Multiple sequence alignment - TraesCS7B01G042800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G042800 chr7B 100.000 5170 0 0 1 5170 42081151 42075982 0.000000e+00 9548.0
1 TraesCS7B01G042800 chr7B 77.582 910 188 11 1932 2830 43191310 43192214 2.120000e-148 536.0
2 TraesCS7B01G042800 chr7B 87.879 330 38 2 1135 1463 43190427 43190755 2.260000e-103 387.0
3 TraesCS7B01G042800 chr7A 94.126 3558 161 33 488 4028 93037915 93034389 0.000000e+00 5369.0
4 TraesCS7B01G042800 chr7A 94.384 552 24 4 4066 4613 93034111 93033563 0.000000e+00 841.0
5 TraesCS7B01G042800 chr7A 94.221 398 21 1 4773 5170 93033564 93033169 1.590000e-169 606.0
6 TraesCS7B01G042800 chr7A 88.450 329 38 0 1135 1463 93282216 93281888 1.040000e-106 398.0
7 TraesCS7B01G042800 chr7A 95.266 169 7 1 4607 4774 700811416 700811584 3.070000e-67 267.0
8 TraesCS7B01G042800 chr7A 94.253 174 8 2 4607 4778 324925200 324925027 1.100000e-66 265.0
9 TraesCS7B01G042800 chr7D 92.472 3613 158 48 808 4397 91007488 91003967 0.000000e+00 5060.0
10 TraesCS7B01G042800 chr7D 78.094 913 178 16 1932 2830 91707561 91706657 4.520000e-155 558.0
11 TraesCS7B01G042800 chr7D 88.450 329 35 3 1136 1463 91708365 91708039 1.350000e-105 394.0
12 TraesCS7B01G042800 chr7D 90.850 306 7 5 486 791 91007851 91007567 1.750000e-104 390.0
13 TraesCS7B01G042800 chr7D 88.593 263 29 1 157 419 91008137 91007876 8.350000e-83 318.0
14 TraesCS7B01G042800 chr7D 95.679 162 7 0 1 162 91023610 91023449 1.430000e-65 261.0
15 TraesCS7B01G042800 chr4B 95.238 168 7 1 4612 4778 323794320 323794487 1.100000e-66 265.0
16 TraesCS7B01G042800 chr4B 94.152 171 9 1 4612 4781 531050843 531051013 5.140000e-65 259.0
17 TraesCS7B01G042800 chr6A 92.432 185 10 4 4601 4782 222571419 222571236 1.430000e-65 261.0
18 TraesCS7B01G042800 chr6A 93.678 174 10 1 4603 4775 60016701 60016874 5.140000e-65 259.0
19 TraesCS7B01G042800 chr2B 94.186 172 8 2 4606 4775 404425921 404425750 1.430000e-65 261.0
20 TraesCS7B01G042800 chr5A 93.642 173 10 1 4611 4782 452111599 452111771 1.850000e-64 257.0
21 TraesCS7B01G042800 chr5D 93.064 173 10 2 4611 4781 482316766 482316938 8.590000e-63 252.0
22 TraesCS7B01G042800 chr5D 82.927 123 21 0 1 123 372569162 372569040 1.520000e-20 111.0
23 TraesCS7B01G042800 chr4D 81.938 227 37 4 2 227 484514539 484514762 6.830000e-44 189.0
24 TraesCS7B01G042800 chr3D 79.902 204 41 0 1 204 159631140 159630937 3.220000e-32 150.0
25 TraesCS7B01G042800 chr3A 76.096 251 34 17 5 237 36151561 36151319 1.970000e-19 108.0
26 TraesCS7B01G042800 chr6D 75.806 186 43 2 15 199 361160102 361160286 5.510000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G042800 chr7B 42075982 42081151 5169 True 9548.000000 9548 100.000000 1 5170 1 chr7B.!!$R1 5169
1 TraesCS7B01G042800 chr7B 43190427 43192214 1787 False 461.500000 536 82.730500 1135 2830 2 chr7B.!!$F1 1695
2 TraesCS7B01G042800 chr7A 93033169 93037915 4746 True 2272.000000 5369 94.243667 488 5170 3 chr7A.!!$R3 4682
3 TraesCS7B01G042800 chr7D 91003967 91008137 4170 True 1922.666667 5060 90.638333 157 4397 3 chr7D.!!$R2 4240
4 TraesCS7B01G042800 chr7D 91706657 91708365 1708 True 476.000000 558 83.272000 1136 2830 2 chr7D.!!$R3 1694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.178932 ATATAGCCTCGGCCAGACCA 60.179 55.0 2.24 0.00 43.17 4.02 F
50 51 0.178932 TATAGCCTCGGCCAGACCAT 60.179 55.0 2.24 0.00 43.17 3.55 F
154 155 0.188587 TCCCCTCAGGTCGCATCTAT 59.811 55.0 0.00 0.00 36.75 1.98 F
283 284 0.251297 CAGATGGGGTTGCTTGGTGA 60.251 55.0 0.00 0.00 0.00 4.02 F
434 435 0.459063 AAAATACGTCCGGACCGCTC 60.459 55.0 28.52 3.72 0.00 5.03 F
2326 2664 0.178921 TCTGACTCTCACCCCTGCTT 60.179 55.0 0.00 0.00 0.00 3.91 F
3285 3638 0.036010 CAGCCCCAACTGTGTAGGAG 60.036 60.0 0.00 0.00 32.78 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 2259 0.546122 ATCTGCAATAGGGCCAACGA 59.454 50.000 6.18 0.0 0.00 3.85 R
2115 2453 0.240411 GCAAGAGGTTTGCAGCTGAG 59.760 55.000 20.43 0.0 44.34 3.35 R
2172 2510 0.370273 GCCTCACAAAGTACATCGCG 59.630 55.000 0.00 0.0 0.00 5.87 R
2308 2646 0.689623 AAAGCAGGGGTGAGAGTCAG 59.310 55.000 0.00 0.0 0.00 3.51 R
2502 2846 2.640184 TCTGCAGCATCCTCATCTTTG 58.360 47.619 9.47 0.0 0.00 2.77 R
4015 4369 0.169451 GGTCCCAAAACCGCAATACG 59.831 55.000 0.00 0.0 43.15 3.06 R
4548 5149 0.179073 CTTCCTGATGGCGTCCGATT 60.179 55.000 3.88 0.0 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.047280 TGCAATGTGGACGGCGTC 61.047 61.111 30.72 30.72 0.00 5.19
18 19 4.147322 GCAATGTGGACGGCGTCG 62.147 66.667 31.02 18.34 43.02 5.12
19 20 3.487202 CAATGTGGACGGCGTCGG 61.487 66.667 31.02 13.62 41.39 4.79
20 21 3.687102 AATGTGGACGGCGTCGGA 61.687 61.111 31.02 18.86 41.39 4.55
21 22 3.642778 AATGTGGACGGCGTCGGAG 62.643 63.158 31.02 0.00 41.39 4.63
33 34 3.888093 GTCGGAGCACGGCTTATAT 57.112 52.632 0.00 0.00 45.50 0.86
35 36 2.864968 GTCGGAGCACGGCTTATATAG 58.135 52.381 0.00 0.00 45.50 1.31
45 46 2.301577 GCTTATATAGCCTCGGCCAG 57.698 55.000 2.24 0.00 44.48 4.85
46 47 1.825474 GCTTATATAGCCTCGGCCAGA 59.175 52.381 2.24 0.00 44.48 3.86
47 48 2.417515 GCTTATATAGCCTCGGCCAGAC 60.418 54.545 2.24 0.00 44.48 3.51
48 49 1.848652 TATATAGCCTCGGCCAGACC 58.151 55.000 2.24 0.00 43.17 3.85
49 50 0.178932 ATATAGCCTCGGCCAGACCA 60.179 55.000 2.24 0.00 43.17 4.02
50 51 0.178932 TATAGCCTCGGCCAGACCAT 60.179 55.000 2.24 0.00 43.17 3.55
51 52 1.762522 ATAGCCTCGGCCAGACCATG 61.763 60.000 2.24 0.00 43.17 3.66
54 55 4.147449 CTCGGCCAGACCATGCGA 62.147 66.667 2.24 0.00 39.03 5.10
55 56 3.664025 CTCGGCCAGACCATGCGAA 62.664 63.158 2.24 0.00 39.03 4.70
56 57 3.499737 CGGCCAGACCATGCGAAC 61.500 66.667 2.24 0.00 39.03 3.95
57 58 3.499737 GGCCAGACCATGCGAACG 61.500 66.667 0.00 0.00 38.86 3.95
58 59 3.499737 GCCAGACCATGCGAACGG 61.500 66.667 0.00 0.00 0.00 4.44
59 60 2.264480 CCAGACCATGCGAACGGA 59.736 61.111 0.00 0.00 0.00 4.69
60 61 2.100631 CCAGACCATGCGAACGGAC 61.101 63.158 0.00 0.00 0.00 4.79
61 62 2.126071 AGACCATGCGAACGGACG 60.126 61.111 0.00 0.00 0.00 4.79
62 63 3.186047 GACCATGCGAACGGACGG 61.186 66.667 0.00 0.00 0.00 4.79
63 64 3.927163 GACCATGCGAACGGACGGT 62.927 63.158 6.15 6.15 0.00 4.83
64 65 3.487202 CCATGCGAACGGACGGTG 61.487 66.667 5.76 0.00 0.00 4.94
65 66 2.431771 CATGCGAACGGACGGTGA 60.432 61.111 5.76 0.00 0.00 4.02
66 67 2.126071 ATGCGAACGGACGGTGAG 60.126 61.111 5.76 0.00 0.00 3.51
78 79 2.486966 GGTGAGCCGCTTCAATGC 59.513 61.111 0.00 0.00 0.00 3.56
79 80 2.334946 GGTGAGCCGCTTCAATGCA 61.335 57.895 0.00 0.00 0.00 3.96
80 81 1.136147 GTGAGCCGCTTCAATGCAG 59.864 57.895 0.00 0.00 0.00 4.41
