Multiple sequence alignment - TraesCS7B01G042700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G042700 chr7B 100.000 4425 0 0 1 4425 42038268 42033844 0.000000e+00 8172.0
1 TraesCS7B01G042700 chr7B 85.385 130 17 2 1047 1175 24043641 24043769 2.780000e-27 134.0
2 TraesCS7B01G042700 chr7D 92.727 3410 148 45 396 3734 90858109 90854729 0.000000e+00 4831.0
3 TraesCS7B01G042700 chr7D 78.984 433 69 16 2346 2775 77087667 77088080 4.360000e-70 276.0
4 TraesCS7B01G042700 chr7D 86.294 197 22 4 1451 1643 77085133 77085328 4.480000e-50 209.0
5 TraesCS7B01G042700 chr7D 79.167 312 43 15 1047 1348 77084740 77085039 3.490000e-46 196.0
6 TraesCS7B01G042700 chr7D 93.333 90 6 0 1 90 615443513 615443424 2.780000e-27 134.0
7 TraesCS7B01G042700 chr7D 96.000 50 2 0 193 242 90858259 90858210 1.020000e-11 82.4
8 TraesCS7B01G042700 chr7A 84.718 1865 135 75 396 2238 92896662 92894926 0.000000e+00 1727.0
9 TraesCS7B01G042700 chr7A 88.842 1434 108 33 2320 3734 92894883 92893483 0.000000e+00 1714.0
10 TraesCS7B01G042700 chr1B 96.825 693 22 0 3733 4425 526383029 526382337 0.000000e+00 1158.0
11 TraesCS7B01G042700 chr5D 96.537 693 24 0 3733 4425 397616298 397615606 0.000000e+00 1147.0
12 TraesCS7B01G042700 chr5D 95.238 693 33 0 3733 4425 15726814 15727506 0.000000e+00 1098.0
13 TraesCS7B01G042700 chr3A 95.960 693 28 0 3733 4425 87796123 87796815 0.000000e+00 1125.0
14 TraesCS7B01G042700 chr2B 95.815 693 28 1 3733 4425 12282221 12282912 0.000000e+00 1118.0
15 TraesCS7B01G042700 chr2B 92.308 91 6 1 1 90 657841337 657841247 1.290000e-25 128.0
16 TraesCS7B01G042700 chr2D 95.671 693 30 0 3733 4425 643683296 643682604 0.000000e+00 1114.0
17 TraesCS7B01G042700 chr4A 95.094 693 34 0 3733 4425 597728372 597727680 0.000000e+00 1092.0
18 TraesCS7B01G042700 chr3B 95.094 693 34 0 3733 4425 59226880 59227572 0.000000e+00 1092.0
19 TraesCS7B01G042700 chr5B 94.949 693 35 0 3733 4425 660692064 660691372 0.000000e+00 1086.0
20 TraesCS7B01G042700 chr5B 93.407 91 4 2 1 90 381041205 381041116 2.780000e-27 134.0
21 TraesCS7B01G042700 chr5B 92.308 91 6 1 1 90 710208587 710208677 1.290000e-25 128.0
22 TraesCS7B01G042700 chr4B 84.165 461 43 16 1516 1968 624106703 624107141 1.900000e-113 420.0
23 TraesCS7B01G042700 chr1D 95.556 90 4 0 1 90 372878995 372879084 1.280000e-30 145.0
24 TraesCS7B01G042700 chrUn 93.407 91 5 1 1 90 80174852 80174942 2.780000e-27 134.0
25 TraesCS7B01G042700 chrUn 92.308 91 6 1 1 90 94329634 94329544 1.290000e-25 128.0
26 TraesCS7B01G042700 chr3D 92.308 91 6 1 1 90 429626351 429626261 1.290000e-25 128.0
27 TraesCS7B01G042700 chr6D 92.222 90 6 1 1 90 470941045 470941133 4.650000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G042700 chr7B 42033844 42038268 4424 True 8172.0 8172 100.000000 1 4425 1 chr7B.!!$R1 4424
1 TraesCS7B01G042700 chr7D 90854729 90858259 3530 True 2456.7 4831 94.363500 193 3734 2 chr7D.!!$R2 3541
2 TraesCS7B01G042700 chr7D 77084740 77088080 3340 False 227.0 276 81.481667 1047 2775 3 chr7D.!!$F1 1728
3 TraesCS7B01G042700 chr7A 92893483 92896662 3179 True 1720.5 1727 86.780000 396 3734 2 chr7A.!!$R1 3338
4 TraesCS7B01G042700 chr1B 526382337 526383029 692 True 1158.0 1158 96.825000 3733 4425 1 chr1B.!!$R1 692
5 TraesCS7B01G042700 chr5D 397615606 397616298 692 True 1147.0 1147 96.537000 3733 4425 1 chr5D.!!$R1 692
6 TraesCS7B01G042700 chr5D 15726814 15727506 692 False 1098.0 1098 95.238000 3733 4425 1 chr5D.!!$F1 692
7 TraesCS7B01G042700 chr3A 87796123 87796815 692 False 1125.0 1125 95.960000 3733 4425 1 chr3A.!!$F1 692
8 TraesCS7B01G042700 chr2B 12282221 12282912 691 False 1118.0 1118 95.815000 3733 4425 1 chr2B.!!$F1 692
9 TraesCS7B01G042700 chr2D 643682604 643683296 692 True 1114.0 1114 95.671000 3733 4425 1 chr2D.!!$R1 692
10 TraesCS7B01G042700 chr4A 597727680 597728372 692 True 1092.0 1092 95.094000 3733 4425 1 chr4A.!!$R1 692
11 TraesCS7B01G042700 chr3B 59226880 59227572 692 False 1092.0 1092 95.094000 3733 4425 1 chr3B.!!$F1 692
12 TraesCS7B01G042700 chr5B 660691372 660692064 692 True 1086.0 1086 94.949000 3733 4425 1 chr5B.!!$R2 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.393820 CTGTTTGGGTTGCCATGCTT 59.606 50.0 0.00 0.00 0.00 3.91 F
89 90 0.451783 GTTGCCATGCTTAACTCCCG 59.548 55.0 0.00 0.00 0.00 5.14 F
1663 1739 0.407918 TTCCACCATGAACCTTCCCC 59.592 55.0 0.00 0.00 0.00 4.81 F
2234 4065 1.120530 ACATCTACAACCTAGGGGCG 58.879 55.0 14.81 3.11 35.63 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1732 0.617820 TCGAAGGAAGGAGGGGAAGG 60.618 60.000 0.0 0.0 0.00 3.46 R
1932 3761 2.135933 GTTCAGTGTGGAGTTTCTCGG 58.864 52.381 0.0 0.0 0.00 4.63 R
2510 4354 1.073763 TGATGCCCACTGTTGTAAGCT 59.926 47.619 0.0 0.0 0.00 3.74 R
3862 5752 1.142688 AAGGGTGAGGCCTGGAATGT 61.143 55.000 12.0 0.0 37.43 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.616774 TTTTCCAGAAAATTGCCATGTTTC 57.383 33.333 1.45 0.00 35.57 2.78
27 28 4.270245 TCCAGAAAATTGCCATGTTTCC 57.730 40.909 2.96 0.00 32.74 3.13
28 29 3.007831 TCCAGAAAATTGCCATGTTTCCC 59.992 43.478 2.96 0.00 32.74 3.97
29 30 3.008266 CCAGAAAATTGCCATGTTTCCCT 59.992 43.478 2.96 0.00 32.74 4.20
30 31 4.222588 CCAGAAAATTGCCATGTTTCCCTA 59.777 41.667 2.96 0.00 32.74 3.53
31 32 5.279910 CCAGAAAATTGCCATGTTTCCCTAA 60.280 40.000 2.96 0.00 32.74 2.69
32 33 6.408869 CAGAAAATTGCCATGTTTCCCTAAT 58.591 36.000 2.96 0.00 32.74 1.73
33 34 6.536224 CAGAAAATTGCCATGTTTCCCTAATC 59.464 38.462 2.96 0.00 32.74 1.75
34 35 6.441604 AGAAAATTGCCATGTTTCCCTAATCT 59.558 34.615 2.96 0.00 32.74 2.40
35 36 5.859205 AATTGCCATGTTTCCCTAATCTC 57.141 39.130 0.00 0.00 0.00 2.75
36 37 4.314522 TTGCCATGTTTCCCTAATCTCA 57.685 40.909 0.00 0.00 0.00 3.27
37 38 3.620488 TGCCATGTTTCCCTAATCTCAC 58.380 45.455 0.00 0.00 0.00 3.51
38 39 2.614057 GCCATGTTTCCCTAATCTCACG 59.386 50.000 0.00 0.00 0.00 4.35
39 40 3.873910 CCATGTTTCCCTAATCTCACGT 58.126 45.455 0.00 0.00 0.00 4.49
40 41 4.682320 GCCATGTTTCCCTAATCTCACGTA 60.682 45.833 0.00 0.00 0.00 3.57
41 42 5.424757 CCATGTTTCCCTAATCTCACGTAA 58.575 41.667 0.00 0.00 0.00 3.18
42 43 5.878116 CCATGTTTCCCTAATCTCACGTAAA 59.122 40.000 0.00 0.00 0.00 2.01
43 44 6.183360 CCATGTTTCCCTAATCTCACGTAAAC 60.183 42.308 0.00 0.00 0.00 2.01
44 45 6.105397 TGTTTCCCTAATCTCACGTAAACT 57.895 37.500 0.00 0.00 0.00 2.66
45 46 7.230849 TGTTTCCCTAATCTCACGTAAACTA 57.769 36.000 0.00 0.00 0.00 2.24
