Multiple sequence alignment - TraesCS7B01G041400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G041400 chr7B 100.000 3225 0 0 1 3225 41046378 41049602 0.000000e+00 5956
1 TraesCS7B01G041400 chr1B 97.355 2647 34 4 610 3225 668657476 668660117 0.000000e+00 4468
2 TraesCS7B01G041400 chr1B 97.479 2539 53 10 610 3142 460164087 460161554 0.000000e+00 4324
3 TraesCS7B01G041400 chr1B 96.788 2553 59 17 608 3142 544798312 544795765 0.000000e+00 4239
4 TraesCS7B01G041400 chr1B 96.885 2536 64 3 608 3142 569427322 569429843 0.000000e+00 4231
5 TraesCS7B01G041400 chr1B 97.014 2512 70 4 610 3119 94936277 94933769 0.000000e+00 4218
6 TraesCS7B01G041400 chr1B 100.000 66 0 0 3160 3225 460161497 460161432 4.370000e-24 122
7 TraesCS7B01G041400 chr1B 98.485 66 1 0 3160 3225 569429932 569429997 2.030000e-22 117
8 TraesCS7B01G041400 chr1B 100.000 27 0 0 3124 3150 569429863 569429889 2.100000e-02 51
9 TraesCS7B01G041400 chr5B 96.639 2648 35 4 609 3225 621306286 621303662 0.000000e+00 4348
10 TraesCS7B01G041400 chr5B 98.485 66 1 0 3160 3225 24142007 24141942 2.030000e-22 117
11 TraesCS7B01G041400 chr2B 97.399 2537 46 8 610 3142 69351989 69354509 0.000000e+00 4301
12 TraesCS7B01G041400 chr2B 96.619 2544 71 12 609 3142 23131088 23133626 0.000000e+00 4207
13 TraesCS7B01G041400 chr2B 84.160 625 67 10 1 622 185771175 185770580 7.760000e-161 577
14 TraesCS7B01G041400 chr2B 85.336 491 41 13 1 489 186363054 186363515 2.250000e-131 479
15 TraesCS7B01G041400 chr2B 83.221 149 13 7 3006 3150 23133532 23133672 3.380000e-25 126
16 TraesCS7B01G041400 chr6B 97.244 2540 49 4 610 3142 661538893 661541418 0.000000e+00 4283
17 TraesCS7B01G041400 chr6B 97.093 688 16 3 2364 3047 40796463 40795776 0.000000e+00 1157
18 TraesCS7B01G041400 chr6B 100.000 75 0 0 3076 3150 661541393 661541467 4.340000e-29 139
19 TraesCS7B01G041400 chr6B 100.000 66 0 0 3160 3225 661541510 661541575 4.370000e-24 122
20 TraesCS7B01G041400 chr7D 91.578 1508 69 24 1631 3119 526289337 526290805 0.000000e+00 2028
21 TraesCS7B01G041400 chr7D 89.773 616 38 3 1 616 89943698 89944288 0.000000e+00 765
22 TraesCS7B01G041400 chr4B 94.098 881 18 7 2363 3225 654072238 654071374 0.000000e+00 1308
23 TraesCS7B01G041400 chr4B 98.485 66 1 0 3160 3225 657802717 657802652 2.030000e-22 117
24 TraesCS7B01G041400 chr7A 88.673 618 42 5 1 616 91507191 91507782 0.000000e+00 728
25 TraesCS7B01G041400 chr7A 98.507 67 1 0 3159 3225 147917647 147917581 5.650000e-23 119
26 TraesCS7B01G041400 chr2A 87.008 508 60 5 119 622 139510373 139509868 4.670000e-158 568
27 TraesCS7B01G041400 chr2D 87.097 496 59 3 132 622 131766598 131766103 1.010000e-154 556
28 TraesCS7B01G041400 chr6A 98.507 67 1 0 3159 3225 162657180 162657246 5.650000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G041400 chr7B 41046378 41049602 3224 False 5956.000000 5956 100.000000 1 3225 1 chr7B.!!$F1 3224
1 TraesCS7B01G041400 chr1B 668657476 668660117 2641 False 4468.000000 4468 97.355000 610 3225 1 chr1B.!!$F1 2615
2 TraesCS7B01G041400 chr1B 544795765 544798312 2547 True 4239.000000 4239 96.788000 608 3142 1 chr1B.!!$R2 2534
3 TraesCS7B01G041400 chr1B 94933769 94936277 2508 True 4218.000000 4218 97.014000 610 3119 1 chr1B.!!$R1 2509
4 TraesCS7B01G041400 chr1B 460161432 460164087 2655 True 2223.000000 4324 98.739500 610 3225 2 chr1B.!!$R3 2615
5 TraesCS7B01G041400 chr1B 569427322 569429997 2675 False 1466.333333 4231 98.456667 608 3225 3 chr1B.!!$F2 2617
6 TraesCS7B01G041400 chr5B 621303662 621306286 2624 True 4348.000000 4348 96.639000 609 3225 1 chr5B.!!$R2 2616
7 TraesCS7B01G041400 chr2B 69351989 69354509 2520 False 4301.000000 4301 97.399000 610 3142 1 chr2B.!!$F1 2532
8 TraesCS7B01G041400 chr2B 23131088 23133672 2584 False 2166.500000 4207 89.920000 609 3150 2 chr2B.!!$F3 2541
