Multiple sequence alignment - TraesCS7B01G042300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G042300 chr7B 100.000 3621 0 0 1 3621 41543081 41539461 0.000000e+00 6687
1 TraesCS7B01G042300 chr7B 79.878 656 111 19 936 1580 41523398 41522753 9.160000e-126 460
2 TraesCS7B01G042300 chr7B 77.563 673 123 16 915 1577 41526194 41525540 7.340000e-102 381
3 TraesCS7B01G042300 chr7B 90.050 201 20 0 1575 1775 186334619 186334419 9.970000e-66 261
4 TraesCS7B01G042300 chr7A 94.188 1583 75 10 1 1577 92800838 92799267 0.000000e+00 2398
5 TraesCS7B01G042300 chr7A 89.432 1003 101 4 1858 2858 92799270 92798271 0.000000e+00 1260
6 TraesCS7B01G042300 chr7A 83.262 705 85 14 1 685 91924461 91925152 5.140000e-173 617
7 TraesCS7B01G042300 chr7A 83.692 558 65 11 2675 3231 91919988 91920520 1.500000e-138 503
8 TraesCS7B01G042300 chr7A 78.626 655 127 13 930 1577 91946457 91947105 4.320000e-114 422
9 TraesCS7B01G042300 chr7A 82.379 454 49 24 1872 2312 92393625 92393190 2.050000e-97 366
10 TraesCS7B01G042300 chr7A 85.220 318 44 3 1056 1370 92394096 92393779 1.250000e-84 324
11 TraesCS7B01G042300 chr7A 84.556 259 40 0 1943 2201 91947175 91947433 1.290000e-64 257
12 TraesCS7B01G042300 chr7A 85.714 168 16 4 3456 3621 91920859 91921020 1.730000e-38 171
13 TraesCS7B01G042300 chr7A 89.623 106 8 3 1 105 91919318 91919421 8.160000e-27 132
14 TraesCS7B01G042300 chr7A 87.778 90 9 2 1452 1540 92393750 92393662 1.780000e-18 104
15 TraesCS7B01G042300 chr7D 92.155 956 68 6 1858 2808 90625183 90624230 0.000000e+00 1343
16 TraesCS7B01G042300 chr7D 92.482 838 56 5 744 1577 90626014 90625180 0.000000e+00 1192
17 TraesCS7B01G042300 chr7D 92.623 732 38 8 2 727 90629153 90628432 0.000000e+00 1038
18 TraesCS7B01G042300 chr7D 79.787 658 115 16 930 1577 90600743 90601392 2.550000e-126 462
19 TraesCS7B01G042300 chr7D 77.879 660 121 15 923 1576 90597709 90598349 1.580000e-103 387
20 TraesCS7B01G042300 chr7D 83.108 444 42 14 1872 2312 90619465 90619052 1.230000e-99 374
21 TraesCS7B01G042300 chr7D 84.716 229 26 7 3247 3471 90623481 90623258 1.690000e-53 220
22 TraesCS7B01G042300 chr7D 83.616 177 22 3 2077 2253 90602767 90602936 3.740000e-35 159
23 TraesCS7B01G042300 chr7D 96.104 77 3 0 1786 1862 555969003 555969079 3.800000e-25 126
24 TraesCS7B01G042300 chr7D 85.039 127 14 5 1 125 90586151 90586274 1.370000e-24 124
25 TraesCS7B01G042300 chr7D 90.000 90 8 1 1 89 90596419 90596508 8.220000e-22 115
26 TraesCS7B01G042300 chr7D 87.356 87 10 1 1457 1543 90619587 90619502 8.270000e-17 99
27 TraesCS7B01G042300 chr3A 83.673 833 81 29 2816 3621 275850738 275849934 0.000000e+00 734
28 TraesCS7B01G042300 chr3A 90.547 201 19 0 1575 1775 525170071 525169871 2.140000e-67 267
29 TraesCS7B01G042300 chr3A 83.969 262 18 8 1601 1862 749431622 749431859 2.810000e-56 230
30 TraesCS7B01G042300 chr3D 84.196 734 68 23 2908 3621 170348471 170349176 0.000000e+00 669
31 TraesCS7B01G042300 chr3D 80.556 288 30 9 1575 1862 447584884 447585145 7.930000e-47 198
32 TraesCS7B01G042300 chr2A 93.069 202 13 1 1574 1775 762848372 762848572 9.830000e-76 294
33 TraesCS7B01G042300 chr1A 92.188 192 15 0 1584 1775 32555410 32555219 4.610000e-69 272
34 TraesCS7B01G042300 chr5A 90.863 197 17 1 1579 1775 196838951 196838756 2.770000e-66 263
35 TraesCS7B01G042300 chr5B 90.050 201 19 1 1575 1775 347589337 347589536 3.590000e-65 259
36 TraesCS7B01G042300 chr5B 89.604 202 20 1 1574 1775 124920805 124921005 4.640000e-64 255
37 TraesCS7B01G042300 chr5B 92.941 85 5 1 1787 1871 654505735 654505652 4.910000e-24 122
38 TraesCS7B01G042300 chr4B 89.604 202 21 0 1574 1775 270860558 270860357 1.290000e-64 257
39 TraesCS7B01G042300 chr4B 82.168 286 26 9 1575 1860 460330851 460331111 4.710000e-54 222
40 TraesCS7B01G042300 chr2B 89.655 203 18 3 1575 1775 15116602 15116803 4.640000e-64 255
