Multiple sequence alignment - TraesCS7B01G042100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G042100 | chr7B | 100.000 | 3511 | 0 | 0 | 1 | 3511 | 41527106 | 41523596 | 0.000000e+00 | 6484 |
1 | TraesCS7B01G042100 | chr7B | 77.563 | 673 | 123 | 16 | 913 | 1567 | 41542167 | 41541505 | 7.110000e-102 | 381 |
2 | TraesCS7B01G042100 | chr7B | 100.000 | 112 | 0 | 0 | 1 | 112 | 41531501 | 41531390 | 1.280000e-49 | 207 |
3 | TraesCS7B01G042100 | chr7D | 93.500 | 1677 | 95 | 9 | 369 | 2043 | 90597158 | 90598822 | 0.000000e+00 | 2481 |
4 | TraesCS7B01G042100 | chr7D | 92.626 | 773 | 38 | 8 | 2225 | 2986 | 90598805 | 90599569 | 0.000000e+00 | 1094 |
5 | TraesCS7B01G042100 | chr7D | 88.113 | 530 | 48 | 7 | 2991 | 3511 | 90600030 | 90600553 | 1.790000e-172 | 616 |
6 | TraesCS7B01G042100 | chr7D | 76.732 | 1126 | 225 | 25 | 923 | 2020 | 90625834 | 90624718 | 8.390000e-166 | 593 |
7 | TraesCS7B01G042100 | chr7D | 75.029 | 857 | 172 | 31 | 929 | 1760 | 90600743 | 90601582 | 3.330000e-95 | 359 |
8 | TraesCS7B01G042100 | chr7D | 94.545 | 165 | 9 | 0 | 209 | 373 | 397555077 | 397554913 | 4.500000e-64 | 255 |
9 | TraesCS7B01G042100 | chr7D | 93.137 | 102 | 6 | 1 | 110 | 210 | 90597058 | 90597159 | 7.850000e-32 | 148 |
10 | TraesCS7B01G042100 | chr7A | 86.778 | 1142 | 110 | 26 | 2225 | 3346 | 91945023 | 91946143 | 0.000000e+00 | 1234 |
11 | TraesCS7B01G042100 | chr7A | 87.520 | 633 | 70 | 8 | 763 | 1393 | 91939649 | 91940274 | 0.000000e+00 | 723 |
12 | TraesCS7B01G042100 | chr7A | 92.523 | 428 | 14 | 6 | 1616 | 2043 | 91944631 | 91945040 | 6.490000e-167 | 597 |
13 | TraesCS7B01G042100 | chr7A | 86.275 | 408 | 32 | 9 | 369 | 771 | 91938148 | 91938536 | 4.190000e-114 | 422 |
14 | TraesCS7B01G042100 | chr7A | 100.000 | 184 | 0 | 0 | 2044 | 2227 | 539714941 | 539715124 | 1.210000e-89 | 340 |
15 | TraesCS7B01G042100 | chr7A | 96.203 | 158 | 5 | 1 | 1474 | 1630 | 91942647 | 91942804 | 1.250000e-64 | 257 |
16 | TraesCS7B01G042100 | chr7A | 93.976 | 166 | 10 | 0 | 207 | 372 | 494786827 | 494786992 | 5.820000e-63 | 252 |
17 | TraesCS7B01G042100 | chr7A | 99.138 | 116 | 1 | 0 | 1 | 116 | 88976761 | 88976646 | 3.550000e-50 | 209 |
18 | TraesCS7B01G042100 | chr7A | 100.000 | 112 | 0 | 0 | 1 | 112 | 88981822 | 88981711 | 1.280000e-49 | 207 |
19 | TraesCS7B01G042100 | chr7A | 83.571 | 140 | 12 | 9 | 3379 | 3511 | 91946132 | 91946267 | 1.710000e-23 | 121 |
20 | TraesCS7B01G042100 | chr7A | 92.647 | 68 | 5 | 0 | 1383 | 1450 | 91942579 | 91942646 | 8.020000e-17 | 99 |
21 | TraesCS7B01G042100 | chr2B | 99.471 | 189 | 1 | 0 | 2039 | 2227 | 654443307 | 654443119 | 9.330000e-91 | 344 |
22 | TraesCS7B01G042100 | chr2B | 98.947 | 190 | 1 | 1 | 2043 | 2232 | 402680828 | 402680640 | 4.340000e-89 | 339 |
23 | TraesCS7B01G042100 | chr2B | 98.438 | 192 | 2 | 1 | 2036 | 2226 | 409336370 | 409336561 | 1.560000e-88 | 337 |
24 | TraesCS7B01G042100 | chr3A | 95.714 | 210 | 6 | 3 | 2046 | 2254 | 646739066 | 646739273 | 5.620000e-88 | 335 |
25 | TraesCS7B01G042100 | chr3A | 95.092 | 163 | 8 | 0 | 208 | 370 | 600920854 | 600921016 | 1.250000e-64 | 257 |
26 | TraesCS7B01G042100 | chr3A | 95.062 | 162 | 8 | 0 | 209 | 370 | 238686210 | 238686371 | 4.500000e-64 | 255 |
27 | TraesCS7B01G042100 | chr1B | 99.459 | 185 | 0 | 1 | 2044 | 2228 | 604039853 | 604039670 | 5.620000e-88 | 335 |
28 | TraesCS7B01G042100 | chr1B | 97.423 | 194 | 3 | 2 | 2036 | 2228 | 397427274 | 397427466 | 2.610000e-86 | 329 |
29 | TraesCS7B01G042100 | chr1B | 99.107 | 112 | 1 | 0 | 1 | 112 | 102646181 | 102646292 | 5.940000e-48 | 202 |
30 | TraesCS7B01G042100 | chr1B | 99.107 | 112 | 1 | 0 | 1 | 112 | 102647132 | 102647243 | 5.940000e-48 | 202 |
31 | TraesCS7B01G042100 | chr6B | 98.413 | 189 | 3 | 0 | 2039 | 2227 | 147094915 | 147094727 | 2.020000e-87 | 333 |
32 | TraesCS7B01G042100 | chr6B | 99.115 | 113 | 1 | 0 | 1 | 113 | 267795742 | 267795854 | 1.650000e-48 | 204 |
33 | TraesCS7B01G042100 | chr6B | 99.107 | 112 | 1 | 0 | 1 | 112 | 267791003 | 267791114 | 5.940000e-48 | 202 |
34 | TraesCS7B01G042100 | chr6B | 99.107 | 112 | 1 | 0 | 1 | 112 | 716564012 | 716564123 | 5.940000e-48 | 202 |
35 | TraesCS7B01G042100 | chr2A | 97.872 | 188 | 3 | 1 | 2040 | 2227 | 60739054 | 60738868 | 1.220000e-84 | 324 |
36 | TraesCS7B01G042100 | chr2A | 99.115 | 113 | 1 | 0 | 1 | 113 | 159092277 | 159092389 | 1.650000e-48 | 204 |
37 | TraesCS7B01G042100 | chr6A | 94.578 | 166 | 8 | 1 | 209 | 373 | 201372729 | 201372894 | 4.500000e-64 | 255 |
38 | TraesCS7B01G042100 | chr4D | 94.048 | 168 | 10 | 0 | 207 | 374 | 64390469 | 64390636 | 4.500000e-64 | 255 |
39 | TraesCS7B01G042100 | chr3D | 95.062 | 162 | 8 | 0 | 209 | 370 | 187836469 | 187836308 | 4.500000e-64 | 255 |
40 | TraesCS7B01G042100 | chr5B | 94.512 | 164 | 9 | 0 | 207 | 370 | 354290142 | 354289979 | 1.620000e-63 | 254 |
41 | TraesCS7B01G042100 | chr1A | 91.573 | 178 | 14 | 1 | 206 | 383 | 441240750 | 441240926 | 9.740000e-61 | 244 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G042100 | chr7B | 41523596 | 41527106 | 3510 | True | 6484.000000 | 6484 | 100.000000 | 1 | 3511 | 1 | chr7B.!!$R1 | 3510 |
1 | TraesCS7B01G042100 | chr7B | 41541505 | 41542167 | 662 | True | 381.000000 | 381 | 77.563000 | 913 | 1567 | 1 | chr7B.!!$R3 | 654 |
2 | TraesCS7B01G042100 | chr7D | 90597058 | 90601582 | 4524 | False | 939.600000 | 2481 | 88.481000 | 110 | 3511 | 5 | chr7D.!!$F1 | 3401 |
3 | TraesCS7B01G042100 | chr7D | 90624718 | 90625834 | 1116 | True | 593.000000 | 593 | 76.732000 | 923 | 2020 | 1 | chr7D.!!$R1 | 1097 |
4 | TraesCS7B01G042100 | chr7A | 91938148 | 91946267 | 8119 | False | 493.285714 | 1234 | 89.359571 | 369 | 3511 | 7 | chr7A.!!$F3 | 3142 |
5 | TraesCS7B01G042100 | chr1B | 102646181 | 102647243 | 1062 | False | 202.000000 | 202 | 99.107000 | 1 | 112 | 2 | chr1B.!!$F2 | 111 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
712 | 719 | 0.035881 | TTGCTGCTGGAGTCTCTTGG | 59.964 | 55.0 | 0.00 | 0.00 | 0.0 | 3.61 | F |
1568 | 5029 | 0.102481 | CCTCCATCGTTCAGGTACCG | 59.898 | 60.0 | 6.18 | 1.56 | 0.0 | 4.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2074 | 7431 | 0.037303 | ACCTCATGGTCACAAGGCAG | 59.963 | 55.0 | 0.00 | 0.0 | 44.78 | 4.85 | R |
3085 | 8948 | 0.639943 | TCTACATAGGAGGGGCCACA | 59.360 | 55.0 | 8.31 | 0.0 | 40.02 | 4.17 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
40 | 41 | 1.526917 | CCTTGTCCCGATCATGCCC | 60.527 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
112 | 113 | 2.672651 | CAGCGCCCCACATGACAA | 60.673 | 61.111 | 2.29 | 0.00 | 0.00 | 3.18 |
113 | 114 | 2.360350 | AGCGCCCCACATGACAAG | 60.360 | 61.111 | 2.29 | 0.00 | 0.00 | 3.16 |
114 | 115 | 2.359850 | GCGCCCCACATGACAAGA | 60.360 | 61.111 | 0.00 | 0.00 | 0.00 | 3.02 |
115 | 116 | 1.971167 | GCGCCCCACATGACAAGAA | 60.971 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
116 | 117 | 1.875963 | CGCCCCACATGACAAGAAC | 59.124 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
118 | 119 | 0.539438 | GCCCCACATGACAAGAACCA | 60.539 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
119 | 120 | 1.993956 | CCCCACATGACAAGAACCAA | 58.006 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