81 82 2.101770 GAGCCGCTTCAATGCAGC 59.898 61.111 0.00 0.00 36.68 5.25
82 83 2.674033 AGCCGCTTCAATGCAGCA 60.674 55.556 5.65 0.00 38.69 4.41
83 84 2.001361 GAGCCGCTTCAATGCAGCAT 62.001 55.000 0.52 0.52 38.69 3.79
84 85 0.749091 AGCCGCTTCAATGCAGCATA 60.749 50.000 8.75 0.00 38.69 3.14
85 86 0.317603 GCCGCTTCAATGCAGCATAG 60.318 55.000 8.75 3.62 37.07 2.23
86 87 0.317603 CCGCTTCAATGCAGCATAGC 60.318 55.000 15.99 15.99 37.07 2.97
93 94 2.992164 TGCAGCATAGCAGCCAGA 59.008 55.556 3.95 0.00 40.32 3.86
94 95 1.153229 TGCAGCATAGCAGCCAGAG 60.153 57.895 3.95 0.00 40.32 3.35
95 96 1.153208 GCAGCATAGCAGCCAGAGT 60.153 57.895 0.00 0.00 35.03 3.24
96 97 0.747283 GCAGCATAGCAGCCAGAGTT 60.747 55.000 0.00 0.00 35.03 3.01
97 98 1.015109 CAGCATAGCAGCCAGAGTTG 58.985 55.000 0.00 0.00 34.23 3.16
98 99 0.907486 AGCATAGCAGCCAGAGTTGA 59.093 50.000 0.00 0.00 34.23 3.18
99 100 1.489649 AGCATAGCAGCCAGAGTTGAT 59.510 47.619 0.00 0.00 34.23 2.57
100 101 2.092538 AGCATAGCAGCCAGAGTTGATT 60.093 45.455 0.00 0.00 34.23 2.57
101 102 2.290093 GCATAGCAGCCAGAGTTGATTC 59.710 50.000 0.00 0.00 0.00 2.52
102 103 2.698855 TAGCAGCCAGAGTTGATTCC 57.301 50.000 0.00 0.00 0.00 3.01
103 104 0.990374 AGCAGCCAGAGTTGATTCCT 59.010 50.000 0.00 0.00 0.00 3.36
104 105 1.353694 AGCAGCCAGAGTTGATTCCTT 59.646 47.619 0.00 0.00 0.00 3.36
105 106 2.573462 AGCAGCCAGAGTTGATTCCTTA 59.427 45.455 0.00 0.00 0.00 2.69
106 107 2.941720 GCAGCCAGAGTTGATTCCTTAG 59.058 50.000 0.00 0.00 0.00 2.18
107 108 3.539604 CAGCCAGAGTTGATTCCTTAGG 58.460 50.000 0.00 0.00 0.00 2.69
108 109 3.198635 CAGCCAGAGTTGATTCCTTAGGA 59.801 47.826 0.00 0.00 0.00 2.94
109 110 3.846588 AGCCAGAGTTGATTCCTTAGGAA 59.153 43.478 16.73 16.73 46.39 3.36
110 111 4.080638 AGCCAGAGTTGATTCCTTAGGAAG 60.081 45.833 19.16 3.56 45.48 3.46
111 112 4.195416 CCAGAGTTGATTCCTTAGGAAGC 58.805 47.826 21.03 21.03 45.48 3.86
112 113 4.080638 CCAGAGTTGATTCCTTAGGAAGCT 60.081 45.833 26.52 17.10 46.83 3.74
113 114 4.874966 CAGAGTTGATTCCTTAGGAAGCTG 59.125 45.833 26.52 14.31 46.83 4.24
114 115 3.615155 AGTTGATTCCTTAGGAAGCTGC 58.385 45.455 26.52 19.08 46.83 5.25
115 116 2.315925 TGATTCCTTAGGAAGCTGCG 57.684 50.000 26.52 0.00 46.83 5.18
116 117 1.555075 TGATTCCTTAGGAAGCTGCGT 59.445 47.619 26.52 6.53 46.83 5.24
117 118 2.205911 GATTCCTTAGGAAGCTGCGTC 58.794 52.381 20.62 8.00 45.48 5.19
118 119 1.267121 TTCCTTAGGAAGCTGCGTCT 58.733 50.000 10.01 6.60 36.71 4.18
119 120 0.532573 TCCTTAGGAAGCTGCGTCTG 59.467 55.000 14.90 4.10 0.00 3.51
120 121 1.086634 CCTTAGGAAGCTGCGTCTGC 61.087 60.000 14.90 0.00 43.20 4.26
130 131 2.099062 GCGTCTGCATTGAAGCGG 59.901 61.111 9.52 0.00 42.15 5.52
131 132 2.099062 CGTCTGCATTGAAGCGGC 59.901 61.111 0.00 0.00 40.71 6.53
132 133 2.099062 GTCTGCATTGAAGCGGCG 59.901 61.111 0.51 0.51 40.71 6.46
133 134 2.047370 TCTGCATTGAAGCGGCGA 60.047 55.556 12.98 0.00 40.71 5.54
134 135 2.099062 CTGCATTGAAGCGGCGAC 59.901 61.111 12.98 1.23 37.31 5.19
135 136 2.358615 TGCATTGAAGCGGCGACT 60.359 55.556 12.98 4.18 37.31 4.18
136 137 2.301902 CTGCATTGAAGCGGCGACTC 62.302 60.000 12.98 6.37 37.31 3.36
137 138 3.093278 CATTGAAGCGGCGACTCC 58.907 61.111 12.98 0.00 0.00 3.85
138 139 2.125106 ATTGAAGCGGCGACTCCC 60.125 61.111 12.98 4.10 0.00 4.30
139 140 3.682292 ATTGAAGCGGCGACTCCCC 62.682 63.158 12.98 1.66 0.00 4.81
141 142 4.516195 GAAGCGGCGACTCCCCTC 62.516 72.222 12.98 0.00 0.00 4.30
146 147 3.462678 GGCGACTCCCCTCAGGTC 61.463 72.222 0.00 0.00 36.75 3.85
148 149 3.827898 CGACTCCCCTCAGGTCGC 61.828 72.222 0.00 0.00 44.32 5.19
149 150 2.680352 GACTCCCCTCAGGTCGCA 60.680 66.667 0.00 0.00 36.75 5.10
150 151 2.039624 ACTCCCCTCAGGTCGCAT 59.960 61.111 0.00 0.00 36.75 4.73
151 152 2.022240 GACTCCCCTCAGGTCGCATC 62.022 65.000 0.00 0.00 36.75 3.91
152 153 1.760086 CTCCCCTCAGGTCGCATCT 60.760 63.158 0.00 0.00 36.75 2.90
153 154 0.468214 CTCCCCTCAGGTCGCATCTA 60.468 60.000 0.00 0.00 36.75 1.98
154 155 0.188587 TCCCCTCAGGTCGCATCTAT 59.811 55.000 0.00 0.00 36.75 1.98
155 156 1.051812 CCCCTCAGGTCGCATCTATT 58.948 55.000 0.00 0.00 0.00 1.73
188 189 3.366915 TCCGGTCACATCACGCGA 61.367 61.111 15.93 0.00 0.00 5.87
254 255 2.032634 GTGCATCGGACGGAAAGCA 61.033 57.895 8.71 8.71 37.40 3.91
256 257 2.032634 GCATCGGACGGAAAGCACA 61.033 57.895 6.11 0.00 32.03 4.57
257 258 1.369091 GCATCGGACGGAAAGCACAT 61.369 55.000 6.11 0.00 32.03 3.21
265 266 1.344438 ACGGAAAGCACATGAGAGACA 59.656 47.619 0.00 0.00 0.00 3.41
283 284 0.251297 CAGATGGGGTTGCTTGGTGA 60.251 55.000 0.00 0.00 0.00 4.02
306 307 1.513586 GGTTAGTCAGTCGCGGACG 60.514 63.158 6.13 0.00 40.20 4.79
307 308 1.208614 GTTAGTCAGTCGCGGACGT 59.791 57.895 6.13 0.00 40.20 4.34
350 351 6.599244 CCATAAAGCCTCACAGTTTATCTCAA 59.401 38.462 0.00 0.00 0.00 3.02
358 359 4.213270 TCACAGTTTATCTCAAGTTTGCGG 59.787 41.667 0.00 0.00 0.00 5.69
359 360 3.502211 ACAGTTTATCTCAAGTTTGCGGG 59.498 43.478 0.00 0.00 0.00 6.13
364 365 5.776173 TTATCTCAAGTTTGCGGGAAAAA 57.224 34.783 0.00 0.00 0.00 1.94
390 391 0.663153 GCCATAACCATTGAGCGGAC 59.337 55.000 0.00 0.00 0.00 4.79
419 420 6.279882 ACGGAAATGTGTTGAATGACAAAAT 58.720 32.000 0.00 0.00 40.36 1.82
420 421 7.429633 ACGGAAATGTGTTGAATGACAAAATA 58.570 30.769 0.00 0.00 40.36 1.40
421 422 7.381139 ACGGAAATGTGTTGAATGACAAAATAC 59.619 33.333 0.00 0.00 40.36 1.89
423 424 7.381139 GGAAATGTGTTGAATGACAAAATACGT 59.619 33.333 0.00 0.00 40.36 3.57
424 425 7.851822 AATGTGTTGAATGACAAAATACGTC 57.148 32.000 0.00 0.00 40.36 4.34
425 426 5.753744 TGTGTTGAATGACAAAATACGTCC 58.246 37.500 0.00 0.00 40.36 4.79
426 427 4.843984 GTGTTGAATGACAAAATACGTCCG 59.156 41.667 0.00 0.00 40.36 4.79
427 428 4.083749 TGTTGAATGACAAAATACGTCCGG 60.084 41.667 0.00 0.00 40.36 5.14
428 429 3.927854 TGAATGACAAAATACGTCCGGA 58.072 40.909 0.00 0.00 32.15 5.14
430 431 2.083167 TGACAAAATACGTCCGGACC 57.917 50.000 28.52 11.59 32.15 4.46
433 434 0.738412 CAAAATACGTCCGGACCGCT 60.738 55.000 28.52 13.60 0.00 5.52
434 435 0.459063 AAAATACGTCCGGACCGCTC 60.459 55.000 28.52 3.72 0.00 5.03
438 439 4.609247 CGTCCGGACCGCTCGATC 62.609 72.222 28.52 0.46 0.00 3.69
439 440 4.267503 GTCCGGACCGCTCGATCC 62.268 72.222 24.75 0.00 0.00 3.36
447 448 4.514577 CGCTCGATCCGGCCTGTT 62.515 66.667 0.00 0.00 0.00 3.16
448 449 2.892425 GCTCGATCCGGCCTGTTG 60.892 66.667 0.00 0.00 0.00 3.33
449 450 2.892425 CTCGATCCGGCCTGTTGC 60.892 66.667 0.00 0.00 40.16 4.17
450 451 4.812476 TCGATCCGGCCTGTTGCG 62.812 66.667 0.00 0.35 42.61 4.85
458 459 3.747976 GCCTGTTGCGGGCGATTT 61.748 61.111 2.99 0.00 46.48 2.17
459 460 2.403378 GCCTGTTGCGGGCGATTTA 61.403 57.895 2.99 0.00 46.48 1.40