41 TraesCS7B01G042300 chr6D 97.333 75 2 0 1787 1861 337585053 337585127 1.060000e-25 128
42 TraesCS7B01G042300 chr3B 96.104 77 3 0 1787 1863 813257041 813257117 3.800000e-25 126
43 TraesCS7B01G042300 chr1D 97.297 74 2 0 1787 1860 228188882 228188809 3.800000e-25 126
44 TraesCS7B01G042300 chr5D 93.827 81 5 0 1787 1867 536662629 536662549 4.910000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G042300 chr7B 41539461 41543081 3620 True 6687.000000 6687 100.000000 1 3621 1 chr7B.!!$R1 3620
1 TraesCS7B01G042300 chr7B 41522753 41526194 3441 True 420.500000 460 78.720500 915 1580 2 chr7B.!!$R3 665
2 TraesCS7B01G042300 chr7A 92798271 92800838 2567 True 1829.000000 2398 91.810000 1 2858 2 chr7A.!!$R2 2857
3 TraesCS7B01G042300 chr7A 91919318 91925152 5834 False 355.750000 617 85.572750 1 3621 4 chr7A.!!$F1 3620
4 TraesCS7B01G042300 chr7A 91946457 91947433 976 False 339.500000 422 81.591000 930 2201 2 chr7A.!!$F2 1271
5 TraesCS7B01G042300 chr7A 92393190 92394096 906 True 264.666667 366 85.125667 1056 2312 3 chr7A.!!$R1 1256
6 TraesCS7B01G042300 chr7D 90619052 90629153 10101 True 711.000000 1343 88.740000 2 3471 6 chr7D.!!$R1 3469
7 TraesCS7B01G042300 chr7D 90596419 90602936 6517 False 280.750000 462 82.820500 1 2253 4 chr7D.!!$F3 2252
8 TraesCS7B01G042300 chr3A 275849934 275850738 804 True 734.000000 734 83.673000 2816 3621 1 chr3A.!!$R1 805
9 TraesCS7B01G042300 chr3D 170348471 170349176 705 False 669.000000 669 84.196000 2908 3621 1 chr3D.!!$F1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
411 542 0.904649 TGACTCGTCAGCCATTGGAT 59.095 50.0 6.95 0.0 34.14 3.41 F
1259 4118 0.326264 CTGGTAAGCTTGTCCTGCCT 59.674 55.0 9.86 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 4184 0.179020 TTGGCTCTATTCCATGCCCG 60.179 55.0 0.00 0.0 44.32 6.13 R
3254 7127 0.032403 CACTGACACCGGGTTTACGA 59.968 55.0 6.32 0.0 35.47 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 2.679336 TGCGTTCATCACAGAATCCATG 59.321 45.455 0.00 0.00 0.00 3.66
127 141 3.052036 CTGTGAACCGAAAATGCAAAGG 58.948 45.455 0.00 0.00 0.00 3.11
170 252 5.296035 ACAGGAAACTCGAAAACGAAATCTT 59.704 36.000 0.00 0.00 40.21 2.40
398 529 1.395045 TAGGCAGCCTCCATGACTCG 61.395 60.000 20.38 0.00 37.23 4.18
411 542 0.904649 TGACTCGTCAGCCATTGGAT 59.095 50.000 6.95 0.00 34.14 3.41
595 758 7.931275 ACTAACACCAAAAAGATCAGAAAGAC 58.069 34.615 0.00 0.00 0.00 3.01
600 763 2.743636 AAAGATCAGAAAGACGGCGA 57.256 45.000 16.62 0.00 0.00 5.54
717 1153 3.940852 TGGCATGCACTACTCTGTATTTG 59.059 43.478 21.36 0.00 0.00 2.32
735 1171 2.863153 GCTACGCAGCCACACAAG 59.137 61.111 0.00 0.00 42.37 3.16
920 3772 7.555914 ACCCATTTGCTTTGAAACAAACTATTT 59.444 29.630 7.47 0.00 38.50 1.40
959 3812 2.166254 CCCATAAAACTGCCAAAGCGAT 59.834 45.455 0.00 0.00 44.31 4.58
1028 3884 6.500684 TTGTGAAGAACCATCAAAGATAGC 57.499 37.500 0.00 0.00 0.00 2.97
1119 3975 0.827507 AGCAAAACCGCCCAGACATT 60.828 50.000 0.00 0.00 0.00 2.71
1258 4117 0.678048 CCTGGTAAGCTTGTCCTGCC 60.678 60.000 9.86 0.00 0.00 4.85
1259 4118 0.326264 CTGGTAAGCTTGTCCTGCCT 59.674 55.000 9.86 0.00 0.00 4.75
1321 4184 4.277174 TGATCGATCTTTCTCTAGGCTGTC 59.723 45.833 25.02 0.00 0.00 3.51
1364 4227 5.656416 AGTTTTCTTGGTGAGGTGATGAAAA 59.344 36.000 0.00 0.00 32.06 2.29
1459 4322 3.955650 CGTATGGAAGGATACGGGAAT 57.044 47.619 0.00 0.00 44.86 3.01
1462 4325 4.081642 CGTATGGAAGGATACGGGAATGAT 60.082 45.833 0.00 0.00 44.86 2.45
1558 4422 1.672356 CTATAGCATGTGGCCCGCC 60.672 63.158 0.00 0.00 46.50 6.13
1577 4449 2.196595 CCCATCCTCCTTTCAGGTACA 58.803 52.381 0.00 0.00 36.53 2.90
1580 4452 1.652947 TCCTCCTTTCAGGTACACCC 58.347 55.000 0.00 0.00 36.53 4.61
1582 4454 1.555533 CCTCCTTTCAGGTACACCCTC 59.444 57.143 0.00 0.00 43.86 4.30
1588 4460 0.971386 TCAGGTACACCCTCCGTTTC 59.029 55.000 0.00 0.00 43.86 2.78
1589 4461 0.974383 CAGGTACACCCTCCGTTTCT 59.026 55.000 0.00 0.00 43.86 2.52