9 TraesCS7B01G041400 chr2B 185770580 185771175 595 True 577.000000 577 84.160000 1 622 1 chr2B.!!$R1 621
10 TraesCS7B01G041400 chr6B 661538893 661541575 2682 False 1514.666667 4283 99.081333 610 3225 3 chr6B.!!$F1 2615
11 TraesCS7B01G041400 chr6B 40795776 40796463 687 True 1157.000000 1157 97.093000 2364 3047 1 chr6B.!!$R1 683
12 TraesCS7B01G041400 chr7D 526289337 526290805 1468 False 2028.000000 2028 91.578000 1631 3119 1 chr7D.!!$F2 1488
13 TraesCS7B01G041400 chr7D 89943698 89944288 590 False 765.000000 765 89.773000 1 616 1 chr7D.!!$F1 615
14 TraesCS7B01G041400 chr4B 654071374 654072238 864 True 1308.000000 1308 94.098000 2363 3225 1 chr4B.!!$R1 862
15 TraesCS7B01G041400 chr7A 91507191 91507782 591 False 728.000000 728 88.673000 1 616 1 chr7A.!!$F1 615
16 TraesCS7B01G041400 chr2A 139509868 139510373 505 True 568.000000 568 87.008000 119 622 1 chr2A.!!$R1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 412 0.038599 AGCATCCATCCAGCAACACA 59.961 50.0 0.00 0.0 0.00 3.72 F
468 471 0.108945 GCACTCCAAGATTGCAAGGC 60.109 55.0 4.94 0.0 37.98 4.35 F
470 473 0.112995 ACTCCAAGATTGCAAGGCCA 59.887 50.0 5.01 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 1832 3.470709 CTGCTCAAACTTCTCCTTGTCA 58.529 45.455 0.0 0.0 0.0 3.58 R
2008 2081 5.477510 TCTTTTGCAAGTTTGAGCTTTTCA 58.522 33.333 0.0 0.0 0.0 2.69 R
2285 2358 7.290714 ACCCATAATTACTTGAAATCATGCCAT 59.709 33.333 0.0 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 3.906720 TCTTGGCCACAATAGAGGTAC 57.093 47.619 3.88 0.00 35.73 3.34
118 119 9.819267 AAAAATAATTTGGTCGTACCTCAAAAA 57.181 25.926 6.90 0.00 39.58 1.94
151 152 6.267242 TGGTCATTTCCATGATTCTGTTTTCA 59.733 34.615 0.00 0.00 41.64 2.69
226 229 4.178540 TCGGTGGTCGTGAAATTATCTTC 58.821 43.478 0.00 0.00 40.32 2.87
353 356 2.530406 CCTCCTCCCATAGGCCCC 60.530 72.222 0.00 0.00 46.10 5.80
355 358 1.385915 CTCCTCCCATAGGCCCCAA 60.386 63.158 0.00 0.00 46.10 4.12
366 369 1.078347 GGCCCCAAACCAAGGATCA 59.922 57.895 0.00 0.00 0.00 2.92
394 397 2.574006 TGAAAGGTCTTCTGCAGCAT 57.426 45.000 9.47 0.00 0.00 3.79
409 412 0.038599 AGCATCCATCCAGCAACACA 59.961 50.000 0.00 0.00 0.00 3.72
417 420 3.311106 CATCCAGCAACACAATCACAAC 58.689 45.455 0.00 0.00 0.00 3.32
418 421 1.680735 TCCAGCAACACAATCACAACC 59.319 47.619 0.00 0.00 0.00 3.77
419 422 1.408340 CCAGCAACACAATCACAACCA 59.592 47.619 0.00 0.00 0.00 3.67
420 423 2.159128 CCAGCAACACAATCACAACCAA 60.159 45.455 0.00 0.00 0.00 3.67
421 424 3.117794 CAGCAACACAATCACAACCAAG 58.882 45.455 0.00 0.00 0.00 3.61
422 425 1.860326 GCAACACAATCACAACCAAGC 59.140 47.619 0.00 0.00 0.00 4.01
423 426 2.481795 GCAACACAATCACAACCAAGCT 60.482 45.455 0.00 0.00 0.00 3.74
424 427 3.784338 CAACACAATCACAACCAAGCTT 58.216 40.909 0.00 0.00 0.00 3.74
425 428 3.715628 ACACAATCACAACCAAGCTTC 57.284 42.857 0.00 0.00 0.00 3.86
426 429 2.362077 ACACAATCACAACCAAGCTTCC 59.638 45.455 0.00 0.00 0.00 3.46
427 430 2.624838 CACAATCACAACCAAGCTTCCT 59.375 45.455 0.00 0.00 0.00 3.36
428 431 2.887152 ACAATCACAACCAAGCTTCCTC 59.113 45.455 0.00 0.00 0.00 3.71
429 432 3.152341 CAATCACAACCAAGCTTCCTCT 58.848 45.455 0.00 0.00 0.00 3.69
430 433 2.550830 TCACAACCAAGCTTCCTCTC 57.449 50.000 0.00 0.00 0.00 3.20
431 434 1.072331 TCACAACCAAGCTTCCTCTCC 59.928 52.381 0.00 0.00 0.00 3.71
432 435 0.402121 ACAACCAAGCTTCCTCTCCC 59.598 55.000 0.00 0.00 0.00 4.30
433 436 0.401738 CAACCAAGCTTCCTCTCCCA 59.598 55.000 0.00 0.00 0.00 4.37
434 437 0.402121 AACCAAGCTTCCTCTCCCAC 59.598 55.000 0.00 0.00 0.00 4.61
435 438 0.768221 ACCAAGCTTCCTCTCCCACA 60.768 55.000 0.00 0.00 0.00 4.17
436 439 0.622665 CCAAGCTTCCTCTCCCACAT 59.377 55.000 0.00 0.00 0.00 3.21
437 440 1.005215 CCAAGCTTCCTCTCCCACATT 59.995 52.381 0.00 0.00 0.00 2.71
438 441 2.556114 CCAAGCTTCCTCTCCCACATTT 60.556 50.000 0.00 0.00 0.00 2.32
