Multiple sequence alignment - TraesCS7B01G043200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G043200 chr7B 100.000 4595 0 0 1 4595 43189419 43194013 0.000000e+00 8486.0
1 TraesCS7B01G043200 chr7B 77.582 910 188 11 1892 2796 42079220 42078322 1.880000e-148 536.0
2 TraesCS7B01G043200 chr7B 87.879 330 38 2 1009 1337 42080017 42079689 2.010000e-103 387.0
3 TraesCS7B01G043200 chr7D 94.350 2761 108 20 1577 4307 91707877 91705135 0.000000e+00 4191.0
4 TraesCS7B01G043200 chr7D 93.149 832 27 9 675 1492 91708695 91707880 0.000000e+00 1194.0
5 TraesCS7B01G043200 chr7D 78.022 910 186 10 1891 2796 91006406 91005507 1.120000e-155 560.0
6 TraesCS7B01G043200 chr7D 87.273 330 40 2 1009 1337 91007184 91006856 4.340000e-100 375.0
7 TraesCS7B01G043200 chr7A 92.775 2090 91 10 1591 3643 93281710 93279644 0.000000e+00 2968.0
8 TraesCS7B01G043200 chr7A 93.208 530 22 7 973 1492 93282252 93281727 0.000000e+00 767.0
9 TraesCS7B01G043200 chr7A 89.847 522 21 9 3707 4224 93279634 93279141 3.880000e-180 641.0
10 TraesCS7B01G043200 chr7A 78.548 909 181 9 1892 2796 93036480 93035582 1.840000e-163 586.0
11 TraesCS7B01G043200 chr7A 99.265 272 2 0 4324 4595 730164542 730164813 4.130000e-135 492.0
12 TraesCS7B01G043200 chr7A 98.897 272 3 0 4324 4595 730172560 730172831 1.920000e-133 486.0
13 TraesCS7B01G043200 chr7A 88.235 340 18 16 621 945 93282581 93282249 2.010000e-103 387.0
14 TraesCS7B01G043200 chr7A 86.061 330 44 2 1009 1337 93037276 93036948 2.030000e-93 353.0
15 TraesCS7B01G043200 chr7A 91.935 62 2 3 1498 1557 725119998 725120058 2.950000e-12 84.2
16 TraesCS7B01G043200 chr6B 92.405 632 33 6 3 621 703054361 703054990 0.000000e+00 887.0
17 TraesCS7B01G043200 chr6B 93.493 584 23 8 3 574 157675144 157674564 0.000000e+00 854.0
18 TraesCS7B01G043200 chr6B 91.167 634 39 8 3 621 703005365 703005996 0.000000e+00 845.0
19 TraesCS7B01G043200 chr6B 90.016 631 29 10 3 621 703012225 703012833 0.000000e+00 785.0
20 TraesCS7B01G043200 chr6B 89.414 614 29 14 3 602 703103911 703104502 0.000000e+00 741.0
21 TraesCS7B01G043200 chr6B 86.635 636 26 17 3 622 134666200 134666792 0.000000e+00 649.0
22 TraesCS7B01G043200 chr6B 90.486 494 33 5 139 621 703061393 703061883 1.390000e-179 640.0
23 TraesCS7B01G043200 chr6B 93.220 59 4 0 1498 1556 177274988 177274930 2.280000e-13 87.9
24 TraesCS7B01G043200 chr3B 97.669 472 9 2 1 470 826270152 826269681 0.000000e+00 809.0
25 TraesCS7B01G043200 chr3B 98.897 272 3 0 4324 4595 673714690 673714419 1.920000e-133 486.0
26 TraesCS7B01G043200 chr1B 90.129 618 32 6 1 606 665287711 665288311 0.000000e+00 776.0
27 TraesCS7B01G043200 chr1B 90.000 60 6 0 1498 1557 31737529 31737588 1.370000e-10 78.7
28 TraesCS7B01G043200 chr2B 89.274 634 33 8 3 623 28008546 28007935 0.000000e+00 761.0
29 TraesCS7B01G043200 chr4A 93.737 479 23 6 3 475 742792523 742793000 0.000000e+00 712.0
30 TraesCS7B01G043200 chr6A 99.265 272 2 0 4324 4595 67876017 67875746 4.130000e-135 492.0
31 TraesCS7B01G043200 chr6A 99.265 272 2 0 4324 4595 67884469 67884198 4.130000e-135 492.0
32 TraesCS7B01G043200 chr6A 98.897 272 2 1 4324 4595 182923438 182923168 6.910000e-133 484.0
33 TraesCS7B01G043200 chr5B 98.897 272 3 0 4324 4595 582283489 582283760 1.920000e-133 486.0
34 TraesCS7B01G043200 chr4B 98.897 272 3 0 4324 4595 41874545 41874816 1.920000e-133 486.0
35 TraesCS7B01G043200 chr4B 98.529 272 4 0 4324 4595 495170429 495170158 8.940000e-132 481.0
36 TraesCS7B01G043200 chr4B 83.209 536 39 24 98 621 651963185 651963681 1.170000e-120 444.0
37 TraesCS7B01G043200 chr1D 86.861 137 15 3 485 621 259584680 259584547 2.860000e-32 150.0
38 TraesCS7B01G043200 chr1D 90.164 61 4 2 1498 1557 293129553 293129494 1.370000e-10 78.7
39 TraesCS7B01G043200 chr3A 90.323 62 4 2 1498 1557 717987578 717987517 3.810000e-11 80.5
40 TraesCS7B01G043200 chr2D 90.323 62 4 2 1498 1557 10173364 10173425 3.810000e-11 80.5
41 TraesCS7B01G043200 chrUn 91.379 58 4 1 1498 1555 291776879 291776823 1.370000e-10 78.7
42 TraesCS7B01G043200 chr5D 88.710 62 5 2 1498 1557 486934002 486934063 1.770000e-09 75.0
43 TraesCS7B01G043200 chr5D 86.765 68 7 2 1498 1564 539769308 539769242 1.770000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G043200 chr7B 43189419 43194013 4594 False 8486.00 8486 100.00000 1 4595 1 chr7B.!!$F1 4594
1 TraesCS7B01G043200 chr7B 42078322 42080017 1695 True 461.50 536 82.73050 1009 2796 2 chr7B.!!$R1 1787
2 TraesCS7B01G043200 chr7D 91705135 91708695 3560 True 2692.50 4191 93.74950 675 4307 2 chr7D.!!$R2 3632
3 TraesCS7B01G043200 chr7D 91005507 91007184 1677 True 467.50 560 82.64750 1009 2796 2 chr7D.!!$R1 1787
4 TraesCS7B01G043200 chr7A 93279141 93282581 3440 True 1190.75 2968 91.01625 621 4224 4 chr7A.!!$R2 3603
5 TraesCS7B01G043200 chr7A 93035582 93037276 1694 True 469.50 586 82.30450 1009 2796 2 chr7A.!!$R1 1787
6 TraesCS7B01G043200 chr6B 703054361 703054990 629 False 887.00 887 92.40500 3 621 1 chr6B.!!$F4 618
7 TraesCS7B01G043200 chr6B 157674564 157675144 580 True 854.00 854 93.49300 3 574 1 chr6B.!!$R1 571
8 TraesCS7B01G043200 chr6B 703005365 703005996 631 False 845.00 845 91.16700 3 621 1 chr6B.!!$F2 618
9 TraesCS7B01G043200 chr6B 703012225 703012833 608 False 785.00 785 90.01600 3 621 1 chr6B.!!$F3 618
10 TraesCS7B01G043200 chr6B 703103911 703104502 591 False 741.00 741 89.41400 3 602 1 chr6B.!!$F6 599
11 TraesCS7B01G043200 chr6B 134666200 134666792 592 False 649.00 649 86.63500 3 622 1 chr6B.!!$F1 619
12 TraesCS7B01G043200 chr1B 665287711 665288311 600 False 776.00 776 90.12900 1 606 1 chr1B.!!$F2 605
13 TraesCS7B01G043200 chr2B 28007935 28008546 611 True 761.00 761 89.27400 3 623 1 chr2B.!!$R1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
478 489 0.037326 GTGGCTACAGCAGTGCACTA 60.037 55.000 21.20 1.97 44.36 2.74 F
762 787 0.181350 AAATCCTGAGATCCCGGCAC 59.819 55.000 0.00 0.00 0.00 5.01 F
1669 1762 0.179067 TGGACGAATATGTTCCCCGC 60.179 55.000 0.00 0.00 0.00 6.13 F
3013 3250 1.153349 CTCTTGCTTAGGGCCGGAC 60.153 63.158 5.05 0.00 40.92 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 1592 0.668706 ATCAGAGCGATGCATACGGC 60.669 55.0 16.56 12.82 45.13 5.68 R
1870 2105 0.919710 AATACAGGAGGAAGGCCACC 59.080 55.0 5.01 8.40 44.52 4.61 R
3288 3553 0.260230 TCCCAAAGTGCTTCAACCCA 59.740 50.0 0.00 0.00 0.00 4.51 R
4371 4664 0.036952 CTGCAGTTCAGTCCACCGAT 60.037 55.0 5.25 0.00 38.02 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 118 8.061268 CACAACAATTTTAAAAAGTTCATCGGG 58.939 33.333 15.26 8.77 0.00 5.14
187 196 7.394016 AGTTCATGGGTTTTTGAAAAAGTTCT 58.606 30.769 2.91 0.00 33.90 3.01
475 486 2.032528 GGTGGCTACAGCAGTGCA 59.967 61.111 19.20 0.00 44.32 4.57
478 489 0.037326 GTGGCTACAGCAGTGCACTA 60.037 55.000 21.20 1.97 44.36 2.74
507 529 2.189521 GAATCCCCGTCGGCACAT 59.810 61.111 5.50 0.00 0.00 3.21
523 545 4.173256 GGCACATAATTTTTCCTGGTTCG 58.827 43.478 0.00 0.00 0.00 3.95
653 675 1.807165 CGTCCGCTCACACATCTGG 60.807 63.158 0.00 0.00 0.00 3.86
762 787 0.181350 AAATCCTGAGATCCCGGCAC 59.819 55.000 0.00 0.00 0.00 5.01
842 867 2.490902 GCTCCCCTTTTCTTTCCTTCCA 60.491 50.000 0.00 0.00 0.00 3.53