1590 4462 1.346722 CAGGTACACCCTCCGTTTCTT 59.653 52.381 0.00 0.00 43.86 2.52
1591 4463 2.052468 AGGTACACCCTCCGTTTCTTT 58.948 47.619 0.00 0.00 40.71 2.52
1592 4464 2.440627 AGGTACACCCTCCGTTTCTTTT 59.559 45.455 0.00 0.00 40.71 2.27
1593 4465 3.117776 AGGTACACCCTCCGTTTCTTTTT 60.118 43.478 0.00 0.00 40.71 1.94
1594 4466 4.102996 AGGTACACCCTCCGTTTCTTTTTA 59.897 41.667 0.00 0.00 40.71 1.52
1595 4467 4.453478 GGTACACCCTCCGTTTCTTTTTAG 59.547 45.833 0.00 0.00 0.00 1.85
1596 4468 4.160642 ACACCCTCCGTTTCTTTTTAGT 57.839 40.909 0.00 0.00 0.00 2.24
1597 4469 4.132336 ACACCCTCCGTTTCTTTTTAGTC 58.868 43.478 0.00 0.00 0.00 2.59
1598 4470 4.141551 ACACCCTCCGTTTCTTTTTAGTCT 60.142 41.667 0.00 0.00 0.00 3.24
1599 4471 4.213482 CACCCTCCGTTTCTTTTTAGTCTG 59.787 45.833 0.00 0.00 0.00 3.51
1600 4472 3.188667 CCCTCCGTTTCTTTTTAGTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
1601 4473 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
1602 4474 4.455877 CCTCCGTTTCTTTTTAGTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
1603 4475 5.048713 CCTCCGTTTCTTTTTAGTCTGCATT 60.049 40.000 0.00 0.00 0.00 3.56
1604 4476 6.385649 TCCGTTTCTTTTTAGTCTGCATTT 57.614 33.333 0.00 0.00 0.00 2.32
1605 4477 7.308348 CCTCCGTTTCTTTTTAGTCTGCATTTA 60.308 37.037 0.00 0.00 0.00 1.40
1606 4478 7.932335 TCCGTTTCTTTTTAGTCTGCATTTAA 58.068 30.769 0.00 0.00 0.00 1.52
1607 4479 8.073768 TCCGTTTCTTTTTAGTCTGCATTTAAG 58.926 33.333 0.00 0.00 0.00 1.85
1608 4480 8.073768 CCGTTTCTTTTTAGTCTGCATTTAAGA 58.926 33.333 0.00 0.00 0.00 2.10
1609 4481 9.612620 CGTTTCTTTTTAGTCTGCATTTAAGAT 57.387 29.630 0.00 0.00 0.00 2.40
1613 4485 9.912634 TCTTTTTAGTCTGCATTTAAGATTTGG 57.087 29.630 0.00 0.00 0.00 3.28
1614 4486 9.696917 CTTTTTAGTCTGCATTTAAGATTTGGT 57.303 29.630 0.00 0.00 0.00 3.67
1615 4487 9.691362 TTTTTAGTCTGCATTTAAGATTTGGTC 57.309 29.630 0.00 0.00 0.00 4.02
1616 4488 7.994425 TTAGTCTGCATTTAAGATTTGGTCA 57.006 32.000 0.00 0.00 0.00 4.02
1617 4489 6.899393 AGTCTGCATTTAAGATTTGGTCAA 57.101 33.333 0.00 0.00 0.00 3.18
1618 4490 7.288810 AGTCTGCATTTAAGATTTGGTCAAA 57.711 32.000 0.00 0.00 34.46 2.69
1619 4491 7.373493 AGTCTGCATTTAAGATTTGGTCAAAG 58.627 34.615 2.55 0.00 33.32 2.77
1620 4492 7.014615 AGTCTGCATTTAAGATTTGGTCAAAGT 59.985 33.333 2.55 0.00 33.32 2.66
1621 4493 7.327032 GTCTGCATTTAAGATTTGGTCAAAGTC 59.673 37.037 2.55 1.51 33.32 3.01
1622 4494 7.014134 TCTGCATTTAAGATTTGGTCAAAGTCA 59.986 33.333 2.55 0.00 33.32 3.41
1623 4495 7.495901 TGCATTTAAGATTTGGTCAAAGTCAA 58.504 30.769 2.55 0.00 33.32 3.18
1624 4496 7.984050 TGCATTTAAGATTTGGTCAAAGTCAAA 59.016 29.630 2.55 0.00 37.29 2.69
1625 4497 8.275632 GCATTTAAGATTTGGTCAAAGTCAAAC 58.724 33.333 2.55 0.00 35.97 2.93
1626 4498 9.533253 CATTTAAGATTTGGTCAAAGTCAAACT 57.467 29.630 2.55 0.00 35.97 2.66
1628 4500 9.581099 TTTAAGATTTGGTCAAAGTCAAACTTC 57.419 29.630 2.55 0.00 37.47 3.01
1629 4501 5.821204 AGATTTGGTCAAAGTCAAACTTCG 58.179 37.500 2.55 0.00 37.47 3.79
1630 4502 3.414549 TTGGTCAAAGTCAAACTTCGC 57.585 42.857 0.00 0.00 37.47 4.70
1631 4503 2.360844 TGGTCAAAGTCAAACTTCGCA 58.639 42.857 0.00 0.00 37.47 5.10
1632 4504 2.750166 TGGTCAAAGTCAAACTTCGCAA 59.250 40.909 0.00 0.00 37.47 4.85
1633 4505 3.191581 TGGTCAAAGTCAAACTTCGCAAA 59.808 39.130 0.00 0.00 37.47 3.68
1634 4506 3.791353 GGTCAAAGTCAAACTTCGCAAAG 59.209 43.478 0.00 0.00 37.47 2.77
1644 4516 3.145212 ACTTCGCAAAGTTTGACCAAC 57.855 42.857 19.82 0.07 43.28 3.77
1657 4529 7.793927 AGTTTGACCAACTTTGTTTGAAAAA 57.206 28.000 0.00 0.00 43.89 1.94
1740 4612 9.377312 TCTAACAACATTGATTTCATATCGTGA 57.623 29.630 0.00 0.00 34.25 4.35
1741 4613 9.986833 CTAACAACATTGATTTCATATCGTGAA 57.013 29.630 0.00 0.00 44.87 3.18
1743 4615 9.507280 AACAACATTGATTTCATATCGTGAATC 57.493 29.630 0.00 0.00 45.77 2.52
1744 4616 8.896744 ACAACATTGATTTCATATCGTGAATCT 58.103 29.630 0.00 0.00 45.77 2.40