460 461 1.721487 CCTGTTGCGGGCGATTTAG 59.279 57.895 0.00 0.00 0.00 1.85
461 462 1.714899 CCTGTTGCGGGCGATTTAGG 61.715 60.000 0.00 0.00 0.00 2.69
462 463 1.714899 CTGTTGCGGGCGATTTAGGG 61.715 60.000 0.00 0.00 0.00 3.53
463 464 2.124487 TTGCGGGCGATTTAGGGG 60.124 61.111 0.00 0.00 0.00 4.79
464 465 4.868116 TGCGGGCGATTTAGGGGC 62.868 66.667 0.00 0.00 0.00 5.80
469 470 4.868116 GCGATTTAGGGGCCGGCA 62.868 66.667 30.85 6.55 0.00 5.69
470 471 2.113139 CGATTTAGGGGCCGGCAT 59.887 61.111 30.85 16.22 0.00 4.40
471 472 1.528309 CGATTTAGGGGCCGGCATT 60.528 57.895 30.85 15.35 0.00 3.56
472 473 1.795170 CGATTTAGGGGCCGGCATTG 61.795 60.000 30.85 11.99 0.00 2.82
473 474 1.457455 ATTTAGGGGCCGGCATTGG 60.457 57.895 30.85 0.00 0.00 3.16
474 475 1.943730 ATTTAGGGGCCGGCATTGGA 61.944 55.000 30.85 9.56 0.00 3.53
475 476 2.566111 TTTAGGGGCCGGCATTGGAG 62.566 60.000 30.85 0.00 0.00 3.86
477 478 4.209866 GGGGCCGGCATTGGAGAT 62.210 66.667 30.85 0.00 0.00 2.75
478 479 2.908940 GGGCCGGCATTGGAGATG 60.909 66.667 30.85 0.00 0.00 2.90
479 480 3.599704 GGCCGGCATTGGAGATGC 61.600 66.667 30.85 1.84 43.85 3.91
484 485 4.360643 GCATTGGAGATGCCCCAA 57.639 55.556 0.00 0.00 46.48 4.12
573 574 1.851053 CGACAGATCATCAGCAGTTCG 59.149 52.381 0.00 0.00 0.00 3.95
631 632 3.535280 TTCCTTTGCAAAAAGTCCACC 57.465 42.857 13.84 0.00 0.00 4.61
636 637 4.273235 CCTTTGCAAAAAGTCCACCATTTC 59.727 41.667 13.84 0.00 0.00 2.17
638 640 2.223923 TGCAAAAAGTCCACCATTTCCG 60.224 45.455 0.00 0.00 0.00 4.30
672 674 1.467342 ACAGCGCGTAAAATCTTTCCC 59.533 47.619 8.43 0.00 0.00 3.97
674 676 1.737793 AGCGCGTAAAATCTTTCCCAG 59.262 47.619 8.43 0.00 0.00 4.45
838 906 2.438434 CCGGCCGGAAATCAGCTT 60.438 61.111 41.82 0.00 37.50 3.74
844 912 2.485479 GGCCGGAAATCAGCTTCAGATA 60.485 50.000 5.05 0.00 0.00 1.98
853 921 5.998454 ATCAGCTTCAGATACATTTTCGG 57.002 39.130 0.00 0.00 0.00 4.30
902 970 1.225745 CATCGACGCCGCTTCAAAC 60.226 57.895 0.00 0.00 35.37 2.93
963 1031 1.476845 TAGTCCTTTGCCACGCCTGA 61.477 55.000 0.00 0.00 0.00 3.86
964 1032 2.281484 TCCTTTGCCACGCCTGAC 60.281 61.111 0.00 0.00 0.00 3.51
965 1033 3.365265 CCTTTGCCACGCCTGACC 61.365 66.667 0.00 0.00 0.00 4.02
966 1034 2.281761 CTTTGCCACGCCTGACCT 60.282 61.111 0.00 0.00 0.00 3.85
967 1035 2.281484 TTTGCCACGCCTGACCTC 60.281 61.111 0.00 0.00 0.00 3.85
1037 1105 3.770040 CTCGCCATCACCCGACCA 61.770 66.667 0.00 0.00 0.00 4.02
1038 1106 4.077184 TCGCCATCACCCGACCAC 62.077 66.667 0.00 0.00 0.00 4.16
1039 1107 4.386951 CGCCATCACCCGACCACA 62.387 66.667 0.00 0.00 0.00 4.17
1040 1108 2.436646 GCCATCACCCGACCACAG 60.437 66.667 0.00 0.00 0.00 3.66
1041 1109 2.954684 GCCATCACCCGACCACAGA 61.955 63.158 0.00 0.00 0.00 3.41
1042 1110 1.219124 CCATCACCCGACCACAGAG 59.781 63.158 0.00 0.00 0.00 3.35
1069 1137 2.430248 TATTCCCCCGGAAAGAAAGC 57.570 50.000 0.73 0.00 45.41 3.51
1072 1140 1.074951 CCCCCGGAAAGAAAGCAGT 59.925 57.895 0.73 0.00 0.00 4.40
1083 1151 1.347817 GAAAGCAGTGACGGCGAGAG 61.348 60.000 16.62 0.00 36.08 3.20
1084 1152 2.771763 AAAGCAGTGACGGCGAGAGG 62.772 60.000 16.62 0.00 36.08 3.69
1085 1153 4.803426 GCAGTGACGGCGAGAGGG 62.803 72.222 16.62 0.50 0.00 4.30
1086 1154 4.803426 CAGTGACGGCGAGAGGGC 62.803 72.222 16.62 0.00 37.98 5.19
1109 1183 2.025418 GCGAAGAAAGTCCGGCGAA 61.025 57.895 9.30 0.00 0.00 4.70
1503 1581 9.106977 GAGATCCCCTTTTACTAGATTAATCCT 57.893 37.037 11.92 2.68 0.00 3.24
1520 1598 7.893124 TTAATCCTTACTGTAGATCGGTTCT 57.107 36.000 0.00 0.00 36.91 3.01
1572 1719 3.068560 TGCTGGGTTACATTGTACGAAC 58.931 45.455 0.00 0.00 0.00 3.95
1573 1720 3.244284 TGCTGGGTTACATTGTACGAACT 60.244 43.478 0.00 0.00 0.00 3.01
1651 1950 8.197439 CCTTTCTAAGATTCCACAAACAAAACT 58.803 33.333 0.00 0.00 0.00 2.66
1662 1961 8.749026 TCCACAAACAAAACTTATACCAACTA 57.251 30.769 0.00 0.00 0.00 2.24
1663 1962 8.842280 TCCACAAACAAAACTTATACCAACTAG 58.158 33.333 0.00 0.00 0.00 2.57
1664 1963 8.626526 CCACAAACAAAACTTATACCAACTAGT 58.373 33.333 0.00 0.00 0.00 2.57
1716 2015 2.224670 TGGGCGAAAAAGTATCACCTGT 60.225 45.455 0.00 0.00 0.00 4.00
1849 2149 5.180271 ACTTAATTTACGCGGAAGATTGGA 58.820 37.500 12.47 0.00 0.00 3.53
1864 2164 6.239743 GGAAGATTGGACTTATTAGGCTAGCT 60.240 42.308 15.72 3.22 0.00 3.32
1866 2166 7.142995 AGATTGGACTTATTAGGCTAGCTTT 57.857 36.000 15.72 6.10 0.00 3.51
1921 2259 8.088365 GTGGAAATTTACTAGTGCCAATCTTTT 58.912 33.333 5.39 0.00 0.00 2.27
2163 2501 1.002134 CCTGGGAGTTGCCATCGTT 60.002 57.895 0.00 0.00 38.95 3.85
2172 2510 0.881118 TTGCCATCGTTTGCCTTCTC 59.119 50.000 0.00 0.00 0.00 2.87
2283 2621 4.184629 CTCTTCTTGGGGTTTATCTCGTG 58.815 47.826 0.00 0.00 0.00 4.35
2285 2623 2.262637 TCTTGGGGTTTATCTCGTGGT 58.737 47.619 0.00 0.00 0.00 4.16
2326 2664 0.178921 TCTGACTCTCACCCCTGCTT 60.179 55.000 0.00 0.00 0.00 3.91
2373 2711 3.084039 GGTCATTCTCATTCTTGCACCA 58.916 45.455 0.00 0.00 0.00 4.17
2454 2798 1.201998 GCTGCTGACAATGATCACACG 60.202 52.381 0.00 0.00 0.00 4.49
2490 2834 3.181429 TGCCTTCTTCCTCTGAACCAAAT 60.181 43.478 0.00 0.00 0.00 2.32
2502 2846 4.987912 TCTGAACCAAATTTCGGCAAAATC 59.012 37.500 6.58 1.10 36.54 2.17
2503 2847 4.697514 TGAACCAAATTTCGGCAAAATCA 58.302 34.783 6.58 2.97 36.54 2.57
2697 3041 4.031426 GTCACCGTTCTTAACAATCTAGCG 59.969 45.833 0.00 0.00 0.00 4.26
2868 3212 6.495872 ACAAGGTGTACTTTCATCTACCTGTA 59.504 38.462 0.00 0.00 38.47 2.74
2993 3337 5.291905 ACATAGCTAGGTAACCAATGGAC 57.708 43.478 9.76 0.00 37.17 4.02
3025 3369 5.918011 TCAAACAAAAATATTCGTCTGCCAC 59.082 36.000 0.00 0.00 0.00 5.01
3032 3376 2.898729 ATTCGTCTGCCACTATCCTG 57.101 50.000 0.00 0.00 0.00 3.86
3124 3473 0.094730 GAACACGTTATGTCTGCCGC 59.905 55.000 0.00 0.00 42.31 6.53
3140 3489 0.944386 CCGCGGGTTATGGATCAAAG 59.056 55.000 20.10 0.00 0.00 2.77
3141 3490 0.307760 CGCGGGTTATGGATCAAAGC 59.692 55.000 0.00 0.00 0.00 3.51
3231 3584 9.416284 GTTGACAATATTTCTCCCCCTTATTTA 57.584 33.333 0.00 0.00 0.00 1.40
3282 3635 1.002134 CCCAGCCCCAACTGTGTAG 60.002 63.158 0.00 0.00 35.83 2.74
3285 3638 0.036010 CAGCCCCAACTGTGTAGGAG 60.036 60.000 0.00 0.00 32.78 3.69
3354 3707 5.388682 CGGTTGAATGCATTTGTTCACATTC 60.389 40.000 14.33 7.45 45.47 2.67
3359 3712 8.883954 TGAATGCATTTGTTCACATTCTAAAA 57.116 26.923 14.33 0.00 45.47 1.52
3486 3840 6.546403 TGATAATCAACTACCTAGTCTTCGCT 59.454 38.462 0.00 0.00 34.99 4.93
3630 3984 1.985473 ACAACTTCATCTTGCTGGCA 58.015 45.000 0.00 0.00 0.00 4.92
3846 4200 2.806237 GTGAGGATCCGACCGGTC 59.194 66.667 25.28 25.28 36.47 4.79
3854 4208 2.438411 GATCCGACCGGTCTATCAGAT 58.562 52.381 30.92 22.34 36.47 2.90
3890 4244 3.393970 CTCGAGCCAGCCCAGGAA 61.394 66.667 0.00 0.00 0.00 3.36