956 1000 4.415150 GGCCAGCCAGCACTAGCA 62.415 66.667 3.12 0.00 45.49 3.49
957 1001 2.360350 GCCAGCCAGCACTAGCAA 60.360 61.111 0.00 0.00 45.49 3.91
958 1002 1.751927 GCCAGCCAGCACTAGCAAT 60.752 57.895 0.00 0.00 45.49 3.56
959 1003 0.464373 GCCAGCCAGCACTAGCAATA 60.464 55.000 0.00 0.00 45.49 1.90
979 1023 3.842923 CGCGCAGGACCCAGAGAT 61.843 66.667 8.75 0.00 0.00 2.75
987 1031 1.406860 GGACCCAGAGATCCAGCTCC 61.407 65.000 0.00 0.00 35.49 4.70
994 1038 4.959596 GATCCAGCTCCGCTCGGC 62.960 72.222 2.96 0.00 36.40 5.54
1423 1498 4.038162 CCGAGGTCGATTTCTTAAGATCCT 59.962 45.833 5.89 7.59 43.02 3.24
1492 1585 6.032956 TGCTCTCGTTCAGTAAATTTAGGA 57.967 37.500 0.00 0.00 0.00 2.94
1494 1587 5.520649 GCTCTCGTTCAGTAAATTTAGGAGG 59.479 44.000 0.00 0.00 0.00 4.30
1495 1588 6.600882 TCTCGTTCAGTAAATTTAGGAGGT 57.399 37.500 0.00 0.00 0.00 3.85
1496 1589 7.001099 TCTCGTTCAGTAAATTTAGGAGGTT 57.999 36.000 0.00 0.00 0.00 3.50
1497 1590 7.447594 TCTCGTTCAGTAAATTTAGGAGGTTT 58.552 34.615 0.00 0.00 0.00 3.27
1498 1591 7.386848 TCTCGTTCAGTAAATTTAGGAGGTTTG 59.613 37.037 0.00 0.00 0.00 2.93
1499 1592 6.428771 TCGTTCAGTAAATTTAGGAGGTTTGG 59.571 38.462 0.00 0.00 0.00 3.28
1500 1593 6.387465 GTTCAGTAAATTTAGGAGGTTTGGC 58.613 40.000 0.00 0.00 0.00 4.52
1501 1594 5.014202 TCAGTAAATTTAGGAGGTTTGGCC 58.986 41.667 0.00 0.00 37.58 5.36
1502 1595 4.014406 AGTAAATTTAGGAGGTTTGGCCG 58.986 43.478 0.00 0.00 43.70 6.13
1503 1596 2.597578 AATTTAGGAGGTTTGGCCGT 57.402 45.000 0.00 0.00 43.70 5.68
1504 1597 3.724732 AATTTAGGAGGTTTGGCCGTA 57.275 42.857 0.00 0.00 43.70 4.02
1505 1598 3.945640 ATTTAGGAGGTTTGGCCGTAT 57.054 42.857 0.00 0.00 43.70 3.06
1506 1599 2.702592 TTAGGAGGTTTGGCCGTATG 57.297 50.000 0.00 0.00 43.70 2.39
1507 1600 0.179468 TAGGAGGTTTGGCCGTATGC 59.821 55.000 0.00 0.00 43.70 3.14
1508 1601 1.377987 GGAGGTTTGGCCGTATGCA 60.378 57.895 0.00 0.00 43.89 3.96
1509 1602 0.751643 GGAGGTTTGGCCGTATGCAT 60.752 55.000 3.79 3.79 43.89 3.96
1510 1603 0.663153 GAGGTTTGGCCGTATGCATC 59.337 55.000 0.19 0.00 43.89 3.91
1511 1604 1.095228 AGGTTTGGCCGTATGCATCG 61.095 55.000 0.19 7.03 43.89 3.84
1512 1605 1.298339 GTTTGGCCGTATGCATCGC 60.298 57.895 0.19 3.34 43.89 4.58
1513 1606 1.451207 TTTGGCCGTATGCATCGCT 60.451 52.632 0.19 0.00 43.89 4.93
1514 1607 1.436195 TTTGGCCGTATGCATCGCTC 61.436 55.000 0.19 2.96 43.89 5.03
1515 1608 2.029666 GGCCGTATGCATCGCTCT 59.970 61.111 0.19 0.00 43.89 4.09
1516 1609 2.313172 GGCCGTATGCATCGCTCTG 61.313 63.158 0.19 0.00 43.89 3.35
1517 1610 1.300156 GCCGTATGCATCGCTCTGA 60.300 57.895 0.19 0.00 40.77 3.27
1518 1611 0.668706 GCCGTATGCATCGCTCTGAT 60.669 55.000 0.19 0.00 40.77 2.90
1536 1629 3.673599 GCAGAGGCAGGGTCAAAC 58.326 61.111 0.00 0.00 40.72 2.93
1537 1630 1.973812 GCAGAGGCAGGGTCAAACC 60.974 63.158 0.00 0.00 40.72 3.27
1549 1642 3.916359 GGTCAAACCCCCTTTTCAAAA 57.084 42.857 0.00 0.00 30.04 2.44
1550 1643 4.223556 GGTCAAACCCCCTTTTCAAAAA 57.776 40.909 0.00 0.00 30.04 1.94
1669 1762 0.179067 TGGACGAATATGTTCCCCGC 60.179 55.000 0.00 0.00 0.00 6.13
1706 1799 7.506938 CCCTTTCTATGATCCCAACAACATAAT 59.493 37.037 0.00 0.00 0.00 1.28
1707 1800 9.573166 CCTTTCTATGATCCCAACAACATAATA 57.427 33.333 0.00 0.00 0.00 0.98
1715 1808 9.161629 TGATCCCAACAACATAATATAATAGCG 57.838 33.333 0.00 0.00 0.00 4.26
2114 2351 1.537814 TTTTGCTCGCTCTCGGGGTA 61.538 55.000 0.00 0.00 36.50 3.69
2461 2698 1.631388 TGCCTCCGGATCAAACCTTAA 59.369 47.619 3.57 0.00 0.00 1.85
2486 2723 5.835819 TGATCTAGACGATGAGGATTCCTTT 59.164 40.000 6.68 0.00 29.38 3.11
2531 2768 1.616159 GTGAAGGGGCTGTAAAGCAA 58.384 50.000 7.33 0.00 36.33 3.91
2757 2994 1.373435 CGTTTGGGAGGTGGTGCTA 59.627 57.895 0.00 0.00 0.00 3.49
2957 3194 7.004086 TGTTTCCCTAGTTGAATGATCAAAGT 58.996 34.615 0.00 0.00 46.66 2.66
3012 3249 1.612442 ACTCTTGCTTAGGGCCGGA 60.612 57.895 5.05 0.00 40.92 5.14
3013 3250 1.153349 CTCTTGCTTAGGGCCGGAC 60.153 63.158 5.05 0.00 40.92 4.79
3014 3251 1.612442 TCTTGCTTAGGGCCGGACT 60.612 57.895 7.57 5.67 40.92 3.85
3015 3252 1.450312 CTTGCTTAGGGCCGGACTG 60.450 63.158 7.57 0.00 40.92 3.51
3016 3253 3.622060 TTGCTTAGGGCCGGACTGC 62.622 63.158 7.57 7.78 40.92 4.40
3036 3274 2.111999 TTTCTCCGGTCCCAGCTGTG 62.112 60.000 13.81 0.00 0.00 3.66
3057 3295 7.601073 TGTGTACAAATTTGCAATCAACAAA 57.399 28.000 18.12 5.80 40.98 2.83
3110 3375 3.665745 ATGACCATGGTGCTTGTTTTC 57.334 42.857 25.52 4.63 0.00 2.29
3159 3424 5.846203 GCATTGATTATATGCACCCAAGTT 58.154 37.500 0.00 0.00 45.93 2.66
3171 3436 4.771577 TGCACCCAAGTTGTGATGATATTT 59.228 37.500 1.45 0.00 35.74 1.40
3258 3523 2.730382 TGCTACGGTATCCAGTTCTCA 58.270 47.619 0.00 0.00 0.00 3.27
3369 3634 0.318699 TCCTGTTCAACAGTCTCGCG 60.319 55.000 16.50 0.00 44.50 5.87
3381 3646 3.827302 ACAGTCTCGCGGGATATTTCTAT 59.173 43.478 14.04 0.00 0.00 1.98
3384 3649 4.082679 AGTCTCGCGGGATATTTCTATGAC 60.083 45.833 14.04 3.69 0.00 3.06
3405 3670 0.036732 TCGAGGTGGAAAAGCAGCAT 59.963 50.000 0.00 0.00 0.00 3.79
3456 3721 0.979187 ATGGCCCCAATTGCTTCAGG 60.979 55.000 0.00 0.00 0.00 3.86
3477 3742 3.371285 GGCTCACGTTCTTTATTCTGTCC 59.629 47.826 0.00 0.00 0.00 4.02
3537 3802 1.890894 CGTGAGGATCCGACCAGTT 59.109 57.895 5.98 0.00 31.82 3.16
3577 3842 2.194326 GATCCTTCAGCCAGCCCC 59.806 66.667 0.00 0.00 0.00 5.80
3646 3911 2.077627 AGATACGATGATCGGACTCGG 58.922 52.381 19.82 0.00 45.59 4.63
3719 3984 3.073798 TGGGCTCTCATTTTTGTGGTCTA 59.926 43.478 0.00 0.00 0.00 2.59
3735 4000 3.980022 TGGTCTAATATTGCCATCCTGGA 59.020 43.478 0.00 0.00 40.96 3.86
3738 4003 4.762251 GTCTAATATTGCCATCCTGGAACC 59.238 45.833 0.00 0.00 40.96 3.62
3783 4048 0.891373 ATCTCCAGGATGCGGTATCG 59.109 55.000 0.00 0.00 36.62 2.92
3815 4082 4.332819 GGTTAGTGTACTGATGCATGAACC 59.667 45.833 2.46 0.00 33.78 3.62
3816 4083 2.991250 AGTGTACTGATGCATGAACCC 58.009 47.619 2.46 0.00 0.00 4.11
3817 4084 2.017049 GTGTACTGATGCATGAACCCC 58.983 52.381 2.46 0.00 0.00 4.95
3868 4135 4.495422 ACTTGTAGAGTGGCGATTTGTAG 58.505 43.478 0.00 0.00 37.17 2.74
3915 4184 6.969043 TGTATTATTTGGATGGTTCTCAGGT 58.031 36.000 0.00 0.00 0.00 4.00
3936 4205 1.350684 TGTGAGAAGCCAGCCATGTAA 59.649 47.619 0.00 0.00 0.00 2.41
3956 4225 2.910688 AATGATGCCCGTACTACTGG 57.089 50.000 0.00 0.00 0.00 4.00
4019 4288 3.521947 AATGCTAGTACCCGTTGTCTC 57.478 47.619 0.00 0.00 0.00 3.36
4081 4350 9.850628 TTCAATTTTGATCAGATTTAAGCAGAG 57.149 29.630 0.00 0.00 37.00 3.35
4082 4351 8.464404 TCAATTTTGATCAGATTTAAGCAGAGG 58.536 33.333 0.00 0.00 31.01 3.69
4083 4352 7.951347 ATTTTGATCAGATTTAAGCAGAGGT 57.049 32.000 0.00 0.00 0.00 3.85
4084 4353 6.748333 TTTGATCAGATTTAAGCAGAGGTG 57.252 37.500 0.00 0.00 0.00 4.00
4085 4354 4.774124 TGATCAGATTTAAGCAGAGGTGG 58.226 43.478 0.00 0.00 0.00 4.61
4086 4355 2.991250 TCAGATTTAAGCAGAGGTGGC 58.009 47.619 0.00 0.00 0.00 5.01
4152 4441 3.494626 CGCTAAGAAAACTGCACTGAAGA 59.505 43.478 0.00 0.00 0.00 2.87
4229 4518 1.737793 CCTGCTGTCGGTTTATTCCAC 59.262 52.381 0.00 0.00 0.00 4.02
4234 4523 5.250200 TGCTGTCGGTTTATTCCACTTTAT 58.750 37.500 0.00 0.00 0.00 1.40
4260 4549 3.005791 TCTGTGGCATCATATACTCGTGG 59.994 47.826 0.00 0.00 0.00 4.94