120 | 121 | 2.528564 | CCCCACATGACAAGAACCAAT | 58.471 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
129 | 130 | 5.125100 | TGACAAGAACCAATGCTGAATTC | 57.875 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
150 | 151 | 3.840078 | TCTCAGAAAGATGACCCACATGA | 59.160 | 43.478 | 0.00 | 0.00 | 39.56 | 3.07 |
213 | 215 | 8.843885 | AATGAGGTAAAACAAACTACTACTCC | 57.156 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
214 | 216 | 6.762333 | TGAGGTAAAACAAACTACTACTCCC | 58.238 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
215 | 217 | 6.556116 | TGAGGTAAAACAAACTACTACTCCCT | 59.444 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
216 | 218 | 7.002250 | AGGTAAAACAAACTACTACTCCCTC | 57.998 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
217 | 219 | 6.013898 | AGGTAAAACAAACTACTACTCCCTCC | 60.014 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
218 | 220 | 4.532314 | AAACAAACTACTACTCCCTCCG | 57.468 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
219 | 221 | 3.166560 | ACAAACTACTACTCCCTCCGT | 57.833 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
220 | 222 | 3.504375 | ACAAACTACTACTCCCTCCGTT | 58.496 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
221 | 223 | 3.509184 | ACAAACTACTACTCCCTCCGTTC | 59.491 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
222 | 224 | 2.433662 | ACTACTACTCCCTCCGTTCC | 57.566 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
223 | 225 | 1.921748 | ACTACTACTCCCTCCGTTCCT | 59.078 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
224 | 226 | 3.118531 | ACTACTACTCCCTCCGTTCCTA | 58.881 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
225 | 227 | 3.525199 | ACTACTACTCCCTCCGTTCCTAA | 59.475 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
226 | 228 | 3.463048 | ACTACTCCCTCCGTTCCTAAA | 57.537 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
227 | 229 | 3.991683 | ACTACTCCCTCCGTTCCTAAAT | 58.008 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
228 | 230 | 5.134725 | ACTACTCCCTCCGTTCCTAAATA | 57.865 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
229 | 231 | 5.713807 | ACTACTCCCTCCGTTCCTAAATAT | 58.286 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
230 | 232 | 6.856757 | ACTACTCCCTCCGTTCCTAAATATA | 58.143 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
231 | 233 | 7.300658 | ACTACTCCCTCCGTTCCTAAATATAA | 58.699 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
232 | 234 | 6.667558 | ACTCCCTCCGTTCCTAAATATAAG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
233 | 235 | 6.141790 | ACTCCCTCCGTTCCTAAATATAAGT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
234 | 236 | 6.267242 | ACTCCCTCCGTTCCTAAATATAAGTC | 59.733 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
235 | 237 | 6.379579 | TCCCTCCGTTCCTAAATATAAGTCT | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
236 | 238 | 6.842807 | TCCCTCCGTTCCTAAATATAAGTCTT | 59.157 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
237 | 239 | 7.346436 | TCCCTCCGTTCCTAAATATAAGTCTTT | 59.654 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
238 | 240 | 7.656542 | CCCTCCGTTCCTAAATATAAGTCTTTC | 59.343 | 40.741 | 0.00 | 0.00 | 0.00 | 2.62 |
239 | 241 | 8.422566 | CCTCCGTTCCTAAATATAAGTCTTTCT | 58.577 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
255 | 257 | 8.558973 | AAGTCTTTCTAGAGATTTCAACATGG | 57.441 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
256 | 258 | 7.911651 | AGTCTTTCTAGAGATTTCAACATGGA | 58.088 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
257 | 259 | 7.821846 | AGTCTTTCTAGAGATTTCAACATGGAC | 59.178 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
258 | 260 | 7.065204 | GTCTTTCTAGAGATTTCAACATGGACC | 59.935 | 40.741 | 0.00 | 0.00 | 0.00 | 4.46 |
259 | 261 | 6.373005 | TTCTAGAGATTTCAACATGGACCA | 57.627 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
260 | 262 | 5.734720 | TCTAGAGATTTCAACATGGACCAC | 58.265 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
261 | 263 | 4.371624 | AGAGATTTCAACATGGACCACA | 57.628 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
262 | 264 | 4.927049 | AGAGATTTCAACATGGACCACAT | 58.073 | 39.130 | 0.00 | 0.00 | 41.57 | 3.21 |
263 | 265 | 6.065976 | AGAGATTTCAACATGGACCACATA | 57.934 | 37.500 | 0.00 | 0.00 | 37.84 | 2.29 |
264 | 266 | 5.882557 | AGAGATTTCAACATGGACCACATAC | 59.117 | 40.000 | 0.00 | 0.00 | 37.84 | 2.39 |
265 | 267 | 4.635765 | AGATTTCAACATGGACCACATACG | 59.364 | 41.667 | 0.00 | 0.00 | 37.84 | 3.06 |
266 | 268 | 2.394930 | TCAACATGGACCACATACGG | 57.605 | 50.000 | 0.00 | 0.00 | 37.84 | 4.02 |
267 | 269 | 1.903183 | TCAACATGGACCACATACGGA | 59.097 | 47.619 | 0.00 | 0.00 | 37.84 | 4.69 |
268 | 270 | 2.503765 | TCAACATGGACCACATACGGAT | 59.496 | 45.455 | 0.00 | 0.00 | 37.84 | 4.18 |
269 | 271 | 2.613595 | CAACATGGACCACATACGGATG | 59.386 | 50.000 | 5.94 | 5.94 | 37.84 | 3.51 |
282 | 284 | 6.477669 | ACATACGGATGTGTATAGACGTAG | 57.522 | 41.667 | 13.83 | 0.00 | 44.90 | 3.51 |
283 | 285 | 5.994054 | ACATACGGATGTGTATAGACGTAGT | 59.006 | 40.000 | 13.83 | 2.11 | 45.47 | 2.73 |
284 | 286 | 6.484643 | ACATACGGATGTGTATAGACGTAGTT | 59.515 | 38.462 | 13.83 | 0.00 | 43.54 | 2.24 |
285 | 287 | 7.012704 | ACATACGGATGTGTATAGACGTAGTTT | 59.987 | 37.037 | 13.83 | 0.24 | 43.54 | 2.66 |
286 | 288 | 8.498358 | CATACGGATGTGTATAGACGTAGTTTA | 58.502 | 37.037 | 0.00 | 0.00 | 39.67 | 2.01 |
287 | 289 | 8.715998 | ATACGGATGTGTATAGACGTAGTTTAG | 58.284 | 37.037 | 7.73 | 0.00 | 39.67 | 1.85 |
301 | 303 | 7.684937 | ACGTAGTTTAGAGTGTAGATTCACT | 57.315 | 36.000 | 0.00 | 0.00 | 45.46 | 3.41 |
311 | 313 | 6.734104 | AGTGTAGATTCACTCATTTTGCTC | 57.266 | 37.500 | 0.00 | 0.00 | 44.07 | 4.26 |
312 | 314 | 5.645497 | AGTGTAGATTCACTCATTTTGCTCC | 59.355 | 40.000 | 0.00 | 0.00 | 44.07 | 4.70 |
313 | 315 | 4.631377 | TGTAGATTCACTCATTTTGCTCCG | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
314 | 316 | 3.679389 | AGATTCACTCATTTTGCTCCGT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
315 | 317 | 4.832248 | AGATTCACTCATTTTGCTCCGTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
316 | 318 | 5.431765 | AGATTCACTCATTTTGCTCCGTAT | 58.568 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
317 | 319 | 6.582636 | AGATTCACTCATTTTGCTCCGTATA | 58.417 | 36.000 | 0.00 | 0.00 | 0.00 | 1.47 |
318 | 320 | 7.220030 | AGATTCACTCATTTTGCTCCGTATAT | 58.780 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
319 | 321 | 8.367911 | AGATTCACTCATTTTGCTCCGTATATA | 58.632 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
320 | 322 | 7.946655 | TTCACTCATTTTGCTCCGTATATAG | 57.053 | 36.000 | 0.00 | 0.00 | 0.00 | 1.31 |
321 | 323 | 7.050970 | TCACTCATTTTGCTCCGTATATAGT | 57.949 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
322 | 324 | 7.145985 | TCACTCATTTTGCTCCGTATATAGTC | 58.854 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
323 | 325 | 6.366332 | CACTCATTTTGCTCCGTATATAGTCC | 59.634 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
324 | 326 | 6.041637 | ACTCATTTTGCTCCGTATATAGTCCA | 59.958 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
325 | 327 | 7.004555 | TCATTTTGCTCCGTATATAGTCCAT | 57.995 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
326 | 328 | 8.129496 | TCATTTTGCTCCGTATATAGTCCATA | 57.871 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