46 47 7.669427 TGTTTCCCTAATCTCACGTAAACTAA 58.331 34.615 0.00 0.00 0.00 2.24
47 48 8.149647 TGTTTCCCTAATCTCACGTAAACTAAA 58.850 33.333 0.00 0.00 0.00 1.85
48 49 8.438513 GTTTCCCTAATCTCACGTAAACTAAAC 58.561 37.037 0.00 0.00 0.00 2.01
49 50 7.472334 TCCCTAATCTCACGTAAACTAAACT 57.528 36.000 0.00 0.00 0.00 2.66
50 51 7.899973 TCCCTAATCTCACGTAAACTAAACTT 58.100 34.615 0.00 0.00 0.00 2.66
51 52 7.816031 TCCCTAATCTCACGTAAACTAAACTTG 59.184 37.037 0.00 0.00 0.00 3.16
52 53 7.064253 CCCTAATCTCACGTAAACTAAACTTGG 59.936 40.741 0.00 0.00 0.00 3.61
53 54 5.857822 ATCTCACGTAAACTAAACTTGGC 57.142 39.130 0.00 0.00 0.00 4.52
54 55 4.695396 TCTCACGTAAACTAAACTTGGCA 58.305 39.130 0.00 0.00 0.00 4.92
55 56 5.302360 TCTCACGTAAACTAAACTTGGCAT 58.698 37.500 0.00 0.00 0.00 4.40
56 57 5.407387 TCTCACGTAAACTAAACTTGGCATC 59.593 40.000 0.00 0.00 0.00 3.91
57 58 5.302360 TCACGTAAACTAAACTTGGCATCT 58.698 37.500 0.00 0.00 0.00 2.90
58 59 6.457355 TCACGTAAACTAAACTTGGCATCTA 58.543 36.000 0.00 0.00 0.00 1.98
59 60 6.930164 TCACGTAAACTAAACTTGGCATCTAA 59.070 34.615 0.00 0.00 0.00 2.10
60 61 7.441760 TCACGTAAACTAAACTTGGCATCTAAA 59.558 33.333 0.00 0.00 0.00 1.85
61 62 8.234546 CACGTAAACTAAACTTGGCATCTAAAT 58.765 33.333 0.00 0.00 0.00 1.40
62 63 8.448615 ACGTAAACTAAACTTGGCATCTAAATC 58.551 33.333 0.00 0.00 0.00 2.17
63 64 8.665685 CGTAAACTAAACTTGGCATCTAAATCT 58.334 33.333 0.00 0.00 0.00 2.40
64 65 9.774742 GTAAACTAAACTTGGCATCTAAATCTG 57.225 33.333 0.00 0.00 0.00 2.90
65 66 8.409358 AAACTAAACTTGGCATCTAAATCTGT 57.591 30.769 0.00 0.00 0.00 3.41
66 67 8.409358 AACTAAACTTGGCATCTAAATCTGTT 57.591 30.769 0.00 0.00 0.00 3.16
67 68 8.409358 ACTAAACTTGGCATCTAAATCTGTTT 57.591 30.769 0.00 0.00 0.00 2.83
68 69 8.299570 ACTAAACTTGGCATCTAAATCTGTTTG 58.700 33.333 0.00 0.00 0.00 2.93
69 70 5.649782 ACTTGGCATCTAAATCTGTTTGG 57.350 39.130 0.00 0.00 0.00 3.28
70 71 4.463891 ACTTGGCATCTAAATCTGTTTGGG 59.536 41.667 0.00 0.00 0.00 4.12
71 72 4.046286 TGGCATCTAAATCTGTTTGGGT 57.954 40.909 0.00 0.00 0.00 4.51
72 73 4.415596 TGGCATCTAAATCTGTTTGGGTT 58.584 39.130 0.00 0.00 0.00 4.11
73 74 4.220382 TGGCATCTAAATCTGTTTGGGTTG 59.780 41.667 0.00 0.00 0.00 3.77
74 75 4.176271 GCATCTAAATCTGTTTGGGTTGC 58.824 43.478 0.00 0.00 32.73 4.17
75 76 4.747810 CATCTAAATCTGTTTGGGTTGCC 58.252 43.478 0.00 0.00 0.00 4.52
76 77 3.838565 TCTAAATCTGTTTGGGTTGCCA 58.161 40.909 0.00 0.00 0.00 4.92
77 78 4.415596 TCTAAATCTGTTTGGGTTGCCAT 58.584 39.130 0.00 0.00 0.00 4.40
78 79 3.405823 AAATCTGTTTGGGTTGCCATG 57.594 42.857 0.00 0.00 0.00 3.66
79 80 0.609662 ATCTGTTTGGGTTGCCATGC 59.390 50.000 0.00 0.00 0.00 4.06
80 81 0.469705 TCTGTTTGGGTTGCCATGCT 60.470 50.000 0.00 0.00 0.00 3.79
81 82 0.393820 CTGTTTGGGTTGCCATGCTT 59.606 50.000 0.00 0.00 0.00 3.91
82 83 1.617850 CTGTTTGGGTTGCCATGCTTA 59.382 47.619 0.00 0.00 0.00 3.09
83 84 2.036992 CTGTTTGGGTTGCCATGCTTAA 59.963 45.455 0.00 0.00 0.00 1.85
84 85 2.224161 TGTTTGGGTTGCCATGCTTAAC 60.224 45.455 0.00 0.00 0.00 2.01
85 86 2.008242 TTGGGTTGCCATGCTTAACT 57.992 45.000 0.00 0.00 0.00 2.24
86 87 1.544724 TGGGTTGCCATGCTTAACTC 58.455 50.000 0.00 0.00 0.00 3.01
87 88 0.817654 GGGTTGCCATGCTTAACTCC 59.182 55.000 0.00 0.00 0.00 3.85
88 89 0.817654 GGTTGCCATGCTTAACTCCC 59.182 55.000 0.00 0.00 0.00 4.30
89 90 0.451783 GTTGCCATGCTTAACTCCCG 59.548 55.000 0.00 0.00 0.00 5.14
90 91 0.679640 TTGCCATGCTTAACTCCCGG 60.680 55.000 0.00 0.00 0.00 5.73
91 92 1.223487 GCCATGCTTAACTCCCGGA 59.777 57.895 0.73 0.00 0.00 5.14
92 93 0.815615 GCCATGCTTAACTCCCGGAG 60.816 60.000 13.31 13.31 35.52 4.63
93 94 0.541863 CCATGCTTAACTCCCGGAGT 59.458 55.000 14.84 14.84 45.64 3.85
104 105 2.626743 ACTCCCGGAGTTATCATTACCG 59.373 50.000 14.84 0.00 40.28 4.02
105 106 2.626743 CTCCCGGAGTTATCATTACCGT 59.373 50.000 0.73 0.00 41.67 4.83
106 107 3.822735 CTCCCGGAGTTATCATTACCGTA 59.177 47.826 0.73 0.00 41.67 4.02
107 108 4.214310 TCCCGGAGTTATCATTACCGTAA 58.786 43.478 0.73 0.00 41.67 3.18
108 109 4.037923 TCCCGGAGTTATCATTACCGTAAC 59.962 45.833 0.73 0.00 41.67 2.50
109 110 4.038402 CCCGGAGTTATCATTACCGTAACT 59.962 45.833 0.73 0.00 40.35 2.24
110 111 5.452356 CCCGGAGTTATCATTACCGTAACTT 60.452 44.000 0.73 0.00 38.42 2.66
111 112 6.044682 CCGGAGTTATCATTACCGTAACTTT 58.955 40.000 0.00 0.00 38.42 2.66
112 113 6.536224 CCGGAGTTATCATTACCGTAACTTTT 59.464 38.462 0.00 0.00 38.42 2.27
113 114 7.064966 CCGGAGTTATCATTACCGTAACTTTTT 59.935 37.037 0.00 0.00 38.42 1.94
114 115 7.901377 CGGAGTTATCATTACCGTAACTTTTTG 59.099 37.037 0.00 0.00 38.42 2.44
115 116 8.724229 GGAGTTATCATTACCGTAACTTTTTGT 58.276 33.333 0.00 0.00 38.42 2.83
118 119 9.759259 GTTATCATTACCGTAACTTTTTGTACC 57.241 33.333 0.00 0.00 0.00 3.34
119 120 6.464895 TCATTACCGTAACTTTTTGTACCG 57.535 37.500 0.00 0.00 0.00 4.02
120 121 5.988561 TCATTACCGTAACTTTTTGTACCGT 59.011 36.000 0.00 0.00 0.00 4.83
121 122 5.649602 TTACCGTAACTTTTTGTACCGTG 57.350 39.130 0.00 0.00 0.00 4.94
122 123 3.530535 ACCGTAACTTTTTGTACCGTGT 58.469 40.909 0.00 0.00 0.00 4.49
123 124 3.555547 ACCGTAACTTTTTGTACCGTGTC 59.444 43.478 0.00 0.00 0.00 3.67
124 125 3.555139 CCGTAACTTTTTGTACCGTGTCA 59.445 43.478 0.00 0.00 0.00 3.58
125 126 4.033817 CCGTAACTTTTTGTACCGTGTCAA 59.966 41.667 0.00 0.00 0.00 3.18
126 127 5.447010 CCGTAACTTTTTGTACCGTGTCAAA 60.447 40.000 0.00 0.00 32.75 2.69
127 128 6.020372 CGTAACTTTTTGTACCGTGTCAAAA 58.980 36.000 10.37 10.37 40.30 2.44
128 129 6.522510 CGTAACTTTTTGTACCGTGTCAAAAA 59.477 34.615 18.84 18.84 45.14 1.94
154 155 8.446599 AACGTATTGTAATTTGATAAGGAGGG 57.553 34.615 0.00 0.00 0.00 4.30
155 156 7.798071 ACGTATTGTAATTTGATAAGGAGGGA 58.202 34.615 0.00 0.00 0.00 4.20
156 157 7.931948 ACGTATTGTAATTTGATAAGGAGGGAG 59.068 37.037 0.00 0.00 0.00 4.30
157 158 7.931948 CGTATTGTAATTTGATAAGGAGGGAGT 59.068 37.037 0.00 0.00 0.00 3.85
162 163 9.847224 TGTAATTTGATAAGGAGGGAGTATTTC 57.153 33.333 0.00 0.00 0.00 2.17
163 164 9.847224 GTAATTTGATAAGGAGGGAGTATTTCA 57.153 33.333 0.00 0.00 0.00 2.69
164 165 8.753497 AATTTGATAAGGAGGGAGTATTTCAC 57.247 34.615 0.00 0.00 0.00 3.18
165 166 7.510675 TTTGATAAGGAGGGAGTATTTCACT 57.489 36.000 0.00 0.00 44.17 3.41
166 167 6.485830 TGATAAGGAGGGAGTATTTCACTG 57.514 41.667 0.00 0.00 40.54 3.66
167 168 5.964477 TGATAAGGAGGGAGTATTTCACTGT 59.036 40.000 0.00 0.00 40.54 3.55
168 169 4.559862 AAGGAGGGAGTATTTCACTGTG 57.440 45.455 0.17 0.17 40.54 3.66
169 170 3.521727 AGGAGGGAGTATTTCACTGTGT 58.478 45.455 7.79 0.00 40.54 3.72