4280 4573 5.935789 CGTGGAAATTACTCCCTCTGTAAAA 59.064 40.000 0.00 0.00 34.20 1.52
4307 4600 2.693591 CCTAGAGGCACCGAAGATTACA 59.306 50.000 0.00 0.00 0.00 2.41
4308 4601 3.322254 CCTAGAGGCACCGAAGATTACAT 59.678 47.826 0.00 0.00 0.00 2.29
4309 4602 3.185246 AGAGGCACCGAAGATTACATG 57.815 47.619 0.00 0.00 0.00 3.21
4310 4603 2.158900 AGAGGCACCGAAGATTACATGG 60.159 50.000 0.00 0.00 0.00 3.66
4311 4604 1.134098 AGGCACCGAAGATTACATGGG 60.134 52.381 0.00 0.00 0.00 4.00
4312 4605 1.308998 GCACCGAAGATTACATGGGG 58.691 55.000 0.00 0.00 0.00 4.96
4313 4606 1.967319 CACCGAAGATTACATGGGGG 58.033 55.000 0.00 0.00 0.00 5.40
4314 4607 1.211949 CACCGAAGATTACATGGGGGT 59.788 52.381 0.00 0.00 0.00 4.95
4315 4608 1.211949 ACCGAAGATTACATGGGGGTG 59.788 52.381 0.00 0.00 0.00 4.61
4316 4609 1.211949 CCGAAGATTACATGGGGGTGT 59.788 52.381 0.00 0.00 36.13 4.16
4317 4610 2.436542 CCGAAGATTACATGGGGGTGTA 59.563 50.000 0.00 0.00 33.62 2.90
4318 4611 3.072476 CCGAAGATTACATGGGGGTGTAT 59.928 47.826 0.00 0.00 34.76 2.29
4319 4612 4.065088 CGAAGATTACATGGGGGTGTATG 58.935 47.826 0.00 0.00 34.76 2.39
4320 4613 4.444306 CGAAGATTACATGGGGGTGTATGT 60.444 45.833 0.00 0.00 40.39 2.29
4321 4614 4.437682 AGATTACATGGGGGTGTATGTG 57.562 45.455 0.00 0.00 37.98 3.21
4322 4615 3.785887 AGATTACATGGGGGTGTATGTGT 59.214 43.478 0.00 0.00 37.98 3.72
4323 4616 4.972568 AGATTACATGGGGGTGTATGTGTA 59.027 41.667 0.00 0.00 37.98 2.90
4324 4617 4.764050 TTACATGGGGGTGTATGTGTAG 57.236 45.455 0.00 0.00 37.98 2.74
4325 4618 1.211949 ACATGGGGGTGTATGTGTAGC 59.788 52.381 0.00 0.00 36.26 3.58
4326 4619 1.211703 CATGGGGGTGTATGTGTAGCA 59.788 52.381 0.00 0.00 0.00 3.49
4327 4620 1.363246 TGGGGGTGTATGTGTAGCAA 58.637 50.000 0.00 0.00 0.00 3.91
4328 4621 1.280710 TGGGGGTGTATGTGTAGCAAG 59.719 52.381 0.00 0.00 0.00 4.01
4329 4622 1.408266 GGGGGTGTATGTGTAGCAAGG 60.408 57.143 0.00 0.00 0.00 3.61
4330 4623 1.557832 GGGGTGTATGTGTAGCAAGGA 59.442 52.381 0.00 0.00 0.00 3.36
4331 4624 2.420129 GGGGTGTATGTGTAGCAAGGAG 60.420 54.545 0.00 0.00 0.00 3.69
4332 4625 2.280628 GGTGTATGTGTAGCAAGGAGC 58.719 52.381 0.00 0.00 46.19 4.70
4346 4639 3.743396 GCAAGGAGCTACACTACATATGC 59.257 47.826 1.58 0.00 41.15 3.14
4347 4640 4.740634 GCAAGGAGCTACACTACATATGCA 60.741 45.833 1.58 0.00 41.15 3.96
4348 4641 5.545588 CAAGGAGCTACACTACATATGCAT 58.454 41.667 3.79 3.79 0.00 3.96
4349 4642 5.144692 AGGAGCTACACTACATATGCATG 57.855 43.478 10.16 0.00 38.21 4.06
4350 4643 4.020751 AGGAGCTACACTACATATGCATGG 60.021 45.833 10.16 3.88 36.39 3.66
4351 4644 4.248859 GAGCTACACTACATATGCATGGG 58.751 47.826 10.16 3.48 36.39 4.00
4352 4645 3.648067 AGCTACACTACATATGCATGGGT 59.352 43.478 10.16 9.81 36.39 4.51
4353 4646 4.838423 AGCTACACTACATATGCATGGGTA 59.162 41.667 10.16 10.46 36.39 3.69
4354 4647 5.485353 AGCTACACTACATATGCATGGGTAT 59.515 40.000 10.16 0.00 36.39 2.73
4355 4648 6.667848 AGCTACACTACATATGCATGGGTATA 59.332 38.462 10.16 1.22 36.39 1.47
4356 4649 7.345653 AGCTACACTACATATGCATGGGTATAT 59.654 37.037 10.16 0.78 36.39 0.86
4365 4658 7.988737 CATATGCATGGGTATATGTGTAAAGG 58.011 38.462 10.16 0.00 42.04 3.11
4366 4659 4.724399 TGCATGGGTATATGTGTAAAGGG 58.276 43.478 0.00 0.00 0.00 3.95
4367 4660 3.506067 GCATGGGTATATGTGTAAAGGGC 59.494 47.826 0.00 0.00 0.00 5.19
4368 4661 3.868619 TGGGTATATGTGTAAAGGGCC 57.131 47.619 0.00 0.00 0.00 5.80
4369 4662 3.124066 TGGGTATATGTGTAAAGGGCCA 58.876 45.455 6.18 0.00 0.00 5.36
4370 4663 3.724738 TGGGTATATGTGTAAAGGGCCAT 59.275 43.478 6.18 0.00 0.00 4.40
4371 4664 4.914581 TGGGTATATGTGTAAAGGGCCATA 59.085 41.667 6.18 0.00 0.00 2.74
4372 4665 5.553953 TGGGTATATGTGTAAAGGGCCATAT 59.446 40.000 6.18 0.62 35.35 1.78
4373 4666 6.120220 GGGTATATGTGTAAAGGGCCATATC 58.880 44.000 6.18 0.00 33.69 1.63
4374 4667 5.815740 GGTATATGTGTAAAGGGCCATATCG 59.184 44.000 6.18 0.00 33.69 2.92
4375 4668 2.631160 TGTGTAAAGGGCCATATCGG 57.369 50.000 6.18 0.00 38.11 4.18
4376 4669 1.841277 TGTGTAAAGGGCCATATCGGT 59.159 47.619 6.18 0.00 36.97 4.69
4377 4670 2.218603 GTGTAAAGGGCCATATCGGTG 58.781 52.381 6.18 0.00 36.97 4.94
4378 4671 1.142060 TGTAAAGGGCCATATCGGTGG 59.858 52.381 6.18 0.00 42.35 4.61
4379 4672 1.418637 GTAAAGGGCCATATCGGTGGA 59.581 52.381 6.18 0.00 42.02 4.02
4382 4675 4.779475 GGCCATATCGGTGGACTG 57.221 61.111 0.00 0.00 44.34 3.51
4383 4676 2.133195 GGCCATATCGGTGGACTGA 58.867 57.895 0.00 0.00 44.34 3.41
4384 4677 0.468226 GGCCATATCGGTGGACTGAA 59.532 55.000 0.00 0.00 44.34 3.02
4385 4678 1.583054 GCCATATCGGTGGACTGAAC 58.417 55.000 6.60 0.00 42.02 3.18
4386 4679 1.139058 GCCATATCGGTGGACTGAACT 59.861 52.381 6.60 0.00 42.02 3.01
4387 4680 2.826428 CCATATCGGTGGACTGAACTG 58.174 52.381 0.00 0.00 42.02 3.16
4388 4681 2.205074 CATATCGGTGGACTGAACTGC 58.795 52.381 0.00 0.00 34.49 4.40
4389 4682 1.262417 TATCGGTGGACTGAACTGCA 58.738 50.000 0.00 0.00 34.49 4.41
4409 4702 3.484407 CAGAATGCCAGAATAAGAGGGG 58.516 50.000 0.00 0.00 0.00 4.79
4410 4703 2.444766 AGAATGCCAGAATAAGAGGGGG 59.555 50.000 0.00 0.00 0.00 5.40
4411 4704 2.212752 ATGCCAGAATAAGAGGGGGA 57.787 50.000 0.00 0.00 0.00 4.81
4412 4705 2.212752 TGCCAGAATAAGAGGGGGAT 57.787 50.000 0.00 0.00 0.00 3.85
4413 4706 3.360740 TGCCAGAATAAGAGGGGGATA 57.639 47.619 0.00 0.00 0.00 2.59
4414 4707 3.251484 TGCCAGAATAAGAGGGGGATAG 58.749 50.000 0.00 0.00 0.00 2.08
4415 4708 2.026729 GCCAGAATAAGAGGGGGATAGC 60.027 54.545 0.00 0.00 0.00 2.97
4416 4709 3.525862 CCAGAATAAGAGGGGGATAGCT 58.474 50.000 0.00 0.00 0.00 3.32
4417 4710 4.689062 CCAGAATAAGAGGGGGATAGCTA 58.311 47.826 0.00 0.00 0.00 3.32
4418 4711 5.094387 CCAGAATAAGAGGGGGATAGCTAA 58.906 45.833 0.00 0.00 0.00 3.09
4419 4712 5.728741 CCAGAATAAGAGGGGGATAGCTAAT 59.271 44.000 0.00 0.00 0.00 1.73
4420 4713 6.126911 CCAGAATAAGAGGGGGATAGCTAATC 60.127 46.154 0.00 0.00 0.00 1.75
4443 4736 0.170561 TCGAAGACTACGCTTCTGGC 59.829 55.000 0.00 0.00 41.60 4.85
4444 4737 0.109272 CGAAGACTACGCTTCTGGCA 60.109 55.000 0.00 0.00 41.60 4.92
4445 4738 1.634702 GAAGACTACGCTTCTGGCAG 58.365 55.000 8.58 8.58 40.80 4.85
4446 4739 0.390472 AAGACTACGCTTCTGGCAGC 60.390 55.000 10.34 0.00 41.91 5.25
4447 4740 1.811679 GACTACGCTTCTGGCAGCC 60.812 63.158 10.34 3.66 41.91 4.85
4448 4741 2.232298 GACTACGCTTCTGGCAGCCT 62.232 60.000 14.15 0.00 41.91 4.58
4449 4742 1.520342 CTACGCTTCTGGCAGCCTC 60.520 63.158 14.15 0.00 41.91 4.70
4450 4743 2.914777 CTACGCTTCTGGCAGCCTCC 62.915 65.000 14.15 0.00 41.91 4.30
4452 4745 4.400961 GCTTCTGGCAGCCTCCGT 62.401 66.667 14.15 0.00 41.35 4.69
4453 4746 2.125350 CTTCTGGCAGCCTCCGTC 60.125 66.667 14.15 0.00 0.00 4.79
4454 4747 2.604686 TTCTGGCAGCCTCCGTCT 60.605 61.111 14.15 0.00 0.00 4.18
4455 4748 2.177594 CTTCTGGCAGCCTCCGTCTT 62.178 60.000 14.15 0.00 0.00 3.01
4456 4749 2.435586 CTGGCAGCCTCCGTCTTG 60.436 66.667 14.15 0.00 0.00 3.02
4457 4750 4.704833 TGGCAGCCTCCGTCTTGC 62.705 66.667 14.15 0.00 0.00 4.01
4458 4751 4.704833 GGCAGCCTCCGTCTTGCA 62.705 66.667 3.29 0.00 0.00 4.08
4459 4752 3.123620 GCAGCCTCCGTCTTGCAG 61.124 66.667 0.00 0.00 0.00 4.41
4460 4753 3.123620 CAGCCTCCGTCTTGCAGC 61.124 66.667 0.00 0.00 0.00 5.25
4461 4754 3.630013 AGCCTCCGTCTTGCAGCA 61.630 61.111 0.00 0.00 0.00 4.41
