Multiple sequence alignment - TraesCS7B01G041100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G041100 chr7B 100.000 4295 0 0 1 4295 40652896 40657190 0.000000e+00 7932.0
1 TraesCS7B01G041100 chr7B 87.089 2037 177 38 1248 3261 40886432 40888405 0.000000e+00 2226.0
2 TraesCS7B01G041100 chr7B 92.068 996 67 5 3301 4295 40888405 40889389 0.000000e+00 1391.0
3 TraesCS7B01G041100 chr7B 88.525 244 19 3 1 236 703942392 703942634 1.950000e-73 287.0
4 TraesCS7B01G041100 chr7B 92.683 41 0 3 815 853 40880719 40880758 6.000000e-04 56.5
5 TraesCS7B01G041100 chr7B 96.970 33 0 1 524 555 40653308 40653340 2.000000e-03 54.7
6 TraesCS7B01G041100 chr7B 96.970 33 0 1 413 445 40653419 40653450 2.000000e-03 54.7
7 TraesCS7B01G041100 chr7A 94.638 1753 70 4 758 2491 91360683 91362430 0.000000e+00 2695.0
8 TraesCS7B01G041100 chr7A 88.112 1817 154 29 2527 4295 91362503 91364305 0.000000e+00 2102.0
9 TraesCS7B01G041100 chr7A 92.086 139 11 0 534 672 91360543 91360681 3.390000e-46 196.0
10 TraesCS7B01G041100 chr7A 90.323 93 7 2 668 759 669341171 669341080 2.100000e-23 121.0
11 TraesCS7B01G041100 chr7D 88.330 1671 155 19 850 2496 89829767 89831421 0.000000e+00 1969.0
12 TraesCS7B01G041100 chr7D 90.041 1446 117 20 2872 4295 89862703 89864143 0.000000e+00 1847.0
13 TraesCS7B01G041100 chr7D 95.438 811 30 2 2537 3340 89831562 89832372 0.000000e+00 1286.0
14 TraesCS7B01G041100 chr7D 91.652 551 42 4 3336 3882 89858991 89859541 0.000000e+00 760.0
15 TraesCS7B01G041100 chr7D 91.045 268 22 2 4029 4295 89859880 89860146 1.140000e-95 361.0
16 TraesCS7B01G041100 chr7D 89.754 244 17 2 1 236 263526017 263525774 5.400000e-79 305.0
17 TraesCS7B01G041100 chr7D 77.015 335 48 11 3370 3702 613889702 613890009 9.550000e-37 165.0
18 TraesCS7B01G041100 chr7D 91.111 90 7 1 670 759 382748272 382748184 2.100000e-23 121.0
19 TraesCS7B01G041100 chr7D 96.296 54 2 0 500 553 89829377 89829430 5.920000e-14 89.8
20 TraesCS7B01G041100 chr7D 100.000 29 0 0 413 441 89829401 89829429 2.000000e-03 54.7
21 TraesCS7B01G041100 chr3B 88.959 634 67 1 2543 3176 729921550 729920920 0.000000e+00 780.0
22 TraesCS7B01G041100 chr3B 87.942 622 72 1 2543 3164 729804636 729805254 0.000000e+00 730.0
23 TraesCS7B01G041100 chr3B 84.601 539 68 12 1952 2481 729922194 729921662 4.920000e-144 521.0
24 TraesCS7B01G041100 chr3B 83.955 536 74 9 1952 2481 729907675 729907146 1.780000e-138 503.0
25 TraesCS7B01G041100 chr3B 82.495 537 79 8 1949 2482 729803990 729804514 1.410000e-124 457.0
26 TraesCS7B01G041100 chr3B 77.093 681 136 15 1152 1822 729922990 729922320 4.050000e-100 375.0
27 TraesCS7B01G041100 chr3B 76.879 692 126 23 1152 1822 729908472 729907794 1.140000e-95 361.0
28 TraesCS7B01G041100 chr3B 91.667 48 2 2 556 602 822194594 822194640 9.970000e-07 65.8
29 TraesCS7B01G041100 chr3D 88.907 622 66 1 2543 3164 550382441 550381823 0.000000e+00 763.0
30 TraesCS7B01G041100 chr3D 84.758 538 69 10 1952 2481 550383076 550382544 1.060000e-145 527.0
31 TraesCS7B01G041100 chr3D 77.761 652 125 15 1181 1822 550383894 550383253 2.420000e-102 383.0
32 TraesCS7B01G041100 chr3D 91.667 48 2 2 556 602 610351460 610351506 9.970000e-07 65.8
33 TraesCS7B01G041100 chr3A 86.334 622 82 1 2543 3164 687205729 687206347 0.000000e+00 675.0
34 TraesCS7B01G041100 chr3A 82.714 538 75 10 1950 2482 687205014 687205538 3.030000e-126 462.0
35 TraesCS7B01G041100 chr3A 80.036 551 83 15 1949 2487 687130790 687131325 2.420000e-102 383.0
36 TraesCS7B01G041100 chr3A 80.508 472 64 18 1046 1502 687126795 687127253 1.910000e-88 337.0
37 TraesCS7B01G041100 chr3A 87.571 177 13 2 68 236 503853785 503853610 3.390000e-46 196.0
38 TraesCS7B01G041100 chr3A 91.667 48 2 2 556 602 744439143 744439189 9.970000e-07 65.8
39 TraesCS7B01G041100 chr4A 77.803 874 127 38 3459 4289 583237763 583238612 1.080000e-130 477.0
40 TraesCS7B01G041100 chr4A 74.458 830 166 25 3492 4283 574873925 574874746 2.490000e-82 316.0
41 TraesCS7B01G041100 chr4A 88.500 200 18 3 7 203 615043988 615044185 2.000000e-58 237.0
42 TraesCS7B01G041100 chr5D 78.467 548 106 11 2544 3082 59043821 59043277 8.840000e-92 348.0
43 TraesCS7B01G041100 chr5D 91.209 91 7 1 670 760 538765532 538765621 5.830000e-24 122.0
44 TraesCS7B01G041100 chr5D 91.954 87 6 1 673 759 428519808 428519723 2.100000e-23 121.0
45 TraesCS7B01G041100 chr5D 82.927 82 13 1 558 639 464502204 464502284 5.960000e-09 73.1
46 TraesCS7B01G041100 chr5D 100.000 28 0 0 558 585 487843227 487843200 8.000000e-03 52.8
47 TraesCS7B01G041100 chr5B 78.403 551 101 15 2544 3082 72098827 72099371 4.110000e-90 342.0
48 TraesCS7B01G041100 chrUn 89.300 243 19 2 1 236 48620397 48620639 9.030000e-77 298.0
49 TraesCS7B01G041100 chr2B 88.115 244 19 4 1 236 66760838 66760597 9.090000e-72 281.0