170 171 3.910627 AGGAGGGAGTATTTCACTGTGTT 59.089 43.478 7.79 0.00 40.54 3.32
171 172 4.351111 AGGAGGGAGTATTTCACTGTGTTT 59.649 41.667 7.79 0.00 40.54 2.83
172 173 5.070685 GGAGGGAGTATTTCACTGTGTTTT 58.929 41.667 7.79 0.00 40.54 2.43
173 174 5.535030 GGAGGGAGTATTTCACTGTGTTTTT 59.465 40.000 7.79 0.00 40.54 1.94
174 175 6.294010 GGAGGGAGTATTTCACTGTGTTTTTC 60.294 42.308 7.79 0.43 40.54 2.29
175 176 5.535030 AGGGAGTATTTCACTGTGTTTTTCC 59.465 40.000 7.79 8.51 38.43 3.13
176 177 5.300792 GGGAGTATTTCACTGTGTTTTTCCA 59.699 40.000 7.79 0.00 37.72 3.53
177 178 6.206498 GGAGTATTTCACTGTGTTTTTCCAC 58.794 40.000 7.79 0.00 37.72 4.02
178 179 6.039382 GGAGTATTTCACTGTGTTTTTCCACT 59.961 38.462 7.79 3.76 37.72 4.00
179 180 7.227910 GGAGTATTTCACTGTGTTTTTCCACTA 59.772 37.037 7.79 0.00 37.72 2.74
180 181 8.691661 AGTATTTCACTGTGTTTTTCCACTAT 57.308 30.769 7.79 0.00 35.62 2.12
181 182 9.787435 AGTATTTCACTGTGTTTTTCCACTATA 57.213 29.630 7.79 0.00 35.62 1.31
185 186 8.684386 TTCACTGTGTTTTTCCACTATAATCA 57.316 30.769 7.79 0.00 36.30 2.57
186 187 8.862325 TCACTGTGTTTTTCCACTATAATCAT 57.138 30.769 7.79 0.00 36.30 2.45
187 188 8.729756 TCACTGTGTTTTTCCACTATAATCATG 58.270 33.333 7.79 0.00 36.30 3.07
188 189 7.970061 CACTGTGTTTTTCCACTATAATCATGG 59.030 37.037 0.00 0.00 36.30 3.66
189 190 7.888021 ACTGTGTTTTTCCACTATAATCATGGA 59.112 33.333 0.00 0.00 40.83 3.41
190 191 8.821686 TGTGTTTTTCCACTATAATCATGGAT 57.178 30.769 0.00 0.00 42.09 3.41
191 192 8.902806 TGTGTTTTTCCACTATAATCATGGATC 58.097 33.333 0.00 0.00 42.09 3.36
228 229 2.725723 TGTCGTCCGAAATCGTGTAAAC 59.274 45.455 1.79 0.00 37.74 2.01
230 231 1.058129 CGTCCGAAATCGTGTAAACGG 59.942 52.381 5.43 0.00 41.39 4.44
242 243 3.303461 CGTGTAAACGGTTTGCATCAAGA 60.303 43.478 23.64 1.03 37.58 3.02
244 245 5.219633 GTGTAAACGGTTTGCATCAAGAAT 58.780 37.500 23.64 0.00 37.58 2.40
247 248 2.238521 ACGGTTTGCATCAAGAATGGT 58.761 42.857 0.00 0.00 35.77 3.55
250 251 3.440173 CGGTTTGCATCAAGAATGGTACT 59.560 43.478 0.00 0.00 35.77 2.73
251 252 4.672542 CGGTTTGCATCAAGAATGGTACTG 60.673 45.833 0.00 0.00 35.77 2.74
252 253 4.168760 GTTTGCATCAAGAATGGTACTGC 58.831 43.478 0.00 0.00 35.77 4.40
253 254 2.368439 TGCATCAAGAATGGTACTGCC 58.632 47.619 0.00 0.00 35.77 4.85
254 255 1.678101 GCATCAAGAATGGTACTGCCC 59.322 52.381 0.00 0.00 35.77 5.36
255 256 2.684927 GCATCAAGAATGGTACTGCCCT 60.685 50.000 0.00 0.00 35.77 5.19
256 257 3.624777 CATCAAGAATGGTACTGCCCTT 58.375 45.455 0.00 0.00 36.04 3.95
257 258 3.806949 TCAAGAATGGTACTGCCCTTT 57.193 42.857 0.00 0.00 36.04 3.11
258 259 4.112634 TCAAGAATGGTACTGCCCTTTT 57.887 40.909 0.00 0.00 36.04 2.27
259 260 4.079253 TCAAGAATGGTACTGCCCTTTTC 58.921 43.478 0.00 0.00 36.04 2.29
260 261 2.711542 AGAATGGTACTGCCCTTTTCG 58.288 47.619 0.00 0.00 36.04 3.46
261 262 2.039879 AGAATGGTACTGCCCTTTTCGT 59.960 45.455 0.00 0.00 36.04 3.85
262 263 1.821216 ATGGTACTGCCCTTTTCGTG 58.179 50.000 0.00 0.00 36.04 4.35
263 264 0.470766 TGGTACTGCCCTTTTCGTGT 59.529 50.000 0.00 0.00 36.04 4.49
264 265 1.693062 TGGTACTGCCCTTTTCGTGTA 59.307 47.619 0.00 0.00 36.04 2.90
265 266 2.303600 TGGTACTGCCCTTTTCGTGTAT 59.696 45.455 0.00 0.00 36.04 2.29
266 267 2.676342 GGTACTGCCCTTTTCGTGTATG 59.324 50.000 0.00 0.00 0.00 2.39
267 268 2.561478 ACTGCCCTTTTCGTGTATGT 57.439 45.000 0.00 0.00 0.00 2.29
268 269 2.858745 ACTGCCCTTTTCGTGTATGTT 58.141 42.857 0.00 0.00 0.00 2.71
269 270 2.552315 ACTGCCCTTTTCGTGTATGTTG 59.448 45.455 0.00 0.00 0.00 3.33
270 271 2.552315 CTGCCCTTTTCGTGTATGTTGT 59.448 45.455 0.00 0.00 0.00 3.32
271 272 2.550606 TGCCCTTTTCGTGTATGTTGTC 59.449 45.455 0.00 0.00 0.00 3.18
272 273 2.412325 GCCCTTTTCGTGTATGTTGTCG 60.412 50.000 0.00 0.00 0.00 4.35
273 274 3.061322 CCCTTTTCGTGTATGTTGTCGA 58.939 45.455 0.00 0.00 0.00 4.20
284 285 5.351465 GTGTATGTTGTCGATCCAAAGATGT 59.649 40.000 0.00 0.00 30.90 3.06
290 291 3.195610 TGTCGATCCAAAGATGTACTGCT 59.804 43.478 0.00 0.00 30.90 4.24
292 293 2.868583 CGATCCAAAGATGTACTGCTGG 59.131 50.000 0.00 0.00 35.16 4.85
293 294 3.430790 CGATCCAAAGATGTACTGCTGGA 60.431 47.826 0.00 0.00 42.10 3.86
294 295 4.712476 GATCCAAAGATGTACTGCTGGAT 58.288 43.478 12.38 12.38 46.20 3.41
295 296 5.509670 CGATCCAAAGATGTACTGCTGGATA 60.510 44.000 12.47 0.00 44.87 2.59
296 297 5.894298 TCCAAAGATGTACTGCTGGATAT 57.106 39.130 0.00 0.00 36.86 1.63
297 298 6.252599 TCCAAAGATGTACTGCTGGATATT 57.747 37.500 0.00 0.00 36.86 1.28
298 299 6.662755 TCCAAAGATGTACTGCTGGATATTT 58.337 36.000 0.00 0.00 36.86 1.40
299 300 7.801104 TCCAAAGATGTACTGCTGGATATTTA 58.199 34.615 0.00 0.00 36.86 1.40
301 302 9.725019 CCAAAGATGTACTGCTGGATATTTATA 57.275 33.333 0.00 0.00 35.58 0.98
348 349 4.196372 CAATGGTGCAAGGTGGGT 57.804 55.556 0.00 0.00 0.00 4.51
349 350 1.966762 CAATGGTGCAAGGTGGGTC 59.033 57.895 0.00 0.00 0.00 4.46
350 351 1.228862 AATGGTGCAAGGTGGGTCC 60.229 57.895 0.00 0.00 0.00 4.46
351 352 2.017668 AATGGTGCAAGGTGGGTCCA 62.018 55.000 0.00 0.00 39.02 4.02
352 353 2.017668 ATGGTGCAAGGTGGGTCCAA 62.018 55.000 0.00 0.00 39.02 3.53
353 354 1.228862 GGTGCAAGGTGGGTCCAAT 60.229 57.895 0.00 0.00 39.02 3.16
354 355 1.250840 GGTGCAAGGTGGGTCCAATC 61.251 60.000 0.00 0.00 39.02 2.67
355 356 1.076549 TGCAAGGTGGGTCCAATCC 59.923 57.895 0.00 0.00 39.02 3.01
356 357 1.076549 GCAAGGTGGGTCCAATCCA 59.923 57.895 0.00 0.00 39.02 3.41
357 358 0.967380 GCAAGGTGGGTCCAATCCAG 60.967 60.000 0.00 0.00 39.02 3.86
359 360 2.043953 GGTGGGTCCAATCCAGCC 60.044 66.667 0.00 0.00 44.45 4.85
360 361 2.043953 GTGGGTCCAATCCAGCCC 60.044 66.667 0.00 0.00 41.42 5.19
361 362 3.346734 TGGGTCCAATCCAGCCCC 61.347 66.667 0.00 0.00 40.36 5.80
362 363 4.506255 GGGTCCAATCCAGCCCCG 62.506 72.222 0.00 0.00 35.18 5.73
363 364 3.728373 GGTCCAATCCAGCCCCGT 61.728 66.667 0.00 0.00 0.00 5.28
364 365 2.438434 GTCCAATCCAGCCCCGTG 60.438 66.667 0.00 0.00 0.00 4.94
365 366 3.727258 TCCAATCCAGCCCCGTGG 61.727 66.667 0.00 0.00 39.19 4.94
384 385 4.455606 GTGGCTTCATATTTACTGCTCCT 58.544 43.478 0.00 0.00 0.00 3.69
385 386 5.611374 GTGGCTTCATATTTACTGCTCCTA 58.389 41.667 0.00 0.00 0.00 2.94
386 387 5.698545 GTGGCTTCATATTTACTGCTCCTAG 59.301 44.000 0.00 0.00 0.00 3.02
387 388 4.693095 GGCTTCATATTTACTGCTCCTAGC 59.307 45.833 0.00 0.00 42.82 3.42
388 389 5.512232 GGCTTCATATTTACTGCTCCTAGCT 60.512 44.000 0.00 0.00 42.97 3.32
389 390 6.295349 GGCTTCATATTTACTGCTCCTAGCTA 60.295 42.308 0.03 0.00 42.97 3.32
391 392 8.470805 GCTTCATATTTACTGCTCCTAGCTATA 58.529 37.037 0.00 0.00 42.97 1.31