1745 4617 9.726232 CAACATTGATTTCATATCGTGAATCTT 57.274 29.630 0.00 0.00 45.77 2.40
1746 4618 9.726232 AACATTGATTTCATATCGTGAATCTTG 57.274 29.630 0.00 0.00 45.77 3.02
1747 4619 9.112725 ACATTGATTTCATATCGTGAATCTTGA 57.887 29.630 0.00 0.00 45.77 3.02
1751 4623 9.987272 TGATTTCATATCGTGAATCTTGATACT 57.013 29.630 0.00 0.00 45.77 2.12
1834 4706 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
1835 4707 7.015226 TGACTTTGACCAAATCTTATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
1836 4708 5.821204 ACTTTGACCAAATCTTATATGCGC 58.179 37.500 0.00 0.00 0.00 6.09
1837 4709 5.356751 ACTTTGACCAAATCTTATATGCGCA 59.643 36.000 14.96 14.96 0.00 6.09
1838 4710 4.811555 TGACCAAATCTTATATGCGCAC 57.188 40.909 14.90 0.00 0.00 5.34
1839 4711 4.450976 TGACCAAATCTTATATGCGCACT 58.549 39.130 14.90 5.76 0.00 4.40
1840 4712 5.606505 TGACCAAATCTTATATGCGCACTA 58.393 37.500 14.90 4.52 0.00 2.74
1841 4713 6.052360 TGACCAAATCTTATATGCGCACTAA 58.948 36.000 14.90 13.15 0.00 2.24
1842 4714 6.540551 TGACCAAATCTTATATGCGCACTAAA 59.459 34.615 14.90 6.06 0.00 1.85
1843 4715 7.066404 TGACCAAATCTTATATGCGCACTAAAA 59.934 33.333 14.90 0.37 0.00 1.52
1844 4716 7.767261 ACCAAATCTTATATGCGCACTAAAAA 58.233 30.769 14.90 5.58 0.00 1.94
1845 4717 7.915397 ACCAAATCTTATATGCGCACTAAAAAG 59.085 33.333 14.90 12.57 0.00 2.27
1846 4718 8.128582 CCAAATCTTATATGCGCACTAAAAAGA 58.871 33.333 14.90 17.51 0.00 2.52
1847 4719 9.502145 CAAATCTTATATGCGCACTAAAAAGAA 57.498 29.630 14.90 3.76 0.00 2.52
1849 4721 9.503427 AATCTTATATGCGCACTAAAAAGAAAC 57.497 29.630 14.90 0.00 0.00 2.78
1850 4722 8.035165 TCTTATATGCGCACTAAAAAGAAACA 57.965 30.769 14.90 0.00 0.00 2.83
1851 4723 8.175069 TCTTATATGCGCACTAAAAAGAAACAG 58.825 33.333 14.90 0.00 0.00 3.16
1852 4724 4.829064 ATGCGCACTAAAAAGAAACAGA 57.171 36.364 14.90 0.00 0.00 3.41
1853 4725 4.209452 TGCGCACTAAAAAGAAACAGAG 57.791 40.909 5.66 0.00 0.00 3.35
1854 4726 3.003275 TGCGCACTAAAAAGAAACAGAGG 59.997 43.478 5.66 0.00 0.00 3.69
1855 4727 3.609409 GCGCACTAAAAAGAAACAGAGGG 60.609 47.826 0.30 0.00 0.00 4.30
1856 4728 3.813166 CGCACTAAAAAGAAACAGAGGGA 59.187 43.478 0.00 0.00 0.00 4.20
2096 4982 0.761187 AGGATGCCATCACATACGCT 59.239 50.000 7.06 0.00 35.90 5.07
2235 5129 1.340889 TGCAGAAAAATGGTGTCTGGC 59.659 47.619 2.39 0.00 39.36 4.85
2258 5152 2.109425 AGGTGCCAATAGTTCCGAAC 57.891 50.000 2.81 2.81 0.00 3.95
2325 5219 4.493547 CAGGAAGTTGCAAAAGTTGTTCA 58.506 39.130 0.00 0.00 0.00 3.18
2334 5228 5.718146 TGCAAAAGTTGTTCAATCTTGTCA 58.282 33.333 0.00 0.00 0.00 3.58
2458 5561 5.623956 AAGATCGGGTGTCATTGGTTATA 57.376 39.130 0.00 0.00 0.00 0.98
2467 5570 8.311836 CGGGTGTCATTGGTTATATTCTATACT 58.688 37.037 0.00 0.00 0.00 2.12
2529 5632 2.573009 TGGATGAGAAGAGACCAATGCA 59.427 45.455 0.00 0.00 0.00 3.96
2560 5663 7.625682 AGGAAGATAAAGACCAAGGACTATCTT 59.374 37.037 12.98 12.98 32.36 2.40
2562 5665 7.741554 AGATAAAGACCAAGGACTATCTTGT 57.258 36.000 0.00 0.00 41.72 3.16
2584 5687 8.594881 TTGTAAAACTCTTTGAAACTTTTGCA 57.405 26.923 0.00 0.00 0.00 4.08
2625 5728 6.630071 TCGACACAATGAAGATCTGAATGTA 58.370 36.000 0.00 0.00 0.00 2.29
2650 5754 6.882610 TTATGAAGTGCAAAAGACTGATGT 57.117 33.333 0.00 0.00 0.00 3.06
2663 5767 0.884259 CTGATGTGCGGTGTGGTGAA 60.884 55.000 0.00 0.00 0.00 3.18
2664 5768 0.884259 TGATGTGCGGTGTGGTGAAG 60.884 55.000 0.00 0.00 0.00 3.02
2668 5772 0.248458 GTGCGGTGTGGTGAAGTTTG 60.248 55.000 0.00 0.00 0.00 2.93
2766 5875 4.354071 TTTGTGTCATTGTATGCCATCG 57.646 40.909 0.00 0.00 0.00 3.84
2779 5888 1.450312 CCATCGGCAGGTCACTTCC 60.450 63.158 0.00 0.00 0.00 3.46
2862 6254 4.281657 TCTGCTTCAGATAGCTACTTCCA 58.718 43.478 0.00 0.00 41.76 3.53
2875 6267 3.196685 GCTACTTCCAATCCTGTCTGTCT 59.803 47.826 0.00 0.00 0.00 3.41
2904 6296 8.792830 TCCTTGTTTTTCTCCTATTATCACTG 57.207 34.615 0.00 0.00 0.00 3.66
