGGATGGGGAACGGGA	60.384	63.158	0.00	0.0	0.0	5.14	F
1339	1380	0.460311	CCTAAGATTCGGCGAGTGGT	59.540	55.000	10.41	0.0	0.0	4.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1542	1586	0.035630	GCACAGGTTCAGAGCCATCT	60.036	55.0	6.02	0.0	35.63	2.90	R
2984	3068	1.734655	TCCAGCCTCCAGTTCTCTTT	58.265	50.0	0.00	0.0	0.00	2.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
109	110	3.944015	GACCAGATTCAACATGAAGAGGG	59.056	47.826	0.00	8.30	40.05	4.30
230	231	1.383525	GGTAGGATGGGGAACGGGA	60.384	63.158	0.00	0.00	0.00	5.14
671	710	5.308825	ACAATTTCTCCTTTCATCGTCTGT	58.691	37.500	0.00	0.00	0.00	3.41
888	928	9.941325	AGAATAAGATTCGAAATAGATGATGCT	57.059	29.630	0.00	0.00	0.00	3.79
894	934	9.853555	AGATTCGAAATAGATGATGCTTACTAG	57.146	33.333	0.00	0.00	0.00	2.57
895	935	9.632807	GATTCGAAATAGATGATGCTTACTAGT	57.367	33.333	0.00	0.00	0.00	2.57
897	937	9.894783	TTCGAAATAGATGATGCTTACTAGTAC	57.105	33.333	0.91	0.00	0.00	2.73
898	938	9.286170	TCGAAATAGATGATGCTTACTAGTACT	57.714	33.333	0.91	0.00	0.00	2.73
899	939	9.549509	CGAAATAGATGATGCTTACTAGTACTC	57.450	37.037	0.91	0.00	0.00	2.59
905	945	8.629158	AGATGATGCTTACTAGTACTCAGAAAG	58.371	37.037	0.91	0.00	0.00	2.62
1315	1356	4.367023	AAACGACGGGCGCTGCTA	62.367	61.111	7.64	0.00	46.04	3.49
1318	1359	4.796231	CGACGGGCGCTGCTAAGT	62.796	66.667	7.64	0.00	0.00	2.24
1339	1380	0.460311	CCTAAGATTCGGCGAGTGGT	59.540	55.000	10.41	0.00	0.00	4.16
1360	1401	2.683968	TCATGTTAGCTCGTGTGGAAC	58.316	47.619	0.00	0.00	37.35	3.62
1403	1444	7.420800	GGAATCTAGCAAAATGGTTACATCTG	58.579	38.462	0.00	0.00	35.94	2.90
1404	1445	5.818136	TCTAGCAAAATGGTTACATCTGC	57.182	39.130	0.00	0.00	35.94	4.26
1422	1463	4.199310	TCTGCAGTATAATGCTTGGGAAC	58.801	43.478	24.07	0.00	46.63	3.62
1470	1514	5.841267	TGCATAATGAGGATAAAGGGCTA	57.159	39.130	0.00	0.00	0.00	3.93
1471	1515	5.809001	TGCATAATGAGGATAAAGGGCTAG	58.191	41.667	0.00	0.00	0.00	3.42
1472	1516	5.310594	TGCATAATGAGGATAAAGGGCTAGT	59.689	40.000	0.00	0.00	0.00	2.57
1484	1528	7.228906	GGATAAAGGGCTAGTACTTTTGATTCC	59.771	40.741	15.64	13.23	37.94	3.01
1501	1545	9.974980	TTTTGATTCCCAAATGTAGTTACTTTC	57.025	29.630	0.00	0.00	43.59	2.62
1513	1557	8.877864	ATGTAGTTACTTTCCATGAATTCCAA	57.122	30.769	2.27	0.00	0.00	3.53
1542	1586	2.478872	AGCTGGTGGCCTCTATCTTA	57.521	50.000	3.32	0.00	43.05	2.10
1582	1629	5.576774	GTGCAAATTTACCAAATCTACTGGC	59.423	40.000	0.00	0.00	37.48	4.85
1633	1681	5.170021	TCATCATGATTTTTCCTTTTGCGG	58.830	37.500	5.16	0.00	0.00	5.69
1739	1787	6.850752	TGATGAGTTACTGGATGTGAGTTA	57.149	37.500	0.00	0.00	0.00	2.24
1779	1827	6.867816	TCTTACCGTCTTGCGTTTATCTTTAA	59.132	34.615	0.00	0.00	39.32	1.52
1784	1832	7.118101	ACCGTCTTGCGTTTATCTTTAATGTAA	59.882	33.333	0.00	0.00	39.32	2.41