50 TraesCS7B01G041100 chr2B 88.344 163 12 2 81 236 236453278 236453440 5.670000e-44 189.0
51 TraesCS7B01G041100 chr1D 85.771 253 18 7 1 236 4669750 4670001 7.130000e-63 252.0
52 TraesCS7B01G041100 chr6A 84.016 244 31 2 1 236 123261167 123261410 1.200000e-55 228.0
53 TraesCS7B01G041100 chr6A 93.023 86 5 1 674 759 549230443 549230359 1.620000e-24 124.0
54 TraesCS7B01G041100 chr2A 87.006 177 15 2 68 236 391842636 391842812 4.380000e-45 193.0
55 TraesCS7B01G041100 chr2A 91.406 128 9 1 1 128 43243221 43243096 1.590000e-39 174.0
56 TraesCS7B01G041100 chr6D 89.362 94 9 1 667 760 33963731 33963639 2.710000e-22 117.0
57 TraesCS7B01G041100 chr6D 89.362 94 7 3 667 759 410110907 410110816 9.760000e-22 115.0
58 TraesCS7B01G041100 chr5A 89.362 94 9 1 667 760 119843804 119843896 2.710000e-22 117.0
59 TraesCS7B01G041100 chr5A 87.671 73 9 0 244 316 355173070 355173142 7.650000e-13 86.1
60 TraesCS7B01G041100 chr1B 90.110 91 8 1 670 760 165763587 165763498 2.710000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G041100 chr7B 40652896 40657190 4294 False 2680.466667 7932 97.980000 1 4295 3 chr7B.!!$F3 4294
1 TraesCS7B01G041100 chr7B 40886432 40889389 2957 False 1808.500000 2226 89.578500 1248 4295 2 chr7B.!!$F4 3047
2 TraesCS7B01G041100 chr7A 91360543 91364305 3762 False 1664.333333 2695 91.612000 534 4295 3 chr7A.!!$F1 3761
3 TraesCS7B01G041100 chr7D 89858991 89864143 5152 False 989.333333 1847 90.912667 2872 4295 3 chr7D.!!$F3 1423
4 TraesCS7B01G041100 chr7D 89829377 89832372 2995 False 849.875000 1969 95.016000 413 3340 4 chr7D.!!$F2 2927
5 TraesCS7B01G041100 chr3B 729803990 729805254 1264 False 593.500000 730 85.218500 1949 3164 2 chr3B.!!$F2 1215
6 TraesCS7B01G041100 chr3B 729920920 729922990 2070 True 558.666667 780 83.551000 1152 3176 3 chr3B.!!$R2 2024
7 TraesCS7B01G041100 chr3B 729907146 729908472 1326 True 432.000000 503 80.417000 1152 2481 2 chr3B.!!$R1 1329
8 TraesCS7B01G041100 chr3D 550381823 550383894 2071 True 557.666667 763 83.808667 1181 3164 3 chr3D.!!$R1 1983
9 TraesCS7B01G041100 chr3A 687205014 687206347 1333 False 568.500000 675 84.524000 1950 3164 2 chr3A.!!$F3 1214
10 TraesCS7B01G041100 chr3A 687126795 687131325 4530 False 360.000000 383 80.272000 1046 2487 2 chr3A.!!$F2 1441
11 TraesCS7B01G041100 chr4A 583237763 583238612 849 False 477.000000 477 77.803000 3459 4289 1 chr4A.!!$F2 830
12 TraesCS7B01G041100 chr4A 574873925 574874746 821 False 316.000000 316 74.458000 3492 4283 1 chr4A.!!$F1 791
13 TraesCS7B01G041100 chr5D 59043277 59043821 544 True 348.000000 348 78.467000 2544 3082 1 chr5D.!!$R1 538
14 TraesCS7B01G041100 chr5B 72098827 72099371 544 False 342.000000 342 78.403000 2544 3082 1 chr5B.!!$F1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.034059 GGTAGGATCGGTGCTCCATG 59.966 60.0 5.52 0.00 35.08 3.66 F
23 24 0.034059 GTAGGATCGGTGCTCCATGG 59.966 60.0 4.97 4.97 35.08 3.66 F
104 105 0.036164 TGTCCGGTGGTTTCTCATGG 59.964 55.0 0.00 0.00 0.00 3.66 F
162 163 0.036732 TCTTGATGGAGTGTGGGCAC 59.963 55.0 0.00 0.00 45.57 5.01 F
1563 1761 0.036164 CGGTCCCCATGAACAAGACA 59.964 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1761 1.380302 GGTCACCAGCTCCCACATT 59.620 57.895 0.00 0.00 0.00 2.71 R
1710 2876 3.118408 TGTTAAGACAGTTGGTGCACTCT 60.118 43.478 17.98 7.54 0.00 3.24 R
2530 5936 0.035820 TGCCTGAACCATAACCGACC 60.036 55.000 0.00 0.00 0.00 4.79 R
2531 5937 2.038387 ATGCCTGAACCATAACCGAC 57.962 50.000 0.00 0.00 0.00 4.79 R
3849 9335 0.399454 AATCTCATCCCGGCATGAGG 59.601 55.000 30.68 15.21 46.88 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.221222 GCAGGTAGGATCGGTGCT 58.779 61.111 0.00 0.00 0.00 4.40
18 19 1.068250 GCAGGTAGGATCGGTGCTC 59.932 63.158 0.00 0.00 0.00 4.26
21 22 0.105453 AGGTAGGATCGGTGCTCCAT 60.105 55.000 5.52 0.00 35.08 3.41
22 23 0.034059 GGTAGGATCGGTGCTCCATG 59.966 60.000 5.52 0.00 35.08 3.66
23 24 0.034059 GTAGGATCGGTGCTCCATGG 59.966 60.000 4.97 4.97 35.08 3.66
33 34 3.147595 CTCCATGGTCCGGAGCGA 61.148 66.667 27.33 17.66 43.50 4.93
34 35 3.144120 CTCCATGGTCCGGAGCGAG 62.144 68.421 27.33 22.43 43.50 5.03
36 37 2.415010 CATGGTCCGGAGCGAGAG 59.585 66.667 27.33 13.62 0.00 3.20
37 38 2.835431 ATGGTCCGGAGCGAGAGG 60.835 66.667 27.33 0.00 0.00 3.69
59 60 4.344865 GGGTGCCCTTTCCAGCGA 62.345 66.667 0.00 0.00 0.00 4.93
60 61 3.056328 GGTGCCCTTTCCAGCGAC 61.056 66.667 0.00 0.00 0.00 5.19
61 62 2.281484 GTGCCCTTTCCAGCGACA 60.281 61.111 0.00 0.00 0.00 4.35
62 63 1.896660 GTGCCCTTTCCAGCGACAA 60.897 57.895 0.00 0.00 0.00 3.18
64 65 1.600916 GCCCTTTCCAGCGACAACT 60.601 57.895 0.00 0.00 0.00 3.16
65 66 1.172812 GCCCTTTCCAGCGACAACTT 61.173 55.000 0.00 0.00 0.00 2.66
67 68 0.593128 CCTTTCCAGCGACAACTTGG 59.407 55.000 0.00 0.00 0.00 3.61