2906 6298 7.391148 TTGTTTTTCTCCTATTATCACTGGC 57.609 36.000 0.00 0.00 0.00 4.85
2918 6310 2.052782 TCACTGGCGACTGATAGCTA 57.947 50.000 0.54 0.00 0.00 3.32
2927 6319 5.068591 TGGCGACTGATAGCTAGTTTATTCA 59.931 40.000 0.00 0.00 0.00 2.57
2948 6340 7.407393 TTCATTGATGACCATGCTGATTAAA 57.593 32.000 0.00 0.00 36.36 1.52
3057 6460 0.541863 AGAGTGCAATAACCGAGGGG 59.458 55.000 0.00 0.00 40.11 4.79
3060 6463 0.035820 GTGCAATAACCGAGGGGACA 60.036 55.000 0.00 0.00 36.97 4.02
3063 6466 1.471287 GCAATAACCGAGGGGACAAAC 59.529 52.381 0.00 0.00 36.97 2.93
3097 6500 3.501445 CAGGCTAATCATTTCCAGCTAGC 59.499 47.826 6.62 6.62 34.41 3.42
3098 6501 3.393941 AGGCTAATCATTTCCAGCTAGCT 59.606 43.478 12.68 12.68 33.78 3.32
3103 6506 6.811170 GCTAATCATTTCCAGCTAGCTAGTAG 59.189 42.308 18.86 13.49 31.23 2.57
3104 6507 6.739331 AATCATTTCCAGCTAGCTAGTAGT 57.261 37.500 18.86 0.00 0.00 2.73
3149 6552 5.104776 CCAAGAGTTGACCATAGGATGAGAA 60.105 44.000 0.00 0.00 0.00 2.87
3152 6555 6.648192 AGAGTTGACCATAGGATGAGAAAAG 58.352 40.000 0.00 0.00 0.00 2.27
3157 6560 5.196695 GACCATAGGATGAGAAAAGGCTTT 58.803 41.667 6.68 6.68 0.00 3.51
3167 6570 3.823304 GAGAAAAGGCTTTCACACTGGAT 59.177 43.478 13.76 0.00 42.99 3.41
3172 6575 4.148128 AGGCTTTCACACTGGATCATAG 57.852 45.455 0.00 0.00 0.00 2.23
3174 6577 3.873952 GGCTTTCACACTGGATCATAGAC 59.126 47.826 0.00 0.00 0.00 2.59
3202 7061 3.557595 CGGTTTCAGATAATCTGTCTGCC 59.442 47.826 3.42 0.00 44.58 4.85
3220 7093 1.280421 GCCAGAGGTCTTCCATTGTCT 59.720 52.381 0.00 0.00 35.89 3.41
3232 7105 8.406297 GGTCTTCCATTGTCTCCAATTTTATAC 58.594 37.037 0.00 0.00 39.28 1.47
3233 7106 9.178758 GTCTTCCATTGTCTCCAATTTTATACT 57.821 33.333 0.00 0.00 39.28 2.12
3309 7301 4.371786 TCATCTGAACTCACCGAATATGC 58.628 43.478 0.00 0.00 0.00 3.14
3345 7338 5.855925 TGCATAGTTGAATTTTGCAGTTACG 59.144 36.000 2.04 0.00 38.32 3.18
3346 7339 5.220024 GCATAGTTGAATTTTGCAGTTACGC 60.220 40.000 0.00 0.00 33.58 4.42
3424 7451 5.178438 GCTACGGTGTGGTACTATCTACTAC 59.822 48.000 0.00 0.00 0.00 2.73
3426 7453 5.121811 ACGGTGTGGTACTATCTACTACAG 58.878 45.833 0.00 0.00 39.10 2.74
3427 7454 5.121811 CGGTGTGGTACTATCTACTACAGT 58.878 45.833 0.00 0.00 39.10 3.55
3428 7455 6.127054 ACGGTGTGGTACTATCTACTACAGTA 60.127 42.308 0.00 0.00 39.10 2.74
3548 7605 2.606308 CCGGTAATACAATCGACCCGAG 60.606 54.545 0.00 0.00 39.91 4.63
3561 7618 0.608640 ACCCGAGCAAACCTCTGTAG 59.391 55.000 0.00 0.00 38.49 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 18 5.163332 CCTCTCTCATGGATTCTGTGATGAA 60.163 44.000 0.00 0.00 0.00 2.57
33 35 3.749665 CATGGAATGGAGACCTCTCTC 57.250 52.381 2.37 0.00 41.79 3.20
67 69 2.032528 ACGCATCACCCTGTGTGG 59.967 61.111 0.00 0.00 45.48 4.17
127 141 5.533528 TCCTGTTCCTAAGTTTTACTTTGGC 59.466 40.000 13.05 3.94 46.18 4.52
170 252 2.844348 GACCTGGGGATTCTTCAAGGTA 59.156 50.000 0.00 0.00 0.00 3.08
239 332 2.107953 GATCTCGGCCTGCTGTCC 59.892 66.667 0.00 0.00 0.00 4.02
398 529 3.091545 TCCAAGAAATCCAATGGCTGAC 58.908 45.455 0.00 0.00 32.87 3.51
411 542 5.850557 TCAGCAAAGAAACATCCAAGAAA 57.149 34.783 0.00 0.00 0.00 2.52
651 835 4.470602 TCTCTGTCCACTCACTTGTCTTA 58.529 43.478 0.00 0.00 0.00 2.10
727 1163 7.876068 ACCGGTGAAATATATATACTTGTGTGG 59.124 37.037 6.12 0.00 0.00 4.17
735 1171 8.319143 AGCACAAACCGGTGAAATATATATAC 57.681 34.615 8.52 0.00 41.32 1.47
971 3827 3.013219 TGCTACTGTTGTTTGTCTTGCA 58.987 40.909 0.00 0.00 0.00 4.08
972 3828 3.691049 TGCTACTGTTGTTTGTCTTGC 57.309 42.857 0.00 0.00 0.00 4.01
973 3829 4.037690 GCTTGCTACTGTTGTTTGTCTTG 58.962 43.478 0.00 0.00 0.00 3.02
976 3832 3.691049 TGCTTGCTACTGTTGTTTGTC 57.309 42.857 0.00 0.00 0.00 3.18
977 3833 3.428862 GGTTGCTTGCTACTGTTGTTTGT 60.429 43.478 7.08 0.00 0.00 2.83
978 3834 3.115554 GGTTGCTTGCTACTGTTGTTTG 58.884 45.455 7.08 0.00 0.00 2.93
1028 3884 2.682352 TGCACAATCGATGGTATGTTGG 59.318 45.455 4.78 0.00 0.00 3.77