4462 4755 2.437359 GCCTCCGTCTTGCAGCAT 60.437 61.111 0.00 0.00 0.00 3.79
4463 4756 2.758089 GCCTCCGTCTTGCAGCATG 61.758 63.158 0.00 0.00 40.87 4.06
4464 4757 1.376424 CCTCCGTCTTGCAGCATGT 60.376 57.895 8.09 0.00 39.31 3.21
4465 4758 0.108186 CCTCCGTCTTGCAGCATGTA 60.108 55.000 8.09 0.00 39.31 2.29
4466 4759 1.284657 CTCCGTCTTGCAGCATGTAG 58.715 55.000 8.09 0.00 39.31 2.74
4467 4760 0.894835 TCCGTCTTGCAGCATGTAGA 59.105 50.000 8.09 0.00 39.31 2.59
4468 4761 1.275010 TCCGTCTTGCAGCATGTAGAA 59.725 47.619 8.09 0.00 39.31 2.10
4469 4762 1.662629 CCGTCTTGCAGCATGTAGAAG 59.337 52.381 8.09 5.07 39.31 2.85
4470 4763 2.610433 CGTCTTGCAGCATGTAGAAGA 58.390 47.619 8.09 0.00 39.31 2.87
4471 4764 2.602211 CGTCTTGCAGCATGTAGAAGAG 59.398 50.000 8.09 0.00 39.31 2.85
4472 4765 3.674410 CGTCTTGCAGCATGTAGAAGAGA 60.674 47.826 8.09 0.00 39.31 3.10
4473 4766 3.864583 GTCTTGCAGCATGTAGAAGAGAG 59.135 47.826 8.09 0.00 39.31 3.20
4474 4767 3.513119 TCTTGCAGCATGTAGAAGAGAGT 59.487 43.478 8.09 0.00 39.31 3.24
4475 4768 4.706962 TCTTGCAGCATGTAGAAGAGAGTA 59.293 41.667 8.09 0.00 39.31 2.59
4476 4769 4.645762 TGCAGCATGTAGAAGAGAGTAG 57.354 45.455 0.00 0.00 39.31 2.57
4477 4770 4.273318 TGCAGCATGTAGAAGAGAGTAGA 58.727 43.478 0.00 0.00 39.31 2.59
4478 4771 4.892345 TGCAGCATGTAGAAGAGAGTAGAT 59.108 41.667 0.00 0.00 39.31 1.98
4479 4772 5.362143 TGCAGCATGTAGAAGAGAGTAGATT 59.638 40.000 0.00 0.00 39.31 2.40
4480 4773 5.691305 GCAGCATGTAGAAGAGAGTAGATTG 59.309 44.000 0.00 0.00 39.31 2.67
4481 4774 6.460814 GCAGCATGTAGAAGAGAGTAGATTGA 60.461 42.308 0.00 0.00 39.31 2.57
4482 4775 7.487484 CAGCATGTAGAAGAGAGTAGATTGAA 58.513 38.462 0.00 0.00 0.00 2.69
4483 4776 7.648908 CAGCATGTAGAAGAGAGTAGATTGAAG 59.351 40.741 0.00 0.00 0.00 3.02
4484 4777 7.341769 AGCATGTAGAAGAGAGTAGATTGAAGT 59.658 37.037 0.00 0.00 0.00 3.01
4485 4778 7.647715 GCATGTAGAAGAGAGTAGATTGAAGTC 59.352 40.741 0.00 0.00 0.00 3.01
4486 4779 7.633193 TGTAGAAGAGAGTAGATTGAAGTCC 57.367 40.000 0.00 0.00 0.00 3.85
4487 4780 7.406916 TGTAGAAGAGAGTAGATTGAAGTCCT 58.593 38.462 0.00 0.00 0.00 3.85
4488 4781 7.554835 TGTAGAAGAGAGTAGATTGAAGTCCTC 59.445 40.741 0.00 0.00 0.00 3.71
4489 4782 5.891551 AGAAGAGAGTAGATTGAAGTCCTCC 59.108 44.000 0.00 0.00 0.00 4.30
4490 4783 5.199982 AGAGAGTAGATTGAAGTCCTCCA 57.800 43.478 0.00 0.00 0.00 3.86
4491 4784 5.584913 AGAGAGTAGATTGAAGTCCTCCAA 58.415 41.667 0.00 0.00 0.00 3.53
4492 4785 5.656416 AGAGAGTAGATTGAAGTCCTCCAAG 59.344 44.000 0.00 0.00 0.00 3.61
4493 4786 5.337788 AGAGTAGATTGAAGTCCTCCAAGT 58.662 41.667 0.00 0.00 0.00 3.16
4494 4787 6.494952 AGAGTAGATTGAAGTCCTCCAAGTA 58.505 40.000 0.00 0.00 0.00 2.24
4495 4788 6.605594 AGAGTAGATTGAAGTCCTCCAAGTAG 59.394 42.308 0.00 0.00 0.00 2.57
4496 4789 4.479786 AGATTGAAGTCCTCCAAGTAGC 57.520 45.455 0.00 0.00 0.00 3.58
4497 4790 3.840666 AGATTGAAGTCCTCCAAGTAGCA 59.159 43.478 0.00 0.00 0.00 3.49
4498 4791 4.472833 AGATTGAAGTCCTCCAAGTAGCAT 59.527 41.667 0.00 0.00 0.00 3.79
4499 4792 3.895232 TGAAGTCCTCCAAGTAGCATC 57.105 47.619 0.00 0.00 0.00 3.91
4500 4793 3.445008 TGAAGTCCTCCAAGTAGCATCT 58.555 45.455 0.00 0.00 0.00 2.90
4501 4794 3.449018 TGAAGTCCTCCAAGTAGCATCTC 59.551 47.826 0.00 0.00 0.00 2.75
4502 4795 2.393646 AGTCCTCCAAGTAGCATCTCC 58.606 52.381 0.00 0.00 0.00 3.71
4503 4796 2.111384 GTCCTCCAAGTAGCATCTCCA 58.889 52.381 0.00 0.00 0.00 3.86
4504 4797 2.501723 GTCCTCCAAGTAGCATCTCCAA 59.498 50.000 0.00 0.00 0.00 3.53
4505 4798 2.768527 TCCTCCAAGTAGCATCTCCAAG 59.231 50.000 0.00 0.00 0.00 3.61
4506 4799 2.503356 CCTCCAAGTAGCATCTCCAAGT 59.497 50.000 0.00 0.00 0.00 3.16
4507 4800 3.706594 CCTCCAAGTAGCATCTCCAAGTA 59.293 47.826 0.00 0.00 0.00 2.24
4508 4801 4.202202 CCTCCAAGTAGCATCTCCAAGTAG 60.202 50.000 0.00 0.00 0.00 2.57
4509 4802 3.133003 TCCAAGTAGCATCTCCAAGTAGC 59.867 47.826 0.00 0.00 0.00 3.58
4510 4803 3.118629 CCAAGTAGCATCTCCAAGTAGCA 60.119 47.826 0.00 0.00 0.00 3.49
4511 4804 4.444022 CCAAGTAGCATCTCCAAGTAGCAT 60.444 45.833 0.00 0.00 0.00 3.79
4512 4805 4.599047 AGTAGCATCTCCAAGTAGCATC 57.401 45.455 0.00 0.00 0.00 3.91
4513 4806 2.522836 AGCATCTCCAAGTAGCATCG 57.477 50.000 0.00 0.00 0.00 3.84
4514 4807 0.864455 GCATCTCCAAGTAGCATCGC 59.136 55.000 0.00 0.00 0.00 4.58
4515 4808 1.807755 GCATCTCCAAGTAGCATCGCA 60.808 52.381 0.00 0.00 0.00 5.10
4516 4809 2.763933 CATCTCCAAGTAGCATCGCAT 58.236 47.619 0.00 0.00 0.00 4.73
4517 4810 3.862264 GCATCTCCAAGTAGCATCGCATA 60.862 47.826 0.00 0.00 0.00 3.14
4518 4811 3.650070 TCTCCAAGTAGCATCGCATAG 57.350 47.619 0.00 0.00 0.00 2.23
4519 4812 2.064762 CTCCAAGTAGCATCGCATAGC 58.935 52.381 0.00 0.00 0.00 2.97
4520 4813 1.412343 TCCAAGTAGCATCGCATAGCA 59.588 47.619 0.00 0.00 0.00 3.49
4521 4814 2.037641 TCCAAGTAGCATCGCATAGCAT 59.962 45.455 0.00 0.00 0.00 3.79
4522 4815 3.258123 TCCAAGTAGCATCGCATAGCATA 59.742 43.478 0.00 0.00 0.00 3.14
4523 4816 3.996363 CCAAGTAGCATCGCATAGCATAA 59.004 43.478 0.00 0.00 0.00 1.90
4524 4817 4.633126 CCAAGTAGCATCGCATAGCATAAT 59.367 41.667 0.00 0.00 0.00 1.28
4525 4818 5.220548 CCAAGTAGCATCGCATAGCATAATC 60.221 44.000 0.00 0.00 0.00 1.75
4526 4819 4.437239 AGTAGCATCGCATAGCATAATCC 58.563 43.478 0.00 0.00 0.00 3.01
4527 4820 3.623906 AGCATCGCATAGCATAATCCT 57.376 42.857 0.00 0.00 0.00 3.24
4528 4821 4.743057 AGCATCGCATAGCATAATCCTA 57.257 40.909 0.00 0.00 0.00 2.94
4529 4822 4.437239 AGCATCGCATAGCATAATCCTAC 58.563 43.478 0.00 0.00 0.00 3.18
4530 4823 3.557595 GCATCGCATAGCATAATCCTACC 59.442 47.826 0.00 0.00 0.00 3.18
4531 4824 3.887621 TCGCATAGCATAATCCTACCC 57.112 47.619 0.00 0.00 0.00 3.69
4532 4825 2.165641 TCGCATAGCATAATCCTACCCG 59.834 50.000 0.00 0.00 0.00 5.28
4533 4826 2.738643 CGCATAGCATAATCCTACCCGG 60.739 54.545 0.00 0.00 0.00 5.73
4534 4827 2.906354 CATAGCATAATCCTACCCGGC 58.094 52.381 0.00 0.00 0.00 6.13
4535 4828 0.892755 TAGCATAATCCTACCCGGCG 59.107 55.000 0.00 0.00 0.00 6.46
4536 4829 0.830444 AGCATAATCCTACCCGGCGA 60.830 55.000 9.30 0.00 0.00 5.54
4537 4830 0.249398 GCATAATCCTACCCGGCGAT 59.751 55.000 9.30 0.00 0.00 4.58
4538 4831 1.739371 GCATAATCCTACCCGGCGATC 60.739 57.143 9.30 0.00 0.00 3.69
4539 4832 1.134788 CATAATCCTACCCGGCGATCC 60.135 57.143 9.30 0.00 0.00 3.36
4540 4833 0.113776 TAATCCTACCCGGCGATCCT 59.886 55.000 9.30 0.00 0.00 3.24
4541 4834 1.186267 AATCCTACCCGGCGATCCTC 61.186 60.000 9.30 0.00 0.00 3.71
4542 4835 3.303928 CCTACCCGGCGATCCTCC 61.304 72.222 9.30 0.00 0.00 4.30
4543 4836 3.303928 CTACCCGGCGATCCTCCC 61.304 72.222 9.30 0.00 0.00 4.30
4544 4837 4.928140 TACCCGGCGATCCTCCCC 62.928 72.222 9.30 0.00 0.00 4.81
4549 4842 3.607661 GGCGATCCTCCCCTCGTC 61.608 72.222 0.00 0.00 37.23 4.20
4550 4843 3.967335 GCGATCCTCCCCTCGTCG 61.967 72.222 0.00 0.00 37.23 5.12
4551 4844 3.967335 CGATCCTCCCCTCGTCGC 61.967 72.222 0.00 0.00 0.00 5.19
4552 4845 2.519780 GATCCTCCCCTCGTCGCT 60.520 66.667 0.00 0.00 0.00 4.93
4553 4846 2.519780 ATCCTCCCCTCGTCGCTC 60.520 66.667 0.00 0.00 0.00 5.03
4554 4847 2.969300 GATCCTCCCCTCGTCGCTCT 62.969 65.000 0.00 0.00 0.00 4.09
4555 4848 3.522731 CCTCCCCTCGTCGCTCTG 61.523 72.222 0.00 0.00 0.00 3.35
4556 4849 2.752238 CTCCCCTCGTCGCTCTGT 60.752 66.667 0.00 0.00 0.00 3.41