3979 4333 8.667987 TTGAAATATGAGCACGTGTTTATTTC 57.332 30.769 26.38 26.38 36.93 2.17
4149 4743 0.846693 AGCATGAACCCCAGGATACC 59.153 55.000 0.00 0.00 37.17 2.73
4153 4747 3.181434 GCATGAACCCCAGGATACCAATA 60.181 47.826 0.00 0.00 37.17 1.90
4194 4788 8.564574 ACACGTTTGTATGTGATATCAGTTTTT 58.435 29.630 5.42 0.00 42.72 1.94
4244 4838 3.455737 CCAACCAGGTTGAATGGGT 57.544 52.632 31.04 0.00 45.28 4.51
4412 5012 2.775911 ATCACTGGATGTCACACTGG 57.224 50.000 0.00 0.00 30.86 4.00
4417 5017 3.583383 GATGTCACACTGGCAGCC 58.417 61.111 15.89 3.66 34.38 4.85
4418 5018 1.302752 GATGTCACACTGGCAGCCA 60.303 57.895 15.23 15.23 34.38 4.75
4460 5061 3.003793 GGTTTGCTCCTTGACTTCAACTC 59.996 47.826 0.00 0.00 0.00 3.01
4515 5116 2.162338 TTTGCTTGCATGCTGGAGGC 62.162 55.000 23.31 11.40 41.02 4.70
4548 5149 4.099573 GGACGATGATAAGAAGAGGTTCCA 59.900 45.833 0.00 0.00 32.48 3.53
4550 5151 6.240549 ACGATGATAAGAAGAGGTTCCAAT 57.759 37.500 0.00 0.00 32.48 3.16
4608 5209 2.369860 TCTGCAGGTGATCACAGAACTT 59.630 45.455 26.47 2.69 36.27 2.66
4611 5212 3.324846 TGCAGGTGATCACAGAACTTACT 59.675 43.478 26.47 9.42 0.00 2.24
4612 5213 4.526650 TGCAGGTGATCACAGAACTTACTA 59.473 41.667 26.47 0.00 0.00 1.82
4613 5214 4.865365 GCAGGTGATCACAGAACTTACTAC 59.135 45.833 26.47 5.30 0.00 2.73
4614 5215 5.336849 GCAGGTGATCACAGAACTTACTACT 60.337 44.000 26.47 7.51 0.00 2.57
4615 5216 6.326375 CAGGTGATCACAGAACTTACTACTC 58.674 44.000 26.47 4.67 0.00 2.59
4616 5217 6.151985 CAGGTGATCACAGAACTTACTACTCT 59.848 42.308 26.47 6.90 0.00 3.24
4617 5218 6.376018 AGGTGATCACAGAACTTACTACTCTC 59.624 42.308 26.47 3.67 0.00 3.20
4618 5219 6.376018 GGTGATCACAGAACTTACTACTCTCT 59.624 42.308 26.47 0.00 0.00 3.10
4619 5220 7.094118 GGTGATCACAGAACTTACTACTCTCTT 60.094 40.741 26.47 0.00 0.00 2.85
4620 5221 7.966204 GTGATCACAGAACTTACTACTCTCTTC 59.034 40.741 21.07 0.00 0.00 2.87
4621 5222 6.483385 TCACAGAACTTACTACTCTCTTCG 57.517 41.667 0.00 0.00 0.00 3.79
4622 5223 5.996513 TCACAGAACTTACTACTCTCTTCGT 59.003 40.000 0.00 0.00 0.00 3.85
4623 5224 6.485984 TCACAGAACTTACTACTCTCTTCGTT 59.514 38.462 0.00 0.00 0.00 3.85
4624 5225 6.797995 CACAGAACTTACTACTCTCTTCGTTC 59.202 42.308 0.00 0.00 0.00 3.95
4625 5226 6.072563 ACAGAACTTACTACTCTCTTCGTTCC 60.073 42.308 0.00 0.00 32.24 3.62
4626 5227 6.149807 CAGAACTTACTACTCTCTTCGTTCCT 59.850 42.308 0.00 0.00 32.24 3.36
4627 5228 7.333921 CAGAACTTACTACTCTCTTCGTTCCTA 59.666 40.741 0.00 0.00 32.24 2.94
4628 5229 7.882271 AGAACTTACTACTCTCTTCGTTCCTAA 59.118 37.037 0.00 0.00 32.24 2.69
4629 5230 7.992754 ACTTACTACTCTCTTCGTTCCTAAA 57.007 36.000 0.00 0.00 0.00 1.85
4630 5231 8.578448 ACTTACTACTCTCTTCGTTCCTAAAT 57.422 34.615 0.00 0.00 0.00 1.40
4631 5232 9.678260 ACTTACTACTCTCTTCGTTCCTAAATA 57.322 33.333 0.00 0.00 0.00 1.40
4635 5236 9.804758 ACTACTCTCTTCGTTCCTAAATATTTG 57.195 33.333 11.05 1.40 0.00 2.32
4636 5237 9.804758 CTACTCTCTTCGTTCCTAAATATTTGT 57.195 33.333 11.05 0.00 0.00 2.83
4638 5239 9.152595 ACTCTCTTCGTTCCTAAATATTTGTTC 57.847 33.333 11.05 0.00 0.00 3.18
4639 5240 9.372369 CTCTCTTCGTTCCTAAATATTTGTTCT 57.628 33.333 11.05 0.00 0.00 3.01
4640 5241 9.720769 TCTCTTCGTTCCTAAATATTTGTTCTT 57.279 29.630 11.05 0.00 0.00 2.52
4641 5242 9.974750 CTCTTCGTTCCTAAATATTTGTTCTTC 57.025 33.333 11.05 0.00 0.00 2.87
4642 5243 9.720769 TCTTCGTTCCTAAATATTTGTTCTTCT 57.279 29.630 11.05 0.00 0.00 2.85
4658 5259 8.561738 TTGTTCTTCTAGAGTTTTCAACAAGT 57.438 30.769 0.00 0.00 30.89 3.16
4659 5260 7.974675 TGTTCTTCTAGAGTTTTCAACAAGTG 58.025 34.615 0.00 0.00 0.00 3.16
4660 5261 7.822334 TGTTCTTCTAGAGTTTTCAACAAGTGA 59.178 33.333 0.00 0.00 0.00 3.41
4661 5262 7.772332 TCTTCTAGAGTTTTCAACAAGTGAC 57.228 36.000 0.00 0.00 35.39 3.67
4662 5263 7.556844 TCTTCTAGAGTTTTCAACAAGTGACT 58.443 34.615 0.00 0.00 35.39 3.41
4663 5264 8.692710 TCTTCTAGAGTTTTCAACAAGTGACTA 58.307 33.333 0.00 0.00 35.39 2.59
4664 5265 9.482627 CTTCTAGAGTTTTCAACAAGTGACTAT 57.517 33.333 0.00 0.00 35.39 2.12
4669 5270 9.355215 AGAGTTTTCAACAAGTGACTATATACG 57.645 33.333 0.00 0.00 35.39 3.06
4670 5271 9.350357 GAGTTTTCAACAAGTGACTATATACGA 57.650 33.333 0.00 0.00 35.39 3.43
4671 5272 9.701098 AGTTTTCAACAAGTGACTATATACGAA 57.299 29.630 0.00 0.00 35.39 3.85
4672 5273 9.953825 GTTTTCAACAAGTGACTATATACGAAG 57.046 33.333 0.00 0.00 35.39 3.79
4673 5274 7.751047 TTCAACAAGTGACTATATACGAAGC 57.249 36.000 0.00 0.00 35.39 3.86
4674 5275 6.859017 TCAACAAGTGACTATATACGAAGCA 58.141 36.000 0.00 0.00 0.00 3.91
4675 5276 7.317390 TCAACAAGTGACTATATACGAAGCAA 58.683 34.615 0.00 0.00 0.00 3.91
4676 5277 7.815549 TCAACAAGTGACTATATACGAAGCAAA 59.184 33.333 0.00 0.00 0.00 3.68
4677 5278 8.440059 CAACAAGTGACTATATACGAAGCAAAA 58.560 33.333 0.00 0.00 0.00 2.44
4678 5279 8.718102 ACAAGTGACTATATACGAAGCAAAAT 57.282 30.769 0.00 0.00 0.00 1.82
4679 5280 8.604035 ACAAGTGACTATATACGAAGCAAAATG 58.396 33.333 0.00 0.00 0.00 2.32
4680 5281 8.817100 CAAGTGACTATATACGAAGCAAAATGA 58.183 33.333 0.00 0.00 0.00 2.57
4681 5282 8.581057 AGTGACTATATACGAAGCAAAATGAG 57.419 34.615 0.00 0.00 0.00 2.90
4682 5283 8.198109 AGTGACTATATACGAAGCAAAATGAGT 58.802 33.333 0.00 0.00 0.00 3.41
4683 5284 8.269424 GTGACTATATACGAAGCAAAATGAGTG 58.731 37.037 0.00 0.00 0.00 3.51
4684 5285 8.194769 TGACTATATACGAAGCAAAATGAGTGA 58.805 33.333 0.00 0.00 0.00 3.41
4685 5286 8.942338 ACTATATACGAAGCAAAATGAGTGAA 57.058 30.769 0.00 0.00 0.00 3.18
4686 5287 9.547753 ACTATATACGAAGCAAAATGAGTGAAT 57.452 29.630 0.00 0.00 0.00 2.57
4687 5288 9.803130 CTATATACGAAGCAAAATGAGTGAATG 57.197 33.333 0.00 0.00 0.00 2.67
4688 5289 4.836125 ACGAAGCAAAATGAGTGAATGT 57.164 36.364 0.00 0.00 0.00 2.71
4689 5290 5.940192 ACGAAGCAAAATGAGTGAATGTA 57.060 34.783 0.00 0.00 0.00 2.29
4690 5291 5.689819 ACGAAGCAAAATGAGTGAATGTAC 58.310 37.500 0.00 0.00 0.00 2.90
4691 5292 5.238432 ACGAAGCAAAATGAGTGAATGTACA 59.762 36.000 0.00 0.00 0.00 2.90
4692 5293 5.565259 CGAAGCAAAATGAGTGAATGTACAC 59.435 40.000 0.00 0.00 40.60 2.90
4725 5326 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
4727 5328 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
4728 5329 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
4729 5330 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
4730 5331 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
4731 5332 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
4732 5333 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
4733 5334 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
4734 5335 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
4735 5336 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