1119 3975 2.268920 GGCATCTCGGAACAGGCA 59.731 61.111 0.00 0.00 0.00 4.75
1286 4146 4.790765 AGATCGATCACAACTCTGTTCA 57.209 40.909 26.47 0.00 31.64 3.18
1321 4184 0.179020 TTGGCTCTATTCCATGCCCG 60.179 55.000 0.00 0.00 44.32 6.13
1364 4227 5.582665 GGAGCTTGTAAAATTCTCTCGTCAT 59.417 40.000 0.00 0.00 0.00 3.06
1459 4322 7.118535 GTCTGCTTCTCTGATACGACTATATCA 59.881 40.741 0.00 0.00 38.88 2.15
1462 4325 5.701750 GGTCTGCTTCTCTGATACGACTATA 59.298 44.000 0.00 0.00 0.00 1.31
1577 4449 4.386711 CAGACTAAAAAGAAACGGAGGGT 58.613 43.478 0.00 0.00 0.00 4.34
1580 4452 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
1581 4453 6.385649 AAATGCAGACTAAAAAGAAACGGA 57.614 33.333 0.00 0.00 0.00 4.69
1582 4454 8.073768 TCTTAAATGCAGACTAAAAAGAAACGG 58.926 33.333 0.00 0.00 0.00 4.44
1588 4460 9.696917 ACCAAATCTTAAATGCAGACTAAAAAG 57.303 29.630 0.00 0.00 0.00 2.27
1589 4461 9.691362 GACCAAATCTTAAATGCAGACTAAAAA 57.309 29.630 0.00 0.00 0.00 1.94
1590 4462 8.855110 TGACCAAATCTTAAATGCAGACTAAAA 58.145 29.630 0.00 0.00 0.00 1.52
1591 4463 8.402798 TGACCAAATCTTAAATGCAGACTAAA 57.597 30.769 0.00 0.00 0.00 1.85
1592 4464 7.994425 TGACCAAATCTTAAATGCAGACTAA 57.006 32.000 0.00 0.00 0.00 2.24
1593 4465 7.994425 TTGACCAAATCTTAAATGCAGACTA 57.006 32.000 0.00 0.00 0.00 2.59
1594 4466 6.899393 TTGACCAAATCTTAAATGCAGACT 57.101 33.333 0.00 0.00 0.00 3.24
1595 4467 7.147976 ACTTTGACCAAATCTTAAATGCAGAC 58.852 34.615 0.00 0.00 0.00 3.51
1596 4468 7.014134 TGACTTTGACCAAATCTTAAATGCAGA 59.986 33.333 0.00 0.00 0.00 4.26
1597 4469 7.147312 TGACTTTGACCAAATCTTAAATGCAG 58.853 34.615 0.00 0.00 0.00 4.41
1598 4470 7.048629 TGACTTTGACCAAATCTTAAATGCA 57.951 32.000 0.00 0.00 0.00 3.96
1599 4471 7.945033 TTGACTTTGACCAAATCTTAAATGC 57.055 32.000 0.00 0.00 0.00 3.56
1600 4472 9.533253 AGTTTGACTTTGACCAAATCTTAAATG 57.467 29.630 0.00 0.00 35.14 2.32
1602 4474 9.581099 GAAGTTTGACTTTGACCAAATCTTAAA 57.419 29.630 0.00 0.00 38.80 1.52
1603 4475 7.913297 CGAAGTTTGACTTTGACCAAATCTTAA 59.087 33.333 2.54 0.00 41.15 1.85
1604 4476 7.414436 CGAAGTTTGACTTTGACCAAATCTTA 58.586 34.615 2.54 0.00 41.15 2.10
1605 4477 6.265577 CGAAGTTTGACTTTGACCAAATCTT 58.734 36.000 2.54 0.00 41.15 2.40
1606 4478 5.733373 GCGAAGTTTGACTTTGACCAAATCT 60.733 40.000 11.32 0.00 41.15 2.40
1607 4479 4.441087 GCGAAGTTTGACTTTGACCAAATC 59.559 41.667 11.32 0.00 41.15 2.17
1608 4480 4.142271 TGCGAAGTTTGACTTTGACCAAAT 60.142 37.500 11.32 0.00 41.15 2.32
1609 4481 3.191581 TGCGAAGTTTGACTTTGACCAAA 59.808 39.130 11.32 0.00 41.15 3.28
1610 4482 2.750166 TGCGAAGTTTGACTTTGACCAA 59.250 40.909 11.32 0.00 41.15 3.67
1611 4483 2.360844 TGCGAAGTTTGACTTTGACCA 58.639 42.857 11.32 0.00 41.15 4.02
1612 4484 3.414549 TTGCGAAGTTTGACTTTGACC 57.585 42.857 11.32 0.00 41.15 4.02
1613 4485 4.412207 ACTTTGCGAAGTTTGACTTTGAC 58.588 39.130 13.90 4.59 43.48 3.18
1614 4486 4.695217 ACTTTGCGAAGTTTGACTTTGA 57.305 36.364 13.90 0.00 43.48 2.69
1714 4586 9.377312 TCACGATATGAAATCAATGTTGTTAGA 57.623 29.630 0.00 0.00 33.02 2.10
1715 4587 9.986833 TTCACGATATGAAATCAATGTTGTTAG 57.013 29.630 0.00 0.00 44.59 2.34
1793 4665 7.637709 AAAGTCAAACTTTGTCAACTTTGAC 57.362 32.000 24.90 24.90 45.83 3.18
1808 4680 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
1809 4681 7.967854 CGCATATAAGATTTGGTCAAAGTCAAA 59.032 33.333 2.55 0.00 37.29 2.69
1810 4682 7.471721 CGCATATAAGATTTGGTCAAAGTCAA 58.528 34.615 2.55 0.00 33.32 3.18
1811 4683 6.458206 GCGCATATAAGATTTGGTCAAAGTCA 60.458 38.462 0.30 0.00 33.32 3.41
1812 4684 5.909610 GCGCATATAAGATTTGGTCAAAGTC 59.090 40.000 0.30 1.51 33.32 3.01
1813 4685 5.356751 TGCGCATATAAGATTTGGTCAAAGT 59.643 36.000 5.66 0.00 33.32 2.66
1814 4686 5.682862 GTGCGCATATAAGATTTGGTCAAAG 59.317 40.000 15.91 0.00 33.32 2.77
1815 4687 5.356751 AGTGCGCATATAAGATTTGGTCAAA 59.643 36.000 15.91 0.00 34.46 2.69
1816 4688 4.881273 AGTGCGCATATAAGATTTGGTCAA 59.119 37.500 15.91 0.00 0.00 3.18