4557 4850 3.057547 CTCCCCTCGTCGCTCTGTG 62.058 68.421 0.00 0.00 0.00 3.66
4558 4851 4.135153 CCCCTCGTCGCTCTGTGG 62.135 72.222 0.00 0.00 0.00 4.17
4559 4852 3.062466 CCCTCGTCGCTCTGTGGA 61.062 66.667 0.00 0.00 0.00 4.02
4560 4853 2.636412 CCCTCGTCGCTCTGTGGAA 61.636 63.158 0.00 0.00 0.00 3.53
4561 4854 1.289066 CCTCGTCGCTCTGTGGAAA 59.711 57.895 0.00 0.00 0.00 3.13
4562 4855 0.319555 CCTCGTCGCTCTGTGGAAAA 60.320 55.000 0.00 0.00 0.00 2.29
4563 4856 1.063806 CTCGTCGCTCTGTGGAAAAG 58.936 55.000 0.00 0.00 0.00 2.27
4564 4857 0.944311 TCGTCGCTCTGTGGAAAAGC 60.944 55.000 0.00 0.00 0.00 3.51
4569 4862 1.442769 GCTCTGTGGAAAAGCGATCA 58.557 50.000 0.00 0.00 0.00 2.92
4570 4863 1.129437 GCTCTGTGGAAAAGCGATCAC 59.871 52.381 0.00 0.00 0.00 3.06
4571 4864 1.734465 CTCTGTGGAAAAGCGATCACC 59.266 52.381 0.00 0.00 0.00 4.02
4572 4865 0.443869 CTGTGGAAAAGCGATCACCG 59.556 55.000 0.00 0.00 42.21 4.94
4573 4866 0.953471 TGTGGAAAAGCGATCACCGG 60.953 55.000 0.00 0.00 39.04 5.28
4574 4867 1.376683 TGGAAAAGCGATCACCGGG 60.377 57.895 6.32 0.00 39.04 5.73
4575 4868 1.376812 GGAAAAGCGATCACCGGGT 60.377 57.895 6.32 0.00 39.04 5.28
4576 4869 0.958876 GGAAAAGCGATCACCGGGTT 60.959 55.000 6.32 0.00 39.04 4.11
4577 4870 0.168128 GAAAAGCGATCACCGGGTTG 59.832 55.000 6.32 0.00 39.04 3.77
4578 4871 0.536460 AAAAGCGATCACCGGGTTGT 60.536 50.000 6.32 0.00 39.04 3.32
4579 4872 0.953960 AAAGCGATCACCGGGTTGTC 60.954 55.000 6.32 0.00 39.04 3.18
4580 4873 1.827399 AAGCGATCACCGGGTTGTCT 61.827 55.000 6.32 0.00 39.04 3.41
4581 4874 2.100631 GCGATCACCGGGTTGTCTG 61.101 63.158 6.32 0.00 39.04 3.51
4582 4875 1.292223 CGATCACCGGGTTGTCTGT 59.708 57.895 6.32 0.00 33.91 3.41
4583 4876 1.014044 CGATCACCGGGTTGTCTGTG 61.014 60.000 6.32 0.00 33.91 3.66
4584 4877 0.673644 GATCACCGGGTTGTCTGTGG 60.674 60.000 6.32 0.00 0.00 4.17
4585 4878 1.125093 ATCACCGGGTTGTCTGTGGA 61.125 55.000 6.32 0.00 0.00 4.02
4586 4879 1.147376 CACCGGGTTGTCTGTGGAA 59.853 57.895 6.32 0.00 0.00 3.53
4587 4880 1.147600 ACCGGGTTGTCTGTGGAAC 59.852 57.895 6.32 0.00 37.35 3.62
4588 4881 1.342672 ACCGGGTTGTCTGTGGAACT 61.343 55.000 6.32 0.00 38.04 3.01
4589 4882 0.179029 CCGGGTTGTCTGTGGAACTT 60.179 55.000 0.00 0.00 38.04 2.66
4590 4883 0.944386 CGGGTTGTCTGTGGAACTTG 59.056 55.000 0.00 0.00 38.04 3.16
4591 4884 1.318576 GGGTTGTCTGTGGAACTTGG 58.681 55.000 0.00 0.00 38.04 3.61
4592 4885 1.133915 GGGTTGTCTGTGGAACTTGGA 60.134 52.381 0.00 0.00 38.04 3.53
4593 4886 2.650322 GGTTGTCTGTGGAACTTGGAA 58.350 47.619 0.00 0.00 38.04 3.53
4594 4887 2.618709 GGTTGTCTGTGGAACTTGGAAG 59.381 50.000 0.00 0.00 38.04 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 6.530181 AGTTGGTGAACTTTTTCGAATTTGAC 59.470 34.615 0.00 0.00 39.56 3.18
340 351 9.793252 TTCTTCTTTTTCTCATCTTTCTTTGTG 57.207 29.630 0.00 0.00 0.00 3.33
386 397 4.095932 ACTTTGTTCTTCAGTTCGGTTTCC 59.904 41.667 0.00 0.00 0.00 3.13
475 486 2.094854 GGGATTCGAACACACGACTAGT 60.095 50.000 0.00 0.00 41.97 2.57
478 489 0.037605 GGGGATTCGAACACACGACT 60.038 55.000 0.00 0.00 41.97 4.18
523 545 4.895224 ACGTTCTCTTTTTCCTGGTTTC 57.105 40.909 0.00 0.00 0.00 2.78
673 695 4.785453 CTGGAACGGAGGCTGGGC 62.785 72.222 0.00 0.00 36.31 5.36
711 736 2.597805 GAGAGATCGGCCGGCCTA 60.598 66.667 41.01 33.06 0.00 3.93
731 756 3.920197 TCTCAGGATTTGGTAGGGGAAAA 59.080 43.478 0.00 0.00 0.00 2.29
814 839 1.453928 GAAAAGGGGAGCGATGGGG 60.454 63.158 0.00 0.00 0.00 4.96
815 840 0.034089 AAGAAAAGGGGAGCGATGGG 60.034 55.000 0.00 0.00 0.00 4.00
842 867 0.565674 AATGGGGGTTTTGGACAGGT 59.434 50.000 0.00 0.00 0.00 4.00
952 996 2.280119 CCTGCGCGGCTATTGCTA 60.280 61.111 11.81 0.00 39.59 3.49
956 1000 4.547367 GGGTCCTGCGCGGCTATT 62.547 66.667 11.81 0.00 0.00 1.73
1398 1473 5.451520 GGATCTTAAGAAATCGACCTCGGAA 60.452 44.000 9.71 0.00 40.29 4.30
1434 1509 6.349860 CCCCTAAATTTACAGGTTGCAACTAC 60.350 42.308 27.64 13.20 0.00 2.73
1492 1585 1.095228 CGATGCATACGGCCAAACCT 61.095 55.000 2.24 0.00 43.89 3.50
1494 1587 1.298339 GCGATGCATACGGCCAAAC 60.298 57.895 16.56 0.00 43.89 2.93
1495 1588 1.436195 GAGCGATGCATACGGCCAAA 61.436 55.000 16.56 0.00 43.89 3.28
1496 1589 1.887242 GAGCGATGCATACGGCCAA 60.887 57.895 16.56 0.00 43.89 4.52
1497 1590 2.280119 GAGCGATGCATACGGCCA 60.280 61.111 16.56 0.00 43.89 5.36
1498 1591 2.029666 AGAGCGATGCATACGGCC 59.970 61.111 16.56 0.00 43.89 6.13
1499 1592 0.668706 ATCAGAGCGATGCATACGGC 60.669 55.000 16.56 12.82 45.13 5.68
1500 1593 1.066136 CATCAGAGCGATGCATACGG 58.934 55.000 16.56 4.54 44.95 4.02
1518 1611 2.697147 GGTTTGACCCTGCCTCTGCA 62.697 60.000 0.00 0.00 46.76 4.41
1519 1612 1.973812 GGTTTGACCCTGCCTCTGC 60.974 63.158 0.00 0.00 32.42 4.26
1520 1613 4.404691 GGTTTGACCCTGCCTCTG 57.595 61.111 0.00 0.00 30.04 3.35
1529 1622 3.916359 TTTTGAAAAGGGGGTTTGACC 57.084 42.857 0.00 0.00 37.60 4.02
1669 1762 5.682943 TCATAGAAAGGGACGTTTGTTTG 57.317 39.130 0.00 0.00 0.00 2.93
1706 1799 8.141909 ACTTGATTGCTAGTGTTCGCTATTATA 58.858 33.333 0.00 0.00 0.00 0.98
1707 1800 6.986817 ACTTGATTGCTAGTGTTCGCTATTAT 59.013 34.615 0.00 0.00 0.00 1.28
1711 1804 4.188247 ACTTGATTGCTAGTGTTCGCTA 57.812 40.909 0.00 0.00 0.00 4.26
1712 1805 3.045601 ACTTGATTGCTAGTGTTCGCT 57.954 42.857 0.00 0.00 0.00 4.93
1713 1806 4.921470 TTACTTGATTGCTAGTGTTCGC 57.079 40.909 0.00 0.00 32.42 4.70
1715 1808 5.493735 GCGATTACTTGATTGCTAGTGTTC 58.506 41.667 0.00 0.00 34.28 3.18
1772 2003 1.973281 CATTGCCAGCGGACAAGGT 60.973 57.895 0.00 0.00 0.00 3.50
1870 2105 0.919710 AATACAGGAGGAAGGCCACC 59.080 55.000 5.01 8.40 44.52 4.61
2114 2351 3.950397 TGTCAGAAAACACACAGAAGGT 58.050 40.909 0.00 0.00 0.00 3.50
2126 2363 7.757624 GGTTGAACAAAGTACATTGTCAGAAAA 59.242 33.333 16.17 5.19 42.49 2.29
2461 2698 5.579047 AGGAATCCTCATCGTCTAGATCAT 58.421 41.667 0.00 0.00 37.52 2.45
2486 2723 7.201947 CCCTCCGCATAGAGAATATCAATATCA 60.202 40.741 0.00 0.00 35.82 2.15
2531 2768 4.816925 CCTCTTTTTGGTCTTCTTCTCGTT 59.183 41.667 0.00 0.00 0.00 3.85
2705 2942 2.736192 GCAGAAACTGAACAGAGAGAGC 59.264 50.000 8.87 3.78 32.44 4.09
2757 2994 8.762645 TCATTACCTGACAAGATACTCAGAAAT 58.237 33.333 0.00 0.00 36.75 2.17
2845 3082 7.661536 ACTCTATCACAGCAGGTAGAAAATA 57.338 36.000 0.00 0.00 0.00 1.40
2857 3094 4.985409 GCTAACATGGTACTCTATCACAGC 59.015 45.833 0.00 0.00 0.00 4.40
2906 3143 6.560003 TGATTCCTAAACTAGAATGGCAGA 57.440 37.500 0.00 0.00 0.00 4.26
2957 3194 7.020827 ACTTAATCTGAAACTGGAATGGAGA 57.979 36.000 0.00 0.00 0.00 3.71
3012 3249 1.831652 CTGGGACCGGAGAAAGCAGT 61.832 60.000 9.46 0.00 0.00 4.40
3013 3250 1.078848 CTGGGACCGGAGAAAGCAG 60.079 63.158 9.46 0.00 0.00 4.24
3014 3251 3.068881 CTGGGACCGGAGAAAGCA 58.931 61.111 9.46 0.00 0.00 3.91
3015 3252 2.436824 GCTGGGACCGGAGAAAGC 60.437 66.667 9.46 8.43 0.00 3.51
3016 3253 1.078848 CAGCTGGGACCGGAGAAAG 60.079 63.158 9.46 0.96 0.00 2.62
3159 3424 7.966812 AGAGCAGGTATGTAAATATCATCACA 58.033 34.615 0.00 0.00 0.00 3.58
3258 3523 2.962125 GATGATGCTGAGATCATCGCT 58.038 47.619 14.54 0.00 45.42 4.93
3279 3544 1.322442 GCTTCAACCCAAACAGCTCT 58.678 50.000 0.00 0.00 0.00 4.09
3288 3553 0.260230 TCCCAAAGTGCTTCAACCCA 59.740 50.000 0.00 0.00 0.00 4.51