1793	1841	9.400638	CGTTTATCTTTAATGTAAAGCACCAAA	57.599	29.630	3.36	0.03	43.67	3.28
1803	1853	8.956533	AATGTAAAGCACCAAAAACTTGTATT	57.043	26.923	0.00	0.00	0.00	1.89
1812	1862	3.619233	AAAACTTGTATTTGTCGCGCT	57.381	38.095	5.56	0.00	0.00	5.92
1825	1875	3.985008	TGTCGCGCTACCATTATAATGT	58.015	40.909	21.20	13.05	34.60	2.71
1946	1996	8.729756	TGTATAAGTGCCATATCATGCATTAAC	58.270	33.333	0.00	0.00	40.07	2.01
1951	2001	5.009631	TGCCATATCATGCATTAACTACCC	58.990	41.667	0.00	0.00	31.31	3.69
1959	2009	7.962995	TCATGCATTAACTACCCCATTTTTA	57.037	32.000	0.00	0.00	0.00	1.52
2082	2132	1.160137	GTGGTGACAAGGTCATCTGC	58.840	55.000	10.62	1.22	44.63	4.26
2136	2186	7.027760	GCAAGTAAGCCATAAGTCCTTTTTAC	58.972	38.462	0.00	0.00	0.00	2.01
2139	2189	5.622770	AAGCCATAAGTCCTTTTTACGTG	57.377	39.130	0.00	0.00	0.00	4.49
2199	2253	2.070262	TCTGCGTCTCACACTTGATG	57.930	50.000	0.00	0.00	0.00	3.07
2262	2317	1.470285	GCACTCGCACCGGTCTATTTA	60.470	52.381	2.59	0.00	38.36	1.40
2304	2359	4.848562	TGATGCCGAAGTTCGTATATCT	57.151	40.909	22.87	2.58	38.40	1.98
2441	2497	9.988350	CCATGTGTTATATTGTTCAAGTAAGTC	57.012	33.333	0.00	0.00	0.00	3.01
2444	2500	8.995220	TGTGTTATATTGTTCAAGTAAGTCCAC	58.005	33.333	0.00	0.00	0.00	4.02
2572	2634	7.799784	TCTAATTTAGTGTTTTTGCGGTACTC	58.200	34.615	3.45	0.00	0.00	2.59
2647	2709	8.477419	ACCTTGGAAGTAAAGATGATTTTTCA	57.523	30.769	0.00	0.00	0.00	2.69
2690	2752	7.640313	TGTACTGAAGAGGAAAGGTAGAGATA	58.360	38.462	0.00	0.00	0.00	1.98
2691	2753	7.776030	TGTACTGAAGAGGAAAGGTAGAGATAG	59.224	40.741	0.00	0.00	0.00	2.08
2692	2754	5.596772	ACTGAAGAGGAAAGGTAGAGATAGC	59.403	44.000	0.00	0.00	0.00	2.97
2706	2771	7.067737	AGGTAGAGATAGCACTGTTAACTTCTC	59.932	40.741	7.22	7.10	0.00	2.87
2725	2790	3.776969	TCTCCATACAGCATTCCTTCACT	59.223	43.478	0.00	0.00	0.00	3.41
2858	2931	5.059833	GGTTAGATCTTCCACTGCTTATGG	58.940	45.833	0.00	0.00	38.71	2.74
2881	2954	5.236047	GGTTCGGATTCAGATTGAAGAGATG	59.764	44.000	0.00	0.00	40.05	2.90
2946	3029	7.095144	TGTCTCTTTTGTACTCTAGTTCTCGAG	60.095	40.741	5.93	5.93	0.00	4.04
2979	3063	6.352682	TGATTTATGTGTGCCGTATTGTAC	57.647	37.500	0.00	0.00	0.00	2.90
2981	3065	4.475051	TTATGTGTGCCGTATTGTACCT	57.525	40.909	0.00	0.00	0.00	3.08
2984	3068	4.268797	TGTGTGCCGTATTGTACCTAAA	57.731	40.909	0.00	0.00	0.00	1.85
3009	3130	2.703007	AGAACTGGAGGCTGGATGTATC	59.297	50.000	0.00	0.00	0.00	2.24
3488	3910	0.889306	GTCTGTAGAAGCCGACACCT	59.111	55.000	0.00	0.00	0.00	4.00
3704	4129	5.057149	TGGTCTGAAGCTAAGAACTGAAAC	58.943	41.667	13.84	0.00	32.30	2.78
3729	4157	0.827089	TTGTGTGCCATGGGGTTGAG	60.827	55.000	15.13	0.00	36.17	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
230	231	0.620556	ACCGCCCATCACAATTCTCT	59.379	50.000	0.00	0.00	0.00	3.10
884	924	7.719871	TTCCTTTCTGAGTACTAGTAAGCAT	57.280	36.000	3.61	0.00	0.00	3.79