4736 5337 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
4737 5338 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
4738 5339 5.104693 TCCGTATGTGGTAGTCCATTTGAAT 60.105 40.000 0.00 0.00 46.20 2.57
4739 5340 5.236478 CCGTATGTGGTAGTCCATTTGAATC 59.764 44.000 0.00 0.00 46.20 2.52
4740 5341 6.049149 CGTATGTGGTAGTCCATTTGAATCT 58.951 40.000 0.00 0.00 46.20 2.40
4741 5342 6.201044 CGTATGTGGTAGTCCATTTGAATCTC 59.799 42.308 0.00 0.00 46.20 2.75
4742 5343 5.762179 TGTGGTAGTCCATTTGAATCTCT 57.238 39.130 0.00 0.00 46.20 3.10
4743 5344 6.867519 TGTGGTAGTCCATTTGAATCTCTA 57.132 37.500 0.00 0.00 46.20 2.43
4744 5345 7.252612 TGTGGTAGTCCATTTGAATCTCTAA 57.747 36.000 0.00 0.00 46.20 2.10
4745 5346 7.685481 TGTGGTAGTCCATTTGAATCTCTAAA 58.315 34.615 0.00 0.00 46.20 1.85
4746 5347 8.160765 TGTGGTAGTCCATTTGAATCTCTAAAA 58.839 33.333 0.00 0.00 46.20 1.52
4747 5348 8.669243 GTGGTAGTCCATTTGAATCTCTAAAAG 58.331 37.037 0.00 0.00 46.20 2.27
4748 5349 8.602424 TGGTAGTCCATTTGAATCTCTAAAAGA 58.398 33.333 0.00 0.00 39.03 2.52
4749 5350 8.884726 GGTAGTCCATTTGAATCTCTAAAAGAC 58.115 37.037 0.00 0.00 36.65 3.01
4750 5351 9.436957 GTAGTCCATTTGAATCTCTAAAAGACA 57.563 33.333 0.00 0.00 36.65 3.41
4751 5352 8.924511 AGTCCATTTGAATCTCTAAAAGACAA 57.075 30.769 0.00 0.00 36.65 3.18
4752 5353 9.354673 AGTCCATTTGAATCTCTAAAAGACAAA 57.645 29.630 0.00 0.00 36.65 2.83
4766 5367 9.947433 TCTAAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 37.29 4.69
4768 5369 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
4769 5370 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4770 5371 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4771 5372 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4783 5384 6.008960 GGAACGGAGGGAGTAGAATCTAATA 58.991 44.000 0.00 0.00 0.00 0.98
4812 5413 5.987347 AGAAATTTGATTTTGGCTGTCAGTG 59.013 36.000 0.00 0.00 31.47 3.66
4832 5433 1.021390 GCGATGAAGAGTGGTGGTGG 61.021 60.000 0.00 0.00 0.00 4.61
4842 5443 1.002257 TGGTGGTGGTGCATAGCTG 60.002 57.895 0.00 0.00 0.00 4.24
4906 5507 7.920151 TGTGTACAATCTGGAAATTTCAACAAG 59.080 33.333 19.49 10.81 0.00 3.16
4911 5512 8.090214 ACAATCTGGAAATTTCAACAAGGTATG 58.910 33.333 19.49 11.78 0.00 2.39
4934 5535 2.777832 GCATGGCCAAAACCCATAAA 57.222 45.000 10.96 0.00 41.02 1.40
4938 5539 3.710209 TGGCCAAAACCCATAAATTGG 57.290 42.857 0.61 0.00 46.00 3.16
5011 5612 2.604914 GTGTGTATCTTGATGCACTCCG 59.395 50.000 24.39 0.00 37.89 4.63
5028 5629 1.731709 TCCGTCGCAATGTTCAATCTG 59.268 47.619 0.00 0.00 0.00 2.90
5076 5677 1.063070 TGCCAAGTTACCCCTGACCA 61.063 55.000 0.00 0.00 0.00 4.02
5084 5685 0.616371 TACCCCTGACCATGGTTTCG 59.384 55.000 20.85 10.26 33.55 3.46
5104 5705 3.807622 TCGCTAGAAACCTGTGAAAACTG 59.192 43.478 0.00 0.00 0.00 3.16
5112 5713 3.275999 ACCTGTGAAAACTGGTGTACAC 58.724 45.455 18.01 18.01 39.88 2.90
5131 5732 8.564574 GTGTACACTTTCATTATTTTGACTCCA 58.435 33.333 18.92 0.00 0.00 3.86
5164 5765 7.172019 AGTGAAAATTGGCTAGCTTTCAAATTG 59.828 33.333 23.63 0.00 38.97 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.047280 GACGCCGTCCACATTGCA 61.047 61.111 5.81 0.00 0.00 4.08
1 2 4.147322 CGACGCCGTCCACATTGC 62.147 66.667 12.26 0.00 0.00 3.56
2 3 3.487202 CCGACGCCGTCCACATTG 61.487 66.667 12.26 0.00 0.00 2.82
3 4 3.642778 CTCCGACGCCGTCCACATT 62.643 63.158 12.26 0.00 0.00 2.71
4 5 4.129737 CTCCGACGCCGTCCACAT 62.130 66.667 12.26 0.00 0.00 3.21
13 14 2.672908 TATAAGCCGTGCTCCGACGC 62.673 60.000 0.00 0.00 38.25 5.19
14 15 0.039437 ATATAAGCCGTGCTCCGACG 60.039 55.000 0.00 0.00 38.25 5.12
15 16 2.864968 CTATATAAGCCGTGCTCCGAC 58.135 52.381 0.00 0.00 38.25 4.79
16 17 1.201647 GCTATATAAGCCGTGCTCCGA 59.798 52.381 0.00 0.00 46.25 4.55
17 18 1.630148 GCTATATAAGCCGTGCTCCG 58.370 55.000 0.00 0.00 46.25 4.63
27 28 2.166664 GGTCTGGCCGAGGCTATATAAG 59.833 54.545 14.33 3.23 41.60 1.73
28 29 2.176889 GGTCTGGCCGAGGCTATATAA 58.823 52.381 14.33 0.00 41.60 0.98
29 30 1.076513 TGGTCTGGCCGAGGCTATATA 59.923 52.381 14.33 0.00 41.21 0.86
30 31 0.178932 TGGTCTGGCCGAGGCTATAT 60.179 55.000 14.33 0.00 41.21 0.86
31 32 0.178932 ATGGTCTGGCCGAGGCTATA 60.179 55.000 14.33 0.00 41.21 1.31
32 33 1.460305 ATGGTCTGGCCGAGGCTAT 60.460 57.895 14.33 0.00 41.21 2.97
33 34 2.041922 ATGGTCTGGCCGAGGCTA 60.042 61.111 14.33 7.07 41.21 3.93
34 35 3.790437 CATGGTCTGGCCGAGGCT 61.790 66.667 14.33 0.00 41.21 4.58
37 38 3.664025 TTCGCATGGTCTGGCCGAG 62.664 63.158 0.00 0.00 41.21 4.63
38 39 3.700970 TTCGCATGGTCTGGCCGA 61.701 61.111 0.00 0.00 41.21 5.54
39 40 3.499737 GTTCGCATGGTCTGGCCG 61.500 66.667 0.00 0.00 41.21 6.13
40 41 3.499737 CGTTCGCATGGTCTGGCC 61.500 66.667 0.00 0.00 37.90 5.36
41 42 3.499737 CCGTTCGCATGGTCTGGC 61.500 66.667 0.00 0.00 0.00 4.85
42 43 2.100631 GTCCGTTCGCATGGTCTGG 61.101 63.158 0.00 0.00 0.00 3.86
43 44 2.444624 CGTCCGTTCGCATGGTCTG 61.445 63.158 0.00 0.00 0.00 3.51
44 45 2.126071 CGTCCGTTCGCATGGTCT 60.126 61.111 0.00 0.00 0.00 3.85
45 46 3.186047 CCGTCCGTTCGCATGGTC 61.186 66.667 0.00 0.00 0.00 4.02
46 47 3.998672 ACCGTCCGTTCGCATGGT 61.999 61.111 0.00 0.00 0.00 3.55
47 48 3.487202 CACCGTCCGTTCGCATGG 61.487 66.667 0.00 0.00 0.00 3.66
48 49 2.431771 TCACCGTCCGTTCGCATG 60.432 61.111 0.00 0.00 0.00 4.06
49 50 2.126071 CTCACCGTCCGTTCGCAT 60.126 61.111 0.00 0.00 0.00 4.73
61 62 2.262471 CTGCATTGAAGCGGCTCACC 62.262 60.000 1.45 0.00 37.31 4.02
62 63 1.136147 CTGCATTGAAGCGGCTCAC 59.864 57.895 1.45 1.26 37.31 3.51
63 64 3.582148 CTGCATTGAAGCGGCTCA 58.418 55.556 1.45 0.02 37.31 4.26
67 68 0.317603 GCTATGCTGCATTGAAGCGG 60.318 55.000 24.55 6.02 43.88 5.52
68 69 0.379316 TGCTATGCTGCATTGAAGCG 59.621 50.000 24.55 7.55 43.88 4.68
69 70 2.121116 CTGCTATGCTGCATTGAAGC 57.879 50.000 24.55 23.55 42.48 3.86
78 79 1.015109 CAACTCTGGCTGCTATGCTG 58.985 55.000 0.00 0.00 0.00 4.41
79 80 0.907486 TCAACTCTGGCTGCTATGCT 59.093 50.000 0.00 0.00 0.00 3.79
80 81 1.964552 ATCAACTCTGGCTGCTATGC 58.035 50.000 0.00 0.00 0.00 3.14
81 82 2.877168 GGAATCAACTCTGGCTGCTATG 59.123 50.000 0.00 0.00 0.00 2.23
82 83 2.776536 AGGAATCAACTCTGGCTGCTAT 59.223 45.455 0.00 0.00 0.00 2.97
83 84 2.191400 AGGAATCAACTCTGGCTGCTA 58.809 47.619 0.00 0.00 0.00 3.49
84 85 0.990374 AGGAATCAACTCTGGCTGCT 59.010 50.000 0.00 0.00 0.00 4.24
85 86 1.831580 AAGGAATCAACTCTGGCTGC 58.168 50.000 0.00 0.00 0.00 5.25
86 87 3.198635 TCCTAAGGAATCAACTCTGGCTG 59.801 47.826 0.00 0.00 0.00 4.85
87 88 3.454858 TCCTAAGGAATCAACTCTGGCT 58.545 45.455 0.00 0.00 0.00 4.75
88 89 3.914426 TCCTAAGGAATCAACTCTGGC 57.086 47.619 0.00 0.00 0.00 4.85
89 90 4.080638 AGCTTCCTAAGGAATCAACTCTGG 60.081 45.833 0.00 0.00 41.23 3.86