3369 3634 5.331876 CCTCGAGGTCATAGAAATATCCC 57.668 47.826 24.04 0.00 0.00 3.85
3384 3649 1.301677 GCTGCTTTTCCACCTCGAGG 61.302 60.000 30.11 30.11 42.17 4.63
3405 3670 0.874175 CGAAGTCTGTTGTCGTGGCA 60.874 55.000 0.00 0.00 0.00 4.92
3414 3679 1.724929 CGCGACGTCGAAGTCTGTT 60.725 57.895 39.74 0.00 43.02 3.16
3456 3721 3.060895 CGGACAGAATAAAGAACGTGAGC 59.939 47.826 0.00 0.00 0.00 4.26
3489 3754 2.745698 CTCAGCAGTGTGCCCAGA 59.254 61.111 0.00 0.00 46.52 3.86
3490 3755 3.054503 GCTCAGCAGTGTGCCCAG 61.055 66.667 0.00 0.00 46.52 4.45
3588 3853 2.740714 GGTCGCCGTCAGTCAATGC 61.741 63.158 0.00 0.00 0.00 3.56
3646 3911 3.871485 ACAGACCATCAATCAAGCTCTC 58.129 45.455 0.00 0.00 0.00 3.20
3678 3943 3.243636 CCCATGCTCATATTTCAAGTGCC 60.244 47.826 0.00 0.00 0.00 5.01
3694 3959 2.613691 CACAAAAATGAGAGCCCATGC 58.386 47.619 0.00 0.00 37.95 4.06
3735 4000 1.351350 GAACTAGCCAAGACCCAGGTT 59.649 52.381 0.00 0.00 0.00 3.50
3738 4003 1.902508 TCTGAACTAGCCAAGACCCAG 59.097 52.381 0.00 0.00 0.00 4.45
3776 4041 4.980434 CACTAACCCTTCAATACGATACCG 59.020 45.833 0.00 0.00 42.50 4.02
3783 4048 6.258068 GCATCAGTACACTAACCCTTCAATAC 59.742 42.308 0.00 0.00 0.00 1.89
3815 4082 3.454812 CCCAGTTATTATATCCTCGGGGG 59.545 52.174 0.00 0.00 0.00 5.40
3816 4083 4.359105 TCCCAGTTATTATATCCTCGGGG 58.641 47.826 0.00 0.00 0.00 5.73
3817 4084 5.221263 CGATCCCAGTTATTATATCCTCGGG 60.221 48.000 0.00 0.00 0.00 5.14
3857 4124 7.307811 GGGTGAATAAGAATACTACAAATCGCC 60.308 40.741 0.00 0.00 33.99 5.54
3868 4135 7.227156 ACATGATCTGGGGTGAATAAGAATAC 58.773 38.462 0.00 0.00 0.00 1.89
3915 4184 0.111061 ACATGGCTGGCTTCTCACAA 59.889 50.000 2.00 0.00 0.00 3.33
3936 4205 2.504175 ACCAGTAGTACGGGCATCATTT 59.496 45.455 18.23 0.00 36.91 2.32
3956 4225 4.993029 ATACAGAGAGAGCACCAGTAAC 57.007 45.455 0.00 0.00 0.00 2.50
4019 4288 1.796151 CAGCAGTGGCATGTTACCG 59.204 57.895 0.00 0.00 44.61 4.02
4063 4332 4.774124 CCACCTCTGCTTAAATCTGATCA 58.226 43.478 0.00 0.00 0.00 2.92
4067 4336 2.019984 GGCCACCTCTGCTTAAATCTG 58.980 52.381 0.00 0.00 0.00 2.90
4068 4337 1.635487 TGGCCACCTCTGCTTAAATCT 59.365 47.619 0.00 0.00 0.00 2.40
4069 4338 2.019984 CTGGCCACCTCTGCTTAAATC 58.980 52.381 0.00 0.00 0.00 2.17
4070 4339 1.635487 TCTGGCCACCTCTGCTTAAAT 59.365 47.619 0.00 0.00 0.00 1.40
4071 4340 1.064003 TCTGGCCACCTCTGCTTAAA 58.936 50.000 0.00 0.00 0.00 1.52
4072 4341 1.289160 ATCTGGCCACCTCTGCTTAA 58.711 50.000 0.00 0.00 0.00 1.85
4073 4342 1.289160 AATCTGGCCACCTCTGCTTA 58.711 50.000 0.00 0.00 0.00 3.09
4074 4343 0.407139 AAATCTGGCCACCTCTGCTT 59.593 50.000 0.00 0.00 0.00 3.91
4075 4344 1.289160 TAAATCTGGCCACCTCTGCT 58.711 50.000 0.00 0.00 0.00 4.24
4076 4345 2.019984 CTTAAATCTGGCCACCTCTGC 58.980 52.381 0.00 0.00 0.00 4.26
4077 4346 2.019984 GCTTAAATCTGGCCACCTCTG 58.980 52.381 0.00 0.00 0.00 3.35
4078 4347 1.635487 TGCTTAAATCTGGCCACCTCT 59.365 47.619 0.00 0.00 0.00 3.69
4079 4348 1.745653 GTGCTTAAATCTGGCCACCTC 59.254 52.381 0.00 0.00 0.00 3.85
4080 4349 1.616994 GGTGCTTAAATCTGGCCACCT 60.617 52.381 0.00 0.00 0.00 4.00
4081 4350 0.817654 GGTGCTTAAATCTGGCCACC 59.182 55.000 0.00 0.00 0.00 4.61
4082 4351 0.451783 CGGTGCTTAAATCTGGCCAC 59.548 55.000 0.00 0.00 0.00 5.01
4083 4352 0.326595 TCGGTGCTTAAATCTGGCCA 59.673 50.000 4.71 4.71 0.00 5.36
4084 4353 1.401905 CTTCGGTGCTTAAATCTGGCC 59.598 52.381 0.00 0.00 0.00 5.36
4085 4354 2.084546 ACTTCGGTGCTTAAATCTGGC 58.915 47.619 0.00 0.00 0.00 4.85
4086 4355 2.348666 CGACTTCGGTGCTTAAATCTGG 59.651 50.000 0.00 0.00 35.37 3.86
4152 4441 4.285260 TGTGCAGGCATATAGATCTGTCAT 59.715 41.667 5.18 0.00 0.00 3.06
4218 4507 7.752695 CACAGACAGATAAAGTGGAATAAACC 58.247 38.462 0.00 0.00 0.00 3.27
4229 4518 8.093307 AGTATATGATGCCACAGACAGATAAAG 58.907 37.037 0.00 0.00 0.00 1.85
4234 4523 4.022849 CGAGTATATGATGCCACAGACAGA 60.023 45.833 0.00 0.00 0.00 3.41
4280 4573 3.263425 TCTTCGGTGCCTCTAGGATTTTT 59.737 43.478 0.00 0.00 37.39 1.94
4282 4575 2.467880 TCTTCGGTGCCTCTAGGATTT 58.532 47.619 0.00 0.00 37.39 2.17
4291 4584 1.134098 CCCATGTAATCTTCGGTGCCT 60.134 52.381 0.00 0.00 0.00 4.75
4292 4585 1.308998 CCCATGTAATCTTCGGTGCC 58.691 55.000 0.00 0.00 0.00 5.01
4296 4589 1.211949 ACACCCCCATGTAATCTTCGG 59.788 52.381 0.00 0.00 0.00 4.30
4297 4590 2.710096 ACACCCCCATGTAATCTTCG 57.290 50.000 0.00 0.00 0.00 3.79
4307 4600 1.590591 TGCTACACATACACCCCCAT 58.409 50.000 0.00 0.00 0.00 4.00
4308 4601 1.280710 CTTGCTACACATACACCCCCA 59.719 52.381 0.00 0.00 0.00 4.96
4309 4602 1.408266 CCTTGCTACACATACACCCCC 60.408 57.143 0.00 0.00 0.00 5.40
4310 4603 1.557832 TCCTTGCTACACATACACCCC 59.442 52.381 0.00 0.00 0.00 4.95
4311 4604 2.906354 CTCCTTGCTACACATACACCC 58.094 52.381 0.00 0.00 0.00 4.61
4312 4605 2.280628 GCTCCTTGCTACACATACACC 58.719 52.381 0.00 0.00 38.95 4.16
4324 4617 3.743396 GCATATGTAGTGTAGCTCCTTGC 59.257 47.826 4.29 0.00 43.29 4.01
4325 4618 4.948847 TGCATATGTAGTGTAGCTCCTTG 58.051 43.478 4.29 0.00 0.00 3.61
4326 4619 5.512060 CCATGCATATGTAGTGTAGCTCCTT 60.512 44.000 0.00 0.00 32.21 3.36
4327 4620 4.020751 CCATGCATATGTAGTGTAGCTCCT 60.021 45.833 0.00 0.00 32.21 3.69
4328 4621 4.248859 CCATGCATATGTAGTGTAGCTCC 58.751 47.826 0.00 0.00 32.21 4.70
4329 4622 4.248859 CCCATGCATATGTAGTGTAGCTC 58.751 47.826 0.00 0.00 32.21 4.09
4330 4623 3.648067 ACCCATGCATATGTAGTGTAGCT 59.352 43.478 0.00 0.00 32.21 3.32
4331 4624 4.008074 ACCCATGCATATGTAGTGTAGC 57.992 45.455 0.00 0.00 32.21 3.58
4332 4625 8.478066 ACATATACCCATGCATATGTAGTGTAG 58.522 37.037 17.44 8.75 43.30 2.74
4333 4626 8.257306 CACATATACCCATGCATATGTAGTGTA 58.743 37.037 18.05 3.83 43.28 2.90
4334 4627 7.105588 CACATATACCCATGCATATGTAGTGT 58.894 38.462 18.05 13.12 43.28 3.55
4335 4628 7.105588 ACACATATACCCATGCATATGTAGTG 58.894 38.462 18.05 13.55 43.28 2.74
4336 4629 7.257790 ACACATATACCCATGCATATGTAGT 57.742 36.000 18.05 15.89 43.28 2.73
4337 4630 9.665719 TTTACACATATACCCATGCATATGTAG 57.334 33.333 18.05 15.51 43.28 2.74
4338 4631 9.665719 CTTTACACATATACCCATGCATATGTA 57.334 33.333 18.05 9.41 43.28 2.29
4339 4632 7.611467 CCTTTACACATATACCCATGCATATGT 59.389 37.037 14.97 14.97 45.05 2.29
4340 4633 7.067372 CCCTTTACACATATACCCATGCATATG 59.933 40.741 0.00 14.08 39.81 1.78
4341 4634 7.118723 CCCTTTACACATATACCCATGCATAT 58.881 38.462 0.00 0.00 0.00 1.78
4342 4635 6.480763 CCCTTTACACATATACCCATGCATA 58.519 40.000 0.00 0.00 0.00 3.14
4343 4636 5.324409 CCCTTTACACATATACCCATGCAT 58.676 41.667 0.00 0.00 0.00 3.96
4344 4637 4.724399 CCCTTTACACATATACCCATGCA 58.276 43.478 0.00 0.00 0.00 3.96
4345 4638 3.506067 GCCCTTTACACATATACCCATGC 59.494 47.826 0.00 0.00 0.00 4.06
4346 4639 4.079253 GGCCCTTTACACATATACCCATG 58.921 47.826 0.00 0.00 0.00 3.66
4347 4640 3.724738 TGGCCCTTTACACATATACCCAT 59.275 43.478 0.00 0.00 0.00 4.00
4348 4641 3.124066 TGGCCCTTTACACATATACCCA 58.876 45.455 0.00 0.00 0.00 4.51
4349 4642 3.868619 TGGCCCTTTACACATATACCC 57.131 47.619 0.00 0.00 0.00 3.69
4350 4643 5.815740 CGATATGGCCCTTTACACATATACC 59.184 44.000 0.00 0.00 36.83 2.73
4351 4644 5.815740 CCGATATGGCCCTTTACACATATAC 59.184 44.000 0.00 0.00 36.83 1.47
4352 4645 5.486063 ACCGATATGGCCCTTTACACATATA 59.514 40.000 0.00 0.00 43.94 0.86