439 442 2.490903 CAAGCTTCCTCTCCCACATTTG 59.509 50.000 0.00 0.00 0.00 2.32
440 443 1.005215 AGCTTCCTCTCCCACATTTGG 59.995 52.381 0.00 0.00 43.50 3.28
454 457 5.347012 CACATTTGGAATTTTTGGCACTC 57.653 39.130 0.00 0.00 0.00 3.51
455 458 4.213906 CACATTTGGAATTTTTGGCACTCC 59.786 41.667 0.00 0.00 0.00 3.85
456 459 4.141528 ACATTTGGAATTTTTGGCACTCCA 60.142 37.500 0.00 0.00 41.55 3.86
464 467 3.435846 TTGGCACTCCAAGATTGCA 57.564 47.368 8.85 0.00 46.89 4.08
465 468 1.702182 TTGGCACTCCAAGATTGCAA 58.298 45.000 0.00 0.00 46.89 4.08
466 469 1.250328 TGGCACTCCAAGATTGCAAG 58.750 50.000 4.94 0.00 39.47 4.01
467 470 0.529378 GGCACTCCAAGATTGCAAGG 59.471 55.000 4.94 0.00 39.47 3.61
468 471 0.108945 GCACTCCAAGATTGCAAGGC 60.109 55.000 4.94 0.00 37.98 4.35
469 472 0.529378 CACTCCAAGATTGCAAGGCC 59.471 55.000 4.94 0.00 0.00 5.19
470 473 0.112995 ACTCCAAGATTGCAAGGCCA 59.887 50.000 5.01 0.00 0.00 5.36
471 474 1.259609 CTCCAAGATTGCAAGGCCAA 58.740 50.000 5.01 0.00 0.00 4.52
472 475 1.829222 CTCCAAGATTGCAAGGCCAAT 59.171 47.619 5.01 0.00 38.09 3.16
473 476 3.025978 CTCCAAGATTGCAAGGCCAATA 58.974 45.455 5.01 0.00 35.67 1.90
474 477 2.760092 TCCAAGATTGCAAGGCCAATAC 59.240 45.455 5.01 0.00 35.67 1.89
475 478 2.762327 CCAAGATTGCAAGGCCAATACT 59.238 45.455 5.01 0.00 35.67 2.12
476 479 3.429822 CCAAGATTGCAAGGCCAATACTG 60.430 47.826 5.01 0.00 35.67 2.74
477 480 3.091633 AGATTGCAAGGCCAATACTGT 57.908 42.857 5.01 0.00 35.67 3.55
478 481 3.019564 AGATTGCAAGGCCAATACTGTC 58.980 45.455 5.01 0.00 35.67 3.51
479 482 2.284754 TTGCAAGGCCAATACTGTCA 57.715 45.000 5.01 0.00 0.00 3.58
480 483 2.512692 TGCAAGGCCAATACTGTCAT 57.487 45.000 5.01 0.00 0.00 3.06
481 484 2.368439 TGCAAGGCCAATACTGTCATC 58.632 47.619 5.01 0.00 0.00 2.92
482 485 2.290832 TGCAAGGCCAATACTGTCATCA 60.291 45.455 5.01 0.00 0.00 3.07
483 486 2.954318 GCAAGGCCAATACTGTCATCAT 59.046 45.455 5.01 0.00 0.00 2.45
484 487 3.004106 GCAAGGCCAATACTGTCATCATC 59.996 47.826 5.01 0.00 0.00 2.92
485 488 4.458397 CAAGGCCAATACTGTCATCATCT 58.542 43.478 5.01 0.00 0.00 2.90
486 489 4.082665 AGGCCAATACTGTCATCATCTG 57.917 45.455 5.01 0.00 0.00 2.90
487 490 3.457380 AGGCCAATACTGTCATCATCTGT 59.543 43.478 5.01 0.00 0.00 3.41
488 491 3.812053 GGCCAATACTGTCATCATCTGTC 59.188 47.826 0.00 0.00 0.00 3.51
489 492 3.812053 GCCAATACTGTCATCATCTGTCC 59.188 47.826 0.00 0.00 0.00 4.02
490 493 4.053983 CCAATACTGTCATCATCTGTCCG 58.946 47.826 0.00 0.00 0.00 4.79
491 494 2.871182 TACTGTCATCATCTGTCCGC 57.129 50.000 0.00 0.00 0.00 5.54
492 495 0.897621 ACTGTCATCATCTGTCCGCA 59.102 50.000 0.00 0.00 0.00 5.69
493 496 1.276138 ACTGTCATCATCTGTCCGCAA 59.724 47.619 0.00 0.00 0.00 4.85
494 497 1.931841 CTGTCATCATCTGTCCGCAAG 59.068 52.381 0.00 0.00 0.00 4.01
495 498 1.550072 TGTCATCATCTGTCCGCAAGA 59.450 47.619 0.00 0.00 43.02 3.02
496 499 2.169144 TGTCATCATCTGTCCGCAAGAT 59.831 45.455 0.00 0.00 43.02 2.40
497 500 2.799412 GTCATCATCTGTCCGCAAGATC 59.201 50.000 0.00 0.00 43.02 2.75
498 501 2.697229 TCATCATCTGTCCGCAAGATCT 59.303 45.455 0.00 0.00 43.02 2.75
499 502 3.133542 TCATCATCTGTCCGCAAGATCTT 59.866 43.478 0.88 0.88 43.02 2.40
500 503 4.342092 TCATCATCTGTCCGCAAGATCTTA 59.658 41.667 7.86 0.00 43.02 2.10
501 504 4.736126 TCATCTGTCCGCAAGATCTTAA 57.264 40.909 7.86 0.00 43.02 1.85
502 505 5.084818 TCATCTGTCCGCAAGATCTTAAA 57.915 39.130 7.86 0.00 43.02 1.52
503 506 5.111989 TCATCTGTCCGCAAGATCTTAAAG 58.888 41.667 7.86 2.49 43.02 1.85
504 507 3.262420 TCTGTCCGCAAGATCTTAAAGC 58.738 45.455 7.86 6.92 43.02 3.51
505 508 3.055819 TCTGTCCGCAAGATCTTAAAGCT 60.056 43.478 7.86 0.00 43.02 3.74
506 509 3.002791 TGTCCGCAAGATCTTAAAGCTG 58.997 45.455 7.86 4.60 43.02 4.24
507 510 2.009774 TCCGCAAGATCTTAAAGCTGC 58.990 47.619 7.86 6.19 43.02 5.25
508 511 2.012673 CCGCAAGATCTTAAAGCTGCT 58.987 47.619 7.86 0.00 43.02 4.24