69 70 1.002468 CTTTCCAGCGACAACTTGGTG 60.002 52.381 0.00 0.00 33.65 4.17
70 71 0.107410 TTCCAGCGACAACTTGGTGT 60.107 50.000 0.00 0.00 33.65 4.16
71 72 0.753867 TCCAGCGACAACTTGGTGTA 59.246 50.000 0.00 0.00 33.65 2.90
72 73 1.346395 TCCAGCGACAACTTGGTGTAT 59.654 47.619 0.00 0.00 33.65 2.29
73 74 1.464608 CCAGCGACAACTTGGTGTATG 59.535 52.381 0.00 0.00 31.88 2.39
74 75 2.143122 CAGCGACAACTTGGTGTATGT 58.857 47.619 0.00 0.00 0.00 2.29
75 76 2.096268 CAGCGACAACTTGGTGTATGTG 60.096 50.000 0.00 0.00 0.00 3.21
76 77 1.871039 GCGACAACTTGGTGTATGTGT 59.129 47.619 0.00 0.00 0.00 3.72
77 78 2.289547 GCGACAACTTGGTGTATGTGTT 59.710 45.455 0.00 0.00 0.00 3.32
78 79 3.848191 GCGACAACTTGGTGTATGTGTTG 60.848 47.826 0.00 0.00 42.31 3.33
79 80 3.628017 GACAACTTGGTGTATGTGTTGC 58.372 45.455 0.00 0.00 40.88 4.17
82 83 4.229096 CAACTTGGTGTATGTGTTGCATC 58.771 43.478 0.00 0.00 38.94 3.91
84 85 2.464157 TGGTGTATGTGTTGCATCGA 57.536 45.000 0.00 0.00 38.94 3.59
85 86 2.984562 TGGTGTATGTGTTGCATCGAT 58.015 42.857 0.00 0.00 38.94 3.59
86 87 2.677337 TGGTGTATGTGTTGCATCGATG 59.323 45.455 21.27 21.27 38.94 3.84
87 88 2.677836 GGTGTATGTGTTGCATCGATGT 59.322 45.455 25.47 7.42 38.94 3.06
88 89 3.242413 GGTGTATGTGTTGCATCGATGTC 60.242 47.826 25.47 17.83 38.94 3.06
89 90 2.935849 TGTATGTGTTGCATCGATGTCC 59.064 45.455 25.47 14.18 38.94 4.02
90 91 1.009078 ATGTGTTGCATCGATGTCCG 58.991 50.000 25.47 1.47 40.25 4.79
96 97 4.932789 CATCGATGTCCGGTGGTT 57.067 55.556 17.50 0.00 45.21 3.67
97 98 3.153024 CATCGATGTCCGGTGGTTT 57.847 52.632 17.50 0.00 45.21 3.27
98 99 1.006832 CATCGATGTCCGGTGGTTTC 58.993 55.000 17.50 0.00 45.21 2.78
102 103 1.405526 CGATGTCCGGTGGTTTCTCAT 60.406 52.381 0.00 0.00 33.91 2.90
103 104 2.009774 GATGTCCGGTGGTTTCTCATG 58.990 52.381 0.00 0.00 0.00 3.07
104 105 0.036164 TGTCCGGTGGTTTCTCATGG 59.964 55.000 0.00 0.00 0.00 3.66
105 106 0.323629 GTCCGGTGGTTTCTCATGGA 59.676 55.000 0.00 0.00 0.00 3.41
108 109 1.026718 CGGTGGTTTCTCATGGAGGC 61.027 60.000 0.00 0.00 0.00 4.70
109 110 0.038166 GGTGGTTTCTCATGGAGGCA 59.962 55.000 0.00 0.00 0.00 4.75
110 111 1.168714 GTGGTTTCTCATGGAGGCAC 58.831 55.000 0.00 0.00 0.00 5.01
111 112 0.321564 TGGTTTCTCATGGAGGCACG 60.322 55.000 0.00 0.00 0.00 5.34
113 114 0.321653 GTTTCTCATGGAGGCACGGT 60.322 55.000 0.00 0.00 0.00 4.83
114 115 0.036388 TTTCTCATGGAGGCACGGTC 60.036 55.000 0.00 0.00 0.00 4.79
116 117 1.142748 CTCATGGAGGCACGGTCTC 59.857 63.158 0.00 0.00 32.92 3.36
117 118 1.305297 TCATGGAGGCACGGTCTCT 60.305 57.895 5.66 0.00 34.33 3.10
118 119 1.142748 CATGGAGGCACGGTCTCTC 59.857 63.158 5.66 0.00 34.33 3.20
119 120 1.000993 ATGGAGGCACGGTCTCTCT 59.999 57.895 5.66 0.00 34.33 3.10
120 121 0.616111 ATGGAGGCACGGTCTCTCTT 60.616 55.000 5.66 0.00 34.33 2.85
121 122 1.251527 TGGAGGCACGGTCTCTCTTC 61.252 60.000 5.66 0.00 34.33 2.87
122 123 0.968393 GGAGGCACGGTCTCTCTTCT 60.968 60.000 5.66 0.00 34.33 2.85
123 124 1.682394 GGAGGCACGGTCTCTCTTCTA 60.682 57.143 5.66 0.00 34.33 2.10
124 125 1.673920 GAGGCACGGTCTCTCTTCTAG 59.326 57.143 0.00 0.00 30.76 2.43
127 128 3.015327 GGCACGGTCTCTCTTCTAGTTA 58.985 50.000 0.00 0.00 0.00 2.24
128 129 3.181498 GGCACGGTCTCTCTTCTAGTTAC 60.181 52.174 0.00 0.00 0.00 2.50
129 130 3.690628 GCACGGTCTCTCTTCTAGTTACT 59.309 47.826 0.00 0.00 0.00 2.24
130 131 4.874966 GCACGGTCTCTCTTCTAGTTACTA 59.125 45.833 0.00 0.00 0.00 1.82
131 132 5.006941 GCACGGTCTCTCTTCTAGTTACTAG 59.993 48.000 12.85 12.85 35.57 2.57
132 133 5.006941 CACGGTCTCTCTTCTAGTTACTAGC 59.993 48.000 14.11 0.00 34.36 3.42
133 134 4.512571 CGGTCTCTCTTCTAGTTACTAGCC 59.487 50.000 14.11 6.47 34.36 3.93
134 135 5.685599 CGGTCTCTCTTCTAGTTACTAGCCT 60.686 48.000 14.11 0.00 34.36 4.58
135 136 5.761726 GGTCTCTCTTCTAGTTACTAGCCTC 59.238 48.000 14.11 0.34 34.36 4.70
136 137 5.464389 GTCTCTCTTCTAGTTACTAGCCTCG 59.536 48.000 14.11 3.96 34.36 4.63
139 140 3.201708 TCTTCTAGTTACTAGCCTCGGGT 59.798 47.826 14.11 0.00 34.36 5.28
140 141 2.928334 TCTAGTTACTAGCCTCGGGTG 58.072 52.381 14.11 0.00 34.36 4.61
142 143 1.183549 AGTTACTAGCCTCGGGTGTG 58.816 55.000 0.00 0.00 0.00 3.82
143 144 0.893447 GTTACTAGCCTCGGGTGTGT 59.107 55.000 0.00 0.07 0.00 3.72
145 146 0.330604 TACTAGCCTCGGGTGTGTCT 59.669 55.000 0.00 0.00 0.00 3.41
146 147 0.542232 ACTAGCCTCGGGTGTGTCTT 60.542 55.000 0.00 0.00 0.00 3.01
147 148 0.108615 CTAGCCTCGGGTGTGTCTTG 60.109 60.000 0.00 0.00 0.00 3.02
148 149 0.541063 TAGCCTCGGGTGTGTCTTGA 60.541 55.000 0.00 0.00 0.00 3.02
149 150 1.194781 AGCCTCGGGTGTGTCTTGAT 61.195 55.000 0.00 0.00 0.00 2.57
150 151 1.021390 GCCTCGGGTGTGTCTTGATG 61.021 60.000 0.00 0.00 0.00 3.07
151 152 0.391661 CCTCGGGTGTGTCTTGATGG 60.392 60.000 0.00 0.00 0.00 3.51
153 154 0.608130 TCGGGTGTGTCTTGATGGAG 59.392 55.000 0.00 0.00 0.00 3.86
154 155 0.321671 CGGGTGTGTCTTGATGGAGT 59.678 55.000 0.00 0.00 0.00 3.85