392 393 9.796120 CTTCATATTTACTGCTCCTAGCTATAC 57.204 37.037 0.00 0.00 42.97 1.47
393 394 8.294954 TCATATTTACTGCTCCTAGCTATACC 57.705 38.462 0.00 0.00 42.97 2.73
394 395 7.893833 TCATATTTACTGCTCCTAGCTATACCA 59.106 37.037 0.00 0.00 42.97 3.25
395 396 8.700051 CATATTTACTGCTCCTAGCTATACCAT 58.300 37.037 0.00 0.00 42.97 3.55
396 397 6.996180 TTTACTGCTCCTAGCTATACCATT 57.004 37.500 0.00 0.00 42.97 3.16
397 398 4.881019 ACTGCTCCTAGCTATACCATTG 57.119 45.455 0.00 0.00 42.97 2.82
398 399 3.580458 ACTGCTCCTAGCTATACCATTGG 59.420 47.826 0.00 0.00 42.97 3.16
399 400 2.906389 TGCTCCTAGCTATACCATTGGG 59.094 50.000 7.78 0.00 42.97 4.12
400 401 2.355209 GCTCCTAGCTATACCATTGGGC 60.355 54.545 7.78 0.34 38.45 5.36
401 402 2.906389 CTCCTAGCTATACCATTGGGCA 59.094 50.000 7.78 0.00 37.90 5.36
402 403 2.906389 TCCTAGCTATACCATTGGGCAG 59.094 50.000 7.78 2.10 37.90 4.85
420 422 2.650116 GCCTTGCTCGTCCTCCTGA 61.650 63.158 0.00 0.00 0.00 3.86
431 436 2.519622 CCTCCTGACCACTGCACCA 61.520 63.158 0.00 0.00 0.00 4.17
557 565 3.271706 TTACCGCGTCACCGTCCTG 62.272 63.158 4.92 0.00 36.15 3.86
574 591 2.125391 GCATGGAGCAGCTCGACA 60.125 61.111 16.47 9.94 44.79 4.35
588 605 0.589223 TCGACAATGGCGGTGAAAAC 59.411 50.000 9.25 0.00 0.00 2.43
632 652 2.027169 CGGATCGAGGCCGGTAAC 59.973 66.667 18.71 0.00 44.87 2.50
633 653 2.420466 GGATCGAGGCCGGTAACC 59.580 66.667 1.90 0.00 36.24 2.85
644 664 4.078516 GGTAACCGAGCGGGCAGT 62.079 66.667 14.07 0.00 40.62 4.40
645 665 2.813908 GTAACCGAGCGGGCAGTG 60.814 66.667 14.07 0.00 40.62 3.66
664 684 0.667792 GAGTGGTCGAGTGAAGTGGC 60.668 60.000 0.00 0.00 0.00 5.01
666 686 3.112709 GGTCGAGTGAAGTGGCGC 61.113 66.667 0.00 0.00 0.00 6.53
751 785 2.122369 CCCGCCTTATCCTCCCCT 60.122 66.667 0.00 0.00 0.00 4.79
755 789 1.755384 GCCTTATCCTCCCCTTCCG 59.245 63.158 0.00 0.00 0.00 4.30
756 790 1.054978 GCCTTATCCTCCCCTTCCGT 61.055 60.000 0.00 0.00 0.00 4.69
757 791 1.508256 CCTTATCCTCCCCTTCCGTT 58.492 55.000 0.00 0.00 0.00 4.44
758 792 1.844497 CCTTATCCTCCCCTTCCGTTT 59.156 52.381 0.00 0.00 0.00 3.60
759 793 2.158798 CCTTATCCTCCCCTTCCGTTTC 60.159 54.545 0.00 0.00 0.00 2.78
760 794 1.503800 TATCCTCCCCTTCCGTTTCC 58.496 55.000 0.00 0.00 0.00 3.13
761 795 1.279749 ATCCTCCCCTTCCGTTTCCC 61.280 60.000 0.00 0.00 0.00 3.97
762 796 1.923909 CCTCCCCTTCCGTTTCCCT 60.924 63.158 0.00 0.00 0.00 4.20
763 797 1.602771 CTCCCCTTCCGTTTCCCTC 59.397 63.158 0.00 0.00 0.00 4.30
764 798 1.911702 CTCCCCTTCCGTTTCCCTCC 61.912 65.000 0.00 0.00 0.00 4.30
765 799 2.675371 CCCTTCCGTTTCCCTCCC 59.325 66.667 0.00 0.00 0.00 4.30
766 800 1.923909 CCCTTCCGTTTCCCTCCCT 60.924 63.158 0.00 0.00 0.00 4.20
767 801 1.602771 CCTTCCGTTTCCCTCCCTC 59.397 63.158 0.00 0.00 0.00 4.30
768 802 0.910088 CCTTCCGTTTCCCTCCCTCT 60.910 60.000 0.00 0.00 0.00 3.69
857 901 3.845259 GGCCGGCCAGTACGATCA 61.845 66.667 40.73 0.00 35.81 2.92
923 977 2.486966 GTAGGTCCGTACGCGCTT 59.513 61.111 10.49 0.00 36.67 4.68
958 1012 1.228583 AGCGAGTGGAGTGAGTGGA 60.229 57.895 0.00 0.00 0.00 4.02
969 1023 3.417101 GAGTGAGTGGAGAGTGAAGAGA 58.583 50.000 0.00 0.00 0.00 3.10
998 1052 1.218585 CTGCTCTGTGAGGCTGAGG 59.781 63.158 0.00 0.00 41.64 3.86
1023 1077 3.435186 GGGCTGCGGCTTCTTGTC 61.435 66.667 18.85 0.00 38.73 3.18
1430 1503 2.593436 CGACCCTTGCCAACGGTT 60.593 61.111 0.00 0.00 0.00 4.44
1446 1519 1.818674 CGGTTCTGGAATTCCCCTTTG 59.181 52.381 21.90 7.05 34.29 2.77
1447 1520 2.554344 CGGTTCTGGAATTCCCCTTTGA 60.554 50.000 21.90 9.15 34.29 2.69
1448 1521 3.713003 GGTTCTGGAATTCCCCTTTGAT 58.287 45.455 21.90 0.00 34.29 2.57
1651 1727 3.655777 AGAAATCTGGGTACTTTCCACCA 59.344 43.478 0.00 0.00 37.84 4.17
1656 1732 3.081804 CTGGGTACTTTCCACCATGAAC 58.918 50.000 0.00 0.00 37.84 3.18
1663 1739 0.407918 TTCCACCATGAACCTTCCCC 59.592 55.000 0.00 0.00 0.00 4.81
1680 1756 1.267121 CCCTCCTTCCTTCGAGTTCA 58.733 55.000 0.00 0.00 0.00 3.18
1768 3597 1.298859 GCAGGGCGAAGATCGTGTTT 61.299 55.000 1.45 0.00 42.81 2.83
1771 3600 1.134694 GGCGAAGATCGTGTTTGGC 59.865 57.895 1.45 0.00 42.81 4.52
1932 3761 5.048013 CCTCCATTTCCCTTGTTAACTGAAC 60.048 44.000 7.22 0.00 38.65 3.18
2234 4065 1.120530 ACATCTACAACCTAGGGGCG 58.879 55.000 14.81 3.11 35.63 6.13
2320 4152 4.135306 CTCAGGCAGAAAGATACATGCAT 58.865 43.478 0.00 0.00 40.46 3.96
2402 4246 2.169144 CACACAGCTGATGGACAGGATA 59.831 50.000 23.35 0.00 45.82 2.59
2510 4354 2.359404 GTCGGGGAGTCTGGAGGA 59.641 66.667 0.00 0.00 0.00 3.71
2572 4416 4.040339 TGTGTTCAGCTTCTGGTAAGATGA 59.960 41.667 1.82 1.82 40.45 2.92
2611 4458 6.151648 TGGAAATTCAGTGGATGTTCTTGATC 59.848 38.462 0.00 0.00 0.00 2.92
2625 4472 5.877012 TGTTCTTGATCAGGCTGTTCTTATC 59.123 40.000 22.37 14.57 0.00 1.75
2626 4473 5.682234 TCTTGATCAGGCTGTTCTTATCA 57.318 39.130 22.37 16.68 0.00 2.15
2629 4476 3.135348 TGATCAGGCTGTTCTTATCAGGG 59.865 47.826 22.37 0.00 33.98 4.45
2630 4477 2.551270 TCAGGCTGTTCTTATCAGGGT 58.449 47.619 15.27 0.00 33.98 4.34
2631 4478 2.912956 TCAGGCTGTTCTTATCAGGGTT 59.087 45.455 15.27 0.00 33.98 4.11
2632 4479 3.012518 CAGGCTGTTCTTATCAGGGTTG 58.987 50.000 6.28 0.00 33.98 3.77
2715 4562 2.178890 CAGGCAGAGCTTCATCGGC 61.179 63.158 0.00 0.00 39.35 5.54
2745 4592 2.032981 CCTGCTGAACACAACCACC 58.967 57.895 0.00 0.00 0.00 4.61
2802 4649 8.713708 ATCACTATGCTACATAACCTTCTACT 57.286 34.615 0.00 0.00 0.00 2.57
2803 4650 7.941919 TCACTATGCTACATAACCTTCTACTG 58.058 38.462 0.00 0.00 0.00 2.74
2809 4677 5.063564 GCTACATAACCTTCTACTGTGCAAC 59.936 44.000 0.00 0.00 37.35 4.17
3011 4879 2.433318 GCTGTGAGCGACCCAGAC 60.433 66.667 0.00 0.00 0.00 3.51
3025 4896 2.024655 ACCCAGACGATCCTACACCTTA 60.025 50.000 0.00 0.00 0.00 2.69
3041 4912 3.317711 CACCTTAACATCACCACAGCAAA 59.682 43.478 0.00 0.00 0.00 3.68
3058 4929 3.681897 AGCAAAATCGACAGTCTCATCAC 59.318 43.478 0.00 0.00 0.00 3.06
3334 5221 3.866582 CCCGGGATGGAGCCTGTC 61.867 72.222 18.48 0.00 42.00 3.51
3505 5393 1.277557 GCATGTCCATCCTAGCTAGGG 59.722 57.143 34.43 21.52 43.79 3.53
3528 5416 6.267928 GGGTAGTTATAAGATGGCTGAAGAGA 59.732 42.308 0.00 0.00 0.00 3.10
3570 5458 8.998814 TGATTAGATGTAATAAGTTTGGAGGGA 58.001 33.333 0.00 0.00 0.00 4.20
3605 5493 4.462483 GTGAAACAAGAGGCAATGGGAATA 59.538 41.667 0.00 0.00 36.32 1.75
3632 5520 2.550830 TCCTGGTTTCTTCTGAGTGC 57.449 50.000 0.00 0.00 0.00 4.40
3658 5547 3.320541 TGTTTTCTTGTAATGGTGGCAGG 59.679 43.478 0.00 0.00 0.00 4.85
3671 5561 1.478105 GTGGCAGGCAAAAAGATAGGG 59.522 52.381 0.00 0.00 0.00 3.53