885	925	7.534723	TTTCCTTTCTGAGTACTAGTAAGCA	57.465	36.000	3.61	5.08	0.00	3.91
886	926	8.710551	GTTTTTCCTTTCTGAGTACTAGTAAGC	58.289	37.037	3.61	0.25	0.00	3.09
887	927	9.760077	TGTTTTTCCTTTCTGAGTACTAGTAAG	57.240	33.333	3.61	0.00	0.00	2.34
888	928	9.538508	GTGTTTTTCCTTTCTGAGTACTAGTAA	57.461	33.333	3.61	0.00	0.00	2.24
889	929	8.698210	TGTGTTTTTCCTTTCTGAGTACTAGTA	58.302	33.333	0.00	0.00	0.00	1.82
890	930	7.562135	TGTGTTTTTCCTTTCTGAGTACTAGT	58.438	34.615	0.00	0.00	0.00	2.57
891	931	8.336080	GTTGTGTTTTTCCTTTCTGAGTACTAG	58.664	37.037	0.00	0.00	0.00	2.57
892	932	7.825270	TGTTGTGTTTTTCCTTTCTGAGTACTA	59.175	33.333	0.00	0.00	0.00	1.82
893	933	6.657541	TGTTGTGTTTTTCCTTTCTGAGTACT	59.342	34.615	0.00	0.00	0.00	2.73
894	934	6.745907	GTGTTGTGTTTTTCCTTTCTGAGTAC	59.254	38.462	0.00	0.00	0.00	2.73
895	935	6.127842	GGTGTTGTGTTTTTCCTTTCTGAGTA	60.128	38.462	0.00	0.00	0.00	2.59
896	936	5.336451	GGTGTTGTGTTTTTCCTTTCTGAGT	60.336	40.000	0.00	0.00	0.00	3.41
897	937	5.102313	GGTGTTGTGTTTTTCCTTTCTGAG	58.898	41.667	0.00	0.00	0.00	3.35
898	938	4.380023	CGGTGTTGTGTTTTTCCTTTCTGA	60.380	41.667	0.00	0.00	0.00	3.27
899	939	3.857093	CGGTGTTGTGTTTTTCCTTTCTG	59.143	43.478	0.00	0.00	0.00	3.02
905	945	1.997669	TTGCGGTGTTGTGTTTTTCC	58.002	45.000	0.00	0.00	0.00	3.13
1107	1147	3.117322	TCAGATTGGGGAGAGGTAGAGAG	60.117	52.174	0.00	0.00	0.00	3.20
1108	1148	2.859404	TCAGATTGGGGAGAGGTAGAGA	59.141	50.000	0.00	0.00	0.00	3.10
1110	1150	2.859404	TCTCAGATTGGGGAGAGGTAGA	59.141	50.000	0.00	0.00	35.34	2.59
1236	1277	1.380380	CCAAGATCCAAGGGGGCAC	60.380	63.158	0.00	0.00	36.21	5.01
1237	1278	2.625460	CCCAAGATCCAAGGGGGCA	61.625	63.158	6.80	0.00	38.98	5.36
1238	1279	2.280079	CCCAAGATCCAAGGGGGC	59.720	66.667	6.80	0.00	38.98	5.80
1339	1380	3.064207	GTTCCACACGAGCTAACATGAA	58.936	45.455	0.00	0.00	0.00	2.57
1360	1401	4.463879	CGGAGCAGGGCTGTCCAG	62.464	72.222	0.00	0.00	39.88	3.86
1403	1444	3.287222	TGGTTCCCAAGCATTATACTGC	58.713	45.455	6.96	6.96	42.62	4.40
1404	1445	4.261741	GCATGGTTCCCAAGCATTATACTG	60.262	45.833	5.66	0.00	46.65	2.74
1422	1463	6.449698	AGAAACAGAAAACATTACTGCATGG	58.550	36.000	0.00	0.00	35.38	3.66
1470	1514	8.706322	AACTACATTTGGGAATCAAAAGTACT	57.294	30.769	0.00	0.00	46.93	2.73
1471	1515	9.836076	GTAACTACATTTGGGAATCAAAAGTAC	57.164	33.333	0.00	0.00	46.93	2.73
1472	1516	9.802039	AGTAACTACATTTGGGAATCAAAAGTA	57.198	29.630	6.45	6.45	46.93	2.24
1484	1528	9.573133	GAATTCATGGAAAGTAACTACATTTGG	57.427	33.333	0.00	0.00	0.00	3.28
1513	1557	0.962356	GCCACCAGCTTACAGCATGT	60.962	55.000	0.00	0.00	45.56	3.21
1542	1586	0.035630	GCACAGGTTCAGAGCCATCT	60.036	55.000	6.02	0.00	35.63	2.90
1582	1629	5.000012	AGAGTAGTGTTATTCTTGCTCCG	58.000	43.478	0.00	0.00	0.00	4.63