4353 4646 4.288626 ACCGATATGGCCCTTTACACATAT 59.711 41.667 0.00 0.00 43.94 1.78
4354 4647 3.649023 ACCGATATGGCCCTTTACACATA 59.351 43.478 0.00 0.00 43.94 2.29
4355 4648 2.441750 ACCGATATGGCCCTTTACACAT 59.558 45.455 0.00 0.00 43.94 3.21
4356 4649 1.841277 ACCGATATGGCCCTTTACACA 59.159 47.619 0.00 0.00 43.94 3.72
4357 4650 2.218603 CACCGATATGGCCCTTTACAC 58.781 52.381 0.00 0.00 43.94 2.90
4358 4651 1.142060 CCACCGATATGGCCCTTTACA 59.858 52.381 0.00 0.00 43.94 2.41
4359 4652 1.418637 TCCACCGATATGGCCCTTTAC 59.581 52.381 0.00 0.00 43.94 2.01
4360 4653 1.418637 GTCCACCGATATGGCCCTTTA 59.581 52.381 0.00 0.00 43.94 1.85
4361 4654 0.182775 GTCCACCGATATGGCCCTTT 59.817 55.000 0.00 0.00 43.94 3.11
4362 4655 0.694444 AGTCCACCGATATGGCCCTT 60.694 55.000 0.00 0.00 43.94 3.95
4363 4656 1.074471 AGTCCACCGATATGGCCCT 60.074 57.895 0.00 0.00 43.94 5.19
4364 4657 1.071471 CAGTCCACCGATATGGCCC 59.929 63.158 0.00 0.00 43.94 5.80
4365 4658 0.468226 TTCAGTCCACCGATATGGCC 59.532 55.000 0.00 0.00 43.94 5.36
4366 4659 1.139058 AGTTCAGTCCACCGATATGGC 59.861 52.381 0.00 0.00 43.94 4.40
4367 4660 2.826428 CAGTTCAGTCCACCGATATGG 58.174 52.381 0.00 0.00 46.41 2.74
4368 4661 2.205074 GCAGTTCAGTCCACCGATATG 58.795 52.381 0.00 0.00 0.00 1.78
4369 4662 1.831106 TGCAGTTCAGTCCACCGATAT 59.169 47.619 0.00 0.00 0.00 1.63
4370 4663 1.204704 CTGCAGTTCAGTCCACCGATA 59.795 52.381 5.25 0.00 38.02 2.92
4371 4664 0.036952 CTGCAGTTCAGTCCACCGAT 60.037 55.000 5.25 0.00 38.02 4.18
4372 4665 1.112916 TCTGCAGTTCAGTCCACCGA 61.113 55.000 14.67 0.00 43.32 4.69
4373 4666 0.249868 TTCTGCAGTTCAGTCCACCG 60.250 55.000 14.67 0.00 43.32 4.94
4374 4667 1.808945 CATTCTGCAGTTCAGTCCACC 59.191 52.381 14.67 0.00 43.32 4.61
4375 4668 1.198637 GCATTCTGCAGTTCAGTCCAC 59.801 52.381 14.67 0.00 44.26 4.02
4376 4669 1.527034 GCATTCTGCAGTTCAGTCCA 58.473 50.000 14.67 0.00 44.26 4.02
4387 4680 2.883386 CCCTCTTATTCTGGCATTCTGC 59.117 50.000 0.00 0.00 44.08 4.26
4388 4681 3.484407 CCCCTCTTATTCTGGCATTCTG 58.516 50.000 0.00 0.00 0.00 3.02
4389 4682 2.444766 CCCCCTCTTATTCTGGCATTCT 59.555 50.000 0.00 0.00 0.00 2.40
4390 4683 2.443255 TCCCCCTCTTATTCTGGCATTC 59.557 50.000 0.00 0.00 0.00 2.67
4391 4684 2.502745 TCCCCCTCTTATTCTGGCATT 58.497 47.619 0.00 0.00 0.00 3.56
4392 4685 2.212752 TCCCCCTCTTATTCTGGCAT 57.787 50.000 0.00 0.00 0.00 4.40
4393 4686 2.212752 ATCCCCCTCTTATTCTGGCA 57.787 50.000 0.00 0.00 0.00 4.92
4394 4687 2.026729 GCTATCCCCCTCTTATTCTGGC 60.027 54.545 0.00 0.00 0.00 4.85
4395 4688 3.525862 AGCTATCCCCCTCTTATTCTGG 58.474 50.000 0.00 0.00 0.00 3.86
4396 4689 6.126911 GGATTAGCTATCCCCCTCTTATTCTG 60.127 46.154 0.00 0.00 46.20 3.02
4397 4690 5.967551 GGATTAGCTATCCCCCTCTTATTCT 59.032 44.000 0.00 0.00 46.20 2.40
4398 4691 6.241882 GGATTAGCTATCCCCCTCTTATTC 57.758 45.833 0.00 0.00 46.20 1.75
4410 4703 5.699097 AGTCTTCGACAGGATTAGCTATC 57.301 43.478 0.00 0.00 34.60 2.08
4411 4704 5.179742 CGTAGTCTTCGACAGGATTAGCTAT 59.820 44.000 0.00 0.00 34.60 2.97
4412 4705 4.510711 CGTAGTCTTCGACAGGATTAGCTA 59.489 45.833 0.00 0.00 34.60 3.32
4413 4706 3.312973 CGTAGTCTTCGACAGGATTAGCT 59.687 47.826 0.00 0.00 34.60 3.32
4414 4707 3.619729 CGTAGTCTTCGACAGGATTAGC 58.380 50.000 0.00 0.00 34.60 3.09
4415 4708 3.312973 AGCGTAGTCTTCGACAGGATTAG 59.687 47.826 2.72 0.00 34.60 1.73
4416 4709 3.276857 AGCGTAGTCTTCGACAGGATTA 58.723 45.455 2.72 0.00 34.60 1.75
4417 4710 2.093106 AGCGTAGTCTTCGACAGGATT 58.907 47.619 2.72 0.00 34.60 3.01
4418 4711 1.752683 AGCGTAGTCTTCGACAGGAT 58.247 50.000 2.72 0.00 34.60 3.24
4419 4712 1.467734 GAAGCGTAGTCTTCGACAGGA 59.532 52.381 2.72 0.00 34.60 3.86
4420 4713 1.469308 AGAAGCGTAGTCTTCGACAGG 59.531 52.381 2.72 0.00 42.44 4.00
4421 4714 2.510874 CAGAAGCGTAGTCTTCGACAG 58.489 52.381 2.72 0.00 42.44 3.51
4422 4715 1.199327 CCAGAAGCGTAGTCTTCGACA 59.801 52.381 2.72 0.00 42.44 4.35
4423 4716 1.897641 CCAGAAGCGTAGTCTTCGAC 58.102 55.000 2.72 0.00 42.44 4.20
4424 4717 0.170561 GCCAGAAGCGTAGTCTTCGA 59.829 55.000 2.72 0.00 42.44 3.71
4425 4718 2.654939 GCCAGAAGCGTAGTCTTCG 58.345 57.895 0.00 0.00 42.44 3.79
4435 4728 4.400961 ACGGAGGCTGCCAGAAGC 62.401 66.667 22.65 4.28 42.75 3.86
4436 4729 2.125350 GACGGAGGCTGCCAGAAG 60.125 66.667 22.65 11.37 0.00 2.85
4437 4730 2.217038 AAGACGGAGGCTGCCAGAA 61.217 57.895 22.65 0.00 0.00 3.02
4438 4731 2.604686 AAGACGGAGGCTGCCAGA 60.605 61.111 22.65 0.00 0.00 3.86
4439 4732 2.435586 CAAGACGGAGGCTGCCAG 60.436 66.667 22.65 13.95 0.00 4.85
4440 4733 4.704833 GCAAGACGGAGGCTGCCA 62.705 66.667 22.65 0.00 0.00 4.92
4441 4734 4.704833 TGCAAGACGGAGGCTGCC 62.705 66.667 11.65 11.65 0.00 4.85
4442 4735 3.123620 CTGCAAGACGGAGGCTGC 61.124 66.667 0.00 0.00 34.07 5.25
4443 4736 3.123620 GCTGCAAGACGGAGGCTG 61.124 66.667 0.00 0.00 34.07 4.85
4444 4737 2.964310 ATGCTGCAAGACGGAGGCT 61.964 57.895 6.36 0.00 34.07 4.58
4445 4738 2.437359 ATGCTGCAAGACGGAGGC 60.437 61.111 6.36 0.00 34.07 4.70
4446 4739 0.108186 TACATGCTGCAAGACGGAGG 60.108 55.000 12.28 0.00 34.07 4.30
4447 4740 1.134995 TCTACATGCTGCAAGACGGAG 60.135 52.381 12.28 4.88 34.07 4.63
4448 4741 0.894835 TCTACATGCTGCAAGACGGA 59.105 50.000 12.28 3.88 34.07 4.69
4449 4742 1.662629 CTTCTACATGCTGCAAGACGG 59.337 52.381 12.28 1.62 34.07 4.79
4450 4743 2.602211 CTCTTCTACATGCTGCAAGACG 59.398 50.000 12.28 5.97 34.07 4.18
4451 4744 3.854666 TCTCTTCTACATGCTGCAAGAC 58.145 45.455 12.28 0.00 34.07 3.01
4452 4745 3.513119 ACTCTCTTCTACATGCTGCAAGA 59.487 43.478 12.28 5.11 34.07 3.02
4453 4746 3.859443 ACTCTCTTCTACATGCTGCAAG 58.141 45.455 6.36 4.49 0.00 4.01
4454 4747 3.969287 ACTCTCTTCTACATGCTGCAA 57.031 42.857 6.36 0.00 0.00 4.08
4455 4748 4.273318 TCTACTCTCTTCTACATGCTGCA 58.727 43.478 4.13 4.13 0.00 4.41
4456 4749 4.909696 TCTACTCTCTTCTACATGCTGC 57.090 45.455 0.00 0.00 0.00 5.25
4457 4750 7.036996 TCAATCTACTCTCTTCTACATGCTG 57.963 40.000 0.00 0.00 0.00 4.41
4458 4751 7.341769 ACTTCAATCTACTCTCTTCTACATGCT 59.658 37.037 0.00 0.00 0.00 3.79
4459 4752 7.488322 ACTTCAATCTACTCTCTTCTACATGC 58.512 38.462 0.00 0.00 0.00 4.06
4460 4753 8.134895 GGACTTCAATCTACTCTCTTCTACATG 58.865 40.741 0.00 0.00 0.00 3.21
4461 4754 8.058847 AGGACTTCAATCTACTCTCTTCTACAT 58.941 37.037 0.00 0.00 0.00 2.29
4462 4755 7.406916 AGGACTTCAATCTACTCTCTTCTACA 58.593 38.462 0.00 0.00 0.00 2.74
4463 4756 7.012989 GGAGGACTTCAATCTACTCTCTTCTAC 59.987 44.444 0.00 0.00 0.00 2.59
4464 4757 7.057894 GGAGGACTTCAATCTACTCTCTTCTA 58.942 42.308 0.00 0.00 0.00 2.10
4465 4758 5.891551 GGAGGACTTCAATCTACTCTCTTCT 59.108 44.000 0.00 0.00 0.00 2.85
4466 4759 5.654650 TGGAGGACTTCAATCTACTCTCTTC 59.345 44.000 0.00 0.00 0.00 2.87
4467 4760 5.584913 TGGAGGACTTCAATCTACTCTCTT 58.415 41.667 0.00 0.00 0.00 2.85
4468 4761 5.199982 TGGAGGACTTCAATCTACTCTCT 57.800 43.478 0.00 0.00 0.00 3.10
4469 4762 5.420739 ACTTGGAGGACTTCAATCTACTCTC 59.579 44.000 0.00 0.00 0.00 3.20
4470 4763 5.337788 ACTTGGAGGACTTCAATCTACTCT 58.662 41.667 0.00 0.00 0.00 3.24
4471 4764 5.669164 ACTTGGAGGACTTCAATCTACTC 57.331 43.478 0.00 0.00 0.00 2.59
4472 4765 5.128008 GCTACTTGGAGGACTTCAATCTACT 59.872 44.000 0.00 0.00 0.00 2.57