3700 5590 0.107752 CCTTCAGCCTCAGAGCCTTC 60.108 60.000 0.00 0.00 0.00 3.46
3723 5613 2.310538 GCCTTGGATGGGAAACATAGG 58.689 52.381 0.00 0.00 40.72 2.57
3724 5614 2.091885 GCCTTGGATGGGAAACATAGGA 60.092 50.000 0.00 0.00 40.72 2.94
3725 5615 3.825328 CCTTGGATGGGAAACATAGGAG 58.175 50.000 0.00 0.00 40.72 3.69
3726 5616 3.435601 CCTTGGATGGGAAACATAGGAGG 60.436 52.174 0.00 0.00 40.72 4.30
3727 5617 3.144068 TGGATGGGAAACATAGGAGGA 57.856 47.619 0.00 0.00 40.72 3.71
3728 5618 3.680169 TGGATGGGAAACATAGGAGGAT 58.320 45.455 0.00 0.00 40.72 3.24
3729 5619 3.652869 TGGATGGGAAACATAGGAGGATC 59.347 47.826 0.00 0.00 40.72 3.36
3834 5724 1.915078 AAGGCTAGCAACGGAGGCAT 61.915 55.000 18.24 0.00 40.58 4.40
3862 5752 6.183360 GCGGTTCAAACTAATAGATTTCGTCA 60.183 38.462 0.00 0.00 0.00 4.35
3881 5771 1.142688 ACATTCCAGGCCTCACCCTT 61.143 55.000 0.00 0.00 40.58 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.039159 GGAAACATGGCAATTTTCTGGAAAAA 59.961 34.615 18.32 0.00 42.71 1.94
3 4 5.530543 GGAAACATGGCAATTTTCTGGAAAA 59.469 36.000 18.32 10.33 43.48 2.29
4 5 5.062528 GGAAACATGGCAATTTTCTGGAAA 58.937 37.500 18.32 0.00 31.21 3.13
5 6 4.504689 GGGAAACATGGCAATTTTCTGGAA 60.505 41.667 18.32 0.00 31.21 3.53
6 7 3.007831 GGGAAACATGGCAATTTTCTGGA 59.992 43.478 18.32 0.00 31.21 3.86
7 8 3.008266 AGGGAAACATGGCAATTTTCTGG 59.992 43.478 18.32 0.00 31.21 3.86
8 9 4.276058 AGGGAAACATGGCAATTTTCTG 57.724 40.909 18.32 3.57 31.21 3.02
9 10 6.441604 AGATTAGGGAAACATGGCAATTTTCT 59.558 34.615 18.32 13.01 31.21 2.52
10 11 6.643388 AGATTAGGGAAACATGGCAATTTTC 58.357 36.000 13.20 13.20 0.00 2.29
11 12 6.213195 TGAGATTAGGGAAACATGGCAATTTT 59.787 34.615 0.00 0.00 0.00 1.82
12 13 5.721000 TGAGATTAGGGAAACATGGCAATTT 59.279 36.000 0.00 0.00 0.00 1.82
13 14 5.127682 GTGAGATTAGGGAAACATGGCAATT 59.872 40.000 0.00 0.00 0.00 2.32
14 15 4.646492 GTGAGATTAGGGAAACATGGCAAT 59.354 41.667 0.00 0.00 0.00 3.56
15 16 4.016444 GTGAGATTAGGGAAACATGGCAA 58.984 43.478 0.00 0.00 0.00 4.52
16 17 3.620488 GTGAGATTAGGGAAACATGGCA 58.380 45.455 0.00 0.00 0.00 4.92
17 18 2.614057 CGTGAGATTAGGGAAACATGGC 59.386 50.000 0.00 0.00 0.00 4.40
18 19 3.873910 ACGTGAGATTAGGGAAACATGG 58.126 45.455 0.00 0.00 0.00 3.66
19 20 6.594159 AGTTTACGTGAGATTAGGGAAACATG 59.406 38.462 0.00 0.00 40.15 3.21
20 21 6.708285 AGTTTACGTGAGATTAGGGAAACAT 58.292 36.000 0.00 0.00 40.15 2.71
21 22 6.105397 AGTTTACGTGAGATTAGGGAAACA 57.895 37.500 0.00 0.00 40.15 2.83
22 23 8.438513 GTTTAGTTTACGTGAGATTAGGGAAAC 58.561 37.037 0.00 0.00 38.76 2.78
23 24 8.370182 AGTTTAGTTTACGTGAGATTAGGGAAA 58.630 33.333 0.00 0.00 0.00 3.13
24 25 7.899973 AGTTTAGTTTACGTGAGATTAGGGAA 58.100 34.615 0.00 0.00 0.00 3.97
25 26 7.472334 AGTTTAGTTTACGTGAGATTAGGGA 57.528 36.000 0.00 0.00 0.00 4.20
26 27 7.064253 CCAAGTTTAGTTTACGTGAGATTAGGG 59.936 40.741 0.00 0.00 0.00 3.53
27 28 7.412672 GCCAAGTTTAGTTTACGTGAGATTAGG 60.413 40.741 0.00 0.00 0.00 2.69
28 29 7.117236 TGCCAAGTTTAGTTTACGTGAGATTAG 59.883 37.037 0.00 0.00 0.00 1.73
29 30 6.930164 TGCCAAGTTTAGTTTACGTGAGATTA 59.070 34.615 0.00 0.00 0.00 1.75
30 31 5.761234 TGCCAAGTTTAGTTTACGTGAGATT 59.239 36.000 0.00 0.00 0.00 2.40
31 32 5.302360 TGCCAAGTTTAGTTTACGTGAGAT 58.698 37.500 0.00 0.00 0.00 2.75
32 33 4.695396 TGCCAAGTTTAGTTTACGTGAGA 58.305 39.130 0.00 0.00 0.00 3.27
33 34 5.408604 AGATGCCAAGTTTAGTTTACGTGAG 59.591 40.000 0.00 0.00 0.00 3.51
34 35 5.302360 AGATGCCAAGTTTAGTTTACGTGA 58.698 37.500 0.00 0.00 0.00 4.35
35 36 5.607119 AGATGCCAAGTTTAGTTTACGTG 57.393 39.130 0.00 0.00 0.00 4.49
36 37 7.733402 TTTAGATGCCAAGTTTAGTTTACGT 57.267 32.000 0.00 0.00 0.00 3.57
37 38 8.665685 AGATTTAGATGCCAAGTTTAGTTTACG 58.334 33.333 0.00 0.00 0.00 3.18
38 39 9.774742 CAGATTTAGATGCCAAGTTTAGTTTAC 57.225 33.333 0.00 0.00 0.00 2.01
39 40 9.515226 ACAGATTTAGATGCCAAGTTTAGTTTA 57.485 29.630 0.00 0.00 0.00 2.01
40 41 8.409358 ACAGATTTAGATGCCAAGTTTAGTTT 57.591 30.769 0.00 0.00 0.00 2.66
41 42 8.409358 AACAGATTTAGATGCCAAGTTTAGTT 57.591 30.769 0.00 0.00 0.00 2.24
42 43 8.299570 CAAACAGATTTAGATGCCAAGTTTAGT 58.700 33.333 0.00 0.00 0.00 2.24
43 44 7.756722 CCAAACAGATTTAGATGCCAAGTTTAG 59.243 37.037 0.00 0.00 0.00 1.85
44 45 7.309744 CCCAAACAGATTTAGATGCCAAGTTTA 60.310 37.037 0.00 0.00 0.00 2.01
45 46 6.458210 CCAAACAGATTTAGATGCCAAGTTT 58.542 36.000 0.00 0.00 0.00 2.66
46 47 5.047092 CCCAAACAGATTTAGATGCCAAGTT 60.047 40.000 0.00 0.00 0.00 2.66
47 48 4.463891 CCCAAACAGATTTAGATGCCAAGT 59.536 41.667 0.00 0.00 0.00 3.16
48 49 4.463891 ACCCAAACAGATTTAGATGCCAAG 59.536 41.667 0.00 0.00 0.00 3.61
49 50 4.415596 ACCCAAACAGATTTAGATGCCAA 58.584 39.130 0.00 0.00 0.00 4.52
50 51 4.046286 ACCCAAACAGATTTAGATGCCA 57.954 40.909 0.00 0.00 0.00 4.92
51 52 4.747810 CAACCCAAACAGATTTAGATGCC 58.252 43.478 0.00 0.00 0.00 4.40
52 53 4.176271 GCAACCCAAACAGATTTAGATGC 58.824 43.478 0.00 0.00 0.00 3.91
53 54 4.220382 TGGCAACCCAAACAGATTTAGATG 59.780 41.667 0.00 0.00 38.46 2.90
54 55 4.415596 TGGCAACCCAAACAGATTTAGAT 58.584 39.130 0.00 0.00 38.46 1.98
55 56 3.838565 TGGCAACCCAAACAGATTTAGA 58.161 40.909 0.00 0.00 38.46 2.10
56 57 4.497300 CATGGCAACCCAAACAGATTTAG 58.503 43.478 0.00 0.00 46.14 1.85
57 58 3.306641 GCATGGCAACCCAAACAGATTTA 60.307 43.478 0.00 0.00 46.14 1.40
58 59 2.550639 GCATGGCAACCCAAACAGATTT 60.551 45.455 0.00 0.00 46.14 2.17
59 60 1.002315 GCATGGCAACCCAAACAGATT 59.998 47.619 0.00 0.00 46.14 2.40
60 61 0.609662 GCATGGCAACCCAAACAGAT 59.390 50.000 0.00 0.00 46.14 2.90
61 62 0.469705 AGCATGGCAACCCAAACAGA 60.470 50.000 0.00 0.00 46.14 3.41
62 63 0.393820 AAGCATGGCAACCCAAACAG 59.606 50.000 0.00 0.00 46.14 3.16
63 64 1.709578 TAAGCATGGCAACCCAAACA 58.290 45.000 0.00 0.00 46.14 2.83
64 65 2.037121 AGTTAAGCATGGCAACCCAAAC 59.963 45.455 0.00 0.00 46.14 2.93
65 66 2.298729 GAGTTAAGCATGGCAACCCAAA 59.701 45.455 0.00 0.00 46.14 3.28
66 67 1.892474 GAGTTAAGCATGGCAACCCAA 59.108 47.619 0.00 0.00 46.14 4.12
68 69 0.817654 GGAGTTAAGCATGGCAACCC 59.182 55.000 0.00 0.00 0.00 4.11
69 70 0.817654 GGGAGTTAAGCATGGCAACC 59.182 55.000 0.00 0.00 0.00 3.77
70 71 0.451783 CGGGAGTTAAGCATGGCAAC 59.548 55.000 0.00 0.00 0.00 4.17
71 72 0.679640 CCGGGAGTTAAGCATGGCAA 60.680 55.000 0.00 0.00 0.00 4.52
72 73 1.077787 CCGGGAGTTAAGCATGGCA 60.078 57.895 0.00 0.00 0.00 4.92
73 74 0.815615 CTCCGGGAGTTAAGCATGGC 60.816 60.000 16.15 0.00 0.00 4.40
74 75 0.541863 ACTCCGGGAGTTAAGCATGG 59.458 55.000 23.90 0.00 40.28 3.66