1633	1681	3.386768	ACATGGTGTCTGTGTCAGTAC	57.613	47.619	0.00	0.00	32.61	2.73
1739	1787	5.861727	ACGGTAAGAGATGGTGTAAAGTTT	58.138	37.500	0.00	0.00	0.00	2.66
1779	1827	8.825745	CAAATACAAGTTTTTGGTGCTTTACAT	58.174	29.630	7.85	0.00	38.66	2.29
1784	1832	5.518487	CGACAAATACAAGTTTTTGGTGCTT	59.482	36.000	16.58	0.49	38.66	3.91
1793	1841	3.120442	GGTAGCGCGACAAATACAAGTTT	60.120	43.478	22.25	0.00	0.00	2.66
1803	1853	4.210328	CACATTATAATGGTAGCGCGACAA	59.790	41.667	25.45	12.05	40.70	3.18
1812	1862	7.613801	ACAAAGCAGTTCCACATTATAATGGTA	59.386	33.333	25.45	10.51	40.70	3.25
1825	1875	1.073284	GGGTCCTACAAAGCAGTTCCA	59.927	52.381	0.00	0.00	0.00	3.53
1946	1996	7.502226	TCTGTTGCATAGATAAAAATGGGGTAG	59.498	37.037	0.00	0.00	0.00	3.18
1951	2001	8.442632	TCTCTCTGTTGCATAGATAAAAATGG	57.557	34.615	2.09	0.00	0.00	3.16
1959	2009	3.317711	CGACCTCTCTCTGTTGCATAGAT	59.682	47.826	2.09	0.00	0.00	1.98
2082	2132	7.193595	GGTAAAATTCACGATGGTAGAAATGG	58.806	38.462	0.00	0.00	0.00	3.16
2199	2253	8.908786	TGATCCTACCAAAGATTTACATCATC	57.091	34.615	0.00	0.00	0.00	2.92
2262	2317	5.305585	TCAAGCTTGACGAATTTAGTTCCT	58.694	37.500	25.16	0.00	30.58	3.36
2304	2359	8.726870	AGCACAAGTAACTTAAAACTAACAGA	57.273	30.769	0.00	0.00	0.00	3.41
2325	2381	5.559035	GCATCCATCGATGTAGTAAAAGCAC	60.559	44.000	23.27	0.00	46.56	4.40
2351	2407	8.397906	GCATTCTGCAGTAGTTATCAACAAATA	58.602	33.333	14.67	0.00	44.26	1.40
2441	2497	7.605449	AGGTAGAATTCATGAACAATTTGTGG	58.395	34.615	11.07	0.00	0.00	4.17
2572	2634	7.339466	ACAGCAATACCCTTCCTAAAATACAAG	59.661	37.037	0.00	0.00	0.00	3.16
2647	2709	2.407562	ACATTTTCCAAAGCCCTGGTT	58.592	42.857	1.80	0.00	37.74	3.67
2690	2752	5.482908	CTGTATGGAGAAGTTAACAGTGCT	58.517	41.667	8.61	0.00	31.82	4.40
2691	2753	4.093556	GCTGTATGGAGAAGTTAACAGTGC	59.906	45.833	8.61	0.00	37.31	4.40
2692	2754	5.237815	TGCTGTATGGAGAAGTTAACAGTG	58.762	41.667	8.61	0.00	37.31	3.66
2706	2771	6.543465	TCAAATAGTGAAGGAATGCTGTATGG	59.457	38.462	0.00	0.00	31.51	2.74
2858	2931	5.236047	CCATCTCTTCAATCTGAATCCGAAC	59.764	44.000	0.00	0.00	35.59	3.95
2881	2954	6.825721	ACAAAAGACAGGATCATATCACTTCC	59.174	38.462	0.00	0.00	0.00	3.46
2946	3029	6.907212	CGGCACACATAAATCATAAAGAACTC	59.093	38.462	0.00	0.00	0.00	3.01
2979	3063	4.006319	CAGCCTCCAGTTCTCTTTTTAGG	58.994	47.826	0.00	0.00	0.00	2.69
2981	3065	3.650942	TCCAGCCTCCAGTTCTCTTTTTA	59.349	43.478	0.00	0.00	0.00	1.52
2984	3068	1.734655	TCCAGCCTCCAGTTCTCTTT	58.265	50.000	0.00	0.00	0.00	2.52
3488	3910	2.100252	GGCCTACGCTCAGTATACACAA	59.900	50.000	5.50	0.00	34.34	3.33
3729	4157	1.670967	GCCAAGGTTTGCATCTGCTTC	60.671	52.381	3.53	0.00	42.66	3.86
3828	4256	1.135489	CGCGAAGTACTGAAGCTGGTA	60.135	52.381	0.00	0.00	0.00	3.25

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.