90 91 4.874966 CAGCTTCCTAAGGAATCAACTCTG 59.125 45.833 0.00 0.00 41.23 3.35
91 92 4.625083 GCAGCTTCCTAAGGAATCAACTCT 60.625 45.833 0.00 0.00 41.23 3.24
92 93 3.625313 GCAGCTTCCTAAGGAATCAACTC 59.375 47.826 0.00 0.00 41.23 3.01
93 94 3.615155 GCAGCTTCCTAAGGAATCAACT 58.385 45.455 0.00 0.00 41.23 3.16
94 95 2.352960 CGCAGCTTCCTAAGGAATCAAC 59.647 50.000 0.00 0.00 41.23 3.18
95 96 2.027192 ACGCAGCTTCCTAAGGAATCAA 60.027 45.455 0.00 0.00 41.23 2.57
96 97 1.555075 ACGCAGCTTCCTAAGGAATCA 59.445 47.619 0.00 0.00 41.23 2.57
97 98 2.159028 AGACGCAGCTTCCTAAGGAATC 60.159 50.000 0.00 0.00 41.23 2.52
98 99 1.834263 AGACGCAGCTTCCTAAGGAAT 59.166 47.619 0.00 0.00 41.23 3.01
99 100 1.066858 CAGACGCAGCTTCCTAAGGAA 60.067 52.381 0.00 0.00 39.66 3.36
100 101 0.532573 CAGACGCAGCTTCCTAAGGA 59.467 55.000 0.00 0.00 0.00 3.36
101 102 1.086634 GCAGACGCAGCTTCCTAAGG 61.087 60.000 0.00 0.00 38.36 2.69
102 103 0.390340 TGCAGACGCAGCTTCCTAAG 60.390 55.000 0.00 0.00 45.36 2.18
103 104 1.671166 TGCAGACGCAGCTTCCTAA 59.329 52.632 0.00 0.00 45.36 2.69
104 105 3.376546 TGCAGACGCAGCTTCCTA 58.623 55.556 0.00 0.00 45.36 2.94
113 114 2.099062 CCGCTTCAATGCAGACGC 59.901 61.111 0.00 0.00 39.24 5.19
114 115 2.099062 GCCGCTTCAATGCAGACG 59.901 61.111 0.00 0.00 0.00 4.18
115 116 2.099062 CGCCGCTTCAATGCAGAC 59.901 61.111 0.00 0.00 0.00 3.51
116 117 2.047370 TCGCCGCTTCAATGCAGA 60.047 55.556 0.00 0.00 0.00 4.26
117 118 2.099062 GTCGCCGCTTCAATGCAG 59.901 61.111 0.00 0.00 0.00 4.41
118 119 2.358615 AGTCGCCGCTTCAATGCA 60.359 55.556 0.00 0.00 0.00 3.96
119 120 2.401195 GAGTCGCCGCTTCAATGC 59.599 61.111 0.00 0.00 0.00 3.56
120 121 2.464459 GGGAGTCGCCGCTTCAATG 61.464 63.158 0.00 0.00 37.63 2.82
121 122 2.125106 GGGAGTCGCCGCTTCAAT 60.125 61.111 0.00 0.00 37.63 2.57
122 123 4.388499 GGGGAGTCGCCGCTTCAA 62.388 66.667 10.92 0.00 45.70 2.69
129 130 3.462678 GACCTGAGGGGAGTCGCC 61.463 72.222 18.33 18.33 38.76 5.54
130 131 3.827898 CGACCTGAGGGGAGTCGC 61.828 72.222 2.38 0.00 45.72 5.19
132 133 2.022240 GATGCGACCTGAGGGGAGTC 62.022 65.000 2.38 0.00 38.76 3.36
133 134 2.039624 ATGCGACCTGAGGGGAGT 59.960 61.111 2.38 0.00 38.76 3.85
134 135 0.468214 TAGATGCGACCTGAGGGGAG 60.468 60.000 2.38 0.00 38.76 4.30
135 136 0.188587 ATAGATGCGACCTGAGGGGA 59.811 55.000 2.38 0.00 38.76 4.81
136 137 1.051812 AATAGATGCGACCTGAGGGG 58.948 55.000 2.38 0.00 41.89 4.79
137 138 2.353208 GCTAATAGATGCGACCTGAGGG 60.353 54.545 2.38 0.00 38.88 4.30
138 139 2.953020 GCTAATAGATGCGACCTGAGG 58.047 52.381 0.00 0.00 0.00 3.86
147 148 2.391389 GGGCGGCGCTAATAGATGC 61.391 63.158 32.30 11.24 0.00 3.91
148 149 0.737715 GAGGGCGGCGCTAATAGATG 60.738 60.000 32.30 0.00 0.00 2.90
149 150 1.592223 GAGGGCGGCGCTAATAGAT 59.408 57.895 32.30 9.63 0.00 1.98
150 151 2.571216 GGAGGGCGGCGCTAATAGA 61.571 63.158 32.30 0.00 0.00 1.98
151 152 2.048127 GGAGGGCGGCGCTAATAG 60.048 66.667 32.30 0.00 0.00 1.73
152 153 3.622826 GGGAGGGCGGCGCTAATA 61.623 66.667 32.30 0.00 0.00 0.98
188 189 1.095228 CCAGCGGCCGACATTAATGT 61.095 55.000 33.48 20.93 45.16 2.71
213 214 3.818787 GCAGCAATGCCGGACCAG 61.819 66.667 5.05 0.00 0.00 4.00
247 248 3.325293 TCTGTCTCTCATGTGCTTTCC 57.675 47.619 0.00 0.00 0.00 3.13
248 249 3.622163 CCATCTGTCTCTCATGTGCTTTC 59.378 47.826 0.00 0.00 0.00 2.62
254 255 2.238144 CAACCCCATCTGTCTCTCATGT 59.762 50.000 0.00 0.00 0.00 3.21
256 257 1.211457 GCAACCCCATCTGTCTCTCAT 59.789 52.381 0.00 0.00 0.00 2.90
257 258 0.615331 GCAACCCCATCTGTCTCTCA 59.385 55.000 0.00 0.00 0.00 3.27
265 266 0.038744 CTCACCAAGCAACCCCATCT 59.961 55.000 0.00 0.00 0.00 2.90
283 284 1.592223 GCGACTGACTAACCTGGCT 59.408 57.895 0.00 0.00 0.00 4.75
289 290 1.063951 CACGTCCGCGACTGACTAAC 61.064 60.000 8.23 0.00 42.00 2.34
314 315 1.988834 GCTTTATGGTTGTCCGGGCG 61.989 60.000 0.00 0.00 36.30 6.13
316 317 0.034477 AGGCTTTATGGTTGTCCGGG 60.034 55.000 0.00 0.00 36.30 5.73
323 324 6.485171 AGATAAACTGTGAGGCTTTATGGTT 58.515 36.000 0.00 0.00 0.00 3.67
364 365 4.506758 GCTCAATGGTTATGGCATGTTTT 58.493 39.130 10.98 0.00 0.00 2.43
369 370 1.133823 TCCGCTCAATGGTTATGGCAT 60.134 47.619 4.88 4.88 0.00 4.40
370 371 0.254462 TCCGCTCAATGGTTATGGCA 59.746 50.000 0.00 0.00 0.00 4.92
374 375 0.828022 TCGGTCCGCTCAATGGTTAT 59.172 50.000 6.34 0.00 0.00 1.89
375 376 0.828022 ATCGGTCCGCTCAATGGTTA 59.172 50.000 6.34 0.00 0.00 2.85
376 377 0.828022 TATCGGTCCGCTCAATGGTT 59.172 50.000 6.34 0.00 0.00 3.67
400 401 6.861055 GGACGTATTTTGTCATTCAACACATT 59.139 34.615 0.00 0.00 38.10 2.71
401 402 6.378582 GGACGTATTTTGTCATTCAACACAT 58.621 36.000 0.00 0.00 38.10 3.21
402 403 5.559225 CGGACGTATTTTGTCATTCAACACA 60.559 40.000 0.00 0.00 38.10 3.72
405 406 4.152759 TCCGGACGTATTTTGTCATTCAAC 59.847 41.667 0.00 0.00 38.10 3.18
409 410 3.004862 GGTCCGGACGTATTTTGTCATT 58.995 45.455 27.68 0.00 38.10 2.57
419 420 4.758251 TCGAGCGGTCCGGACGTA 62.758 66.667 27.68 6.77 0.00 3.57
421 422 4.609247 GATCGAGCGGTCCGGACG 62.609 72.222 27.68 22.43 0.00 4.79
430 431 4.514577 AACAGGCCGGATCGAGCG 62.515 66.667 10.86 0.00 0.00 5.03
433 434 4.812476 CGCAACAGGCCGGATCGA 62.812 66.667 10.86 0.00 40.31 3.59
442 443 1.714899 CCTAAATCGCCCGCAACAGG 61.715 60.000 0.00 0.00 0.00 4.00
443 444 1.714899 CCCTAAATCGCCCGCAACAG 61.715 60.000 0.00 0.00 0.00 3.16
444 445 1.747367 CCCTAAATCGCCCGCAACA 60.747 57.895 0.00 0.00 0.00 3.33
445 446 2.478033 CCCCTAAATCGCCCGCAAC 61.478 63.158 0.00 0.00 0.00 4.17
446 447 2.124487 CCCCTAAATCGCCCGCAA 60.124 61.111 0.00 0.00 0.00 4.85
447 448 4.868116 GCCCCTAAATCGCCCGCA 62.868 66.667 0.00 0.00 0.00 5.69
450 451 4.949098 CCGGCCCCTAAATCGCCC 62.949 72.222 0.00 0.00 39.66 6.13
452 453 4.868116 TGCCGGCCCCTAAATCGC 62.868 66.667 26.77 0.00 0.00 4.58
453 454 1.528309 AATGCCGGCCCCTAAATCG 60.528 57.895 26.77 0.00 0.00 3.34
454 455 1.463553 CCAATGCCGGCCCCTAAATC 61.464 60.000 26.77 0.00 0.00 2.17
455 456 1.457455 CCAATGCCGGCCCCTAAAT 60.457 57.895 26.77 6.39 0.00 1.40
456 457 2.043450 CCAATGCCGGCCCCTAAA 60.043 61.111 26.77 3.54 0.00 1.85
457 458 3.018193 TCCAATGCCGGCCCCTAA 61.018 61.111 26.77 4.49 0.00 2.69
458 459 3.488569 CTCCAATGCCGGCCCCTA 61.489 66.667 26.77 4.98 0.00 3.53
460 461 4.209866 ATCTCCAATGCCGGCCCC 62.210 66.667 26.77 0.00 0.00 5.80
461 462 2.908940 CATCTCCAATGCCGGCCC 60.909 66.667 26.77 0.00 0.00 5.80
462 463 3.599704 GCATCTCCAATGCCGGCC 61.600 66.667 26.77 6.44 39.01 6.13
467 468 0.971959 TGTTGGGGCATCTCCAATGC 60.972 55.000 1.03 1.40 44.87 3.56
468 469 1.784358 ATGTTGGGGCATCTCCAATG 58.216 50.000 1.03 0.00 44.87 2.82
469 470 2.555732 AATGTTGGGGCATCTCCAAT 57.444 45.000 1.03 0.00 44.87 3.16