509 512 2.031437 CCGCAAGATCTTAAAGCTGCTC 59.969 50.000 7.86 0.00 43.02 4.26
510 513 2.285486 CGCAAGATCTTAAAGCTGCTCG 60.285 50.000 7.86 0.00 43.02 5.03
511 514 2.031437 GCAAGATCTTAAAGCTGCTCGG 59.969 50.000 7.86 0.00 0.00 4.63
512 515 2.611225 AGATCTTAAAGCTGCTCGGG 57.389 50.000 1.00 0.00 0.00 5.14
513 516 0.940833 GATCTTAAAGCTGCTCGGGC 59.059 55.000 0.00 0.00 39.26 6.13
514 517 0.811616 ATCTTAAAGCTGCTCGGGCG 60.812 55.000 1.14 0.00 42.25 6.13
515 518 2.435938 TTAAAGCTGCTCGGGCGG 60.436 61.111 13.15 13.15 46.87 6.13
521 524 2.734591 CTGCTCGGGCGGCTATAA 59.265 61.111 1.45 0.00 42.25 0.98
522 525 1.293498 CTGCTCGGGCGGCTATAAT 59.707 57.895 1.45 0.00 42.25 1.28
523 526 0.530744 CTGCTCGGGCGGCTATAATA 59.469 55.000 1.45 0.00 42.25 0.98
524 527 0.970640 TGCTCGGGCGGCTATAATAA 59.029 50.000 9.56 0.00 42.25 1.40
525 528 1.553248 TGCTCGGGCGGCTATAATAAT 59.447 47.619 9.56 0.00 42.25 1.28
526 529 2.202566 GCTCGGGCGGCTATAATAATC 58.797 52.381 9.56 0.00 0.00 1.75
527 530 2.822764 CTCGGGCGGCTATAATAATCC 58.177 52.381 9.56 0.00 0.00 3.01
528 531 2.167693 CTCGGGCGGCTATAATAATCCA 59.832 50.000 9.56 0.00 0.00 3.41
529 532 2.568062 TCGGGCGGCTATAATAATCCAA 59.432 45.455 9.56 0.00 0.00 3.53
530 533 3.008157 TCGGGCGGCTATAATAATCCAAA 59.992 43.478 9.56 0.00 0.00 3.28
531 534 3.945285 CGGGCGGCTATAATAATCCAAAT 59.055 43.478 9.56 0.00 0.00 2.32
532 535 4.035208 CGGGCGGCTATAATAATCCAAATC 59.965 45.833 9.56 0.00 0.00 2.17
533 536 4.338400 GGGCGGCTATAATAATCCAAATCC 59.662 45.833 9.56 0.00 0.00 3.01
534 537 4.035208 GGCGGCTATAATAATCCAAATCCG 59.965 45.833 0.00 0.00 36.56 4.18
535 538 4.035208 GCGGCTATAATAATCCAAATCCGG 59.965 45.833 0.00 0.00 34.34 5.14
536 539 4.035208 CGGCTATAATAATCCAAATCCGGC 59.965 45.833 0.00 0.00 0.00 6.13
537 540 4.947388 GGCTATAATAATCCAAATCCGGCA 59.053 41.667 0.00 0.00 0.00 5.69
538 541 5.594317 GGCTATAATAATCCAAATCCGGCAT 59.406 40.000 0.00 0.00 0.00 4.40
539 542 6.238759 GGCTATAATAATCCAAATCCGGCATC 60.239 42.308 0.00 0.00 0.00 3.91
540 543 6.543831 GCTATAATAATCCAAATCCGGCATCT 59.456 38.462 0.00 0.00 0.00 2.90
541 544 7.254932 GCTATAATAATCCAAATCCGGCATCTC 60.255 40.741 0.00 0.00 0.00 2.75
542 545 1.597742 AATCCAAATCCGGCATCTCG 58.402 50.000 0.00 0.00 0.00 4.04
543 546 0.758734 ATCCAAATCCGGCATCTCGA 59.241 50.000 0.00 0.00 0.00 4.04
544 547 0.758734 TCCAAATCCGGCATCTCGAT 59.241 50.000 0.00 0.00 0.00 3.59
545 548 1.967779 TCCAAATCCGGCATCTCGATA 59.032 47.619 0.00 0.00 0.00 2.92
546 549 2.567169 TCCAAATCCGGCATCTCGATAT 59.433 45.455 0.00 0.00 0.00 1.63
547 550 3.007940 TCCAAATCCGGCATCTCGATATT 59.992 43.478 0.00 0.00 0.00 1.28
548 551 4.221924 TCCAAATCCGGCATCTCGATATTA 59.778 41.667 0.00 0.00 0.00 0.98
549 552 4.568359 CCAAATCCGGCATCTCGATATTAG 59.432 45.833 0.00 0.00 0.00 1.73
550 553 5.410924 CAAATCCGGCATCTCGATATTAGA 58.589 41.667 0.00 0.00 0.00 2.10
551 554 5.661056 AATCCGGCATCTCGATATTAGAA 57.339 39.130 0.00 0.00 0.00 2.10
552 555 5.661056 ATCCGGCATCTCGATATTAGAAA 57.339 39.130 0.00 0.00 0.00 2.52
553 556 5.060662 TCCGGCATCTCGATATTAGAAAG 57.939 43.478 0.00 0.00 0.00 2.62
554 557 4.082190 TCCGGCATCTCGATATTAGAAAGG 60.082 45.833 0.00 0.00 0.00 3.11
555 558 3.614616 CGGCATCTCGATATTAGAAAGGC 59.385 47.826 0.00 0.00 0.00 4.35
556 559 4.619394 CGGCATCTCGATATTAGAAAGGCT 60.619 45.833 0.00 0.00 0.00 4.58
557 560 5.241662 GGCATCTCGATATTAGAAAGGCTT 58.758 41.667 0.00 0.00 0.00 4.35
558 561 5.703130 GGCATCTCGATATTAGAAAGGCTTT 59.297 40.000 13.25 13.25 0.00 3.51
559 562 6.348050 GGCATCTCGATATTAGAAAGGCTTTG 60.348 42.308 18.79 0.00 0.00 2.77
560 563 6.597614 CATCTCGATATTAGAAAGGCTTTGC 58.402 40.000 18.79 9.09 0.00 3.68
578 581 7.983307 GGCTTTGCCTATCTAAATCATATCTG 58.017 38.462 0.73 0.00 46.69 2.90
579 582 7.826252 GGCTTTGCCTATCTAAATCATATCTGA 59.174 37.037 0.73 0.00 46.69 3.27