155 156 1.813513 GGGTGTGTCTTGATGGAGTG 58.186 55.000 0.00 0.00 0.00 3.51
156 157 1.072331 GGGTGTGTCTTGATGGAGTGT 59.928 52.381 0.00 0.00 0.00 3.55
157 158 2.146342 GGTGTGTCTTGATGGAGTGTG 58.854 52.381 0.00 0.00 0.00 3.82
158 159 2.146342 GTGTGTCTTGATGGAGTGTGG 58.854 52.381 0.00 0.00 0.00 4.17
159 160 1.072173 TGTGTCTTGATGGAGTGTGGG 59.928 52.381 0.00 0.00 0.00 4.61
160 161 0.036732 TGTCTTGATGGAGTGTGGGC 59.963 55.000 0.00 0.00 0.00 5.36
162 163 0.036732 TCTTGATGGAGTGTGGGCAC 59.963 55.000 0.00 0.00 45.57 5.01
173 174 3.059352 GTGTGGGCACTCTTGTAATCT 57.941 47.619 0.00 0.00 42.13 2.40
174 175 3.412386 GTGTGGGCACTCTTGTAATCTT 58.588 45.455 0.00 0.00 42.13 2.40
176 177 3.181445 TGTGGGCACTCTTGTAATCTTGT 60.181 43.478 0.00 0.00 0.00 3.16
178 179 4.278419 GTGGGCACTCTTGTAATCTTGTTT 59.722 41.667 0.00 0.00 0.00 2.83
179 180 4.892934 TGGGCACTCTTGTAATCTTGTTTT 59.107 37.500 0.00 0.00 0.00 2.43
180 181 6.016610 GTGGGCACTCTTGTAATCTTGTTTTA 60.017 38.462 0.00 0.00 0.00 1.52
181 182 6.719370 TGGGCACTCTTGTAATCTTGTTTTAT 59.281 34.615 0.00 0.00 0.00 1.40
184 185 8.515414 GGCACTCTTGTAATCTTGTTTTATCTT 58.485 33.333 0.00 0.00 0.00 2.40
185 186 9.899226 GCACTCTTGTAATCTTGTTTTATCTTT 57.101 29.630 0.00 0.00 0.00 2.52
200 201 9.665719 TGTTTTATCTTTGATCTGCTATGTACA 57.334 29.630 0.00 0.00 0.00 2.90
201 202 9.922305 GTTTTATCTTTGATCTGCTATGTACAC 57.078 33.333 0.00 0.00 0.00 2.90
202 203 9.890629 TTTTATCTTTGATCTGCTATGTACACT 57.109 29.630 0.00 0.00 0.00 3.55
203 204 9.534565 TTTATCTTTGATCTGCTATGTACACTC 57.465 33.333 0.00 0.00 0.00 3.51
204 205 6.530019 TCTTTGATCTGCTATGTACACTCA 57.470 37.500 0.00 0.00 0.00 3.41
205 206 7.117285 TCTTTGATCTGCTATGTACACTCAT 57.883 36.000 0.00 0.00 0.00 2.90
206 207 7.205992 TCTTTGATCTGCTATGTACACTCATC 58.794 38.462 0.00 0.00 0.00 2.92
207 208 6.469782 TTGATCTGCTATGTACACTCATCA 57.530 37.500 0.00 0.00 0.00 3.07
208 209 5.836347 TGATCTGCTATGTACACTCATCAC 58.164 41.667 0.00 0.00 0.00 3.06
209 210 5.595952 TGATCTGCTATGTACACTCATCACT 59.404 40.000 0.00 0.00 0.00 3.41
210 211 5.921962 TCTGCTATGTACACTCATCACTT 57.078 39.130 0.00 0.00 0.00 3.16
211 212 6.286240 TCTGCTATGTACACTCATCACTTT 57.714 37.500 0.00 0.00 0.00 2.66
212 213 6.101997 TCTGCTATGTACACTCATCACTTTG 58.898 40.000 0.00 0.00 0.00 2.77
213 214 5.793817 TGCTATGTACACTCATCACTTTGT 58.206 37.500 0.00 0.00 0.00 2.83
214 215 6.930731 TGCTATGTACACTCATCACTTTGTA 58.069 36.000 0.00 0.00 0.00 2.41
215 216 7.555965 TGCTATGTACACTCATCACTTTGTAT 58.444 34.615 0.00 0.00 0.00 2.29
216 217 7.706607 TGCTATGTACACTCATCACTTTGTATC 59.293 37.037 0.00 0.00 0.00 2.24
217 218 7.096436 GCTATGTACACTCATCACTTTGTATCG 60.096 40.741 0.00 0.00 0.00 2.92
218 219 5.407502 TGTACACTCATCACTTTGTATCGG 58.592 41.667 0.00 0.00 0.00 4.18
219 220 4.537135 ACACTCATCACTTTGTATCGGT 57.463 40.909 0.00 0.00 0.00 4.69
221 222 4.929808 ACACTCATCACTTTGTATCGGTTC 59.070 41.667 0.00 0.00 0.00 3.62
223 224 3.517602 TCATCACTTTGTATCGGTTCGG 58.482 45.455 0.00 0.00 0.00 4.30
224 225 1.717194 TCACTTTGTATCGGTTCGGC 58.283 50.000 0.00 0.00 0.00 5.54
225 226 0.725117 CACTTTGTATCGGTTCGGCC 59.275 55.000 0.00 0.00 0.00 6.13
234 235 3.284449 GGTTCGGCCGTGTTGCTT 61.284 61.111 27.15 0.00 0.00 3.91
235 236 2.719354 GTTCGGCCGTGTTGCTTT 59.281 55.556 27.15 0.00 0.00 3.51
236 237 1.065109 GTTCGGCCGTGTTGCTTTT 59.935 52.632 27.15 0.00 0.00 2.27
237 238 0.526739 GTTCGGCCGTGTTGCTTTTT 60.527 50.000 27.15 0.00 0.00 1.94
238 239 0.248702 TTCGGCCGTGTTGCTTTTTC 60.249 50.000 27.15 0.00 0.00 2.29
239 240 2.008697 CGGCCGTGTTGCTTTTTCG 61.009 57.895 19.50 0.00 0.00 3.46
240 241 1.660264 GGCCGTGTTGCTTTTTCGG 60.660 57.895 0.00 0.00 43.37 4.30
241 242 1.065109 GCCGTGTTGCTTTTTCGGT 59.935 52.632 0.00 0.00 42.62 4.69
242 243 0.308376 GCCGTGTTGCTTTTTCGGTA 59.692 50.000 0.00 0.00 42.62 4.02
245 246 3.634283 CCGTGTTGCTTTTTCGGTAATT 58.366 40.909 0.00 0.00 36.99 1.40
246 247 4.785417 CCGTGTTGCTTTTTCGGTAATTA 58.215 39.130 0.00 0.00 36.99 1.40
247 248 4.613866 CCGTGTTGCTTTTTCGGTAATTAC 59.386 41.667 7.09 7.09 36.99 1.89
248 249 5.445845 CGTGTTGCTTTTTCGGTAATTACT 58.554 37.500 15.05 0.00 0.00 2.24
249 250 5.910723 CGTGTTGCTTTTTCGGTAATTACTT 59.089 36.000 15.05 0.00 0.00 2.24
251 252 6.693978 GTGTTGCTTTTTCGGTAATTACTTGT 59.306 34.615 15.05 0.00 0.00 3.16
252 253 6.913673 TGTTGCTTTTTCGGTAATTACTTGTC 59.086 34.615 15.05 0.00 0.00 3.18
253 254 6.621316 TGCTTTTTCGGTAATTACTTGTCA 57.379 33.333 15.05 1.48 0.00 3.58
254 255 6.432107 TGCTTTTTCGGTAATTACTTGTCAC 58.568 36.000 15.05 0.00 0.00 3.67
255 256 6.261381 TGCTTTTTCGGTAATTACTTGTCACT 59.739 34.615 15.05 0.00 0.00 3.41
256 257 6.795593 GCTTTTTCGGTAATTACTTGTCACTC 59.204 38.462 15.05 0.00 0.00 3.51
258 259 7.789273 TTTTCGGTAATTACTTGTCACTCAA 57.211 32.000 15.05 0.00 34.61 3.02