470 471 3.565307 GATAATGTTGGGGCATCTCCAA 58.435 45.455 0.00 0.00 41.50 3.53
471 472 2.487086 CGATAATGTTGGGGCATCTCCA 60.487 50.000 0.00 0.00 36.21 3.86
472 473 2.154462 CGATAATGTTGGGGCATCTCC 58.846 52.381 0.00 0.00 0.00 3.71
473 474 3.126001 TCGATAATGTTGGGGCATCTC 57.874 47.619 0.00 0.00 0.00 2.75
474 475 3.415212 CATCGATAATGTTGGGGCATCT 58.585 45.455 0.00 0.00 0.00 2.90
475 476 2.489329 CCATCGATAATGTTGGGGCATC 59.511 50.000 0.00 0.00 33.13 3.91
476 477 2.158475 ACCATCGATAATGTTGGGGCAT 60.158 45.455 0.00 0.00 33.79 4.40
477 478 1.214175 ACCATCGATAATGTTGGGGCA 59.786 47.619 0.00 0.00 33.79 5.36
478 479 1.981256 ACCATCGATAATGTTGGGGC 58.019 50.000 0.00 0.00 33.79 5.80
479 480 3.550820 TGAACCATCGATAATGTTGGGG 58.449 45.455 10.72 2.84 33.79 4.96
480 481 5.299028 TCAATGAACCATCGATAATGTTGGG 59.701 40.000 10.72 3.50 33.79 4.12
481 482 6.375945 TCAATGAACCATCGATAATGTTGG 57.624 37.500 10.72 5.55 35.31 3.77
482 483 7.669438 GTTCAATGAACCATCGATAATGTTG 57.331 36.000 14.78 6.51 36.65 3.33
631 632 4.154015 TGTGCTGTTCAGATAACGGAAATG 59.846 41.667 3.84 0.00 32.72 2.32
636 637 1.394917 GCTGTGCTGTTCAGATAACGG 59.605 52.381 3.84 4.99 35.20 4.44
638 640 1.201965 GCGCTGTGCTGTTCAGATAAC 60.202 52.381 5.84 0.00 41.73 1.89
672 674 7.823310 CCATTGATGAGTAATCTATTCCTCCTG 59.177 40.741 0.00 0.00 36.15 3.86
674 676 7.821846 GTCCATTGATGAGTAATCTATTCCTCC 59.178 40.741 0.00 0.00 36.15 4.30
733 738 1.807573 CTTCTTCCTCTCGCGGTGC 60.808 63.158 6.13 0.00 0.00 5.01
734 739 0.456995 GTCTTCTTCCTCTCGCGGTG 60.457 60.000 6.13 0.00 0.00 4.94
735 740 1.884444 GTCTTCTTCCTCTCGCGGT 59.116 57.895 6.13 0.00 0.00 5.68
838 906 3.278574 CAAGGCCCGAAAATGTATCTGA 58.721 45.455 0.00 0.00 0.00 3.27
844 912 3.376546 GGCAAGGCCCGAAAATGT 58.623 55.556 0.00 0.00 44.06 2.71
943 1011 0.605319 CAGGCGTGGCAAAGGACTAA 60.605 55.000 0.00 0.00 28.31 2.24
1037 1105 2.774809 GGGGGAATAAAGCTCTCTCTGT 59.225 50.000 0.00 0.00 0.00 3.41
1038 1106 2.224161 CGGGGGAATAAAGCTCTCTCTG 60.224 54.545 0.00 0.00 0.00 3.35
1039 1107 2.043227 CGGGGGAATAAAGCTCTCTCT 58.957 52.381 0.00 0.00 0.00 3.10
1040 1108 1.070914 CCGGGGGAATAAAGCTCTCTC 59.929 57.143 0.00 0.00 0.00 3.20
1041 1109 1.132500 CCGGGGGAATAAAGCTCTCT 58.868 55.000 0.00 0.00 0.00 3.10
1042 1110 1.129058 TCCGGGGGAATAAAGCTCTC 58.871 55.000 0.00 0.00 0.00 3.20
1069 1137 4.803426 GCCCTCTCGCCGTCACTG 62.803 72.222 0.00 0.00 0.00 3.66
1084 1152 4.717313 ACTTTCTTCGCCCCCGCC 62.717 66.667 0.00 0.00 0.00 6.13
1085 1153 3.125573 GACTTTCTTCGCCCCCGC 61.126 66.667 0.00 0.00 0.00 6.13
1086 1154 2.436115 GGACTTTCTTCGCCCCCG 60.436 66.667 0.00 0.00 0.00 5.73
1087 1155 2.436115 CGGACTTTCTTCGCCCCC 60.436 66.667 0.00 0.00 0.00 5.40
1088 1156 2.436115 CCGGACTTTCTTCGCCCC 60.436 66.667 0.00 0.00 0.00 5.80
1089 1157 3.125573 GCCGGACTTTCTTCGCCC 61.126 66.667 5.05 0.00 0.00 6.13
1090 1158 3.488090 CGCCGGACTTTCTTCGCC 61.488 66.667 5.05 0.00 0.00 5.54
1503 1581 6.202379 CACGATCTAGAACCGATCTACAGTAA 59.798 42.308 20.20 0.00 39.71 2.24
1520 1598 5.827666 TGAAGCATACGATTTCACGATCTA 58.172 37.500 0.00 0.00 37.03 1.98
1572 1719 3.771577 ACGCCTTTCCCCTAATATCAG 57.228 47.619 0.00 0.00 0.00 2.90
1573 1720 5.556915 CATAACGCCTTTCCCCTAATATCA 58.443 41.667 0.00 0.00 0.00 2.15
1662 1961 5.293569 CGAGGATTAACTTTTCGCCAATACT 59.706 40.000 0.00 0.00 0.00 2.12
1663 1962 5.292589 TCGAGGATTAACTTTTCGCCAATAC 59.707 40.000 0.00 0.00 0.00 1.89
1664 1963 5.421277 TCGAGGATTAACTTTTCGCCAATA 58.579 37.500 0.00 0.00 0.00 1.90
1849 2149 9.521841 AGAAAAGAAAAAGCTAGCCTAATAAGT 57.478 29.630 12.13 0.00 0.00 2.24
1921 2259 0.546122 ATCTGCAATAGGGCCAACGA 59.454 50.000 6.18 0.00 0.00 3.85
2115 2453 0.240411 GCAAGAGGTTTGCAGCTGAG 59.760 55.000 20.43 0.00 44.34 3.35
2172 2510 0.370273 GCCTCACAAAGTACATCGCG 59.630 55.000 0.00 0.00 0.00 5.87
2283 2621 3.894547 ATCCAACGTCGTGGCCACC 62.895 63.158 29.95 15.94 38.68 4.61
2285 2623 2.047655 GATCCAACGTCGTGGCCA 60.048 61.111 0.00 0.00 38.68 5.36
2295 2633 4.150804 GTGAGAGTCAGAAAACGATCCAAC 59.849 45.833 0.00 0.00 0.00 3.77
2308 2646 0.689623 AAAGCAGGGGTGAGAGTCAG 59.310 55.000 0.00 0.00 0.00 3.51
2373 2711 2.684001 TCTTCACGGGTATCGCAAAT 57.316 45.000 0.00 0.00 43.89 2.32
2454 2798 3.425659 AGAAGGCAGAAGAAATGGTTCC 58.574 45.455 0.00 0.00 33.92 3.62
2490 2834 4.522405 TCCTCATCTTTGATTTTGCCGAAA 59.478 37.500 0.00 0.00 0.00 3.46
2502 2846 2.640184 TCTGCAGCATCCTCATCTTTG 58.360 47.619 9.47 0.00 0.00 2.77
2503 2847 3.579534 ATCTGCAGCATCCTCATCTTT 57.420 42.857 9.47 0.00 0.00 2.52
2697 3041 0.318445 CTGCTGCAGTTCCAACTTGC 60.318 55.000 21.21 0.00 37.08 4.01
2972 3316 5.552870 AGTCCATTGGTTACCTAGCTATG 57.447 43.478 2.07 0.00 37.27 2.23
2973 3317 6.576778 AAAGTCCATTGGTTACCTAGCTAT 57.423 37.500 2.07 0.00 0.00 2.97
3032 3376 8.041323 TGGACTGAAGGTTCTAACAATTCTATC 58.959 37.037 9.85 7.77 31.37 2.08
3124 3473 3.947834 AGAAAGCTTTGATCCATAACCCG 59.052 43.478 18.30 0.00 0.00 5.28
3165 3516 4.471025 TGTAATCTGAAGCTGGAATGGAGA 59.529 41.667 0.00 0.00 0.00 3.71
3221 3572 6.038271 CAGTCTGTCGGAAAATAAATAAGGGG 59.962 42.308 0.00 0.00 0.00 4.79
3231 3584 3.181454 ACTGTTCCAGTCTGTCGGAAAAT 60.181 43.478 0.00 0.00 41.21 1.82
3237 3590 2.509052 TTCACTGTTCCAGTCTGTCG 57.491 50.000 0.00 0.00 43.43 4.35
3307 3660 4.272991 GTGCATTGCATCCAAACAAGAAAA 59.727 37.500 15.49 0.00 41.91 2.29
3466 3820 4.336993 CAGAGCGAAGACTAGGTAGTTGAT 59.663 45.833 0.00 0.00 36.50 2.57
3486 3840 1.371183 CGTGGCTTTGAGACCCAGA 59.629 57.895 0.00 0.00 0.00 3.86
3532 3886 0.178068 AAATGGACGCCGTAGCAGAT 59.822 50.000 0.00 0.00 39.83 2.90
3580 3934 3.431486 CCAAACTGCTTTAGCCCAAACAA 60.431 43.478 0.00 0.00 41.18 2.83
3854 4208 0.691078 GGGTCCACCTCCATAGAGCA 60.691 60.000 0.00 0.00 38.96 4.26
4015 4369 0.169451 GGTCCCAAAACCGCAATACG 59.831 55.000 0.00 0.00 43.15 3.06
4149 4743 7.117241 ACGTGTCAACTCAGTTGTTATATTG 57.883 36.000 17.27 5.16 43.23 1.90
4153 4747 5.353123 ACAAACGTGTCAACTCAGTTGTTAT 59.647 36.000 17.27 0.00 43.23 1.89
4194 4788 5.413309 ACACAAACACCAAAAGGAAATCA 57.587 34.783 0.00 0.00 0.00 2.57
4271 4866 5.432885 AAAATTCAGTTACAAGTGACCCG 57.567 39.130 0.00 0.00 38.04 5.28
4412 5012 1.202222 CGAGGAATTGTGAATGGCTGC 60.202 52.381 0.00 0.00 0.00 5.25
4417 5017 3.495193 CAACTGCGAGGAATTGTGAATG 58.505 45.455 0.00 0.00 0.00 2.67
4418 5018 2.489329 CCAACTGCGAGGAATTGTGAAT 59.511 45.455 0.00 0.00 0.00 2.57
4460 5061 3.614870 GCCTTAACACAGCCCATTTCAAG 60.615 47.826 0.00 0.00 0.00 3.02
4548 5149 0.179073 CTTCCTGATGGCGTCCGATT 60.179 55.000 3.88 0.00 0.00 3.34
4550 5151 2.721167 CCTTCCTGATGGCGTCCGA 61.721 63.158 3.88 0.00 0.00 4.55