83 84 2.626743 CGGTAATGATAACTCCGGGAGT 59.373 50.000 23.90 23.90 45.64 3.85
84 85 2.626743 ACGGTAATGATAACTCCGGGAG 59.373 50.000 22.40 22.40 44.54 4.30
85 86 2.669781 ACGGTAATGATAACTCCGGGA 58.330 47.619 0.00 0.00 44.54 5.14
86 87 4.038402 AGTTACGGTAATGATAACTCCGGG 59.962 45.833 0.00 0.00 44.54 5.73
87 88 5.192327 AGTTACGGTAATGATAACTCCGG 57.808 43.478 3.59 0.00 44.54 5.14
88 89 7.529880 AAAAGTTACGGTAATGATAACTCCG 57.470 36.000 3.59 0.00 45.53 4.63
89 90 8.724229 ACAAAAAGTTACGGTAATGATAACTCC 58.276 33.333 3.59 0.00 38.01 3.85
92 93 9.759259 GGTACAAAAAGTTACGGTAATGATAAC 57.241 33.333 3.59 0.00 0.00 1.89
93 94 8.655092 CGGTACAAAAAGTTACGGTAATGATAA 58.345 33.333 3.59 0.00 0.00 1.75
94 95 7.816995 ACGGTACAAAAAGTTACGGTAATGATA 59.183 33.333 3.59 0.00 33.98 2.15
95 96 6.650390 ACGGTACAAAAAGTTACGGTAATGAT 59.350 34.615 3.59 0.00 33.98 2.45
96 97 5.988561 ACGGTACAAAAAGTTACGGTAATGA 59.011 36.000 3.59 0.00 33.98 2.57
97 98 6.072733 CACGGTACAAAAAGTTACGGTAATG 58.927 40.000 3.59 0.71 33.98 1.90
98 99 5.757808 ACACGGTACAAAAAGTTACGGTAAT 59.242 36.000 3.59 0.00 33.98 1.89
99 100 5.112686 ACACGGTACAAAAAGTTACGGTAA 58.887 37.500 0.00 0.00 33.98 2.85
100 101 4.688021 ACACGGTACAAAAAGTTACGGTA 58.312 39.130 0.00 0.00 33.98 4.02
101 102 3.530535 ACACGGTACAAAAAGTTACGGT 58.469 40.909 0.00 0.00 33.98 4.83
102 103 3.555139 TGACACGGTACAAAAAGTTACGG 59.445 43.478 0.00 0.00 33.98 4.02
103 104 4.775440 TGACACGGTACAAAAAGTTACG 57.225 40.909 0.00 0.00 35.25 3.18
104 105 7.793907 TTTTTGACACGGTACAAAAAGTTAC 57.206 32.000 22.18 0.00 44.96 2.50
128 129 8.899771 CCCTCCTTATCAAATTACAATACGTTT 58.100 33.333 0.00 0.00 0.00 3.60
129 130 8.269317 TCCCTCCTTATCAAATTACAATACGTT 58.731 33.333 0.00 0.00 0.00 3.99
130 131 7.798071 TCCCTCCTTATCAAATTACAATACGT 58.202 34.615 0.00 0.00 0.00 3.57
131 132 7.931948 ACTCCCTCCTTATCAAATTACAATACG 59.068 37.037 0.00 0.00 0.00 3.06
136 137 9.847224 GAAATACTCCCTCCTTATCAAATTACA 57.153 33.333 0.00 0.00 0.00 2.41
137 138 9.847224 TGAAATACTCCCTCCTTATCAAATTAC 57.153 33.333 0.00 0.00 0.00 1.89
138 139 9.847224 GTGAAATACTCCCTCCTTATCAAATTA 57.153 33.333 0.00 0.00 0.00 1.40
139 140 8.560903 AGTGAAATACTCCCTCCTTATCAAATT 58.439 33.333 0.00 0.00 33.17 1.82
140 141 7.995488 CAGTGAAATACTCCCTCCTTATCAAAT 59.005 37.037 0.00 0.00 37.60 2.32
141 142 7.037586 ACAGTGAAATACTCCCTCCTTATCAAA 60.038 37.037 0.00 0.00 37.60 2.69
142 143 6.443849 ACAGTGAAATACTCCCTCCTTATCAA 59.556 38.462 0.00 0.00 37.60 2.57
143 144 5.964477 ACAGTGAAATACTCCCTCCTTATCA 59.036 40.000 0.00 0.00 37.60 2.15
144 145 6.127026 ACACAGTGAAATACTCCCTCCTTATC 60.127 42.308 7.81 0.00 37.60 1.75
145 146 5.726793 ACACAGTGAAATACTCCCTCCTTAT 59.273 40.000 7.81 0.00 37.60 1.73
146 147 5.091552 ACACAGTGAAATACTCCCTCCTTA 58.908 41.667 7.81 0.00 37.60 2.69
147 148 3.910627 ACACAGTGAAATACTCCCTCCTT 59.089 43.478 7.81 0.00 37.60 3.36
148 149 3.521727 ACACAGTGAAATACTCCCTCCT 58.478 45.455 7.81 0.00 37.60 3.69
149 150 3.983044 ACACAGTGAAATACTCCCTCC 57.017 47.619 7.81 0.00 37.60 4.30
150 151 6.294010 GGAAAAACACAGTGAAATACTCCCTC 60.294 42.308 7.81 0.00 37.60 4.30
151 152 5.535030 GGAAAAACACAGTGAAATACTCCCT 59.465 40.000 7.81 0.00 37.60 4.20
152 153 5.300792 TGGAAAAACACAGTGAAATACTCCC 59.699 40.000 7.81 0.00 37.60 4.30
153 154 6.039382 AGTGGAAAAACACAGTGAAATACTCC 59.961 38.462 7.81 5.97 43.72 3.85
154 155 7.027778 AGTGGAAAAACACAGTGAAATACTC 57.972 36.000 7.81 0.00 43.72 2.59
155 156 8.691661 ATAGTGGAAAAACACAGTGAAATACT 57.308 30.769 7.81 4.94 43.72 2.12
159 160 9.126151 TGATTATAGTGGAAAAACACAGTGAAA 57.874 29.630 7.81 0.00 43.72 2.69
160 161 8.684386 TGATTATAGTGGAAAAACACAGTGAA 57.316 30.769 7.81 0.00 43.72 3.18
161 162 8.729756 CATGATTATAGTGGAAAAACACAGTGA 58.270 33.333 7.81 0.00 43.72 3.41
162 163 7.970061 CCATGATTATAGTGGAAAAACACAGTG 59.030 37.037 0.00 0.00 43.72 3.66
163 164 7.888021 TCCATGATTATAGTGGAAAAACACAGT 59.112 33.333 0.00 0.00 43.72 3.55
164 165 8.279970 TCCATGATTATAGTGGAAAAACACAG 57.720 34.615 0.00 0.00 43.72 3.66
165 166 8.821686 ATCCATGATTATAGTGGAAAAACACA 57.178 30.769 0.00 0.00 44.55 3.72
166 167 9.125026 AGATCCATGATTATAGTGGAAAAACAC 57.875 33.333 0.00 0.00 44.55 3.32
169 170 9.793259 GGTAGATCCATGATTATAGTGGAAAAA 57.207 33.333 0.00 0.00 44.55 1.94
170 171 8.383175 GGGTAGATCCATGATTATAGTGGAAAA 58.617 37.037 0.00 0.00 44.55 2.29
171 172 7.515861 TGGGTAGATCCATGATTATAGTGGAAA 59.484 37.037 0.00 0.00 44.55 3.13
172 173 7.022496 TGGGTAGATCCATGATTATAGTGGAA 58.978 38.462 0.00 0.00 44.55 3.53
173 174 6.440647 GTGGGTAGATCCATGATTATAGTGGA 59.559 42.308 0.00 1.38 45.37 4.02
174 175 6.441924 AGTGGGTAGATCCATGATTATAGTGG 59.558 42.308 0.00 0.00 39.26 4.00
175 176 7.487822 AGTGGGTAGATCCATGATTATAGTG 57.512 40.000 0.00 0.00 39.26 2.74
180 181 9.782900 TGATTATAGTGGGTAGATCCATGATTA 57.217 33.333 0.00 0.00 39.26 1.75
181 182 8.685257 TGATTATAGTGGGTAGATCCATGATT 57.315 34.615 0.00 0.00 39.26 2.57
182 183 8.712103 CATGATTATAGTGGGTAGATCCATGAT 58.288 37.037 0.00 0.00 39.26 2.45
183 184 7.679881 ACATGATTATAGTGGGTAGATCCATGA 59.320 37.037 0.00 0.00 39.26 3.07
184 185 7.855375 ACATGATTATAGTGGGTAGATCCATG 58.145 38.462 0.00 0.00 39.26 3.66
185 186 7.147828 CGACATGATTATAGTGGGTAGATCCAT 60.148 40.741 0.00 0.00 39.26 3.41
186 187 6.152831 CGACATGATTATAGTGGGTAGATCCA 59.847 42.308 0.00 0.00 38.11 3.41
187 188 6.153000 ACGACATGATTATAGTGGGTAGATCC 59.847 42.308 0.00 0.00 0.00 3.36
188 189 7.159322 ACGACATGATTATAGTGGGTAGATC 57.841 40.000 0.00 0.00 0.00 2.75
189 190 6.153000 GGACGACATGATTATAGTGGGTAGAT 59.847 42.308 0.00 0.00 0.00 1.98
190 191 5.475909 GGACGACATGATTATAGTGGGTAGA 59.524 44.000 0.00 0.00 0.00 2.59
191 192 5.619309 CGGACGACATGATTATAGTGGGTAG 60.619 48.000 0.00 0.00 0.00 3.18
228 229 3.440173 AGTACCATTCTTGATGCAAACCG 59.560 43.478 0.00 0.00 34.25 4.44
230 231 4.168760 GCAGTACCATTCTTGATGCAAAC 58.831 43.478 0.00 0.00 34.25 2.93
242 243 2.159382 CACGAAAAGGGCAGTACCATT 58.841 47.619 0.00 0.00 46.80 3.16
244 245 0.470766 ACACGAAAAGGGCAGTACCA 59.529 50.000 0.00 0.00 42.05 3.25
247 248 3.688694 ACATACACGAAAAGGGCAGTA 57.311 42.857 0.00 0.00 0.00 2.74
250 251 2.550606 GACAACATACACGAAAAGGGCA 59.449 45.455 0.00 0.00 0.00 5.36
251 252 2.412325 CGACAACATACACGAAAAGGGC 60.412 50.000 0.00 0.00 0.00 5.19
252 253 3.061322 TCGACAACATACACGAAAAGGG 58.939 45.455 0.00 0.00 0.00 3.95
253 254 4.201685 GGATCGACAACATACACGAAAAGG 60.202 45.833 0.00 0.00 38.22 3.11