259 260 7.789273 TTTCGGTAATTACTTGTCACTCAAA 57.211 32.000 15.05 2.37 35.48 2.69
260 261 6.774354 TCGGTAATTACTTGTCACTCAAAC 57.226 37.500 15.05 0.00 35.48 2.93
261 262 5.403166 TCGGTAATTACTTGTCACTCAAACG 59.597 40.000 15.05 5.79 35.48 3.60
262 263 5.389098 CGGTAATTACTTGTCACTCAAACGG 60.389 44.000 15.05 0.00 35.48 4.44
263 264 4.483476 AATTACTTGTCACTCAAACGGC 57.517 40.909 0.00 0.00 35.48 5.68
264 265 2.902705 TACTTGTCACTCAAACGGCT 57.097 45.000 0.00 0.00 35.48 5.52
265 266 1.299541 ACTTGTCACTCAAACGGCTG 58.700 50.000 0.00 0.00 35.48 4.85
267 268 2.159014 ACTTGTCACTCAAACGGCTGTA 60.159 45.455 0.00 0.00 35.48 2.74
269 270 2.683968 TGTCACTCAAACGGCTGTATC 58.316 47.619 0.00 0.00 0.00 2.24
270 271 2.299013 TGTCACTCAAACGGCTGTATCT 59.701 45.455 0.00 0.00 0.00 1.98
271 272 3.508402 TGTCACTCAAACGGCTGTATCTA 59.492 43.478 0.00 0.00 0.00 1.98
272 273 4.106197 GTCACTCAAACGGCTGTATCTAG 58.894 47.826 0.00 0.00 0.00 2.43
273 274 2.860735 CACTCAAACGGCTGTATCTAGC 59.139 50.000 0.00 0.00 42.94 3.42
274 275 2.496070 ACTCAAACGGCTGTATCTAGCA 59.504 45.455 0.00 0.00 45.46 3.49
277 278 3.697542 TCAAACGGCTGTATCTAGCACTA 59.302 43.478 0.00 0.00 45.46 2.74
278 279 4.158949 TCAAACGGCTGTATCTAGCACTAA 59.841 41.667 0.00 0.00 45.46 2.24
281 282 5.277857 ACGGCTGTATCTAGCACTAAAAT 57.722 39.130 0.00 0.00 45.46 1.82
283 284 6.994221 ACGGCTGTATCTAGCACTAAAATAT 58.006 36.000 0.00 0.00 45.46 1.28
284 285 6.868864 ACGGCTGTATCTAGCACTAAAATATG 59.131 38.462 0.00 0.00 45.46 1.78
286 287 7.385205 CGGCTGTATCTAGCACTAAAATATGTT 59.615 37.037 0.00 0.00 45.46 2.71
318 319 8.184192 ACATCAATTTCATCGACAACTAATTCC 58.816 33.333 0.00 0.00 0.00 3.01
320 321 9.613428 ATCAATTTCATCGACAACTAATTCCTA 57.387 29.630 0.00 0.00 0.00 2.94
321 322 8.879759 TCAATTTCATCGACAACTAATTCCTAC 58.120 33.333 0.00 0.00 0.00 3.18
323 324 4.928601 TCATCGACAACTAATTCCTACGG 58.071 43.478 0.00 0.00 0.00 4.02
324 325 4.641541 TCATCGACAACTAATTCCTACGGA 59.358 41.667 0.00 0.00 0.00 4.69
326 327 3.379372 TCGACAACTAATTCCTACGGAGG 59.621 47.826 7.64 7.64 45.35 4.30
328 329 3.703052 GACAACTAATTCCTACGGAGGGA 59.297 47.826 15.51 5.02 43.94 4.20
329 330 3.705072 ACAACTAATTCCTACGGAGGGAG 59.295 47.826 15.51 8.96 43.94 4.30
330 331 3.684408 ACTAATTCCTACGGAGGGAGT 57.316 47.619 15.51 7.12 43.94 3.85
331 332 4.803329 ACTAATTCCTACGGAGGGAGTA 57.197 45.455 15.51 8.15 43.94 2.59
332 333 5.336491 ACTAATTCCTACGGAGGGAGTAT 57.664 43.478 15.51 0.00 43.94 2.12
334 335 3.614568 ATTCCTACGGAGGGAGTATGT 57.385 47.619 15.51 0.00 43.94 2.29
335 336 4.736611 ATTCCTACGGAGGGAGTATGTA 57.263 45.455 15.51 0.00 43.94 2.29
336 337 4.736611 TTCCTACGGAGGGAGTATGTAT 57.263 45.455 15.51 0.00 43.94 2.29
337 338 4.736611 TCCTACGGAGGGAGTATGTATT 57.263 45.455 15.51 0.00 43.94 1.89
338 339 5.070823 TCCTACGGAGGGAGTATGTATTT 57.929 43.478 15.51 0.00 43.94 1.40
339 340 4.831155 TCCTACGGAGGGAGTATGTATTTG 59.169 45.833 15.51 0.00 43.94 2.32
340 341 4.587684 CCTACGGAGGGAGTATGTATTTGT 59.412 45.833 5.47 0.00 39.48 2.83
342 343 5.786264 ACGGAGGGAGTATGTATTTGTAG 57.214 43.478 0.00 0.00 0.00 2.74
343 344 4.587684 ACGGAGGGAGTATGTATTTGTAGG 59.412 45.833 0.00 0.00 0.00 3.18
344 345 4.587684 CGGAGGGAGTATGTATTTGTAGGT 59.412 45.833 0.00 0.00 0.00 3.08
345 346 5.070047 CGGAGGGAGTATGTATTTGTAGGTT 59.930 44.000 0.00 0.00 0.00 3.50
346 347 6.407752 CGGAGGGAGTATGTATTTGTAGGTTT 60.408 42.308 0.00 0.00 0.00 3.27
347 348 6.990939 GGAGGGAGTATGTATTTGTAGGTTTC 59.009 42.308 0.00 0.00 0.00 2.78
348 349 7.365295 GGAGGGAGTATGTATTTGTAGGTTTCA 60.365 40.741 0.00 0.00 0.00 2.69
349 350 7.924541 AGGGAGTATGTATTTGTAGGTTTCAA 58.075 34.615 0.00 0.00 0.00 2.69
351 352 7.827729 GGGAGTATGTATTTGTAGGTTTCAACT 59.172 37.037 0.00 0.00 0.00 3.16
379 380 8.489489 TGATCTAGATTTATAATCTGATGGCCC 58.511 37.037 6.70 0.00 0.00 5.80
380 381 7.813087 TCTAGATTTATAATCTGATGGCCCA 57.187 36.000 0.00 0.00 0.00 5.36
381 382 8.218423 TCTAGATTTATAATCTGATGGCCCAA 57.782 34.615 0.00 0.00 0.00 4.12
382 383 8.324306 TCTAGATTTATAATCTGATGGCCCAAG 58.676 37.037 0.00 0.00 0.00 3.61
383 384 6.251471 AGATTTATAATCTGATGGCCCAAGG 58.749 40.000 0.00 0.00 0.00 3.61
384 385 2.986534 ATAATCTGATGGCCCAAGGG 57.013 50.000 0.00 0.00 38.57 3.95
385 386 1.607225 TAATCTGATGGCCCAAGGGT 58.393 50.000 7.05 0.00 37.65 4.34
386 387 0.259938 AATCTGATGGCCCAAGGGTC 59.740 55.000 1.88 1.88 41.01 4.46
389 390 0.040204 CTGATGGCCCAAGGGTCTTT 59.960 55.000 11.63 0.00 41.25 2.52
391 392 0.251787 GATGGCCCAAGGGTCTTTGT 60.252 55.000 11.63 0.00 41.25 2.83
392 393 0.190815 ATGGCCCAAGGGTCTTTGTT 59.809 50.000 11.63 0.00 41.25 2.83
396 397 1.273327 GCCCAAGGGTCTTTGTTGATG 59.727 52.381 7.05 0.00 37.65 3.07
397 398 1.273327 CCCAAGGGTCTTTGTTGATGC 59.727 52.381 0.00 0.00 0.00 3.91
399 400 2.564062 CCAAGGGTCTTTGTTGATGCAT 59.436 45.455 0.00 0.00 0.00 3.96