4573 5174 1.300931 GCAGAAGACCTGTGCGTCA 60.301 57.895 0.00 0.00 44.71 4.35
4576 5177 2.031516 CCTGCAGAAGACCTGTGCG 61.032 63.158 17.39 0.00 44.71 5.34
4612 5213 9.152595 GAACAAATATTTAGGAACGAAGAGAGT 57.847 33.333 0.00 0.00 0.00 3.24
4613 5214 9.372369 AGAACAAATATTTAGGAACGAAGAGAG 57.628 33.333 0.00 0.00 0.00 3.20
4614 5215 9.720769 AAGAACAAATATTTAGGAACGAAGAGA 57.279 29.630 0.00 0.00 0.00 3.10
4615 5216 9.974750 GAAGAACAAATATTTAGGAACGAAGAG 57.025 33.333 0.00 0.00 0.00 2.85
4616 5217 9.720769 AGAAGAACAAATATTTAGGAACGAAGA 57.279 29.630 0.00 0.00 0.00 2.87
4647 5248 8.653338 GCTTCGTATATAGTCACTTGTTGAAAA 58.347 33.333 0.00 0.00 35.39 2.29
4648 5249 7.815549 TGCTTCGTATATAGTCACTTGTTGAAA 59.184 33.333 0.00 0.00 35.39 2.69
4649 5250 7.317390 TGCTTCGTATATAGTCACTTGTTGAA 58.683 34.615 0.00 0.00 35.39 2.69
4650 5251 6.859017 TGCTTCGTATATAGTCACTTGTTGA 58.141 36.000 0.00 0.00 0.00 3.18
4651 5252 7.520119 TTGCTTCGTATATAGTCACTTGTTG 57.480 36.000 0.00 0.00 0.00 3.33
4652 5253 8.542497 TTTTGCTTCGTATATAGTCACTTGTT 57.458 30.769 0.00 0.00 0.00 2.83
4653 5254 8.604035 CATTTTGCTTCGTATATAGTCACTTGT 58.396 33.333 0.00 0.00 0.00 3.16
4654 5255 8.817100 TCATTTTGCTTCGTATATAGTCACTTG 58.183 33.333 0.00 0.00 0.00 3.16
4655 5256 8.942338 TCATTTTGCTTCGTATATAGTCACTT 57.058 30.769 0.00 0.00 0.00 3.16
4656 5257 8.198109 ACTCATTTTGCTTCGTATATAGTCACT 58.802 33.333 0.00 0.00 0.00 3.41
4657 5258 8.269424 CACTCATTTTGCTTCGTATATAGTCAC 58.731 37.037 0.00 0.00 0.00 3.67
4658 5259 8.194769 TCACTCATTTTGCTTCGTATATAGTCA 58.805 33.333 0.00 0.00 0.00 3.41
4659 5260 8.575565 TCACTCATTTTGCTTCGTATATAGTC 57.424 34.615 0.00 0.00 0.00 2.59
4660 5261 8.942338 TTCACTCATTTTGCTTCGTATATAGT 57.058 30.769 0.00 0.00 0.00 2.12
4661 5262 9.803130 CATTCACTCATTTTGCTTCGTATATAG 57.197 33.333 0.00 0.00 0.00 1.31
4662 5263 9.325198 ACATTCACTCATTTTGCTTCGTATATA 57.675 29.630 0.00 0.00 0.00 0.86
4663 5264 8.213518 ACATTCACTCATTTTGCTTCGTATAT 57.786 30.769 0.00 0.00 0.00 0.86
4664 5265 7.609760 ACATTCACTCATTTTGCTTCGTATA 57.390 32.000 0.00 0.00 0.00 1.47
4665 5266 6.500684 ACATTCACTCATTTTGCTTCGTAT 57.499 33.333 0.00 0.00 0.00 3.06
4666 5267 5.940192 ACATTCACTCATTTTGCTTCGTA 57.060 34.783 0.00 0.00 0.00 3.43
4667 5268 4.836125 ACATTCACTCATTTTGCTTCGT 57.164 36.364 0.00 0.00 0.00 3.85
4668 5269 5.565259 GTGTACATTCACTCATTTTGCTTCG 59.435 40.000 0.00 0.00 35.68 3.79
4669 5270 6.672147 AGTGTACATTCACTCATTTTGCTTC 58.328 36.000 0.00 0.00 44.07 3.86
4670 5271 6.639632 AGTGTACATTCACTCATTTTGCTT 57.360 33.333 0.00 0.00 44.07 3.91
4699 5300 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
4701 5302 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
4702 5303 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
4703 5304 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
4704 5305 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
4705 5306 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
4706 5307 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
4707 5308 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
4708 5309 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
4709 5310 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
4710 5311 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
4723 5324 8.884726 GTCTTTTAGAGATTCAAATGGACTACC 58.115 37.037 0.00 0.00 36.61 3.18
4724 5325 9.436957 TGTCTTTTAGAGATTCAAATGGACTAC 57.563 33.333 0.00 0.00 36.61 2.73
4726 5327 8.924511 TTGTCTTTTAGAGATTCAAATGGACT 57.075 30.769 0.00 0.00 36.61 3.85
4740 5341 9.947433 TCCGTTCCTAAATATTTGTCTTTTAGA 57.053 29.630 11.05 0.00 35.79 2.10
4742 5343 9.169592 CCTCCGTTCCTAAATATTTGTCTTTTA 57.830 33.333 11.05 0.00 0.00 1.52
4743 5344 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
4744 5345 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4745 5346 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4746 5347 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4747 5348 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4748 5349 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4749 5350 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4750 5351 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4751 5352 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
4752 5353 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
4753 5354 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
4754 5355 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
4755 5356 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
4756 5357 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
4757 5358 3.462579 AGATTCTACTCCCTCCGTTCCTA 59.537 47.826 0.00 0.00 0.00 2.94
4758 5359 2.245287 AGATTCTACTCCCTCCGTTCCT 59.755 50.000 0.00 0.00 0.00 3.36
4759 5360 2.668625 AGATTCTACTCCCTCCGTTCC 58.331 52.381 0.00 0.00 0.00 3.62
4760 5361 7.706100 ATATTAGATTCTACTCCCTCCGTTC 57.294 40.000 0.00 0.00 0.00 3.95
4761 5362 8.493787 AAATATTAGATTCTACTCCCTCCGTT 57.506 34.615 0.00 0.00 0.00 4.44
4762 5363 7.728981 TGAAATATTAGATTCTACTCCCTCCGT 59.271 37.037 0.00 0.00 0.00 4.69
4763 5364 8.123639 TGAAATATTAGATTCTACTCCCTCCG 57.876 38.462 0.00 0.00 0.00 4.63
4764 5365 9.315363 TCTGAAATATTAGATTCTACTCCCTCC 57.685 37.037 0.00 0.00 0.00 4.30
4783 5384 7.716123 TGACAGCCAAAATCAAATTTCTGAAAT 59.284 29.630 9.76 9.76 30.55 2.17
4812 5413 1.021390 CACCACCACTCTTCATCGCC 61.021 60.000 0.00 0.00 0.00 5.54
4832 5433 1.448540 ACCGCTGTCAGCTATGCAC 60.449 57.895 22.13 0.00 39.60 4.57
4842 5443 5.041951 TGATTAATTCAAACACCGCTGTC 57.958 39.130 0.00 0.00 0.00 3.51
4866 5467 6.596888 AGATTGTACACAATTCTGTCCATCAG 59.403 38.462 8.88 0.00 45.72 2.90
4881 5482 7.382218 CCTTGTTGAAATTTCCAGATTGTACAC 59.618 37.037 15.48 0.00 0.00 2.90
4933 5534 1.915141 CACCAACTCTCAGCCCAATT 58.085 50.000 0.00 0.00 0.00 2.32
4934 5535 0.610232 GCACCAACTCTCAGCCCAAT 60.610 55.000 0.00 0.00 0.00 3.16
4938 5539 2.338577 ATATGCACCAACTCTCAGCC 57.661 50.000 0.00 0.00 0.00 4.85
4942 5543 5.886960 AGTCAAAATATGCACCAACTCTC 57.113 39.130 0.00 0.00 0.00 3.20
5058 5659 0.331616 ATGGTCAGGGGTAACTTGGC 59.668 55.000 0.00 0.00 0.00 4.52
5084 5685 3.883489 ACCAGTTTTCACAGGTTTCTAGC 59.117 43.478 0.00 0.00 39.78 3.42
5104 5705 8.021396 GGAGTCAAAATAATGAAAGTGTACACC 58.979 37.037 22.28 8.04 0.00 4.16
5131 5732 8.525290 AAGCTAGCCAATTTTCACTATGTTAT 57.475 30.769 12.13 0.00 0.00 1.89
5137 5738 6.892658 TTGAAAGCTAGCCAATTTTCACTA 57.107 33.333 22.45 11.42 38.75 2.74
5146 5747 6.843069 GAAAACAATTTGAAAGCTAGCCAA 57.157 33.333 12.13 5.92 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.