254 255 4.387559 TGGATCGACAACATACACGAAAAG 59.612 41.667 0.00 0.00 38.22 2.27
255 256 4.308265 TGGATCGACAACATACACGAAAA 58.692 39.130 0.00 0.00 38.22 2.29
256 257 3.915536 TGGATCGACAACATACACGAAA 58.084 40.909 0.00 0.00 38.22 3.46
257 258 3.579335 TGGATCGACAACATACACGAA 57.421 42.857 0.00 0.00 38.22 3.85
258 259 3.579335 TTGGATCGACAACATACACGA 57.421 42.857 0.00 0.00 39.01 4.35
259 260 3.924073 TCTTTGGATCGACAACATACACG 59.076 43.478 0.00 0.00 0.00 4.49
260 261 5.351465 ACATCTTTGGATCGACAACATACAC 59.649 40.000 0.00 0.00 0.00 2.90
261 262 5.487433 ACATCTTTGGATCGACAACATACA 58.513 37.500 0.00 0.00 0.00 2.29
262 263 6.757010 AGTACATCTTTGGATCGACAACATAC 59.243 38.462 0.00 0.00 0.00 2.39
263 264 6.756542 CAGTACATCTTTGGATCGACAACATA 59.243 38.462 0.00 0.00 0.00 2.29
264 265 5.582269 CAGTACATCTTTGGATCGACAACAT 59.418 40.000 0.00 0.00 0.00 2.71
265 266 4.929211 CAGTACATCTTTGGATCGACAACA 59.071 41.667 0.00 0.00 0.00 3.33
266 267 4.201724 GCAGTACATCTTTGGATCGACAAC 60.202 45.833 0.00 0.00 0.00 3.32
267 268 3.932710 GCAGTACATCTTTGGATCGACAA 59.067 43.478 0.00 0.00 0.00 3.18
268 269 3.195610 AGCAGTACATCTTTGGATCGACA 59.804 43.478 0.00 0.00 0.00 4.35
269 270 3.553511 CAGCAGTACATCTTTGGATCGAC 59.446 47.826 0.00 0.00 0.00 4.20
270 271 3.430790 CCAGCAGTACATCTTTGGATCGA 60.431 47.826 0.00 0.00 32.91 3.59
271 272 2.868583 CCAGCAGTACATCTTTGGATCG 59.131 50.000 0.00 0.00 32.91 3.69
272 273 4.142609 TCCAGCAGTACATCTTTGGATC 57.857 45.455 0.00 0.00 34.44 3.36
273 274 4.785346 ATCCAGCAGTACATCTTTGGAT 57.215 40.909 9.99 9.99 40.38 3.41
301 302 7.147794 TGCATGCTCCATGATCTTTAATTCTTT 60.148 33.333 20.33 0.00 43.81 2.52
303 304 5.831525 TGCATGCTCCATGATCTTTAATTCT 59.168 36.000 20.33 0.00 43.81 2.40
304 305 6.080648 TGCATGCTCCATGATCTTTAATTC 57.919 37.500 20.33 0.00 43.81 2.17
305 306 5.597182 ACTGCATGCTCCATGATCTTTAATT 59.403 36.000 20.33 0.00 43.81 1.40
306 307 5.009710 CACTGCATGCTCCATGATCTTTAAT 59.990 40.000 20.33 0.00 43.81 1.40
307 308 4.337274 CACTGCATGCTCCATGATCTTTAA 59.663 41.667 20.33 0.00 43.81 1.52
334 335 2.017668 ATTGGACCCACCTTGCACCA 62.018 55.000 0.00 0.00 39.86 4.17
336 337 1.250840 GGATTGGACCCACCTTGCAC 61.251 60.000 0.00 0.00 39.86 4.57
337 338 1.076549 GGATTGGACCCACCTTGCA 59.923 57.895 0.00 0.00 39.86 4.08
340 341 1.384191 GCTGGATTGGACCCACCTT 59.616 57.895 0.00 0.00 39.86 3.50
341 342 2.616458 GGCTGGATTGGACCCACCT 61.616 63.158 0.00 0.00 39.86 4.00
342 343 2.043953 GGCTGGATTGGACCCACC 60.044 66.667 0.00 0.00 39.54 4.61
343 344 2.043953 GGGCTGGATTGGACCCAC 60.044 66.667 0.00 0.00 42.33 4.61
346 347 3.728373 ACGGGGCTGGATTGGACC 61.728 66.667 0.00 0.00 0.00 4.46
347 348 2.438434 CACGGGGCTGGATTGGAC 60.438 66.667 0.00 0.00 0.00 4.02
348 349 3.727258 CCACGGGGCTGGATTGGA 61.727 66.667 0.00 0.00 32.30 3.53
358 359 2.878406 CAGTAAATATGAAGCCACGGGG 59.122 50.000 0.00 0.00 37.18 5.73
359 360 2.290641 GCAGTAAATATGAAGCCACGGG 59.709 50.000 0.00 0.00 0.00 5.28
360 361 3.206150 AGCAGTAAATATGAAGCCACGG 58.794 45.455 0.00 0.00 0.00 4.94
361 362 3.248602 GGAGCAGTAAATATGAAGCCACG 59.751 47.826 0.00 0.00 0.00 4.94
362 363 4.455606 AGGAGCAGTAAATATGAAGCCAC 58.544 43.478 0.00 0.00 0.00 5.01
363 364 4.778213 AGGAGCAGTAAATATGAAGCCA 57.222 40.909 0.00 0.00 0.00 4.75
364 365 4.693095 GCTAGGAGCAGTAAATATGAAGCC 59.307 45.833 0.00 0.00 41.89 4.35
365 366 5.546526 AGCTAGGAGCAGTAAATATGAAGC 58.453 41.667 0.64 0.00 45.56 3.86
366 367 9.796120 GTATAGCTAGGAGCAGTAAATATGAAG 57.204 37.037 0.00 0.00 45.56 3.02
367 368 8.750298 GGTATAGCTAGGAGCAGTAAATATGAA 58.250 37.037 0.00 0.00 45.56 2.57
368 369 7.893833 TGGTATAGCTAGGAGCAGTAAATATGA 59.106 37.037 0.00 0.00 45.56 2.15
369 370 8.067751 TGGTATAGCTAGGAGCAGTAAATATG 57.932 38.462 0.00 0.00 45.56 1.78
370 371 8.846423 ATGGTATAGCTAGGAGCAGTAAATAT 57.154 34.615 13.76 0.00 45.56 1.28
384 385 1.351017 GGCTGCCCAATGGTATAGCTA 59.649 52.381 7.66 0.00 36.28 3.32
385 386 0.111253 GGCTGCCCAATGGTATAGCT 59.889 55.000 7.66 0.00 36.28 3.32
386 387 0.111253 AGGCTGCCCAATGGTATAGC 59.889 55.000 16.57 10.06 35.69 2.97
387 388 2.233271 CAAGGCTGCCCAATGGTATAG 58.767 52.381 16.57 0.00 0.00 1.31
388 389 1.753847 GCAAGGCTGCCCAATGGTATA 60.754 52.381 16.57 0.00 43.26 1.47
389 390 1.044790 GCAAGGCTGCCCAATGGTAT 61.045 55.000 16.57 0.00 43.26 2.73
391 392 2.999063 GCAAGGCTGCCCAATGGT 60.999 61.111 16.57 0.00 43.26 3.55
400 401 2.125350 GGAGGACGAGCAAGGCTG 60.125 66.667 0.00 0.00 39.88 4.85
401 402 2.284258 AGGAGGACGAGCAAGGCT 60.284 61.111 0.00 0.00 43.88 4.58
402 403 2.125350 CAGGAGGACGAGCAAGGC 60.125 66.667 0.00 0.00 0.00 4.35
420 422 4.204028 GGTGGGTGGTGCAGTGGT 62.204 66.667 0.00 0.00 0.00 4.16
476 481 3.535629 TTGACTGGGCGCAGGACAG 62.536 63.158 31.41 14.07 38.19 3.51
477 482 2.616797 TTTTGACTGGGCGCAGGACA 62.617 55.000 31.41 26.08 0.00 4.02
478 483 1.244019 ATTTTGACTGGGCGCAGGAC 61.244 55.000 31.41 24.13 0.00 3.85
479 484 0.960364 GATTTTGACTGGGCGCAGGA 60.960 55.000 31.41 16.81 0.00 3.86
480 485 1.508088 GATTTTGACTGGGCGCAGG 59.492 57.895 31.41 15.58 0.00 4.85
481 486 1.135315 CGATTTTGACTGGGCGCAG 59.865 57.895 27.57 27.57 0.00 5.18
482 487 2.976840 GCGATTTTGACTGGGCGCA 61.977 57.895 10.83 2.47 43.45 6.09
483 488 2.202479 GCGATTTTGACTGGGCGC 60.202 61.111 0.00 0.00 37.60 6.53
484 489 2.098298 CGCGATTTTGACTGGGCG 59.902 61.111 0.00 0.00 37.56 6.13
485 490 1.366111 TAGCGCGATTTTGACTGGGC 61.366 55.000 12.10 0.00 40.20 5.36
557 565 1.094073 ATTGTCGAGCTGCTCCATGC 61.094 55.000 22.97 11.31 43.25 4.06
559 567 0.463295 CCATTGTCGAGCTGCTCCAT 60.463 55.000 22.97 8.06 0.00 3.41
613 633 2.484062 TTACCGGCCTCGATCCGTC 61.484 63.158 20.24 0.00 45.09 4.79
614 634 2.440796 TTACCGGCCTCGATCCGT 60.441 61.111 20.24 12.96 45.09 4.69
615 635 2.027169 GTTACCGGCCTCGATCCG 59.973 66.667 16.54 16.54 46.05 4.18
616 636 2.420466 GGTTACCGGCCTCGATCC 59.580 66.667 0.00 0.00 39.00 3.36
617 637 2.027169 CGGTTACCGGCCTCGATC 59.973 66.667 17.00 0.00 44.15 3.69
627 647 4.078516 ACTGCCCGCTCGGTTACC 62.079 66.667 7.59 0.00 0.00 2.85
628 648 2.813908 CACTGCCCGCTCGGTTAC 60.814 66.667 7.59 0.00 0.00 2.50
629 649 2.992689 TCACTGCCCGCTCGGTTA 60.993 61.111 7.59 0.00 0.00 2.85
630 650 4.379243 CTCACTGCCCGCTCGGTT 62.379 66.667 7.59 0.00 0.00 4.44
634 654 3.941657 GACCACTCACTGCCCGCTC 62.942 68.421 0.00 0.00 0.00 5.03
635 655 4.008933 GACCACTCACTGCCCGCT 62.009 66.667 0.00 0.00 0.00 5.52
642 662 1.338337 CACTTCACTCGACCACTCACT 59.662 52.381 0.00 0.00 0.00 3.41