400 401 3.007182 CCAAGGGTCTTTGTTGATGCATT 59.993 43.478 0.00 0.00 0.00 3.56
401 402 4.503643 CCAAGGGTCTTTGTTGATGCATTT 60.504 41.667 0.00 0.00 0.00 2.32
402 403 5.279406 CCAAGGGTCTTTGTTGATGCATTTA 60.279 40.000 0.00 0.00 0.00 1.40
403 404 6.400568 CAAGGGTCTTTGTTGATGCATTTAT 58.599 36.000 0.00 0.00 0.00 1.40
404 405 7.363705 CCAAGGGTCTTTGTTGATGCATTTATA 60.364 37.037 0.00 0.00 0.00 0.98
405 406 7.338800 AGGGTCTTTGTTGATGCATTTATAG 57.661 36.000 0.00 0.00 0.00 1.31
406 407 6.891908 AGGGTCTTTGTTGATGCATTTATAGT 59.108 34.615 0.00 0.00 0.00 2.12
408 409 7.489113 GGGTCTTTGTTGATGCATTTATAGTTG 59.511 37.037 0.00 0.00 0.00 3.16
409 410 7.489113 GGTCTTTGTTGATGCATTTATAGTTGG 59.511 37.037 0.00 0.00 0.00 3.77
410 411 7.489113 GTCTTTGTTGATGCATTTATAGTTGGG 59.511 37.037 0.00 0.00 0.00 4.12
412 413 4.099266 TGTTGATGCATTTATAGTTGGGCC 59.901 41.667 0.00 0.00 0.00 5.80
413 414 4.183223 TGATGCATTTATAGTTGGGCCT 57.817 40.909 4.53 0.00 0.00 5.19
414 415 3.890756 TGATGCATTTATAGTTGGGCCTG 59.109 43.478 4.53 0.00 0.00 4.85
415 416 3.660970 TGCATTTATAGTTGGGCCTGA 57.339 42.857 4.53 0.00 0.00 3.86
416 417 4.183223 TGCATTTATAGTTGGGCCTGAT 57.817 40.909 4.53 0.00 0.00 2.90
418 419 4.144297 GCATTTATAGTTGGGCCTGATGA 58.856 43.478 4.53 0.00 0.00 2.92
419 420 4.768968 GCATTTATAGTTGGGCCTGATGAT 59.231 41.667 4.53 0.00 0.00 2.45
420 421 5.336213 GCATTTATAGTTGGGCCTGATGATG 60.336 44.000 4.53 0.55 0.00 3.07
421 422 5.645056 TTTATAGTTGGGCCTGATGATGA 57.355 39.130 4.53 0.00 0.00 2.92
423 424 1.588239 AGTTGGGCCTGATGATGAGA 58.412 50.000 4.53 0.00 0.00 3.27
425 426 0.841961 TTGGGCCTGATGATGAGAGG 59.158 55.000 4.53 0.00 0.00 3.69
432 433 3.816994 CCTGATGATGAGAGGCAATGAA 58.183 45.455 0.00 0.00 0.00 2.57
435 436 5.454329 CCTGATGATGAGAGGCAATGAAGTA 60.454 44.000 0.00 0.00 0.00 2.24
436 437 5.608449 TGATGATGAGAGGCAATGAAGTAG 58.392 41.667 0.00 0.00 0.00 2.57
438 439 5.682234 TGATGAGAGGCAATGAAGTAGAA 57.318 39.130 0.00 0.00 0.00 2.10
439 440 6.053632 TGATGAGAGGCAATGAAGTAGAAA 57.946 37.500 0.00 0.00 0.00 2.52
440 441 5.877012 TGATGAGAGGCAATGAAGTAGAAAC 59.123 40.000 0.00 0.00 0.00 2.78
441 442 5.227569 TGAGAGGCAATGAAGTAGAAACA 57.772 39.130 0.00 0.00 0.00 2.83
443 444 5.645067 TGAGAGGCAATGAAGTAGAAACATG 59.355 40.000 0.00 0.00 0.00 3.21
445 446 6.240894 AGAGGCAATGAAGTAGAAACATGAA 58.759 36.000 0.00 0.00 0.00 2.57
446 447 6.716628 AGAGGCAATGAAGTAGAAACATGAAA 59.283 34.615 0.00 0.00 0.00 2.69
447 448 7.231317 AGAGGCAATGAAGTAGAAACATGAAAA 59.769 33.333 0.00 0.00 0.00 2.29
448 449 7.899973 AGGCAATGAAGTAGAAACATGAAAAT 58.100 30.769 0.00 0.00 0.00 1.82
450 451 9.294030 GGCAATGAAGTAGAAACATGAAAATAG 57.706 33.333 0.00 0.00 0.00 1.73
451 452 8.801913 GCAATGAAGTAGAAACATGAAAATAGC 58.198 33.333 0.00 0.00 0.00 2.97
452 453 9.294030 CAATGAAGTAGAAACATGAAAATAGCC 57.706 33.333 0.00 0.00 0.00 3.93
454 455 6.377146 TGAAGTAGAAACATGAAAATAGCCCC 59.623 38.462 0.00 0.00 0.00 5.80
455 456 5.826643 AGTAGAAACATGAAAATAGCCCCA 58.173 37.500 0.00 0.00 0.00 4.96
456 457 6.252995 AGTAGAAACATGAAAATAGCCCCAA 58.747 36.000 0.00 0.00 0.00 4.12
457 458 5.405935 AGAAACATGAAAATAGCCCCAAC 57.594 39.130 0.00 0.00 0.00 3.77
458 459 4.222810 AGAAACATGAAAATAGCCCCAACC 59.777 41.667 0.00 0.00 0.00 3.77
459 460 3.182887 ACATGAAAATAGCCCCAACCA 57.817 42.857 0.00 0.00 0.00 3.67
460 461 3.723325 ACATGAAAATAGCCCCAACCAT 58.277 40.909 0.00 0.00 0.00 3.55
462 463 5.276440 ACATGAAAATAGCCCCAACCATAA 58.724 37.500 0.00 0.00 0.00 1.90
463 464 5.723887 ACATGAAAATAGCCCCAACCATAAA 59.276 36.000 0.00 0.00 0.00 1.40
465 466 6.882768 TGAAAATAGCCCCAACCATAAAAT 57.117 33.333 0.00 0.00 0.00 1.82
466 467 6.648192 TGAAAATAGCCCCAACCATAAAATG 58.352 36.000 0.00 0.00 0.00 2.32
467 468 4.687901 AATAGCCCCAACCATAAAATGC 57.312 40.909 0.00 0.00 0.00 3.56
468 469 1.949799 AGCCCCAACCATAAAATGCA 58.050 45.000 0.00 0.00 0.00 3.96
469 470 2.264455 AGCCCCAACCATAAAATGCAA 58.736 42.857 0.00 0.00 0.00 4.08
470 471 2.027285 AGCCCCAACCATAAAATGCAAC 60.027 45.455 0.00 0.00 0.00 4.17
472 473 2.571202 CCCCAACCATAAAATGCAACCT 59.429 45.455 0.00 0.00 0.00 3.50
474 475 4.382577 CCCCAACCATAAAATGCAACCTAC 60.383 45.833 0.00 0.00 0.00 3.18
475 476 4.382577 CCCAACCATAAAATGCAACCTACC 60.383 45.833 0.00 0.00 0.00 3.18
477 478 5.410067 CAACCATAAAATGCAACCTACCTG 58.590 41.667 0.00 0.00 0.00 4.00
478 479 4.672899 ACCATAAAATGCAACCTACCTGT 58.327 39.130 0.00 0.00 0.00 4.00
481 482 5.047377 CCATAAAATGCAACCTACCTGTTGT 60.047 40.000 0.00 0.00 45.80 3.32
482 483 6.454795 CATAAAATGCAACCTACCTGTTGTT 58.545 36.000 0.00 0.00 45.80 2.83
483 484 4.320608 AAATGCAACCTACCTGTTGTTG 57.679 40.909 0.00 0.00 45.80 3.33
484 485 2.428544 TGCAACCTACCTGTTGTTGT 57.571 45.000 5.87 0.00 45.80 3.32
486 487 3.093057 TGCAACCTACCTGTTGTTGTTT 58.907 40.909 5.87 0.00 45.80 2.83