1817 4689 4.450976 AGTGCGCATATAAGATTTGGTCA 58.549 39.130 15.91 0.00 0.00 4.02
1818 4690 6.539649 TTAGTGCGCATATAAGATTTGGTC 57.460 37.500 15.91 0.00 0.00 4.02
1819 4691 6.935741 TTTAGTGCGCATATAAGATTTGGT 57.064 33.333 15.91 0.00 0.00 3.67
1820 4692 8.128582 TCTTTTTAGTGCGCATATAAGATTTGG 58.871 33.333 15.91 5.28 0.00 3.28
1821 4693 9.502145 TTCTTTTTAGTGCGCATATAAGATTTG 57.498 29.630 15.91 5.75 0.00 2.32
1823 4695 9.503427 GTTTCTTTTTAGTGCGCATATAAGATT 57.497 29.630 15.91 0.00 0.00 2.40
1824 4696 8.673711 TGTTTCTTTTTAGTGCGCATATAAGAT 58.326 29.630 15.91 0.00 0.00 2.40
1825 4697 8.035165 TGTTTCTTTTTAGTGCGCATATAAGA 57.965 30.769 15.91 15.24 0.00 2.10
1826 4698 8.175069 TCTGTTTCTTTTTAGTGCGCATATAAG 58.825 33.333 15.91 13.18 0.00 1.73
1827 4699 8.035165 TCTGTTTCTTTTTAGTGCGCATATAA 57.965 30.769 15.91 13.71 0.00 0.98
1828 4700 7.201609 CCTCTGTTTCTTTTTAGTGCGCATATA 60.202 37.037 15.91 7.36 0.00 0.86
1829 4701 6.403636 CCTCTGTTTCTTTTTAGTGCGCATAT 60.404 38.462 15.91 8.56 0.00 1.78
1830 4702 5.106712 CCTCTGTTTCTTTTTAGTGCGCATA 60.107 40.000 15.91 4.23 0.00 3.14
1831 4703 4.320494 CCTCTGTTTCTTTTTAGTGCGCAT 60.320 41.667 15.91 5.37 0.00 4.73
1832 4704 3.003275 CCTCTGTTTCTTTTTAGTGCGCA 59.997 43.478 5.66 5.66 0.00 6.09
1833 4705 3.555518 CCTCTGTTTCTTTTTAGTGCGC 58.444 45.455 0.00 0.00 0.00 6.09
1834 4706 3.813166 TCCCTCTGTTTCTTTTTAGTGCG 59.187 43.478 0.00 0.00 0.00 5.34
1835 4707 4.822350 ACTCCCTCTGTTTCTTTTTAGTGC 59.178 41.667 0.00 0.00 0.00 4.40
1836 4708 6.427242 GGTACTCCCTCTGTTTCTTTTTAGTG 59.573 42.308 0.00 0.00 0.00 2.74
1837 4709 6.329460 AGGTACTCCCTCTGTTTCTTTTTAGT 59.671 38.462 0.00 0.00 40.71 2.24
1838 4710 6.770542 AGGTACTCCCTCTGTTTCTTTTTAG 58.229 40.000 0.00 0.00 40.71 1.85
1839 4711 6.758806 AGGTACTCCCTCTGTTTCTTTTTA 57.241 37.500 0.00 0.00 40.71 1.52
1840 4712 5.648330 AGGTACTCCCTCTGTTTCTTTTT 57.352 39.130 0.00 0.00 40.71 1.94
1841 4713 5.369993 AGAAGGTACTCCCTCTGTTTCTTTT 59.630 40.000 0.00 0.00 45.47 2.27
1842 4714 4.908481 AGAAGGTACTCCCTCTGTTTCTTT 59.092 41.667 0.00 0.00 45.47 2.52
1843 4715 4.494591 AGAAGGTACTCCCTCTGTTTCTT 58.505 43.478 0.00 0.00 45.47 2.52
1844 4716 4.134933 AGAAGGTACTCCCTCTGTTTCT 57.865 45.455 0.00 0.00 45.47 2.52
1845 4717 5.262804 TCTAGAAGGTACTCCCTCTGTTTC 58.737 45.833 0.00 0.00 45.47 2.78
1846 4718 5.272405 TCTAGAAGGTACTCCCTCTGTTT 57.728 43.478 0.00 0.00 45.47 2.83
1847 4719 4.949966 TCTAGAAGGTACTCCCTCTGTT 57.050 45.455 0.00 0.00 45.47 3.16
1848 4720 4.949966 TTCTAGAAGGTACTCCCTCTGT 57.050 45.455 0.00 0.00 45.47 3.41
1849 4721 6.800072 AAATTCTAGAAGGTACTCCCTCTG 57.200 41.667 11.53 0.00 45.47 3.35
1850 4722 9.150028 GATAAAATTCTAGAAGGTACTCCCTCT 57.850 37.037 11.53 0.00 45.47 3.69
1851 4723 8.925338 TGATAAAATTCTAGAAGGTACTCCCTC 58.075 37.037 11.53 0.48 45.47 4.30
1853 4725 8.151596 CCTGATAAAATTCTAGAAGGTACTCCC 58.848 40.741 11.53 0.00 38.49 4.30
1854 4726 8.925338 TCCTGATAAAATTCTAGAAGGTACTCC 58.075 37.037 11.53 0.00 38.49 3.85
1925 4797 7.741027 ATGATCAGAATCGTTCAATTGCTAT 57.259 32.000 0.09 0.00 34.39 2.97
2066 4952 2.827800 TGGCATCCTCTTCGATCATC 57.172 50.000 0.00 0.00 0.00 2.92
2096 4982 6.491383 ACAGTGAGGGTAGTAGTTGAATCTA 58.509 40.000 0.00 0.00 0.00 1.98
2235 5129 1.468520 CGGAACTATTGGCACCTTGTG 59.531 52.381 0.00 0.00 36.51 3.33
2240 5134 0.725117 CGTTCGGAACTATTGGCACC 59.275 55.000 17.94 0.00 0.00 5.01
2258 5152 2.805671 TCCTGTGTTCACAAGTAATGCG 59.194 45.455 7.07 0.00 0.00 4.73
2325 5219 6.488006 AGCTTAACTGTTCACATGACAAGATT 59.512 34.615 0.00 0.00 0.00 2.40
2529 5632 6.023603 TCCTTGGTCTTTATCTTCCTGTACT 58.976 40.000 0.00 0.00 0.00 2.73
2560 5663 8.085296 TCTGCAAAAGTTTCAAAGAGTTTTACA 58.915 29.630 0.00 0.00 30.64 2.41
2562 5665 9.139174 CTTCTGCAAAAGTTTCAAAGAGTTTTA 57.861 29.630 0.00 0.00 30.64 1.52
2584 5687 3.018149 GTCGATGACTAGTGTCCCTTCT 58.982 50.000 0.00 0.00 42.28 2.85