644 664 0.673985 CCACTTCACTCGACCACTCA 59.326 55.000 0.00 0.00 0.00 3.41
645 665 0.667792 GCCACTTCACTCGACCACTC 60.668 60.000 0.00 0.00 0.00 3.51
648 668 2.338620 CGCCACTTCACTCGACCA 59.661 61.111 0.00 0.00 0.00 4.02
650 670 3.112709 GGCGCCACTTCACTCGAC 61.113 66.667 24.80 0.00 0.00 4.20
680 700 4.773117 GTCCGTCCGTCCGACAGC 62.773 72.222 0.00 0.00 42.07 4.40
751 785 0.116541 AGAGAGGGAGGGAAACGGAA 59.883 55.000 0.00 0.00 0.00 4.30
755 789 1.491668 GGAGAGAGAGGGAGGGAAAC 58.508 60.000 0.00 0.00 0.00 2.78
756 790 0.340208 GGGAGAGAGAGGGAGGGAAA 59.660 60.000 0.00 0.00 0.00 3.13
757 791 0.556380 AGGGAGAGAGAGGGAGGGAA 60.556 60.000 0.00 0.00 0.00 3.97
758 792 0.996762 GAGGGAGAGAGAGGGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
759 793 0.998945 AGAGGGAGAGAGAGGGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
760 794 0.478507 GAGAGGGAGAGAGAGGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
761 795 0.478507 GGAGAGGGAGAGAGAGGGAG 59.521 65.000 0.00 0.00 0.00 4.30
762 796 0.996762 GGGAGAGGGAGAGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
763 797 0.998945 AGGGAGAGGGAGAGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
764 798 0.185901 CAGGGAGAGGGAGAGAGAGG 59.814 65.000 0.00 0.00 0.00 3.69
765 799 0.468029 GCAGGGAGAGGGAGAGAGAG 60.468 65.000 0.00 0.00 0.00 3.20
766 800 1.618030 GCAGGGAGAGGGAGAGAGA 59.382 63.158 0.00 0.00 0.00 3.10
767 801 1.827789 CGCAGGGAGAGGGAGAGAG 60.828 68.421 0.00 0.00 0.00 3.20
768 802 2.277072 CGCAGGGAGAGGGAGAGA 59.723 66.667 0.00 0.00 0.00 3.10
857 901 1.789078 GCAATGGCGCTCGATGGATT 61.789 55.000 7.64 0.00 0.00 3.01
942 996 0.808125 CTCTCCACTCACTCCACTCG 59.192 60.000 0.00 0.00 0.00 4.18
969 1023 0.251742 ACAGAGCAGAGCAGAGGTCT 60.252 55.000 0.00 0.00 42.80 3.85
1408 1481 3.235481 TTGGCAAGGGTCGGTCGA 61.235 61.111 0.00 0.00 0.00 4.20
1430 1503 3.515104 GCAAATCAAAGGGGAATTCCAGA 59.485 43.478 25.67 14.41 37.91 3.86
1446 1519 1.431036 GGCGAGAAGGCTGCAAATC 59.569 57.895 0.50 0.00 42.90 2.17
1447 1520 2.401766 CGGCGAGAAGGCTGCAAAT 61.402 57.895 0.00 0.00 44.22 2.32
1448 1521 3.049674 CGGCGAGAAGGCTGCAAA 61.050 61.111 0.00 0.00 44.22 3.68
1651 1727 1.203622 AGGAAGGAGGGGAAGGTTCAT 60.204 52.381 0.00 0.00 0.00 2.57
1656 1732 0.617820 TCGAAGGAAGGAGGGGAAGG 60.618 60.000 0.00 0.00 0.00 3.46
1663 1739 3.055819 TGGAATGAACTCGAAGGAAGGAG 60.056 47.826 0.00 0.00 36.36 3.69
1680 1756 5.500234 TCTTCAGAACCGAAATCATGGAAT 58.500 37.500 0.00 0.00 0.00 3.01
1768 3597 4.617520 TTGAGCGCGTTCAGGCCA 62.618 61.111 24.49 8.36 0.00 5.36
1771 3600 3.777925 CCGTTGAGCGCGTTCAGG 61.778 66.667 24.49 19.47 39.71 3.86
1932 3761 2.135933 GTTCAGTGTGGAGTTTCTCGG 58.864 52.381 0.00 0.00 0.00 4.63
2039 3870 3.984200 GACGTACTGAGCCACGCCC 62.984 68.421 7.05 0.00 41.80 6.13
2191 4022 1.207593 GTCACCACGTTGAGCATGC 59.792 57.895 10.51 10.51 0.00 4.06
2274 4105 4.948608 TTCTGTAAAATGCGCCGAATTA 57.051 36.364 4.18 0.00 0.00 1.40
2320 4152 0.899720 GTCCAGGACCGGTTCATGTA 59.100 55.000 17.22 0.00 33.95 2.29
2402 4246 1.289380 GAGCGTCTTCGGGTTGAGT 59.711 57.895 0.00 0.00 37.56 3.41
2510 4354 1.073763 TGATGCCCACTGTTGTAAGCT 59.926 47.619 0.00 0.00 0.00 3.74
2572 4416 7.553402 CACTGAATTTCCATCTCAAGAATCTCT 59.447 37.037 0.00 0.00 0.00 3.10
2611 4458 3.012518 CAACCCTGATAAGAACAGCCTG 58.987 50.000 0.00 0.00 34.47 4.85
2625 4472 1.408702 CTGGAAACCACAACAACCCTG 59.591 52.381 0.00 0.00 0.00 4.45
2626 4473 1.687996 CCTGGAAACCACAACAACCCT 60.688 52.381 0.00 0.00 0.00 4.34
2629 4476 2.159156 GGAACCTGGAAACCACAACAAC 60.159 50.000 0.00 0.00 0.00 3.32
2630 4477 2.104170 GGAACCTGGAAACCACAACAA 58.896 47.619 0.00 0.00 0.00 2.83
2631 4478 1.286553 AGGAACCTGGAAACCACAACA 59.713 47.619 0.00 0.00 0.00 3.33
2632 4479 1.681264 CAGGAACCTGGAAACCACAAC 59.319 52.381 12.54 0.00 40.17 3.32
2745 4592 2.503895 AGTCAGGATTTGGCTGGAAG 57.496 50.000 0.00 0.00 41.13 3.46
2775 4622 6.998802 AGAAGGTTATGTAGCATAGTGATCC 58.001 40.000 0.00 0.00 0.00 3.36
2781 4628 6.642950 GCACAGTAGAAGGTTATGTAGCATAG 59.357 42.308 0.00 0.00 0.00 2.23
2794 4641 2.489329 CCATTGGTTGCACAGTAGAAGG 59.511 50.000 0.00 0.00 0.00 3.46
2795 4642 2.095059 GCCATTGGTTGCACAGTAGAAG 60.095 50.000 4.26 0.00 0.00 2.85
2802 4649 2.230992 GTCATTAGCCATTGGTTGCACA 59.769 45.455 4.26 0.00 0.00 4.57
2803 4650 2.230992 TGTCATTAGCCATTGGTTGCAC 59.769 45.455 4.26 0.00 0.00 4.57
2809 4677 5.380043 AGTTCCTATGTCATTAGCCATTGG 58.620 41.667 0.00 0.00 35.93 3.16
3011 4879 4.142026 TGGTGATGTTAAGGTGTAGGATCG 60.142 45.833 0.00 0.00 0.00 3.69
3025 4896 2.884012 TCGATTTTGCTGTGGTGATGTT 59.116 40.909 0.00 0.00 0.00 2.71
3041 4912 2.093973 GTGGGTGATGAGACTGTCGATT 60.094 50.000 1.52 0.00 0.00 3.34
3058 4929 1.408822 GCAAGGATAAGGGTCAGTGGG 60.409 57.143 0.00 0.00 0.00 4.61
3505 5393 7.865385 CACTCTCTTCAGCCATCTTATAACTAC 59.135 40.741 0.00 0.00 0.00 2.73
3528 5416 2.057137 ATCACACAAAGCCACACACT 57.943 45.000 0.00 0.00 0.00 3.55
3570 5458 8.203485 TGCCTCTTGTTTCACTAATTCAATTTT 58.797 29.630 0.00 0.00 0.00 1.82
3579 5467 3.826157 CCCATTGCCTCTTGTTTCACTAA 59.174 43.478 0.00 0.00 0.00 2.24
3605 5493 5.755849 TCAGAAGAAACCAGGAAAGAGTTT 58.244 37.500 0.00 0.00 36.46 2.66
3632 5520 4.744631 GCCACCATTACAAGAAAACACAAG 59.255 41.667 0.00 0.00 0.00 3.16
3658 5547 7.611770 AGGTAAAATGTTCCCTATCTTTTTGC 58.388 34.615 0.00 0.00 0.00 3.68
3671 5561 5.003804 TCTGAGGCTGAAGGTAAAATGTTC 58.996 41.667 0.00 0.00 0.00 3.18
3700 5590 1.631405 TGTTTCCCATCCAAGGCAAG 58.369 50.000 0.00 0.00 0.00 4.01
3723 5613 2.952310 GGGTATTGTGGCTTTGATCCTC 59.048 50.000 0.00 0.00 0.00 3.71
3724 5614 2.311542 TGGGTATTGTGGCTTTGATCCT 59.688 45.455 0.00 0.00 0.00 3.24
3725 5615 2.733956 TGGGTATTGTGGCTTTGATCC 58.266 47.619 0.00 0.00 0.00 3.36
3726 5616 3.131046 CCTTGGGTATTGTGGCTTTGATC 59.869 47.826 0.00 0.00 0.00 2.92
3727 5617 3.099141 CCTTGGGTATTGTGGCTTTGAT 58.901 45.455 0.00 0.00 0.00 2.57
3728 5618 2.524306 CCTTGGGTATTGTGGCTTTGA 58.476 47.619 0.00 0.00 0.00 2.69
3729 5619 1.550072 CCCTTGGGTATTGTGGCTTTG 59.450 52.381 0.00 0.00 0.00 2.77
3751 5641 7.602644 TCCAGATATTATTCCAAATACTGCGAC 59.397 37.037 0.00 0.00 0.00 5.19
3834 5724 6.402766 CGAAATCTATTAGTTTGAACCGCCAA 60.403 38.462 0.00 0.00 0.00 4.52
3862 5752 1.142688 AAGGGTGAGGCCTGGAATGT 61.143 55.000 12.00 0.00 37.43 2.71
3881 5771 4.138290 CGGCCCCACATACATTACAAATA 58.862 43.478 0.00 0.00 0.00 1.40
4301 6191 0.325296 TGACCTTAGCCCATCCGAGT 60.325 55.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.