327 | 329 | 8.758829 | TCATTTTGCTCCGTATATAGTCCATAT | 58.241 | 33.333 | 0.00 | 0.00 | 34.14 | 1.78 |
328 | 330 | 9.383519 | CATTTTGCTCCGTATATAGTCCATATT | 57.616 | 33.333 | 0.00 | 0.00 | 31.96 | 1.28 |
329 | 331 | 8.771920 | TTTTGCTCCGTATATAGTCCATATTG | 57.228 | 34.615 | 0.00 | 0.00 | 31.96 | 1.90 |
330 | 332 | 6.465439 | TGCTCCGTATATAGTCCATATTGG | 57.535 | 41.667 | 0.00 | 0.00 | 39.43 | 3.16 |
331 | 333 | 6.192044 | TGCTCCGTATATAGTCCATATTGGA | 58.808 | 40.000 | 0.00 | 0.00 | 45.98 | 3.53 |
365 | 367 | 9.813826 | AAAAGACATATATTTAGGAATGGAGGG | 57.186 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
366 | 368 | 8.757307 | AAGACATATATTTAGGAATGGAGGGA | 57.243 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
367 | 369 | 8.386012 | AGACATATATTTAGGAATGGAGGGAG | 57.614 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
500 | 502 | 2.844122 | AGACGCCTTTTTCACAACAC | 57.156 | 45.000 | 0.00 | 0.00 | 0.00 | 3.32 |
534 | 537 | 3.006430 | TCATCGAGTAGAACAGCCACAAA | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
541 | 544 | 3.996150 | AGAACAGCCACAAATTCACAG | 57.004 | 42.857 | 0.00 | 0.00 | 0.00 | 3.66 |
659 | 666 | 9.465985 | CTAATAAAGTTAAAAAGCCCGAACAAA | 57.534 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
711 | 718 | 1.888215 | TTTGCTGCTGGAGTCTCTTG | 58.112 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
712 | 719 | 0.035881 | TTGCTGCTGGAGTCTCTTGG | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
853 | 1981 | 5.144159 | AGTCACCATCTCCTATGGAAGTA | 57.856 | 43.478 | 10.90 | 0.00 | 41.64 | 2.24 |
871 | 1999 | 5.639931 | GGAAGTAGACAAAGGAGTGATCAAC | 59.360 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
877 | 2005 | 7.009179 | AGACAAAGGAGTGATCAACATTCTA | 57.991 | 36.000 | 0.00 | 0.00 | 35.88 | 2.10 |
878 | 2006 | 6.876257 | AGACAAAGGAGTGATCAACATTCTAC | 59.124 | 38.462 | 0.00 | 0.00 | 35.88 | 2.59 |
880 | 2008 | 4.392921 | AGGAGTGATCAACATTCTACGG | 57.607 | 45.455 | 0.00 | 0.00 | 35.88 | 4.02 |
885 | 2013 | 3.932710 | GTGATCAACATTCTACGGCTGAA | 59.067 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
900 | 2029 | 2.887152 | GGCTGAAAATCAACACACTCCT | 59.113 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
918 | 2048 | 1.887198 | CCTCTGTGTCGTCCACTACTT | 59.113 | 52.381 | 8.90 | 0.00 | 44.81 | 2.24 |
945 | 2075 | 3.968649 | TCTGCAAATCCATGCCCATAAAT | 59.031 | 39.130 | 0.00 | 0.00 | 45.83 | 1.40 |
956 | 2086 | 1.481772 | GCCCATAAATCAGCCAAAGCA | 59.518 | 47.619 | 0.00 | 0.00 | 43.56 | 3.91 |
964 | 2094 | 2.897271 | TCAGCCAAAGCAGGGATAAA | 57.103 | 45.000 | 0.00 | 0.00 | 43.56 | 1.40 |
966 | 2096 | 2.308570 | TCAGCCAAAGCAGGGATAAAGA | 59.691 | 45.455 | 0.00 | 0.00 | 43.56 | 2.52 |
969 | 2099 | 3.010584 | AGCCAAAGCAGGGATAAAGAAGA | 59.989 | 43.478 | 0.00 | 0.00 | 43.56 | 2.87 |
970 | 2100 | 3.379688 | GCCAAAGCAGGGATAAAGAAGAG | 59.620 | 47.826 | 0.00 | 0.00 | 39.53 | 2.85 |
978 | 2108 | 3.135530 | AGGGATAAAGAAGAGCGCAAGAT | 59.864 | 43.478 | 11.47 | 0.00 | 43.02 | 2.40 |
1044 | 2174 | 2.036089 | GACAGTCAAGATACCCCCGATC | 59.964 | 54.545 | 0.00 | 0.00 | 0.00 | 3.69 |
1104 | 2234 | 1.495878 | GGTATGTGATCGCTGAGCAG | 58.504 | 55.000 | 4.88 | 0.00 | 0.00 | 4.24 |
1110 | 2240 | 1.880340 | GATCGCTGAGCAGAACCGG | 60.880 | 63.158 | 4.88 | 0.00 | 0.00 | 5.28 |
1114 | 2244 | 4.020617 | CTGAGCAGAACCGGCCCA | 62.021 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
1167 | 2297 | 0.600057 | CCATCATCGATCTCAGCCGA | 59.400 | 55.000 | 0.00 | 0.00 | 39.25 | 5.54 |
1227 | 2363 | 2.895424 | CGCCTTGGAGAAGTGGGGT | 61.895 | 63.158 | 0.00 | 0.00 | 0.00 | 4.95 |
1245 | 2381 | 3.436035 | GGGGTCTGTTCCTGGTAAAGTTT | 60.436 | 47.826 | 0.00 | 0.00 | 0.00 | 2.66 |
1470 | 4931 | 0.750249 | TGGTCGTGTCAGAGAAGCAA | 59.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1568 | 5029 | 0.102481 | CCTCCATCGTTCAGGTACCG | 59.898 | 60.000 | 6.18 | 1.56 | 0.00 | 4.02 |
1593 | 5054 | 5.186198 | ACCATTCAGGCTTGTACTTCATAC | 58.814 | 41.667 | 0.00 | 0.00 | 43.14 | 2.39 |
1647 | 6962 | 1.195448 | CGTACGTAGTTGTCTGACCGT | 59.805 | 52.381 | 7.22 | 12.33 | 37.78 | 4.83 |
1707 | 7022 | 0.814010 | GGTGCCGTAAGATCGCCAAT | 60.814 | 55.000 | 0.00 | 0.00 | 39.17 | 3.16 |
1821 | 7136 | 6.325596 | GTTAAACTACTACCCTAACTGTCCG | 58.674 | 44.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2048 | 7405 | 8.166422 | AGTTAAACTGAGTTGTAAATGAAGGG | 57.834 | 34.615 | 0.00 | 0.00 | 0.00 | 3.95 |
2050 | 7407 | 4.993705 | ACTGAGTTGTAAATGAAGGGGA | 57.006 | 40.909 | 0.00 | 0.00 | 0.00 | 4.81 |
2051 | 7408 | 4.911390 | ACTGAGTTGTAAATGAAGGGGAG | 58.089 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2052 | 7409 | 3.686016 | TGAGTTGTAAATGAAGGGGAGC | 58.314 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
2054 | 7411 | 2.649816 | AGTTGTAAATGAAGGGGAGCCT | 59.350 | 45.455 | 0.00 | 0.00 | 0.00 | 4.58 |
2055 | 7412 | 3.076032 | AGTTGTAAATGAAGGGGAGCCTT | 59.924 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
2056 | 7413 | 4.291249 | AGTTGTAAATGAAGGGGAGCCTTA | 59.709 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
2057 | 7414 | 4.503714 | TGTAAATGAAGGGGAGCCTTAG | 57.496 | 45.455 | 0.00 | 0.00 | 0.00 | 2.18 |
2059 | 7416 | 0.181350 | AATGAAGGGGAGCCTTAGCG | 59.819 | 55.000 | 0.00 | 0.00 | 46.67 | 4.26 |
2060 | 7417 | 2.203084 | GAAGGGGAGCCTTAGCGC | 60.203 | 66.667 | 0.00 | 0.00 | 46.67 | 5.92 |
2063 | 7420 | 3.787001 | GGGGAGCCTTAGCGCAGT | 61.787 | 66.667 | 11.47 | 0.00 | 46.67 | 4.40 |
2064 | 7421 | 2.512515 | GGGAGCCTTAGCGCAGTG | 60.513 | 66.667 | 11.47 | 0.00 | 46.67 | 3.66 |
2066 | 7423 | 2.266055 | GAGCCTTAGCGCAGTGGT | 59.734 | 61.111 | 11.47 | 0.00 | 46.67 | 4.16 |
2067 | 7424 | 1.515954 | GAGCCTTAGCGCAGTGGTA | 59.484 | 57.895 | 11.47 | 0.00 | 46.67 | 3.25 |
2068 | 7425 | 0.108329 | GAGCCTTAGCGCAGTGGTAA | 60.108 | 55.000 | 11.47 | 5.53 | 46.67 | 2.85 |
2069 | 7426 | 0.323629 | AGCCTTAGCGCAGTGGTAAA | 59.676 | 50.000 | 11.47 | 0.00 | 46.67 | 2.01 |
2071 | 7428 | 0.727398 | CCTTAGCGCAGTGGTAAAGC | 59.273 | 55.000 | 11.47 | 0.00 | 39.86 | 3.51 |
2072 | 7429 | 1.676014 | CCTTAGCGCAGTGGTAAAGCT | 60.676 | 52.381 | 11.47 | 0.00 | 39.86 | 3.74 |
2073 | 7430 | 1.394917 | CTTAGCGCAGTGGTAAAGCTG | 59.605 | 52.381 | 11.47 | 0.00 | 39.86 | 4.24 |
2078 | 7435 | 1.878775 | CAGTGGTAAAGCTGCTGCC | 59.121 | 57.895 | 12.44 | 7.07 | 40.80 | 4.85 |
2079 | 7436 | 0.607489 | CAGTGGTAAAGCTGCTGCCT | 60.607 | 55.000 | 12.44 | 2.45 | 40.80 | 4.75 |
2080 | 7437 | 0.111253 | AGTGGTAAAGCTGCTGCCTT | 59.889 | 50.000 | 12.44 | 8.34 | 40.80 | 4.35 |
2081 | 7438 | 0.242017 | GTGGTAAAGCTGCTGCCTTG | 59.758 | 55.000 | 12.44 | 0.00 | 40.80 | 3.61 |
2082 | 7439 | 0.178992 | TGGTAAAGCTGCTGCCTTGT | 60.179 | 50.000 | 12.44 | 0.00 | 40.80 | 3.16 |
2083 | 7440 | 0.242017 | GGTAAAGCTGCTGCCTTGTG | 59.758 | 55.000 | 12.44 | 0.00 | 40.80 | 3.33 |
2084 | 7441 | 1.238439 | GTAAAGCTGCTGCCTTGTGA | 58.762 | 50.000 | 12.44 | 0.00 | 40.80 | 3.58 |
2085 | 7442 | 1.068954 | GTAAAGCTGCTGCCTTGTGAC | 60.069 | 52.381 | 12.44 | 0.00 | 40.80 | 3.67 |
2086 | 7443 | 1.458639 | AAAGCTGCTGCCTTGTGACC | 61.459 | 55.000 | 12.44 | 0.00 | 40.80 | 4.02 |
2087 | 7444 | 2.595463 | GCTGCTGCCTTGTGACCA | 60.595 | 61.111 | 3.85 | 0.00 | 0.00 | 4.02 |