4473 4766 5.105310 TGCTACTTGGAGGACTTCAATCTAC 60.105 44.000 0.00 0.00 0.00 2.59
4474 4767 5.023452 TGCTACTTGGAGGACTTCAATCTA 58.977 41.667 0.00 0.00 0.00 1.98
4475 4768 3.840666 TGCTACTTGGAGGACTTCAATCT 59.159 43.478 0.00 0.00 0.00 2.40
4476 4769 4.207891 TGCTACTTGGAGGACTTCAATC 57.792 45.455 0.00 0.00 0.00 2.67
4477 4770 4.472833 AGATGCTACTTGGAGGACTTCAAT 59.527 41.667 0.00 0.00 0.00 2.57
4478 4771 3.840666 AGATGCTACTTGGAGGACTTCAA 59.159 43.478 0.00 0.00 0.00 2.69
4479 4772 3.445008 AGATGCTACTTGGAGGACTTCA 58.555 45.455 0.00 0.00 0.00 3.02
4480 4773 3.181470 GGAGATGCTACTTGGAGGACTTC 60.181 52.174 0.00 0.00 0.00 3.01
4481 4774 2.769095 GGAGATGCTACTTGGAGGACTT 59.231 50.000 0.00 0.00 0.00 3.01
4482 4775 2.292521 TGGAGATGCTACTTGGAGGACT 60.293 50.000 0.00 0.00 0.00 3.85
4483 4776 2.111384 TGGAGATGCTACTTGGAGGAC 58.889 52.381 0.00 0.00 0.00 3.85
4484 4777 2.550277 TGGAGATGCTACTTGGAGGA 57.450 50.000 0.00 0.00 0.00 3.71
4485 4778 2.503356 ACTTGGAGATGCTACTTGGAGG 59.497 50.000 0.00 0.00 0.00 4.30
4486 4779 3.902881 ACTTGGAGATGCTACTTGGAG 57.097 47.619 0.00 0.00 0.00 3.86
4487 4780 3.133003 GCTACTTGGAGATGCTACTTGGA 59.867 47.826 0.00 0.00 0.00 3.53
4488 4781 3.118629 TGCTACTTGGAGATGCTACTTGG 60.119 47.826 0.00 0.00 0.00 3.61
4489 4782 4.128925 TGCTACTTGGAGATGCTACTTG 57.871 45.455 0.00 0.00 0.00 3.16
4490 4783 4.500545 CGATGCTACTTGGAGATGCTACTT 60.501 45.833 0.00 0.00 0.00 2.24
4491 4784 3.005261 CGATGCTACTTGGAGATGCTACT 59.995 47.826 0.00 0.00 0.00 2.57
4492 4785 3.312828 CGATGCTACTTGGAGATGCTAC 58.687 50.000 0.00 0.00 0.00 3.58
4493 4786 2.288457 GCGATGCTACTTGGAGATGCTA 60.288 50.000 0.00 0.00 0.00 3.49
4494 4787 1.539929 GCGATGCTACTTGGAGATGCT 60.540 52.381 0.00 0.00 0.00 3.79
4495 4788 0.864455 GCGATGCTACTTGGAGATGC 59.136 55.000 0.00 0.00 0.00 3.91
4496 4789 2.229675 TGCGATGCTACTTGGAGATG 57.770 50.000 0.00 0.00 0.00 2.90
4497 4790 3.616076 GCTATGCGATGCTACTTGGAGAT 60.616 47.826 0.00 0.00 0.00 2.75
4498 4791 2.288457 GCTATGCGATGCTACTTGGAGA 60.288 50.000 0.00 0.00 0.00 3.71
4499 4792 2.064762 GCTATGCGATGCTACTTGGAG 58.935 52.381 0.00 0.00 0.00 3.86
4500 4793 1.412343 TGCTATGCGATGCTACTTGGA 59.588 47.619 0.00 0.00 0.00 3.53
4501 4794 1.869774 TGCTATGCGATGCTACTTGG 58.130 50.000 0.00 0.00 0.00 3.61
4502 4795 5.220548 GGATTATGCTATGCGATGCTACTTG 60.221 44.000 0.00 0.00 0.00 3.16
4503 4796 4.872691 GGATTATGCTATGCGATGCTACTT 59.127 41.667 0.00 0.00 0.00 2.24
4504 4797 4.161189 AGGATTATGCTATGCGATGCTACT 59.839 41.667 0.00 0.00 0.00 2.57
4505 4798 4.437239 AGGATTATGCTATGCGATGCTAC 58.563 43.478 0.00 0.00 0.00 3.58
4506 4799 4.743057 AGGATTATGCTATGCGATGCTA 57.257 40.909 0.00 0.00 0.00 3.49
4507 4800 3.623906 AGGATTATGCTATGCGATGCT 57.376 42.857 0.00 0.00 0.00 3.79
4508 4801 3.557595 GGTAGGATTATGCTATGCGATGC 59.442 47.826 0.00 0.00 0.00 3.91
4509 4802 4.122776 GGGTAGGATTATGCTATGCGATG 58.877 47.826 0.00 0.00 0.00 3.84
4510 4803 3.181475 CGGGTAGGATTATGCTATGCGAT 60.181 47.826 0.00 0.00 0.00 4.58
4511 4804 2.165641 CGGGTAGGATTATGCTATGCGA 59.834 50.000 0.00 0.00 0.00 5.10
4512 4805 2.540515 CGGGTAGGATTATGCTATGCG 58.459 52.381 0.00 0.00 0.00 4.73
4513 4806 2.906354 CCGGGTAGGATTATGCTATGC 58.094 52.381 0.00 0.00 45.00 3.14
4514 4807 2.738643 CGCCGGGTAGGATTATGCTATG 60.739 54.545 2.18 0.00 45.00 2.23
4515 4808 1.480954 CGCCGGGTAGGATTATGCTAT 59.519 52.381 2.18 0.00 45.00 2.97
4516 4809 0.892755 CGCCGGGTAGGATTATGCTA 59.107 55.000 2.18 0.00 45.00 3.49
4517 4810 0.830444 TCGCCGGGTAGGATTATGCT 60.830 55.000 2.18 0.00 45.00 3.79
4518 4811 0.249398 ATCGCCGGGTAGGATTATGC 59.751 55.000 2.18 0.00 45.00 3.14
4519 4812 1.134788 GGATCGCCGGGTAGGATTATG 60.135 57.143 2.18 0.00 45.00 1.90
4520 4813 1.192428 GGATCGCCGGGTAGGATTAT 58.808 55.000 2.18 0.00 45.00 1.28
4521 4814 0.113776 AGGATCGCCGGGTAGGATTA 59.886 55.000 2.18 0.00 45.00 1.75
4522 4815 1.152312 AGGATCGCCGGGTAGGATT 60.152 57.895 2.18 0.00 45.00 3.01
4523 4816 1.606889 GAGGATCGCCGGGTAGGAT 60.607 63.158 2.18 0.00 45.00 3.24
4524 4817 2.203451 GAGGATCGCCGGGTAGGA 60.203 66.667 2.18 0.00 45.00 2.94
4525 4818 3.303928 GGAGGATCGCCGGGTAGG 61.304 72.222 2.18 0.00 44.97 3.18
4526 4819 3.303928 GGGAGGATCGCCGGGTAG 61.304 72.222 2.18 0.00 43.06 3.18
4534 4827 3.967335 GCGACGAGGGGAGGATCG 61.967 72.222 0.00 0.00 44.36 3.69
4535 4828 2.519780 AGCGACGAGGGGAGGATC 60.520 66.667 0.00 0.00 0.00 3.36
4536 4829 2.519780 GAGCGACGAGGGGAGGAT 60.520 66.667 0.00 0.00 0.00 3.24
4537 4830 3.729489 AGAGCGACGAGGGGAGGA 61.729 66.667 0.00 0.00 0.00 3.71
4538 4831 3.522731 CAGAGCGACGAGGGGAGG 61.523 72.222 0.00 0.00 0.00 4.30
4539 4832 2.752238 ACAGAGCGACGAGGGGAG 60.752 66.667 0.00 0.00 0.00 4.30
4540 4833 3.062466 CACAGAGCGACGAGGGGA 61.062 66.667 0.00 0.00 0.00 4.81
4541 4834 4.135153 CCACAGAGCGACGAGGGG 62.135 72.222 0.00 0.00 0.00 4.79
4542 4835 2.154798 TTTCCACAGAGCGACGAGGG 62.155 60.000 0.00 0.00 0.00 4.30
4543 4836 0.319555 TTTTCCACAGAGCGACGAGG 60.320 55.000 0.00 0.00 0.00 4.63
4544 4837 1.063806 CTTTTCCACAGAGCGACGAG 58.936 55.000 0.00 0.00 0.00 4.18
4545 4838 0.944311 GCTTTTCCACAGAGCGACGA 60.944 55.000 0.00 0.00 0.00 4.20
4546 4839 1.493311 GCTTTTCCACAGAGCGACG 59.507 57.895 0.00 0.00 0.00 5.12
4550 4843 1.129437 GTGATCGCTTTTCCACAGAGC 59.871 52.381 0.00 0.00 0.00 4.09
4551 4844 1.734465 GGTGATCGCTTTTCCACAGAG 59.266 52.381 6.18 0.00 0.00 3.35
4552 4845 1.808411 GGTGATCGCTTTTCCACAGA 58.192 50.000 6.18 0.00 0.00 3.41
4553 4846 0.443869 CGGTGATCGCTTTTCCACAG 59.556 55.000 6.18 0.00 0.00 3.66
4554 4847 0.953471 CCGGTGATCGCTTTTCCACA 60.953 55.000 6.18 0.00 37.59 4.17
4555 4848 1.644786 CCCGGTGATCGCTTTTCCAC 61.645 60.000 6.18 0.00 37.59 4.02
4556 4849 1.376683 CCCGGTGATCGCTTTTCCA 60.377 57.895 6.18 0.00 37.59 3.53
4557 4850 0.958876 AACCCGGTGATCGCTTTTCC 60.959 55.000 6.18 0.00 37.59 3.13
4558 4851 0.168128 CAACCCGGTGATCGCTTTTC 59.832 55.000 6.18 0.00 37.59 2.29
4559 4852 0.536460 ACAACCCGGTGATCGCTTTT 60.536 50.000 6.18 0.00 37.59 2.27
4560 4853 0.953960 GACAACCCGGTGATCGCTTT 60.954 55.000 6.18 0.00 37.59 3.51
4561 4854 1.375523 GACAACCCGGTGATCGCTT 60.376 57.895 6.18 0.00 37.59 4.68
4562 4855 2.264794 GACAACCCGGTGATCGCT 59.735 61.111 6.18 0.00 37.59 4.93
4563 4856 2.100631 CAGACAACCCGGTGATCGC 61.101 63.158 0.00 0.00 37.59 4.58
4564 4857 1.014044 CACAGACAACCCGGTGATCG 61.014 60.000 0.00 0.00 38.88 3.69
4565 4858 0.673644 CCACAGACAACCCGGTGATC 60.674 60.000 0.00 0.00 33.16 2.92
4566 4859 1.125093 TCCACAGACAACCCGGTGAT 61.125 55.000 0.00 0.00 33.16 3.06
4567 4860 1.338890 TTCCACAGACAACCCGGTGA 61.339 55.000 0.00 0.00 33.16 4.02
4568 4861 1.147376 TTCCACAGACAACCCGGTG 59.853 57.895 0.00 0.00 0.00 4.94
4569 4862 1.147600 GTTCCACAGACAACCCGGT 59.852 57.895 0.00 0.00 0.00 5.28
4570 4863 0.179029 AAGTTCCACAGACAACCCGG 60.179 55.000 0.00 0.00 0.00 5.73
4571 4864 0.944386 CAAGTTCCACAGACAACCCG 59.056 55.000 0.00 0.00 0.00 5.28
4572 4865 1.133915 TCCAAGTTCCACAGACAACCC 60.134 52.381 0.00 0.00 0.00 4.11
4573 4866 2.341846 TCCAAGTTCCACAGACAACC 57.658 50.000 0.00 0.00 0.00 3.77
4574 4867 3.971032 CTTCCAAGTTCCACAGACAAC 57.029 47.619 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.