580 583 8.881743 GCTTTGCCTATCTAAATCATATCTGAG 58.118 37.037 0.00 0.00 34.12 3.35
581 584 9.941325 CTTTGCCTATCTAAATCATATCTGAGT 57.059 33.333 0.00 0.00 34.12 3.41
585 588 9.474920 GCCTATCTAAATCATATCTGAGTATGC 57.525 37.037 0.00 0.00 34.12 3.14
586 589 9.979578 CCTATCTAAATCATATCTGAGTATGCC 57.020 37.037 0.00 0.00 34.12 4.40
590 593 8.481314 TCTAAATCATATCTGAGTATGCCATCC 58.519 37.037 0.00 0.00 34.12 3.51
591 594 6.887886 AATCATATCTGAGTATGCCATCCT 57.112 37.500 0.00 0.00 34.12 3.24
592 595 5.929058 TCATATCTGAGTATGCCATCCTC 57.071 43.478 0.00 0.00 33.15 3.71
593 596 5.336102 TCATATCTGAGTATGCCATCCTCA 58.664 41.667 0.00 0.00 33.15 3.86
594 597 5.962641 TCATATCTGAGTATGCCATCCTCAT 59.037 40.000 0.01 0.00 34.90 2.90
595 598 4.554960 ATCTGAGTATGCCATCCTCATG 57.445 45.455 0.01 0.00 34.90 3.07
606 609 3.623703 CCATCCTCATGGTCATCAAACA 58.376 45.455 0.00 0.00 44.46 2.83
737 740 0.395312 CCAAACCCACGGTGACTAGT 59.605 55.000 10.28 0.00 35.34 2.57
765 768 1.164041 CGTTTTTCTGACGGCCTGGT 61.164 55.000 0.00 0.00 36.90 4.00
771 774 2.933287 TGACGGCCTGGTCCCATT 60.933 61.111 0.00 0.00 36.07 3.16
1268 1272 4.225042 ACAGTGTTAGGGTTCATGCTGATA 59.775 41.667 0.00 0.00 0.00 2.15
1771 1832 3.074538 AGCAGAACTTTGGAAGGGTACAT 59.925 43.478 0.00 0.00 0.00 2.29
2008 2081 1.843368 CCATGTTGGAGGTGCAGATT 58.157 50.000 0.00 0.00 40.96 2.40
2285 2358 4.353788 AGGCCTTTATATAAGGATGTGGCA 59.646 41.667 0.00 0.00 39.81 4.92
2438 2521 7.950684 TGGATCTCCTATGCTATTAAGTAGTGT 59.049 37.037 0.00 0.00 36.82 3.55
2638 2785 2.863988 CCACCCCCACCCTTTCCT 60.864 66.667 0.00 0.00 0.00 3.36
2733 2881 1.681327 GGAGGCTGTGGAGGTACGA 60.681 63.158 0.00 0.00 0.00 3.43
3125 3374 9.862149 TGGATGTAATCTATGAGACTTGTAGTA 57.138 33.333 0.00 0.00 44.71 1.82
3137 3386 8.631480 TGAGACTTGTAGTAGTATTTGTGAGA 57.369 34.615 0.00 0.00 0.00 3.27
3138 3387 9.244292 TGAGACTTGTAGTAGTATTTGTGAGAT 57.756 33.333 0.00 0.00 0.00 2.75
3142 3391 9.998106 ACTTGTAGTAGTATTTGTGAGATTTGT 57.002 29.630 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.103263 CTGGAGTACCTCTATTGTGGCC 59.897 54.545 0.00 0.00 37.04 5.36
74 75 0.746063 TTTGCACTTGGTTGCTGGAG 59.254 50.000 0.00 0.00 43.41 3.86
120 121 8.158789 ACAGAATCATGGAAATGACCAATTTTT 58.841 29.630 0.00 0.00 43.47 1.94
121 122 7.682628 ACAGAATCATGGAAATGACCAATTTT 58.317 30.769 0.00 0.00 43.47 1.82
124 125 6.862469 AACAGAATCATGGAAATGACCAAT 57.138 33.333 0.00 0.00 43.47 3.16
130 131 6.927416 TCCTGAAAACAGAATCATGGAAATG 58.073 36.000 0.00 0.00 0.00 2.32
151 152 6.116126 GCAGGTATTTCACTCTACATTTCCT 58.884 40.000 0.00 0.00 0.00 3.36
226 229 0.449388 GCAGTTCAGGAATCTTGGCG 59.551 55.000 0.00 0.00 0.00 5.69
353 356 6.457355 TCAAATGAACATGATCCTTGGTTTG 58.543 36.000 0.00 4.51 0.00 2.93
355 358 6.669125 TTCAAATGAACATGATCCTTGGTT 57.331 33.333 0.00 0.00 0.00 3.67
366 369 5.302568 TGCAGAAGACCTTTCAAATGAACAT 59.697 36.000 0.00 0.00 33.13 2.71
394 397 2.161855 GTGATTGTGTTGCTGGATGGA 58.838 47.619 0.00 0.00 0.00 3.41
409 412 3.416156 GAGAGGAAGCTTGGTTGTGATT 58.584 45.455 2.10 0.00 0.00 2.57
417 420 0.622665 ATGTGGGAGAGGAAGCTTGG 59.377 55.000 2.10 0.00 0.00 3.61
418 421 2.490903 CAAATGTGGGAGAGGAAGCTTG 59.509 50.000 2.10 0.00 0.00 4.01
419 422 2.556114 CCAAATGTGGGAGAGGAAGCTT 60.556 50.000 0.00 0.00 41.77 3.74
420 423 1.005215 CCAAATGTGGGAGAGGAAGCT 59.995 52.381 0.00 0.00 41.77 3.74
421 424 1.004745 TCCAAATGTGGGAGAGGAAGC 59.995 52.381 0.86 0.00 46.01 3.86
422 425 3.439857 TTCCAAATGTGGGAGAGGAAG 57.560 47.619 0.86 0.00 46.01 3.46
423 426 4.402616 AATTCCAAATGTGGGAGAGGAA 57.597 40.909 0.86 0.00 46.01 3.36
424 427 4.402616 AAATTCCAAATGTGGGAGAGGA 57.597 40.909 0.86 0.00 46.01 3.71
425 428 5.240121 CAAAAATTCCAAATGTGGGAGAGG 58.760 41.667 0.86 0.00 46.01 3.69
426 429 5.240121 CCAAAAATTCCAAATGTGGGAGAG 58.760 41.667 0.86 0.00 46.01 3.20