2625 5728 7.811236 CACATCAGTCTTTTGCACTTCATAATT 59.189 33.333 0.00 0.00 0.00 1.40
2650 5754 0.678366 ACAAACTTCACCACACCGCA 60.678 50.000 0.00 0.00 0.00 5.69
2663 5767 2.717639 ACAGACTGCTGGAACAAACT 57.282 45.000 1.25 0.00 46.60 2.66
2664 5768 2.945668 AGAACAGACTGCTGGAACAAAC 59.054 45.455 1.25 0.00 46.60 2.93
2668 5772 3.996480 AGTAAGAACAGACTGCTGGAAC 58.004 45.455 1.25 0.00 46.60 3.62
2738 5844 5.278463 GGCATACAATGACACAAAACTGTCT 60.278 40.000 1.33 0.00 41.15 3.41
2766 5875 2.393646 AGAGATAGGAAGTGACCTGCC 58.606 52.381 0.00 0.00 40.81 4.85
2779 5888 7.332182 GGGTAACACTTGAACTGAAAGAGATAG 59.668 40.741 0.00 0.00 36.09 2.08
2862 6254 4.349342 ACAAGGAAGAAGACAGACAGGATT 59.651 41.667 0.00 0.00 0.00 3.01
2901 6293 2.060050 ACTAGCTATCAGTCGCCAGT 57.940 50.000 0.00 0.00 0.00 4.00
2904 6296 5.529791 TGAATAAACTAGCTATCAGTCGCC 58.470 41.667 0.00 0.00 0.00 5.54
2906 6298 8.803201 TCAATGAATAAACTAGCTATCAGTCG 57.197 34.615 0.00 0.00 0.00 4.18
2918 6310 6.604396 TCAGCATGGTCATCAATGAATAAACT 59.396 34.615 0.00 0.00 34.48 2.66
2921 6313 7.591421 AATCAGCATGGTCATCAATGAATAA 57.409 32.000 0.00 0.00 34.48 1.40
2927 6319 7.172868 TGTTTTAATCAGCATGGTCATCAAT 57.827 32.000 0.00 0.00 36.16 2.57
2985 6380 8.604035 CACTGTAGTTTATACTATTGTTGCTGG 58.396 37.037 0.00 0.00 39.01 4.85
3032 6435 4.876107 CCTCGGTTATTGCACTCTGTTAAT 59.124 41.667 0.00 0.00 0.00 1.40
3057 6460 4.275936 AGCCTGATGTAGTTTGTGTTTGTC 59.724 41.667 0.00 0.00 0.00 3.18
3060 6463 6.714810 TGATTAGCCTGATGTAGTTTGTGTTT 59.285 34.615 0.00 0.00 0.00 2.83
3063 6466 6.932356 ATGATTAGCCTGATGTAGTTTGTG 57.068 37.500 0.00 0.00 0.00 3.33
3097 6500 3.620374 CACAGCCTCATTTGCACTACTAG 59.380 47.826 0.00 0.00 0.00 2.57
3098 6501 3.260632 TCACAGCCTCATTTGCACTACTA 59.739 43.478 0.00 0.00 0.00 1.82
3103 6506 1.527034 TCTCACAGCCTCATTTGCAC 58.473 50.000 0.00 0.00 0.00 4.57
3104 6507 1.881973 GTTCTCACAGCCTCATTTGCA 59.118 47.619 0.00 0.00 0.00 4.08
3149 6552 3.228188 TGATCCAGTGTGAAAGCCTTT 57.772 42.857 0.00 0.00 0.00 3.11
3152 6555 3.873952 GTCTATGATCCAGTGTGAAAGCC 59.126 47.826 0.00 0.00 0.00 4.35
3157 6560 5.622233 CGTTTCAGTCTATGATCCAGTGTGA 60.622 44.000 0.00 0.00 37.89 3.58
3202 7061 2.568956 TGGAGACAATGGAAGACCTCTG 59.431 50.000 0.00 0.00 37.44 3.35
3244 7117 4.058124 ACCGGGTTTACGAGTCTTTTTAC 58.942 43.478 6.32 0.00 35.47 2.01
3247 7120 2.158914 ACACCGGGTTTACGAGTCTTTT 60.159 45.455 6.32 0.00 35.47 2.27
3248 7121 1.413812 ACACCGGGTTTACGAGTCTTT 59.586 47.619 6.32 0.00 35.47 2.52
3249 7122 1.000171 GACACCGGGTTTACGAGTCTT 60.000 52.381 6.32 0.00 36.49 3.01
3251 7124 0.314935 TGACACCGGGTTTACGAGTC 59.685 55.000 6.32 1.15 38.37 3.36
3252 7125 0.316204 CTGACACCGGGTTTACGAGT 59.684 55.000 6.32 0.00 35.47 4.18
3253 7126 0.316204 ACTGACACCGGGTTTACGAG 59.684 55.000 6.32 0.00 35.47 4.18
3254 7127 0.032403 CACTGACACCGGGTTTACGA 59.968 55.000 6.32 0.00 35.47 3.43
3255 7128 0.032403 TCACTGACACCGGGTTTACG 59.968 55.000 6.32 0.00 0.00 3.18
3261 7251 2.695666 AGATTAGATCACTGACACCGGG 59.304 50.000 6.32 0.00 0.00 5.73
3298 7288 0.449786 TGGCAAACGCATATTCGGTG 59.550 50.000 0.00 0.00 0.00 4.94
3307 7297 4.842292 TGCATTTTGGCAAACGCA 57.158 44.444 24.63 24.63 41.65 5.24
3324 7316 6.007936 TGCGTAACTGCAAAATTCAACTAT 57.992 33.333 0.00 0.00 43.02 2.12
3345 7338 1.230324 GCCCGGAAGATAGAATGTGC 58.770 55.000 0.73 0.00 0.00 4.57
3346 7339 2.213499 GTGCCCGGAAGATAGAATGTG 58.787 52.381 0.73 0.00 0.00 3.21
3400 7423 4.133078 AGTAGATAGTACCACACCGTAGC 58.867 47.826 0.00 0.00 0.00 3.58
3424 7451 3.565482 CCGATTGTCCCCAAATCATACTG 59.435 47.826 0.00 0.00 33.44 2.74
3426 7453 2.293399 GCCGATTGTCCCCAAATCATAC 59.707 50.000 0.00 0.00 33.44 2.39
3427 7454 2.174639 AGCCGATTGTCCCCAAATCATA 59.825 45.455 0.00 0.00 33.44 2.15
3428 7455 1.063717 AGCCGATTGTCCCCAAATCAT 60.064 47.619 0.00 0.00 33.44 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.