487 488 3.129638 TGCAACCTACCTGTTGTTGTTTC 59.870 43.478 5.87 0.00 45.80 2.78
488 489 3.380320 GCAACCTACCTGTTGTTGTTTCT 59.620 43.478 5.87 0.00 45.80 2.52
489 490 4.497507 GCAACCTACCTGTTGTTGTTTCTC 60.498 45.833 5.87 0.00 45.80 2.87
490 491 3.816994 ACCTACCTGTTGTTGTTTCTCC 58.183 45.455 0.00 0.00 0.00 3.71
491 492 2.806244 CCTACCTGTTGTTGTTTCTCCG 59.194 50.000 0.00 0.00 0.00 4.63
492 493 2.413310 ACCTGTTGTTGTTTCTCCGT 57.587 45.000 0.00 0.00 0.00 4.69
493 494 2.285977 ACCTGTTGTTGTTTCTCCGTC 58.714 47.619 0.00 0.00 0.00 4.79
494 495 2.093128 ACCTGTTGTTGTTTCTCCGTCT 60.093 45.455 0.00 0.00 0.00 4.18
495 496 2.287915 CCTGTTGTTGTTTCTCCGTCTG 59.712 50.000 0.00 0.00 0.00 3.51
496 497 2.936498 CTGTTGTTGTTTCTCCGTCTGT 59.064 45.455 0.00 0.00 0.00 3.41
497 498 2.933906 TGTTGTTGTTTCTCCGTCTGTC 59.066 45.455 0.00 0.00 0.00 3.51
498 499 2.933906 GTTGTTGTTTCTCCGTCTGTCA 59.066 45.455 0.00 0.00 0.00 3.58
499 500 3.254470 TGTTGTTTCTCCGTCTGTCAA 57.746 42.857 0.00 0.00 0.00 3.18
500 501 3.804036 TGTTGTTTCTCCGTCTGTCAAT 58.196 40.909 0.00 0.00 0.00 2.57
501 502 3.807622 TGTTGTTTCTCCGTCTGTCAATC 59.192 43.478 0.00 0.00 0.00 2.67
502 503 3.744238 TGTTTCTCCGTCTGTCAATCA 57.256 42.857 0.00 0.00 0.00 2.57
503 504 4.271696 TGTTTCTCCGTCTGTCAATCAT 57.728 40.909 0.00 0.00 0.00 2.45
504 505 5.400066 TGTTTCTCCGTCTGTCAATCATA 57.600 39.130 0.00 0.00 0.00 2.15
549 665 5.682234 TGATGAGAGGCAATGAAGTAGAA 57.318 39.130 0.00 0.00 0.00 2.10
551 667 5.877012 TGATGAGAGGCAATGAAGTAGAAAC 59.123 40.000 0.00 0.00 0.00 2.78
690 806 4.360951 AAAATACTTCCTTCGTCCCACA 57.639 40.909 0.00 0.00 0.00 4.17
691 807 4.360951 AAATACTTCCTTCGTCCCACAA 57.639 40.909 0.00 0.00 0.00 3.33
692 808 4.569719 AATACTTCCTTCGTCCCACAAT 57.430 40.909 0.00 0.00 0.00 2.71
693 809 5.687166 AATACTTCCTTCGTCCCACAATA 57.313 39.130 0.00 0.00 0.00 1.90
694 810 5.888982 ATACTTCCTTCGTCCCACAATAT 57.111 39.130 0.00 0.00 0.00 1.28
695 811 6.989155 ATACTTCCTTCGTCCCACAATATA 57.011 37.500 0.00 0.00 0.00 0.86
696 812 5.687166 ACTTCCTTCGTCCCACAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
697 813 5.671493 ACTTCCTTCGTCCCACAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
698 814 5.424252 ACTTCCTTCGTCCCACAATATAAGA 59.576 40.000 0.00 0.00 0.00 2.10
699 815 5.943349 TCCTTCGTCCCACAATATAAGAA 57.057 39.130 0.00 0.00 0.00 2.52
700 816 5.667466 TCCTTCGTCCCACAATATAAGAAC 58.333 41.667 0.00 0.00 0.00 3.01
701 817 4.506654 CCTTCGTCCCACAATATAAGAACG 59.493 45.833 0.00 0.00 0.00 3.95
702 818 4.724074 TCGTCCCACAATATAAGAACGT 57.276 40.909 0.00 0.00 0.00 3.99
703 819 5.075858 TCGTCCCACAATATAAGAACGTT 57.924 39.130 0.00 0.00 0.00 3.99
704 820 5.481105 TCGTCCCACAATATAAGAACGTTT 58.519 37.500 0.46 0.00 0.00 3.60
705 821 5.933463 TCGTCCCACAATATAAGAACGTTTT 59.067 36.000 0.46 0.00 0.00 2.43
706 822 6.427547 TCGTCCCACAATATAAGAACGTTTTT 59.572 34.615 9.22 9.22 0.00 1.94
707 823 6.521821 CGTCCCACAATATAAGAACGTTTTTG 59.478 38.462 13.87 8.38 0.00 2.44
708 824 7.571613 CGTCCCACAATATAAGAACGTTTTTGA 60.572 37.037 13.87 2.81 0.00 2.69
709 825 7.536281 GTCCCACAATATAAGAACGTTTTTGAC 59.464 37.037 13.87 5.89 0.00 3.18
710 826 7.228906 TCCCACAATATAAGAACGTTTTTGACA 59.771 33.333 13.87 0.01 0.00 3.58
711 827 7.325097 CCCACAATATAAGAACGTTTTTGACAC 59.675 37.037 13.87 0.00 0.00 3.67
712 828 8.073768 CCACAATATAAGAACGTTTTTGACACT 58.926 33.333 13.87 0.00 0.00 3.55
720 836 7.781548 AGAACGTTTTTGACACTACATTAGT 57.218 32.000 0.46 0.00 40.28 2.24
751 867 6.446781 AACGTTCTTCTATTATGAGACGGA 57.553 37.500 0.00 0.00 0.00 4.69
752 868 6.062434 ACGTTCTTCTATTATGAGACGGAG 57.938 41.667 0.00 0.00 0.00 4.63
753 869 5.008811 ACGTTCTTCTATTATGAGACGGAGG 59.991 44.000 0.00 0.00 0.00 4.30
754 870 5.563085 CGTTCTTCTATTATGAGACGGAGGG 60.563 48.000 0.00 0.00 0.00 4.30
755 871 5.320488 TCTTCTATTATGAGACGGAGGGA 57.680 43.478 0.00 0.00 0.00 4.20
756 872 5.317808 TCTTCTATTATGAGACGGAGGGAG 58.682 45.833 0.00 0.00 0.00 4.30
757 873 4.726035 TCTATTATGAGACGGAGGGAGT 57.274 45.455 0.00 0.00 0.00 3.85
816 953 6.018425 GTCAATAGATGTCATGGCTTACACTG 60.018 42.308 0.00 0.00 0.00 3.66
817 954 3.988976 AGATGTCATGGCTTACACTGT 57.011 42.857 0.00 0.00 0.00 3.55
903 1056 2.173669 CGCATTGTAGTGCCCTCCG 61.174 63.158 0.00 0.00 42.06 4.63
982 1137 9.032420 AGCAAGTAGTATAAATAAAAGACTCGC 57.968 33.333 0.00 0.00 0.00 5.03
1369 1544 1.873903 GCGACTGGTCAATGTGTGAGT 60.874 52.381 1.63 0.00 36.74 3.41
1563 1761 0.036164 CGGTCCCCATGAACAAGACA 59.964 55.000 0.00 0.00 0.00 3.41
1870 4948 5.010617 GCAGGTGAGGTCCTTTTTCAAAATA 59.989 40.000 0.00 0.00 35.37 1.40
2069 5410 1.475403 CCGGCCAGAGAGAAGAACTA 58.525 55.000 2.24 0.00 0.00 2.24
2088 5432 2.950990 AACTCTCCCAGGGTGTCTAT 57.049 50.000 5.01 0.00 0.00 1.98
2123 5471 1.406069 CCATGGAAGACGAGTTCAGGG 60.406 57.143 5.56 0.00 0.00 4.45