427 430 4.504689 GCCAAAAATTCCAAATGTGGGAGA 60.505 41.667 0.86 0.00 46.01 3.71
428 431 3.752747 GCCAAAAATTCCAAATGTGGGAG 59.247 43.478 0.86 0.00 46.01 4.30
429 432 3.137176 TGCCAAAAATTCCAAATGTGGGA 59.863 39.130 0.86 0.00 46.01 4.37
430 433 3.252944 GTGCCAAAAATTCCAAATGTGGG 59.747 43.478 0.86 0.00 46.01 4.61
432 435 4.213906 GGAGTGCCAAAAATTCCAAATGTG 59.786 41.667 0.00 0.00 0.00 3.21
433 436 4.141528 TGGAGTGCCAAAAATTCCAAATGT 60.142 37.500 0.00 0.00 42.49 2.71
434 437 4.387598 TGGAGTGCCAAAAATTCCAAATG 58.612 39.130 0.00 0.00 42.49 2.32
435 438 4.703379 TGGAGTGCCAAAAATTCCAAAT 57.297 36.364 0.00 0.00 42.49 2.32
450 453 0.529378 GGCCTTGCAATCTTGGAGTG 59.471 55.000 0.00 0.00 0.00 3.51
451 454 0.112995 TGGCCTTGCAATCTTGGAGT 59.887 50.000 3.32 0.00 0.00 3.85
452 455 1.259609 TTGGCCTTGCAATCTTGGAG 58.740 50.000 3.32 0.00 0.00 3.86
453 456 1.941377 ATTGGCCTTGCAATCTTGGA 58.059 45.000 3.32 0.00 0.00 3.53
454 457 2.762327 AGTATTGGCCTTGCAATCTTGG 59.238 45.455 3.32 0.00 0.00 3.61
455 458 3.194116 ACAGTATTGGCCTTGCAATCTTG 59.806 43.478 3.32 0.41 0.00 3.02
456 459 3.434309 ACAGTATTGGCCTTGCAATCTT 58.566 40.909 3.32 0.00 0.00 2.40
457 460 3.019564 GACAGTATTGGCCTTGCAATCT 58.980 45.455 3.32 0.00 0.00 2.40
458 461 2.754552 TGACAGTATTGGCCTTGCAATC 59.245 45.455 3.32 0.00 0.00 2.67
459 462 2.806434 TGACAGTATTGGCCTTGCAAT 58.194 42.857 3.32 0.00 0.00 3.56
460 463 2.284754 TGACAGTATTGGCCTTGCAA 57.715 45.000 3.32 0.00 0.00 4.08
461 464 2.290832 TGATGACAGTATTGGCCTTGCA 60.291 45.455 3.32 0.00 0.00 4.08
462 465 2.368439 TGATGACAGTATTGGCCTTGC 58.632 47.619 3.32 0.00 0.00 4.01
463 466 4.275196 CAGATGATGACAGTATTGGCCTTG 59.725 45.833 3.32 0.00 0.00 3.61
464 467 4.080129 ACAGATGATGACAGTATTGGCCTT 60.080 41.667 3.32 0.00 0.00 4.35
465 468 3.457380 ACAGATGATGACAGTATTGGCCT 59.543 43.478 3.32 0.00 0.00 5.19
466 469 3.812053 GACAGATGATGACAGTATTGGCC 59.188 47.826 0.00 0.00 0.00 5.36
467 470 3.812053 GGACAGATGATGACAGTATTGGC 59.188 47.826 0.00 0.00 0.00 4.52
468 471 4.053983 CGGACAGATGATGACAGTATTGG 58.946 47.826 0.00 0.00 0.00 3.16
469 472 3.492383 GCGGACAGATGATGACAGTATTG 59.508 47.826 0.00 0.00 0.00 1.90
470 473 3.132824 TGCGGACAGATGATGACAGTATT 59.867 43.478 0.00 0.00 0.00 1.89
471 474 2.695147 TGCGGACAGATGATGACAGTAT 59.305 45.455 0.00 0.00 0.00 2.12
472 475 2.099405 TGCGGACAGATGATGACAGTA 58.901 47.619 0.00 0.00 0.00 2.74
473 476 0.897621 TGCGGACAGATGATGACAGT 59.102 50.000 0.00 0.00 0.00 3.55
474 477 1.931841 CTTGCGGACAGATGATGACAG 59.068 52.381 0.00 0.00 0.00 3.51
475 478 1.550072 TCTTGCGGACAGATGATGACA 59.450 47.619 0.00 0.00 0.00 3.58
476 479 2.299993 TCTTGCGGACAGATGATGAC 57.700 50.000 0.00 0.00 0.00 3.06
477 480 2.697229 AGATCTTGCGGACAGATGATGA 59.303 45.455 6.40 0.00 0.00 2.92
478 481 3.109044 AGATCTTGCGGACAGATGATG 57.891 47.619 6.40 0.00 0.00 3.07
479 482 3.834489 AAGATCTTGCGGACAGATGAT 57.166 42.857 7.30 0.00 0.00 2.45
480 483 4.736126 TTAAGATCTTGCGGACAGATGA 57.264 40.909 18.47 0.00 0.00 2.92
481 484 4.260538 GCTTTAAGATCTTGCGGACAGATG 60.261 45.833 18.47 0.00 0.00 2.90
482 485 3.873952 GCTTTAAGATCTTGCGGACAGAT 59.126 43.478 18.47 2.27 0.00 2.90
483 486 3.055819 AGCTTTAAGATCTTGCGGACAGA 60.056 43.478 18.47 0.00 0.00 3.41
484 487 3.063180 CAGCTTTAAGATCTTGCGGACAG 59.937 47.826 18.47 1.72 0.00 3.51
485 488 3.002791 CAGCTTTAAGATCTTGCGGACA 58.997 45.455 18.47 0.00 0.00 4.02
486 489 2.223135 GCAGCTTTAAGATCTTGCGGAC 60.223 50.000 18.47 6.64 0.00 4.79
487 490 2.009774 GCAGCTTTAAGATCTTGCGGA 58.990 47.619 18.47 0.00 0.00 5.54
488 491 2.012673 AGCAGCTTTAAGATCTTGCGG 58.987 47.619 18.47 13.97 0.00 5.69
489 492 2.285486 CGAGCAGCTTTAAGATCTTGCG 60.285 50.000 18.47 10.07 0.00 4.85
490 493 2.031437 CCGAGCAGCTTTAAGATCTTGC 59.969 50.000 18.47 12.74 0.00 4.01
491 494 2.611292 CCCGAGCAGCTTTAAGATCTTG 59.389 50.000 18.47 2.50 0.00 3.02