2088 | 7445 | 1.975407 | GCTGCTGCCTTGTGACCAT | 60.975 | 57.895 | 3.85 | 0.00 | 0.00 | 3.55 |
2089 | 7446 | 1.880894 | CTGCTGCCTTGTGACCATG | 59.119 | 57.895 | 0.00 | 0.00 | 0.00 | 3.66 |
2090 | 7447 | 0.607217 | CTGCTGCCTTGTGACCATGA | 60.607 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2091 | 7448 | 0.607217 | TGCTGCCTTGTGACCATGAG | 60.607 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2092 | 7449 | 1.310933 | GCTGCCTTGTGACCATGAGG | 61.311 | 60.000 | 0.00 | 0.00 | 42.21 | 3.86 |
2102 | 7459 | 4.617875 | CCATGAGGTCACGGGTTC | 57.382 | 61.111 | 0.00 | 0.00 | 0.00 | 3.62 |
2103 | 7460 | 1.676968 | CCATGAGGTCACGGGTTCA | 59.323 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
2104 | 7461 | 0.036164 | CCATGAGGTCACGGGTTCAA | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2105 | 7462 | 1.442769 | CATGAGGTCACGGGTTCAAG | 58.557 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2106 | 7463 | 1.056660 | ATGAGGTCACGGGTTCAAGT | 58.943 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2107 | 7464 | 0.391597 | TGAGGTCACGGGTTCAAGTC | 59.608 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2110 | 7467 | 0.602905 | GGTCACGGGTTCAAGTCCTG | 60.603 | 60.000 | 0.00 | 0.00 | 37.36 | 3.86 |
2113 | 7470 | 0.107831 | CACGGGTTCAAGTCCTGGAA | 59.892 | 55.000 | 0.00 | 0.00 | 35.79 | 3.53 |
2114 | 7471 | 0.841289 | ACGGGTTCAAGTCCTGGAAA | 59.159 | 50.000 | 0.00 | 0.00 | 35.79 | 3.13 |
2115 | 7472 | 1.235724 | CGGGTTCAAGTCCTGGAAAC | 58.764 | 55.000 | 0.00 | 0.00 | 0.00 | 2.78 |
2116 | 7473 | 1.476110 | CGGGTTCAAGTCCTGGAAACA | 60.476 | 52.381 | 0.00 | 0.00 | 32.36 | 2.83 |
2131 | 7488 | 4.985538 | TGGAAACAGCCTCTTACAGAAAT | 58.014 | 39.130 | 0.00 | 0.00 | 35.01 | 2.17 |
2134 | 7491 | 5.938125 | GGAAACAGCCTCTTACAGAAATGTA | 59.062 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2139 | 7496 | 4.783227 | AGCCTCTTACAGAAATGTAGGGAA | 59.217 | 41.667 | 0.00 | 0.00 | 0.00 | 3.97 |
2143 | 7500 | 5.497474 | TCTTACAGAAATGTAGGGAAAGGC | 58.503 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
2144 | 7501 | 5.250774 | TCTTACAGAAATGTAGGGAAAGGCT | 59.749 | 40.000 | 0.00 | 0.00 | 0.00 | 4.58 |
2148 | 7505 | 0.328258 | AATGTAGGGAAAGGCTGCGT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
2149 | 7506 | 1.200519 | ATGTAGGGAAAGGCTGCGTA | 58.799 | 50.000 | 0.00 | 0.00 | 0.00 | 4.42 |
2150 | 7507 | 0.248289 | TGTAGGGAAAGGCTGCGTAC | 59.752 | 55.000 | 0.00 | 0.00 | 37.28 | 3.67 |
2151 | 7508 | 0.248289 | GTAGGGAAAGGCTGCGTACA | 59.752 | 55.000 | 0.00 | 0.00 | 36.89 | 2.90 |
2152 | 7509 | 0.978151 | TAGGGAAAGGCTGCGTACAA | 59.022 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2153 | 7510 | 0.328258 | AGGGAAAGGCTGCGTACAAT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2162 | 7535 | 2.352388 | GCTGCGTACAATAGACCCAAA | 58.648 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
2163 | 7536 | 2.351726 | GCTGCGTACAATAGACCCAAAG | 59.648 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2164 | 7537 | 3.596214 | CTGCGTACAATAGACCCAAAGT | 58.404 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
2165 | 7538 | 3.331150 | TGCGTACAATAGACCCAAAGTG | 58.669 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
2166 | 7539 | 2.676342 | GCGTACAATAGACCCAAAGTGG | 59.324 | 50.000 | 0.00 | 0.00 | 37.25 | 4.00 |
2167 | 7540 | 3.867216 | GCGTACAATAGACCCAAAGTGGT | 60.867 | 47.826 | 0.00 | 0.00 | 42.79 | 4.16 |
2173 | 7546 | 1.302271 | GACCCAAAGTGGTCGGACC | 60.302 | 63.158 | 20.36 | 20.36 | 44.98 | 4.46 |
2174 | 7547 | 2.033602 | CCCAAAGTGGTCGGACCC | 59.966 | 66.667 | 23.81 | 14.91 | 37.50 | 4.46 |
2175 | 7548 | 2.526046 | CCCAAAGTGGTCGGACCCT | 61.526 | 63.158 | 23.81 | 16.82 | 37.50 | 4.34 |
2176 | 7549 | 1.454539 | CCAAAGTGGTCGGACCCTT | 59.545 | 57.895 | 23.81 | 21.08 | 37.50 | 3.95 |
2178 | 7551 | 0.605589 | CAAAGTGGTCGGACCCTTCC | 60.606 | 60.000 | 23.81 | 9.51 | 37.50 | 3.46 |
2179 | 7552 | 1.775934 | AAAGTGGTCGGACCCTTCCC | 61.776 | 60.000 | 23.81 | 7.17 | 38.99 | 3.97 |
2180 | 7553 | 3.714001 | GTGGTCGGACCCTTCCCC | 61.714 | 72.222 | 23.81 | 0.00 | 38.99 | 4.81 |
2181 | 7554 | 4.257810 | TGGTCGGACCCTTCCCCA | 62.258 | 66.667 | 23.81 | 0.69 | 38.99 | 4.96 |
2183 | 7556 | 2.284405 | GTCGGACCCTTCCCCAGA | 60.284 | 66.667 | 0.00 | 0.00 | 38.99 | 3.86 |
2187 | 7560 | 2.125225 | GACCCTTCCCCAGACCCT | 59.875 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
2188 | 7561 | 2.204151 | ACCCTTCCCCAGACCCTG | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
2189 | 7562 | 3.732849 | CCCTTCCCCAGACCCTGC | 61.733 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
2191 | 7564 | 4.785453 | CTTCCCCAGACCCTGCGC | 62.785 | 72.222 | 0.00 | 0.00 | 0.00 | 6.09 |
2213 | 7586 | 1.522355 | CGGGAGCTACATGCACTGG | 60.522 | 63.158 | 0.00 | 0.00 | 45.94 | 4.00 |
2214 | 7587 | 1.153086 | GGGAGCTACATGCACTGGG | 60.153 | 63.158 | 0.00 | 0.00 | 45.94 | 4.45 |
2216 | 7589 | 1.821332 | GAGCTACATGCACTGGGGC | 60.821 | 63.158 | 0.00 | 0.00 | 45.94 | 5.80 |
2217 | 7590 | 2.262774 | GAGCTACATGCACTGGGGCT | 62.263 | 60.000 | 13.29 | 13.29 | 45.94 | 5.19 |
2218 | 7591 | 2.117156 | GCTACATGCACTGGGGCTG | 61.117 | 63.158 | 0.00 | 0.00 | 42.31 | 4.85 |
2219 | 7592 | 2.045045 | TACATGCACTGGGGCTGC | 60.045 | 61.111 | 0.00 | 0.00 | 35.03 | 5.25 |
2232 | 7605 | 3.356814 | GGCTGCCCCTTTAAACTGA | 57.643 | 52.632 | 7.66 | 0.00 | 0.00 | 3.41 |
2233 | 7606 | 1.177401 | GGCTGCCCCTTTAAACTGAG | 58.823 | 55.000 | 7.66 | 0.00 | 0.00 | 3.35 |
2234 | 7607 | 1.547901 | GGCTGCCCCTTTAAACTGAGT | 60.548 | 52.381 | 7.66 | 0.00 | 0.00 | 3.41 |
2235 | 7608 | 2.239400 | GCTGCCCCTTTAAACTGAGTT | 58.761 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
2236 | 7609 | 2.029918 | GCTGCCCCTTTAAACTGAGTTG | 60.030 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2237 | 7610 | 3.222603 | CTGCCCCTTTAAACTGAGTTGT | 58.777 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
2238 | 7611 | 4.394729 | CTGCCCCTTTAAACTGAGTTGTA | 58.605 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
2240 | 7613 | 5.202004 | TGCCCCTTTAAACTGAGTTGTAAA | 58.798 | 37.500 | 0.00 | 5.73 | 0.00 | 2.01 |
2241 | 7614 | 5.836358 | TGCCCCTTTAAACTGAGTTGTAAAT | 59.164 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2244 | 7617 | 7.255836 | GCCCCTTTAAACTGAGTTGTAAATCTT | 60.256 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
2520 | 7899 | 3.322254 | AGTGAAGATCTGAACGTGGTTCT | 59.678 | 43.478 | 9.61 | 0.00 | 42.39 | 3.01 |
2539 | 7918 | 9.220767 | GTGGTTCTGAAGTGTAGAAGATTAATT | 57.779 | 33.333 | 0.00 | 0.00 | 35.03 | 1.40 |
2542 | 7921 | 7.525688 | TCTGAAGTGTAGAAGATTAATTGCG | 57.474 | 36.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2543 | 7922 | 6.535150 | TCTGAAGTGTAGAAGATTAATTGCGG | 59.465 | 38.462 | 0.00 | 0.00 | 0.00 | 5.69 |
2600 | 7979 | 3.071479 | TCGTGGAGTTGGTTTATGCTTC | 58.929 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
2609 | 7988 | 4.811969 | TGGTTTATGCTTCGACCTTCTA | 57.188 | 40.909 | 0.00 | 0.00 | 33.33 | 2.10 |
2711 | 8090 | 3.435671 | CCCGTTGTTCTACATCACTTTCC | 59.564 | 47.826 | 0.00 | 0.00 | 0.00 | 3.13 |
2754 | 8141 | 5.716228 | TCCTTGTTTTCACCATGCTGATTAT | 59.284 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2841 | 8241 | 3.733443 | ACCTAAGCAAAGCACCTTTTG | 57.267 | 42.857 | 0.00 | 0.00 | 40.25 | 2.44 |
2891 | 8294 | 5.068636 | CAGACCAGGATAATCATTTCCAGG | 58.931 | 45.833 | 0.00 | 7.88 | 42.72 | 4.45 |
2911 | 8314 | 6.386927 | TCCAGGTAGAAGGTATGAACATGATT | 59.613 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
2913 | 8316 | 7.275183 | CAGGTAGAAGGTATGAACATGATTCA | 58.725 | 38.462 | 0.00 | 6.45 | 0.00 | 2.57 |
2951 | 8354 | 1.222936 | CCAGAGGCTGAGCGGAATT | 59.777 | 57.895 | 0.00 | 0.00 | 32.44 | 2.17 |
2960 | 8363 | 1.154035 | GAGCGGAATTTTGCCCACG | 60.154 | 57.895 | 0.00 | 0.00 | 0.00 | 4.94 |
3002 | 8862 | 7.665559 | AGCTTTCAGGTTATTTGTCACTGATAA | 59.334 | 33.333 | 0.00 | 0.00 | 37.93 | 1.75 |
3042 | 8902 | 8.868522 | ATCTTTCATCCTTGTCAAGTTCATAA | 57.131 | 30.769 | 11.61 | 0.40 | 0.00 | 1.90 |
3106 | 8969 | 1.694696 | GTGGCCCCTCCTATGTAGAAG | 59.305 | 57.143 | 0.00 | 0.00 | 35.26 | 2.85 |
3113 | 8976 | 6.410540 | GCCCCTCCTATGTAGAAGAAATATG | 58.589 | 44.000 | 0.00 | 0.00 | 0.00 | 1.78 |
3212 | 9075 | 5.594777 | TGAAGGGGGAAAATTGGCTAATAA | 58.405 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
3302 | 9165 | 2.812011 | ACAGCCCATACAAGAAAACGTC | 59.188 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
3348 | 9211 | 8.768397 | TGGTTCTCTCAACCATGTATACTTATT | 58.232 | 33.333 | 4.17 | 0.00 | 44.74 | 1.40 |
3376 | 9239 | 3.832490 | ACCTAGTGTCATGTGCTCAACTA | 59.168 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
3378 | 9241 | 3.045601 | AGTGTCATGTGCTCAACTACC | 57.954 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
3407 | 9270 | 3.871594 | GACACTTAATCTCACCGGGAATG | 59.128 | 47.826 | 6.32 | 0.00 | 0.00 | 2.67 |
3412 | 9275 | 5.414765 | ACTTAATCTCACCGGGAATGTTTTC | 59.585 | 40.000 | 6.32 | 0.00 | 0.00 | 2.29 |
3417 | 9280 | 5.378332 | TCTCACCGGGAATGTTTTCTTAAA | 58.622 | 37.500 | 6.32 | 0.00 | 32.16 | 1.52 |
3421 | 9284 | 4.234574 | CCGGGAATGTTTTCTTAAAGTGC | 58.765 | 43.478 | 0.00 | 0.00 | 32.16 | 4.40 |
3422 | 9285 | 4.234574 | CGGGAATGTTTTCTTAAAGTGCC | 58.765 | 43.478 | 0.00 | 0.00 | 32.16 | 5.01 |
3424 | 9287 | 5.606505 | GGGAATGTTTTCTTAAAGTGCCAA | 58.393 | 37.500 | 0.00 | 0.00 | 32.16 | 4.52 |
3454 | 9317 | 7.803279 | AATTCTATTTTAACGAGGGTGATCC | 57.197 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
129 | 130 | 4.212143 | TCATGTGGGTCATCTTTCTGAG | 57.788 | 45.455 | 0.00 | 0.00 | 34.09 | 3.35 |
203 | 205 | 1.921748 | AGGAACGGAGGGAGTAGTAGT | 59.078 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
208 | 210 | 7.300658 | ACTTATATTTAGGAACGGAGGGAGTA | 58.699 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
209 | 211 | 6.141790 | ACTTATATTTAGGAACGGAGGGAGT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
210 | 212 | 6.494146 | AGACTTATATTTAGGAACGGAGGGAG | 59.506 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
211 | 213 | 6.379579 | AGACTTATATTTAGGAACGGAGGGA | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
212 | 214 | 6.667558 | AGACTTATATTTAGGAACGGAGGG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
213 | 215 | 8.422566 | AGAAAGACTTATATTTAGGAACGGAGG | 58.577 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
229 | 231 | 9.658799 | CCATGTTGAAATCTCTAGAAAGACTTA | 57.341 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
230 | 232 | 8.378565 | TCCATGTTGAAATCTCTAGAAAGACTT | 58.621 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
231 | 233 | 7.821846 | GTCCATGTTGAAATCTCTAGAAAGACT | 59.178 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
232 | 234 | 7.065204 | GGTCCATGTTGAAATCTCTAGAAAGAC | 59.935 | 40.741 | 0.00 | 0.00 | 0.00 | 3.01 |
233 | 235 | 7.106239 | GGTCCATGTTGAAATCTCTAGAAAGA | 58.894 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
234 | 236 | 6.881065 | TGGTCCATGTTGAAATCTCTAGAAAG | 59.119 | 38.462 | 0.00 | 0.00 | 0.00 | 2.62 |
235 | 237 | 6.655003 | GTGGTCCATGTTGAAATCTCTAGAAA | 59.345 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
236 | 238 | 6.173339 | GTGGTCCATGTTGAAATCTCTAGAA | 58.827 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
237 | 239 | 5.248248 | TGTGGTCCATGTTGAAATCTCTAGA | 59.752 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
238 | 240 | 5.491070 | TGTGGTCCATGTTGAAATCTCTAG | 58.509 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
239 | 241 | 5.497464 | TGTGGTCCATGTTGAAATCTCTA | 57.503 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
240 | 242 | 4.371624 | TGTGGTCCATGTTGAAATCTCT | 57.628 | 40.909 | 0.00 | 0.00 | 0.00 | 3.10 |
241 | 243 | 5.220662 | CGTATGTGGTCCATGTTGAAATCTC | 60.221 | 44.000 | 0.00 | 0.00 | 34.86 | 2.75 |
242 | 244 | 4.635765 | CGTATGTGGTCCATGTTGAAATCT | 59.364 | 41.667 | 0.00 | 0.00 | 34.86 | 2.40 |
243 | 245 | 4.201910 | CCGTATGTGGTCCATGTTGAAATC | 60.202 | 45.833 | 0.00 | 0.00 | 34.86 | 2.17 |
244 | 246 | 3.694072 | CCGTATGTGGTCCATGTTGAAAT | 59.306 | 43.478 | 0.00 | 0.00 | 34.86 | 2.17 |
245 | 247 | 3.078097 | CCGTATGTGGTCCATGTTGAAA | 58.922 | 45.455 | 0.00 | 0.00 | 34.86 | 2.69 |
246 | 248 | 2.303311 | TCCGTATGTGGTCCATGTTGAA | 59.697 | 45.455 | 0.00 | 0.00 | 34.86 | 2.69 |
247 | 249 | 1.903183 | TCCGTATGTGGTCCATGTTGA | 59.097 | 47.619 | 0.00 | 0.00 | 34.86 | 3.18 |
248 | 250 | 2.394930 | TCCGTATGTGGTCCATGTTG | 57.605 | 50.000 | 0.00 | 0.00 | 34.86 | 3.33 |
249 | 251 | 2.238646 | ACATCCGTATGTGGTCCATGTT | 59.761 | 45.455 | 0.00 | 0.00 | 44.79 | 2.71 |
250 | 252 | 1.837439 | ACATCCGTATGTGGTCCATGT | 59.163 | 47.619 | 0.00 | 0.00 | 44.79 | 3.21 |
251 | 253 | 2.620251 | ACATCCGTATGTGGTCCATG | 57.380 | 50.000 | 0.00 | 0.00 | 44.79 | 3.66 |
260 | 262 | 6.477669 | ACTACGTCTATACACATCCGTATG | 57.522 | 41.667 | 0.00 | 0.00 | 39.17 | 2.39 |
261 | 263 | 7.502120 | AAACTACGTCTATACACATCCGTAT | 57.498 | 36.000 | 0.00 | 0.00 | 36.13 | 3.06 |
262 | 264 | 6.925610 | AAACTACGTCTATACACATCCGTA | 57.074 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
263 | 265 | 5.824904 | AAACTACGTCTATACACATCCGT | 57.175 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
264 | 266 | 7.042187 | ACTCTAAACTACGTCTATACACATCCG | 60.042 | 40.741 | 0.00 | 0.00 | 0.00 | 4.18 |
265 | 267 | 8.068977 | CACTCTAAACTACGTCTATACACATCC | 58.931 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
266 | 268 | 8.610896 | ACACTCTAAACTACGTCTATACACATC | 58.389 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
267 | 269 | 8.503458 | ACACTCTAAACTACGTCTATACACAT | 57.497 | 34.615 | 0.00 | 0.00 | 0.00 | 3.21 |
268 | 270 | 7.912056 | ACACTCTAAACTACGTCTATACACA | 57.088 | 36.000 | 0.00 | 0.00 | 0.00 | 3.72 |
269 | 271 | 9.307121 | TCTACACTCTAAACTACGTCTATACAC | 57.693 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
273 | 275 | 9.610705 | TGAATCTACACTCTAAACTACGTCTAT | 57.389 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
274 | 276 | 8.877779 | GTGAATCTACACTCTAAACTACGTCTA | 58.122 | 37.037 | 0.00 | 0.00 | 37.73 | 2.59 |
275 | 277 | 7.607223 | AGTGAATCTACACTCTAAACTACGTCT | 59.393 | 37.037 | 0.00 | 0.00 | 46.36 | 4.18 |
276 | 278 | 7.750769 | AGTGAATCTACACTCTAAACTACGTC | 58.249 | 38.462 | 0.00 | 0.00 | 46.36 | 4.34 |
277 | 279 | 7.684937 | AGTGAATCTACACTCTAAACTACGT | 57.315 | 36.000 | 0.00 | 0.00 | 46.36 | 3.57 |
289 | 291 | 5.446473 | CGGAGCAAAATGAGTGAATCTACAC | 60.446 | 44.000 | 0.00 | 0.00 | 40.60 | 2.90 |