492 495 2.911484 CCCGAGCAGCTTTAAGATCTT 58.089 47.619 13.56 13.56 0.00 2.40
493 496 1.474143 GCCCGAGCAGCTTTAAGATCT 60.474 52.381 0.00 0.00 39.53 2.75
494 497 0.940833 GCCCGAGCAGCTTTAAGATC 59.059 55.000 0.00 0.00 39.53 2.75
495 498 0.811616 CGCCCGAGCAGCTTTAAGAT 60.812 55.000 0.00 0.00 39.83 2.40
496 499 1.447838 CGCCCGAGCAGCTTTAAGA 60.448 57.895 0.00 0.00 39.83 2.10
497 500 2.464459 CCGCCCGAGCAGCTTTAAG 61.464 63.158 0.00 0.00 39.83 1.85
498 501 2.435938 CCGCCCGAGCAGCTTTAA 60.436 61.111 0.00 0.00 39.83 1.52
503 506 2.788191 ATTATAGCCGCCCGAGCAGC 62.788 60.000 0.00 0.00 43.09 5.25
504 507 0.530744 TATTATAGCCGCCCGAGCAG 59.469 55.000 0.00 0.00 39.83 4.24
505 508 0.970640 TTATTATAGCCGCCCGAGCA 59.029 50.000 0.00 0.00 39.83 4.26
506 509 2.202566 GATTATTATAGCCGCCCGAGC 58.797 52.381 0.00 0.00 0.00 5.03
507 510 2.167693 TGGATTATTATAGCCGCCCGAG 59.832 50.000 0.00 0.00 0.00 4.63
508 511 2.181125 TGGATTATTATAGCCGCCCGA 58.819 47.619 0.00 0.00 0.00 5.14
509 512 2.684001 TGGATTATTATAGCCGCCCG 57.316 50.000 0.00 0.00 0.00 6.13
510 513 4.338400 GGATTTGGATTATTATAGCCGCCC 59.662 45.833 0.00 0.00 0.00 6.13
511 514 4.035208 CGGATTTGGATTATTATAGCCGCC 59.965 45.833 0.00 0.00 0.00 6.13
512 515 4.035208 CCGGATTTGGATTATTATAGCCGC 59.965 45.833 0.00 0.00 34.15 6.53
513 516 4.035208 GCCGGATTTGGATTATTATAGCCG 59.965 45.833 5.05 0.00 35.17 5.52
514 517 4.947388 TGCCGGATTTGGATTATTATAGCC 59.053 41.667 5.05 0.00 0.00 3.93
515 518 6.543831 AGATGCCGGATTTGGATTATTATAGC 59.456 38.462 5.05 0.00 0.00 2.97
516 519 7.042456 CGAGATGCCGGATTTGGATTATTATAG 60.042 40.741 5.05 0.00 0.00 1.31
517 520 6.761242 CGAGATGCCGGATTTGGATTATTATA 59.239 38.462 5.05 0.00 0.00 0.98
518 521 5.586243 CGAGATGCCGGATTTGGATTATTAT 59.414 40.000 5.05 0.00 0.00 1.28
519 522 4.935205 CGAGATGCCGGATTTGGATTATTA 59.065 41.667 5.05 0.00 0.00 0.98
520 523 3.753272 CGAGATGCCGGATTTGGATTATT 59.247 43.478 5.05 0.00 0.00 1.40
521 524 3.007940 TCGAGATGCCGGATTTGGATTAT 59.992 43.478 5.05 0.00 0.00 1.28
522 525 2.367241 TCGAGATGCCGGATTTGGATTA 59.633 45.455 5.05 0.00 0.00 1.75
523 526 1.140852 TCGAGATGCCGGATTTGGATT 59.859 47.619 5.05 0.00 0.00 3.01
524 527 0.758734 TCGAGATGCCGGATTTGGAT 59.241 50.000 5.05 0.00 0.00 3.41
525 528 0.758734 ATCGAGATGCCGGATTTGGA 59.241 50.000 5.05 0.00 0.00 3.53
526 529 2.455674 TATCGAGATGCCGGATTTGG 57.544 50.000 5.05 0.00 0.00 3.28
527 530 5.410924 TCTAATATCGAGATGCCGGATTTG 58.589 41.667 5.05 0.00 0.00 2.32
528 531 5.661056 TCTAATATCGAGATGCCGGATTT 57.339 39.130 5.05 0.00 0.00 2.17
529 532 5.661056 TTCTAATATCGAGATGCCGGATT 57.339 39.130 5.05 0.00 0.00 3.01
530 533 5.394663 CCTTTCTAATATCGAGATGCCGGAT 60.395 44.000 5.05 0.00 0.00 4.18
531 534 4.082190 CCTTTCTAATATCGAGATGCCGGA 60.082 45.833 5.05 0.00 0.00 5.14
532 535 4.177026 CCTTTCTAATATCGAGATGCCGG 58.823 47.826 0.00 0.00 0.00 6.13
533 536 3.614616 GCCTTTCTAATATCGAGATGCCG 59.385 47.826 0.00 0.00 0.00 5.69
534 537 4.826556 AGCCTTTCTAATATCGAGATGCC 58.173 43.478 0.00 0.00 0.00 4.40
535 538 6.597614 CAAAGCCTTTCTAATATCGAGATGC 58.402 40.000 0.00 0.00 0.00 3.91
536 539 6.348050 GGCAAAGCCTTTCTAATATCGAGATG 60.348 42.308 0.00 0.00 46.69 2.90
537 540 5.703130 GGCAAAGCCTTTCTAATATCGAGAT 59.297 40.000 0.00 0.00 46.69 2.75
538 541 5.057149 GGCAAAGCCTTTCTAATATCGAGA 58.943 41.667 0.00 0.00 46.69 4.04
539 542 5.349824 GGCAAAGCCTTTCTAATATCGAG 57.650 43.478 0.00 0.00 46.69 4.04
554 557 8.783833 TCAGATATGATTTAGATAGGCAAAGC 57.216 34.615 0.00 0.00 0.00 3.51
555 558 9.941325 ACTCAGATATGATTTAGATAGGCAAAG 57.059 33.333 0.00 0.00 0.00 2.77
559 562 9.474920 GCATACTCAGATATGATTTAGATAGGC 57.525 37.037 0.00 0.00 34.94 3.93
560 563 9.979578 GGCATACTCAGATATGATTTAGATAGG 57.020 37.037 0.00 0.00 34.94 2.57
564 567 8.481314 GGATGGCATACTCAGATATGATTTAGA 58.519 37.037 1.35 0.00 34.94 2.10