290 | 292 | 4.631377 | CGGAGCAAAATGAGTGAATCTACA | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
291 | 293 | 4.631813 | ACGGAGCAAAATGAGTGAATCTAC | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
292 | 294 | 4.832248 | ACGGAGCAAAATGAGTGAATCTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
293 | 295 | 3.679389 | ACGGAGCAAAATGAGTGAATCT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
294 | 296 | 5.741388 | ATACGGAGCAAAATGAGTGAATC | 57.259 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
295 | 297 | 8.150945 | ACTATATACGGAGCAAAATGAGTGAAT | 58.849 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
296 | 298 | 7.497595 | ACTATATACGGAGCAAAATGAGTGAA | 58.502 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
297 | 299 | 7.050970 | ACTATATACGGAGCAAAATGAGTGA | 57.949 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
298 | 300 | 6.366332 | GGACTATATACGGAGCAAAATGAGTG | 59.634 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
299 | 301 | 6.041637 | TGGACTATATACGGAGCAAAATGAGT | 59.958 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
300 | 302 | 6.455647 | TGGACTATATACGGAGCAAAATGAG | 58.544 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
301 | 303 | 6.413783 | TGGACTATATACGGAGCAAAATGA | 57.586 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
302 | 304 | 8.948631 | ATATGGACTATATACGGAGCAAAATG | 57.051 | 34.615 | 0.00 | 0.00 | 30.12 | 2.32 |
303 | 305 | 9.383519 | CAATATGGACTATATACGGAGCAAAAT | 57.616 | 33.333 | 0.00 | 0.00 | 31.68 | 1.82 |
304 | 306 | 7.822334 | CCAATATGGACTATATACGGAGCAAAA | 59.178 | 37.037 | 0.00 | 0.00 | 40.96 | 2.44 |
305 | 307 | 7.179516 | TCCAATATGGACTATATACGGAGCAAA | 59.820 | 37.037 | 0.00 | 0.00 | 42.67 | 3.68 |
306 | 308 | 6.666113 | TCCAATATGGACTATATACGGAGCAA | 59.334 | 38.462 | 0.00 | 0.00 | 42.67 | 3.91 |
307 | 309 | 6.192044 | TCCAATATGGACTATATACGGAGCA | 58.808 | 40.000 | 0.00 | 0.00 | 42.67 | 4.26 |
308 | 310 | 6.710597 | TCCAATATGGACTATATACGGAGC | 57.289 | 41.667 | 0.00 | 0.00 | 42.67 | 4.70 |
339 | 341 | 9.813826 | CCCTCCATTCCTAAATATATGTCTTTT | 57.186 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
340 | 342 | 9.182642 | TCCCTCCATTCCTAAATATATGTCTTT | 57.817 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
341 | 343 | 8.757307 | TCCCTCCATTCCTAAATATATGTCTT | 57.243 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
342 | 344 | 7.964293 | ACTCCCTCCATTCCTAAATATATGTCT | 59.036 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
343 | 345 | 8.152023 | ACTCCCTCCATTCCTAAATATATGTC | 57.848 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
344 | 346 | 9.805204 | ATACTCCCTCCATTCCTAAATATATGT | 57.195 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
349 | 351 | 9.112658 | CCTTTATACTCCCTCCATTCCTAAATA | 57.887 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
350 | 352 | 7.799583 | TCCTTTATACTCCCTCCATTCCTAAAT | 59.200 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
351 | 353 | 7.143741 | TCCTTTATACTCCCTCCATTCCTAAA | 58.856 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
352 | 354 | 6.699688 | TCCTTTATACTCCCTCCATTCCTAA | 58.300 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
353 | 355 | 6.303427 | TCCTTTATACTCCCTCCATTCCTA | 57.697 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
354 | 356 | 5.171541 | TCCTTTATACTCCCTCCATTCCT | 57.828 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
355 | 357 | 5.607171 | TCTTCCTTTATACTCCCTCCATTCC | 59.393 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
356 | 358 | 6.749036 | TCTTCCTTTATACTCCCTCCATTC | 57.251 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
357 | 359 | 7.525158 | TTTCTTCCTTTATACTCCCTCCATT | 57.475 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
358 | 360 | 7.525158 | TTTTCTTCCTTTATACTCCCTCCAT | 57.475 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
359 | 361 | 6.963117 | TTTTCTTCCTTTATACTCCCTCCA | 57.037 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
360 | 362 | 9.916360 | TTATTTTTCTTCCTTTATACTCCCTCC | 57.084 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
366 | 368 | 9.475620 | CCCCACTTATTTTTCTTCCTTTATACT | 57.524 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
367 | 369 | 9.470399 | TCCCCACTTATTTTTCTTCCTTTATAC | 57.530 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
432 | 434 | 7.128077 | AGGGATATGGAAATTTATATGCCCAG | 58.872 | 38.462 | 19.94 | 0.00 | 44.31 | 4.45 |
484 | 486 | 1.187715 | CGTGTGTTGTGAAAAAGGCG | 58.812 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
491 | 493 | 4.816925 | TGAATATTGACCGTGTGTTGTGAA | 59.183 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
500 | 502 | 5.758924 | TCTACTCGATGAATATTGACCGTG | 58.241 | 41.667 | 0.00 | 0.00 | 0.00 | 4.94 |
534 | 537 | 0.608130 | TGCTAGTGGTCGCTGTGAAT | 59.392 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
541 | 544 | 2.153913 | CACTTGTGCTAGTGGTCGC | 58.846 | 57.895 | 6.00 | 0.00 | 41.43 | 5.19 |
659 | 666 | 5.135383 | ACTGCAATGCCATATATTGACACT | 58.865 | 37.500 | 1.53 | 0.00 | 37.65 | 3.55 |
676 | 683 | 4.083324 | GCAGCAAAATACTGAGTACTGCAA | 60.083 | 41.667 | 20.53 | 0.00 | 46.45 | 4.08 |
711 | 718 | 8.888716 | TCAATATCACAACATAACATACACACC | 58.111 | 33.333 | 0.00 | 0.00 | 0.00 | 4.16 |
712 | 719 | 9.702726 | GTCAATATCACAACATAACATACACAC | 57.297 | 33.333 | 0.00 | 0.00 | 0.00 | 3.82 |
853 | 1981 | 5.874093 | AGAATGTTGATCACTCCTTTGTCT | 58.126 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
871 | 1999 | 5.088739 | GTGTTGATTTTCAGCCGTAGAATG | 58.911 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
877 | 2005 | 2.290641 | GAGTGTGTTGATTTTCAGCCGT | 59.709 | 45.455 | 0.00 | 0.00 | 0.00 | 5.68 |
878 | 2006 | 2.350772 | GGAGTGTGTTGATTTTCAGCCG | 60.351 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
880 | 2008 | 3.817647 | AGAGGAGTGTGTTGATTTTCAGC | 59.182 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
906 | 2035 | 2.490903 | GCAGAAGGTAAGTAGTGGACGA | 59.509 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
907 | 2036 | 2.230508 | TGCAGAAGGTAAGTAGTGGACG | 59.769 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
908 | 2037 | 3.955650 | TGCAGAAGGTAAGTAGTGGAC | 57.044 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
909 | 2038 | 4.967084 | TTTGCAGAAGGTAAGTAGTGGA | 57.033 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
918 | 2048 | 2.378038 | GGCATGGATTTGCAGAAGGTA | 58.622 | 47.619 | 0.00 | 0.00 | 44.59 | 3.08 |
945 | 2075 | 2.308570 | TCTTTATCCCTGCTTTGGCTGA | 59.691 | 45.455 | 0.00 | 0.00 | 39.31 | 4.26 |
956 | 2086 | 2.501723 | TCTTGCGCTCTTCTTTATCCCT | 59.498 | 45.455 | 9.73 | 0.00 | 0.00 | 4.20 |
964 | 2094 | 0.528017 | TGTCGATCTTGCGCTCTTCT | 59.472 | 50.000 | 9.73 | 0.00 | 0.00 | 2.85 |
966 | 2096 | 1.080995 | GCTGTCGATCTTGCGCTCTT | 61.081 | 55.000 | 9.73 | 0.00 | 0.00 | 2.85 |
969 | 2099 | 1.808799 | CTGCTGTCGATCTTGCGCT | 60.809 | 57.895 | 9.73 | 0.00 | 0.00 | 5.92 |
970 | 2100 | 0.802222 | TACTGCTGTCGATCTTGCGC | 60.802 | 55.000 | 0.00 | 0.00 | 0.00 | 6.09 |
978 | 2108 | 2.404215 | GTTGCTTCTTACTGCTGTCGA | 58.596 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
980 | 2110 | 2.494059 | TGGTTGCTTCTTACTGCTGTC | 58.506 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
1066 | 2196 | 4.479993 | GCTCGGTGGCTCCTGCAT | 62.480 | 66.667 | 13.08 | 0.00 | 41.91 | 3.96 |
1114 | 2244 | 2.748058 | ATCTCAAAACCAGCCGCGGT | 62.748 | 55.000 | 28.70 | 11.01 | 42.71 | 5.68 |
1118 | 2248 | 1.508088 | GGCATCTCAAAACCAGCCG | 59.492 | 57.895 | 0.00 | 0.00 | 31.88 | 5.52 |
1127 | 2257 | 1.347707 | GTATGGGATCGGGCATCTCAA | 59.652 | 52.381 | 0.00 | 0.00 | 45.72 | 3.02 |
1167 | 2297 | 0.816825 | CAGCACAGTTGGCAGACAGT | 60.817 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1221 | 2357 | 1.061546 | TTACCAGGAACAGACCCCAC | 58.938 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1227 | 2363 | 5.374071 | GGAGAAAACTTTACCAGGAACAGA | 58.626 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1458 | 4919 | 3.006247 | GTCCAGGATTTGCTTCTCTGAC | 58.994 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1470 | 4931 | 0.693049 | GGTCACACCAGTCCAGGATT | 59.307 | 55.000 | 0.00 | 0.00 | 38.42 | 3.01 |
1568 | 5029 | 4.575885 | TGAAGTACAAGCCTGAATGGTAC | 58.424 | 43.478 | 0.00 | 0.00 | 38.35 | 3.34 |
1593 | 5054 | 2.159476 | CGGTCGACACCCATATATACCG | 60.159 | 54.545 | 18.91 | 3.30 | 40.01 | 4.02 |
2046 | 7403 | 3.787001 | ACTGCGCTAAGGCTCCCC | 61.787 | 66.667 | 9.73 | 0.00 | 36.09 | 4.81 |
2048 | 7405 | 1.956629 | TACCACTGCGCTAAGGCTCC | 61.957 | 60.000 | 9.73 | 0.00 | 36.09 | 4.70 |
2050 | 7407 | 0.323629 | TTTACCACTGCGCTAAGGCT | 59.676 | 50.000 | 9.73 | 1.47 | 36.09 | 4.58 |
2051 | 7408 | 0.727398 | CTTTACCACTGCGCTAAGGC | 59.273 | 55.000 | 9.73 | 0.00 | 0.00 | 4.35 |
2052 | 7409 | 0.727398 | GCTTTACCACTGCGCTAAGG | 59.273 | 55.000 | 9.73 | 10.10 | 0.00 | 2.69 |
2054 | 7411 | 1.438651 | CAGCTTTACCACTGCGCTAA | 58.561 | 50.000 | 9.73 | 0.00 | 0.00 | 3.09 |
2055 | 7412 | 3.137484 | CAGCTTTACCACTGCGCTA | 57.863 | 52.632 | 9.73 | 0.00 | 0.00 | 4.26 |
2056 | 7413 | 3.972227 | CAGCTTTACCACTGCGCT | 58.028 | 55.556 | 9.73 | 0.00 | 0.00 | 5.92 |
2060 | 7417 | 0.607489 | AGGCAGCAGCTTTACCACTG | 60.607 | 55.000 | 0.00 | 0.00 | 41.70 | 3.66 |
2063 | 7420 | 0.178992 | ACAAGGCAGCAGCTTTACCA | 60.179 | 50.000 | 0.00 | 0.00 | 38.07 | 3.25 |
2064 | 7421 | 0.242017 | CACAAGGCAGCAGCTTTACC | 59.758 | 55.000 | 0.00 | 0.00 | 38.07 | 2.85 |
2066 | 7423 | 1.238439 | GTCACAAGGCAGCAGCTTTA | 58.762 | 50.000 | 0.00 | 0.00 | 38.07 | 1.85 |
2067 | 7424 | 1.458639 | GGTCACAAGGCAGCAGCTTT | 61.459 | 55.000 | 0.00 | 0.00 | 41.17 | 3.51 |
2068 | 7425 | 1.900498 | GGTCACAAGGCAGCAGCTT | 60.900 | 57.895 | 0.00 | 0.00 | 41.70 | 3.74 |
2069 | 7426 | 2.282040 | GGTCACAAGGCAGCAGCT | 60.282 | 61.111 | 0.00 | 0.00 | 41.70 | 4.24 |
2071 | 7428 | 0.607217 | TCATGGTCACAAGGCAGCAG | 60.607 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
2072 | 7429 | 0.607217 | CTCATGGTCACAAGGCAGCA | 60.607 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2073 | 7430 | 1.310933 | CCTCATGGTCACAAGGCAGC | 61.311 | 60.000 | 0.00 | 0.00 | 0.00 | 5.25 |
2074 | 7431 | 0.037303 | ACCTCATGGTCACAAGGCAG | 59.963 | 55.000 | 0.00 | 0.00 | 44.78 | 4.85 |
2075 | 7432 | 2.154139 | ACCTCATGGTCACAAGGCA | 58.846 | 52.632 | 0.00 | 0.00 | 44.78 | 4.75 |
2086 | 7443 | 1.270839 | ACTTGAACCCGTGACCTCATG | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 3.07 |
2087 | 7444 | 1.002087 | GACTTGAACCCGTGACCTCAT | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
2088 | 7445 | 0.391597 | GACTTGAACCCGTGACCTCA | 59.608 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2089 | 7446 | 0.320508 | GGACTTGAACCCGTGACCTC | 60.321 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2090 | 7447 | 0.763223 | AGGACTTGAACCCGTGACCT | 60.763 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2091 | 7448 | 0.602905 | CAGGACTTGAACCCGTGACC | 60.603 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2092 | 7449 | 0.602905 | CCAGGACTTGAACCCGTGAC | 60.603 | 60.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2093 | 7450 | 0.761323 | TCCAGGACTTGAACCCGTGA | 60.761 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2094 | 7451 | 0.107831 | TTCCAGGACTTGAACCCGTG | 59.892 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2095 | 7452 | 0.841289 | TTTCCAGGACTTGAACCCGT | 59.159 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2096 | 7453 | 1.235724 | GTTTCCAGGACTTGAACCCG | 58.764 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2097 | 7454 | 2.230660 | CTGTTTCCAGGACTTGAACCC | 58.769 | 52.381 | 0.00 | 0.00 | 34.90 | 4.11 |
2098 | 7455 | 1.609072 | GCTGTTTCCAGGACTTGAACC | 59.391 | 52.381 | 0.00 | 0.00 | 39.22 | 3.62 |
2099 | 7456 | 1.609072 | GGCTGTTTCCAGGACTTGAAC | 59.391 | 52.381 | 0.00 | 0.00 | 39.22 | 3.18 |
2100 | 7457 | 1.494721 | AGGCTGTTTCCAGGACTTGAA | 59.505 | 47.619 | 0.00 | 0.00 | 39.22 | 2.69 |
2101 | 7458 | 1.072331 | GAGGCTGTTTCCAGGACTTGA | 59.928 | 52.381 | 0.00 | 0.00 | 39.22 | 3.02 |
2102 | 7459 | 1.072965 | AGAGGCTGTTTCCAGGACTTG | 59.927 | 52.381 | 0.00 | 0.00 | 39.22 | 3.16 |
2103 | 7460 | 1.439543 | AGAGGCTGTTTCCAGGACTT | 58.560 | 50.000 | 0.00 | 0.00 | 39.22 | 3.01 |
2104 | 7461 | 1.439543 | AAGAGGCTGTTTCCAGGACT | 58.560 | 50.000 | 0.00 | 0.00 | 39.22 | 3.85 |
2105 | 7462 | 2.038557 | TGTAAGAGGCTGTTTCCAGGAC | 59.961 | 50.000 | 0.90 | 0.00 | 39.22 | 3.85 |
2106 | 7463 | 2.303022 | CTGTAAGAGGCTGTTTCCAGGA | 59.697 | 50.000 | 0.90 | 0.00 | 35.89 | 3.86 |
2107 | 7464 | 2.303022 | TCTGTAAGAGGCTGTTTCCAGG | 59.697 | 50.000 | 17.71 | 5.83 | 38.67 | 4.45 |
2120 | 7477 | 5.250774 | AGCCTTTCCCTACATTTCTGTAAGA | 59.749 | 40.000 | 0.00 | 0.00 | 44.68 | 2.10 |
2123 | 7480 | 4.843728 | CAGCCTTTCCCTACATTTCTGTA | 58.156 | 43.478 | 0.00 | 0.00 | 36.79 | 2.74 |
2124 | 7481 | 3.690460 | CAGCCTTTCCCTACATTTCTGT | 58.310 | 45.455 | 0.00 | 0.00 | 39.49 | 3.41 |
2125 | 7482 | 2.424956 | GCAGCCTTTCCCTACATTTCTG | 59.575 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2126 | 7483 | 2.728007 | GCAGCCTTTCCCTACATTTCT | 58.272 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
2128 | 7485 | 1.271926 | ACGCAGCCTTTCCCTACATTT | 60.272 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
2129 | 7486 | 0.328258 | ACGCAGCCTTTCCCTACATT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2131 | 7488 | 0.248289 | GTACGCAGCCTTTCCCTACA | 59.752 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2134 | 7491 | 0.328258 | ATTGTACGCAGCCTTTCCCT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2139 | 7496 | 1.134491 | GGGTCTATTGTACGCAGCCTT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
2143 | 7500 | 3.370978 | CACTTTGGGTCTATTGTACGCAG | 59.629 | 47.826 | 0.00 | 0.00 | 40.36 | 5.18 |
2144 | 7501 | 3.331150 | CACTTTGGGTCTATTGTACGCA | 58.669 | 45.455 | 0.00 | 0.00 | 37.94 | 5.24 |
2162 | 7535 | 2.606826 | GGGAAGGGTCCGACCACT | 60.607 | 66.667 | 19.43 | 10.80 | 46.04 | 4.00 |
2163 | 7536 | 3.714001 | GGGGAAGGGTCCGACCAC | 61.714 | 72.222 | 19.43 | 8.70 | 46.04 | 4.16 |
2164 | 7537 | 4.257810 | TGGGGAAGGGTCCGACCA | 62.258 | 66.667 | 19.43 | 0.00 | 46.04 | 4.02 |
2165 | 7538 | 3.400054 | CTGGGGAAGGGTCCGACC | 61.400 | 72.222 | 9.30 | 9.30 | 46.04 | 4.79 |
2166 | 7539 | 2.284405 | TCTGGGGAAGGGTCCGAC | 60.284 | 66.667 | 0.00 | 0.00 | 46.04 | 4.79 |
2167 | 7540 | 2.284405 | GTCTGGGGAAGGGTCCGA | 60.284 | 66.667 | 0.00 | 0.00 | 46.04 | 4.55 |
2168 | 7541 | 3.400054 | GGTCTGGGGAAGGGTCCG | 61.400 | 72.222 | 0.00 | 0.00 | 46.04 | 4.79 |