565 568 8.484575 AGGATGGCATACTCAGATATGATTTAG 58.515 37.037 6.34 0.00 34.94 1.85
566 569 8.384693 AGGATGGCATACTCAGATATGATTTA 57.615 34.615 6.34 0.00 34.94 1.40
567 570 7.037802 TGAGGATGGCATACTCAGATATGATTT 60.038 37.037 33.48 0.00 45.13 2.17
568 571 6.442885 TGAGGATGGCATACTCAGATATGATT 59.557 38.462 33.48 0.00 45.13 2.57
569 572 5.962641 TGAGGATGGCATACTCAGATATGAT 59.037 40.000 33.48 0.00 45.13 2.45
570 573 5.336102 TGAGGATGGCATACTCAGATATGA 58.664 41.667 33.48 13.24 45.13 2.15
571 574 5.672421 TGAGGATGGCATACTCAGATATG 57.328 43.478 33.48 0.00 45.13 1.78
586 589 3.379372 GGTGTTTGATGACCATGAGGATG 59.621 47.826 0.00 0.00 38.69 3.51
587 590 3.624777 GGTGTTTGATGACCATGAGGAT 58.375 45.455 0.00 0.00 38.69 3.24
588 591 2.615240 CGGTGTTTGATGACCATGAGGA 60.615 50.000 0.00 0.00 38.69 3.71
589 592 1.739466 CGGTGTTTGATGACCATGAGG 59.261 52.381 0.00 0.00 42.21 3.86
590 593 2.674852 CTCGGTGTTTGATGACCATGAG 59.325 50.000 0.00 0.00 31.97 2.90
591 594 2.038426 ACTCGGTGTTTGATGACCATGA 59.962 45.455 0.00 0.00 31.97 3.07
592 595 2.426522 ACTCGGTGTTTGATGACCATG 58.573 47.619 0.00 0.00 31.97 3.66
593 596 2.859165 ACTCGGTGTTTGATGACCAT 57.141 45.000 0.00 0.00 31.97 3.55
594 597 3.755112 TTACTCGGTGTTTGATGACCA 57.245 42.857 0.00 0.00 31.97 4.02
595 598 5.220605 GCTATTTACTCGGTGTTTGATGACC 60.221 44.000 0.00 0.00 0.00 4.02
596 599 5.350365 TGCTATTTACTCGGTGTTTGATGAC 59.650 40.000 0.00 0.00 0.00 3.06
597 600 5.483811 TGCTATTTACTCGGTGTTTGATGA 58.516 37.500 0.00 0.00 0.00 2.92
598 601 5.794687 TGCTATTTACTCGGTGTTTGATG 57.205 39.130 0.00 0.00 0.00 3.07
599 602 8.500753 TTTATGCTATTTACTCGGTGTTTGAT 57.499 30.769 0.00 0.00 0.00 2.57
600 603 7.413657 GCTTTATGCTATTTACTCGGTGTTTGA 60.414 37.037 0.00 0.00 38.95 2.69
601 604 6.687105 GCTTTATGCTATTTACTCGGTGTTTG 59.313 38.462 0.00 0.00 38.95 2.93
602 605 6.782150 GCTTTATGCTATTTACTCGGTGTTT 58.218 36.000 0.00 0.00 38.95 2.83
603 606 6.359480 GCTTTATGCTATTTACTCGGTGTT 57.641 37.500 0.00 0.00 38.95 3.32
604 607 5.986004 GCTTTATGCTATTTACTCGGTGT 57.014 39.130 0.00 0.00 38.95 4.16
765 768 1.303236 CGTGGGCTGACAAATGGGA 60.303 57.895 0.00 0.00 0.00 4.37
875 878 1.201181 AGTGAGCGAGTGTGTGATCTC 59.799 52.381 0.00 0.00 0.00 2.75
876 879 1.201181 GAGTGAGCGAGTGTGTGATCT 59.799 52.381 0.00 0.00 0.00 2.75
1268 1272 4.352009 TGCACTGTTCATTAAATCCCCAT 58.648 39.130 0.00 0.00 0.00 4.00
1771 1832 3.470709 CTGCTCAAACTTCTCCTTGTCA 58.529 45.455 0.00 0.00 0.00 3.58
2008 2081 5.477510 TCTTTTGCAAGTTTGAGCTTTTCA 58.522 33.333 0.00 0.00 0.00 2.69
2285 2358 7.290714 ACCCATAATTACTTGAAATCATGCCAT 59.709 33.333 0.00 0.00 0.00 4.40
2638 2785 2.646175 GCGGCTGGTGGAGTCACTA 61.646 63.158 0.00 0.00 43.17 2.74
2733 2881 2.517638 TGTGCTGCTGCTGCTGTT 60.518 55.556 27.67 0.00 39.81 3.16
3042 3232 7.987458 ACAAGTCTCTCTCAAATTGACTTACAA 59.013 33.333 0.00 0.00 43.43 2.41
3130 3379 9.990360 TCACAAATACTACTACAAATCTCACAA 57.010 29.630 0.00 0.00 0.00 3.33
3131 3380 9.639601 CTCACAAATACTACTACAAATCTCACA 57.360 33.333 0.00 0.00 0.00 3.58
3132 3381 9.856488 TCTCACAAATACTACTACAAATCTCAC 57.144 33.333 0.00 0.00 0.00 3.51
3133 3382 9.856488 GTCTCACAAATACTACTACAAATCTCA 57.144 33.333 0.00 0.00 0.00 3.27
3134 3383 9.856488 TGTCTCACAAATACTACTACAAATCTC 57.144 33.333 0.00 0.00 0.00 2.75
3135 3384 9.862371 CTGTCTCACAAATACTACTACAAATCT 57.138 33.333 0.00 0.00 0.00 2.40
3136 3385 9.856488 TCTGTCTCACAAATACTACTACAAATC 57.144 33.333 0.00 0.00 0.00 2.17
3138 3387 9.639601 CATCTGTCTCACAAATACTACTACAAA 57.360 33.333 0.00 0.00 0.00 2.83
3139 3388 9.020731 TCATCTGTCTCACAAATACTACTACAA 57.979 33.333 0.00 0.00 0.00 2.41
3140 3389 8.575649 TCATCTGTCTCACAAATACTACTACA 57.424 34.615 0.00 0.00 0.00 2.74
3143 3392 9.376075 CAATTCATCTGTCTCACAAATACTACT 57.624 33.333 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.