2169 | 7542 | 3.015753 | GGGTCTGGGGAAGGGTCC | 61.016 | 72.222 | 0.00 | 0.00 | 44.10 | 4.46 |
2171 | 7544 | 2.204151 | CAGGGTCTGGGGAAGGGT | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
2173 | 7546 | 4.101448 | CGCAGGGTCTGGGGAAGG | 62.101 | 72.222 | 4.35 | 0.00 | 40.11 | 3.46 |
2174 | 7547 | 4.785453 | GCGCAGGGTCTGGGGAAG | 62.785 | 72.222 | 0.30 | 0.00 | 43.28 | 3.46 |
2189 | 7562 | 2.202932 | ATGTAGCTCCCGCTTGCG | 60.203 | 61.111 | 8.14 | 8.14 | 46.47 | 4.85 |
2191 | 7564 | 1.450134 | TGCATGTAGCTCCCGCTTG | 60.450 | 57.895 | 0.00 | 0.00 | 46.47 | 4.01 |
2192 | 7565 | 1.450312 | GTGCATGTAGCTCCCGCTT | 60.450 | 57.895 | 0.00 | 0.00 | 46.47 | 4.68 |
2194 | 7567 | 2.176273 | CAGTGCATGTAGCTCCCGC | 61.176 | 63.158 | 0.00 | 0.00 | 45.94 | 6.13 |
2196 | 7569 | 1.153086 | CCCAGTGCATGTAGCTCCC | 60.153 | 63.158 | 0.00 | 0.00 | 45.94 | 4.30 |
2198 | 7571 | 1.821332 | GCCCCAGTGCATGTAGCTC | 60.821 | 63.158 | 0.00 | 0.00 | 45.94 | 4.09 |
2199 | 7572 | 2.273449 | GCCCCAGTGCATGTAGCT | 59.727 | 61.111 | 0.00 | 0.00 | 45.94 | 3.32 |
2201 | 7574 | 2.117156 | GCAGCCCCAGTGCATGTAG | 61.117 | 63.158 | 0.00 | 0.00 | 40.86 | 2.74 |
2202 | 7575 | 2.045045 | GCAGCCCCAGTGCATGTA | 60.045 | 61.111 | 0.00 | 0.00 | 40.86 | 2.29 |
2213 | 7586 | 0.251608 | TCAGTTTAAAGGGGCAGCCC | 60.252 | 55.000 | 24.23 | 24.23 | 44.51 | 5.19 |
2214 | 7587 | 1.177401 | CTCAGTTTAAAGGGGCAGCC | 58.823 | 55.000 | 1.26 | 1.26 | 0.00 | 4.85 |
2216 | 7589 | 3.222603 | ACAACTCAGTTTAAAGGGGCAG | 58.777 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
2217 | 7590 | 3.306472 | ACAACTCAGTTTAAAGGGGCA | 57.694 | 42.857 | 0.00 | 0.00 | 0.00 | 5.36 |
2218 | 7591 | 5.777850 | TTTACAACTCAGTTTAAAGGGGC | 57.222 | 39.130 | 0.00 | 0.00 | 0.00 | 5.80 |
2219 | 7592 | 7.761038 | AGATTTACAACTCAGTTTAAAGGGG | 57.239 | 36.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2221 | 7594 | 8.352942 | AGCAAGATTTACAACTCAGTTTAAAGG | 58.647 | 33.333 | 0.00 | 0.00 | 0.00 | 3.11 |
2225 | 7598 | 9.555727 | AAGTAGCAAGATTTACAACTCAGTTTA | 57.444 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
2226 | 7599 | 8.451908 | AAGTAGCAAGATTTACAACTCAGTTT | 57.548 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
2227 | 7600 | 7.715249 | TGAAGTAGCAAGATTTACAACTCAGTT | 59.285 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2228 | 7601 | 7.217200 | TGAAGTAGCAAGATTTACAACTCAGT | 58.783 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
2229 | 7602 | 7.658179 | TGAAGTAGCAAGATTTACAACTCAG | 57.342 | 36.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2230 | 7603 | 8.097038 | AGATGAAGTAGCAAGATTTACAACTCA | 58.903 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2231 | 7604 | 8.386606 | CAGATGAAGTAGCAAGATTTACAACTC | 58.613 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2232 | 7605 | 8.097038 | TCAGATGAAGTAGCAAGATTTACAACT | 58.903 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2233 | 7606 | 8.171840 | GTCAGATGAAGTAGCAAGATTTACAAC | 58.828 | 37.037 | 0.00 | 0.00 | 0.00 | 3.32 |
2234 | 7607 | 7.877612 | TGTCAGATGAAGTAGCAAGATTTACAA | 59.122 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2235 | 7608 | 7.331934 | GTGTCAGATGAAGTAGCAAGATTTACA | 59.668 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
2236 | 7609 | 7.331934 | TGTGTCAGATGAAGTAGCAAGATTTAC | 59.668 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
2237 | 7610 | 7.386059 | TGTGTCAGATGAAGTAGCAAGATTTA | 58.614 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2238 | 7611 | 6.233434 | TGTGTCAGATGAAGTAGCAAGATTT | 58.767 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2240 | 7613 | 5.411831 | TGTGTCAGATGAAGTAGCAAGAT | 57.588 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
2241 | 7614 | 4.871933 | TGTGTCAGATGAAGTAGCAAGA | 57.128 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
2244 | 7617 | 5.418840 | TCTGTATGTGTCAGATGAAGTAGCA | 59.581 | 40.000 | 0.00 | 0.00 | 37.07 | 3.49 |
2520 | 7899 | 6.092122 | CACCGCAATTAATCTTCTACACTTCA | 59.908 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2539 | 7918 | 2.779755 | AGAAATATCACCACACCGCA | 57.220 | 45.000 | 0.00 | 0.00 | 0.00 | 5.69 |
2542 | 7921 | 3.378427 | GCTGGAAGAAATATCACCACACC | 59.622 | 47.826 | 0.00 | 0.00 | 34.07 | 4.16 |
2543 | 7922 | 3.063997 | CGCTGGAAGAAATATCACCACAC | 59.936 | 47.826 | 0.00 | 0.00 | 34.07 | 3.82 |
2600 | 7979 | 8.826710 | TCATAGCACATTATTTTTAGAAGGTCG | 58.173 | 33.333 | 0.00 | 0.00 | 0.00 | 4.79 |
2684 | 8063 | 3.930848 | GTGATGTAGAACAACGGGGTAAG | 59.069 | 47.826 | 0.00 | 0.00 | 0.00 | 2.34 |
2711 | 8090 | 5.413309 | AGGAAGACAGTAAACCAGAGATG | 57.587 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
2754 | 8141 | 4.556501 | GCAAGAACGAATTTGTGGATGTCA | 60.557 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
2857 | 8257 | 6.978674 | TTATCCTGGTCTGGTATGTCTTAG | 57.021 | 41.667 | 0.00 | 0.00 | 0.00 | 2.18 |
2858 | 8258 | 7.073208 | TGATTATCCTGGTCTGGTATGTCTTA | 58.927 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
2891 | 8294 | 7.981789 | TCACTGAATCATGTTCATACCTTCTAC | 59.018 | 37.037 | 10.00 | 0.00 | 0.00 | 2.59 |
2960 | 8363 | 6.160576 | TGAAAGCTTTGATATTTATGGCCC | 57.839 | 37.500 | 18.30 | 0.00 | 0.00 | 5.80 |
3002 | 8862 | 8.547173 | AGGATGAAAGATCTGTTTGAGTAGATT | 58.453 | 33.333 | 0.00 | 0.00 | 33.97 | 2.40 |
3048 | 8908 | 6.953101 | TGTAATTCAAGGTCAGGCTAATGTA | 58.047 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3085 | 8948 | 0.639943 | TCTACATAGGAGGGGCCACA | 59.360 | 55.000 | 8.31 | 0.00 | 40.02 | 4.17 |
3113 | 8976 | 9.282247 | CATCATACTGAACTTACATTTTTCTGC | 57.718 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
3135 | 8998 | 3.888583 | TGCTGAAATGGATAGCACATCA | 58.111 | 40.909 | 0.00 | 0.00 | 42.05 | 3.07 |
3136 | 8999 | 4.337555 | ACTTGCTGAAATGGATAGCACATC | 59.662 | 41.667 | 0.00 | 0.00 | 46.10 | 3.06 |
3137 | 9000 | 4.275810 | ACTTGCTGAAATGGATAGCACAT | 58.724 | 39.130 | 0.00 | 0.00 | 46.10 | 3.21 |
3146 | 9009 | 8.034215 | TGGTTCATATTTAACTTGCTGAAATGG | 58.966 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3282 | 9145 | 2.159707 | CGACGTTTTCTTGTATGGGCTG | 60.160 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3284 | 9147 | 1.802365 | ACGACGTTTTCTTGTATGGGC | 59.198 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
3285 | 9148 | 3.364565 | CCAACGACGTTTTCTTGTATGGG | 60.365 | 47.826 | 11.24 | 1.17 | 0.00 | 4.00 |
3286 | 9149 | 3.249080 | ACCAACGACGTTTTCTTGTATGG | 59.751 | 43.478 | 11.24 | 9.19 | 0.00 | 2.74 |
3348 | 9211 | 5.479027 | TGAGCACATGACACTAGGTACTAAA | 59.521 | 40.000 | 0.00 | 0.00 | 42.17 | 1.85 |
3376 | 9239 | 3.587061 | TGAGATTAAGTGTCACCATGGGT | 59.413 | 43.478 | 18.09 | 0.00 | 35.62 | 4.51 |
3401 | 9264 | 5.208463 | TGGCACTTTAAGAAAACATTCCC | 57.792 | 39.130 | 0.00 | 0.00 | 0.00 | 3.97 |
3429 | 9292 | 8.711170 | AGGATCACCCTCGTTAAAATAGAATTA | 58.289 | 33.333 | 0.00 | 0.00 | 43.31 | 1.40 |
3433 | 9296 | 7.664552 | TTAGGATCACCCTCGTTAAAATAGA | 57.335 | 36.000 | 0.00 | 0.00 | 43.31 | 1.98 |
3453 | 9316 | 9.849166 | TCTTTTGTTCTGTTAAGTTTGTTTAGG | 57.151 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
3459 | 9328 | 9.191995 | ACAGTTTCTTTTGTTCTGTTAAGTTTG | 57.808 | 29.630 | 0.00 | 0.00 | 36.17 | 2.93 |

Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.