2188 5539 1.301401 CACGGGCAACTTCTCGGAA 60.301 57.895 0.00 0.00 0.00 4.30
2190 5541 1.004918 CGGGCAACTTCTCGGAAGT 60.005 57.895 11.94 11.94 0.00 3.01
2249 5600 0.842467 AGGGTTCCTCAAGGACCTGG 60.842 60.000 7.29 0.00 45.39 4.45
2283 5634 3.449018 GCTATCAAGAGAGTGTCCAAGGA 59.551 47.826 0.00 0.00 0.00 3.36
2419 5771 0.461548 TCTACGAGCTGATGCCCAAG 59.538 55.000 0.00 0.00 40.80 3.61
2496 5850 2.925170 AGGCGACCTTCCAGCTGT 60.925 61.111 13.81 0.00 0.00 4.40
2507 5869 3.365364 CCTTCCAGCTGTTTGTTCGAATC 60.365 47.826 13.81 0.00 0.00 2.52
2522 5928 5.163824 TGTTCGAATCTCATGATTGCTTCAC 60.164 40.000 0.00 0.00 42.43 3.18
2528 5934 7.042254 CGAATCTCATGATTGCTTCACATCTAA 60.042 37.037 0.00 0.00 42.43 2.10
2530 5936 7.492352 TCTCATGATTGCTTCACATCTAATG 57.508 36.000 0.00 0.00 37.11 1.90
2531 5937 6.485648 TCTCATGATTGCTTCACATCTAATGG 59.514 38.462 0.00 0.00 37.11 3.16
2655 6217 1.651240 GCAATGTGATGCTGGACGCT 61.651 55.000 0.00 0.00 43.06 5.07
3196 8647 7.875041 AGCTAATATGATGGATGTTACTGTGTC 59.125 37.037 0.00 0.00 0.00 3.67
3267 8722 5.297569 AGTACAAAAGAAAGGACAGAGCT 57.702 39.130 0.00 0.00 0.00 4.09
3346 8811 7.870954 AGTACAAACATCTTTGAGTCATCGTTA 59.129 33.333 0.01 0.00 39.43 3.18
3361 8826 1.675219 GTTACCCGAGCACCCTCAA 59.325 57.895 0.00 0.00 38.00 3.02
3427 8893 3.430453 ACAATACAATGGGGTCAAGTGG 58.570 45.455 0.00 0.00 0.00 4.00
3436 8902 1.605753 GGGTCAAGTGGAAGGTCAAC 58.394 55.000 0.00 0.00 0.00 3.18
3455 8921 2.661718 ACTGGGATTTGGTTTGTCGTT 58.338 42.857 0.00 0.00 0.00 3.85
3622 9094 7.043961 TCTTCTATGCTTCGACAACTATCAT 57.956 36.000 0.00 0.00 0.00 2.45
3750 9236 3.113191 AGGAGGCTCTTTCTGATGAGA 57.887 47.619 15.23 2.73 32.44 3.27
3755 9241 3.837146 AGGCTCTTTCTGATGAGACTTGA 59.163 43.478 9.79 0.00 45.58 3.02
3795 9281 1.394917 CAGCGAATTTCACCTTCGAGG 59.605 52.381 9.40 0.03 46.36 4.63
3819 9305 1.595093 CCGCCAATTTGTGACCCTCC 61.595 60.000 0.00 0.00 0.00 4.30
3823 9309 1.453155 CAATTTGTGACCCTCCCGAG 58.547 55.000 0.00 0.00 0.00 4.63
3849 9335 0.529378 CCATGGCTTTCAGCTTGACC 59.471 55.000 0.00 0.00 41.99 4.02
3859 9345 2.825836 GCTTGACCCTCATGCCGG 60.826 66.667 0.00 0.00 40.42 6.13
3874 9361 0.392998 GCCGGGATGAGATTGTGTGT 60.393 55.000 2.18 0.00 0.00 3.72
3876 9363 2.550978 CCGGGATGAGATTGTGTGTAC 58.449 52.381 0.00 0.00 0.00 2.90
3900 9387 3.057596 CACACAAACGATGGGCATTACTT 60.058 43.478 0.00 0.00 35.04 2.24
3905 9392 1.206132 ACGATGGGCATTACTTCGTGA 59.794 47.619 5.72 0.00 43.88 4.35
4025 9516 1.691196 CTTGGTTGGCCACTCAAGAA 58.309 50.000 29.55 4.29 46.01 2.52
4058 9560 4.845580 CAAGCGAGGCTGGCCGAT 62.846 66.667 18.32 0.00 39.62 4.18
4066 9568 2.361104 GCTGGCCGATTTGTGGGA 60.361 61.111 0.00 0.00 0.00 4.37
4070 9572 1.134946 CTGGCCGATTTGTGGGATTTC 59.865 52.381 0.00 0.00 0.00 2.17
4206 9720 0.969894 CTTGAGAGGTCCGTCAAGGT 59.030 55.000 21.23 0.00 44.01 3.50
4223 9737 1.968540 GTCTGGTGGGTCAAGCAGC 60.969 63.158 0.00 0.00 43.75 5.25
4246 9760 0.635009 ACTCCTCCAACCCCGATAGA 59.365 55.000 0.00 0.00 39.76 1.98
4255 9769 3.434453 CCAACCCCGATAGAAAGGCAATA 60.434 47.826 0.00 0.00 39.76 1.90
4278 9792 2.291209 TCCATCACCATGCTTGTGTT 57.709 45.000 0.00 0.00 35.25 3.32
4291 9805 6.295011 CCATGCTTGTGTTTTGGGACTATTTA 60.295 38.462 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.043116 TGGAGCACCGATCCTACCTG 61.043 60.000 0.00 0.00 39.11 4.00
2 3 0.105453 ATGGAGCACCGATCCTACCT 60.105 55.000 0.00 0.00 39.11 3.08
4 5 0.034059 CCATGGAGCACCGATCCTAC 59.966 60.000 5.56 0.00 39.11 3.18
5 6 0.398522 ACCATGGAGCACCGATCCTA 60.399 55.000 21.47 0.00 39.11 2.94
6 7 1.690219 GACCATGGAGCACCGATCCT 61.690 60.000 21.47 0.00 39.11 3.24
7 8 1.227674 GACCATGGAGCACCGATCC 60.228 63.158 21.47 0.00 38.78 3.36
9 10 2.911143 GGACCATGGAGCACCGAT 59.089 61.111 21.47 0.00 39.42 4.18
12 13 3.391665 CTCCGGACCATGGAGCACC 62.392 68.421 21.47 14.38 45.99 5.01
13 14 2.187946 CTCCGGACCATGGAGCAC 59.812 66.667 21.47 6.60 45.99 4.40
17 18 3.147595 CTCGCTCCGGACCATGGA 61.148 66.667 21.47 0.00 0.00 3.41
18 19 3.144120 CTCTCGCTCCGGACCATGG 62.144 68.421 11.19 11.19 0.00 3.66
45 46 1.896660 GTTGTCGCTGGAAAGGGCA 60.897 57.895 0.00 0.00 0.00 5.36
48 49 0.593128 CCAAGTTGTCGCTGGAAAGG 59.407 55.000 1.45 0.00 0.00 3.11
49 50 1.002468 CACCAAGTTGTCGCTGGAAAG 60.002 52.381 1.45 0.00 0.00 2.62
50 51 1.021202 CACCAAGTTGTCGCTGGAAA 58.979 50.000 1.45 0.00 0.00 3.13
51 52 0.107410 ACACCAAGTTGTCGCTGGAA 60.107 50.000 1.45 0.00 0.00 3.53
53 54 1.464608 CATACACCAAGTTGTCGCTGG 59.535 52.381 1.45 0.00 0.00 4.85
54 55 2.096268 CACATACACCAAGTTGTCGCTG 60.096 50.000 1.45 0.00 0.00 5.18
55 56 2.143122 CACATACACCAAGTTGTCGCT 58.857 47.619 1.45 0.00 0.00 4.93
56 57 1.871039 ACACATACACCAAGTTGTCGC 59.129 47.619 1.45 0.00 0.00 5.19
57 58 3.848191 GCAACACATACACCAAGTTGTCG 60.848 47.826 1.45 0.00 41.07 4.35
58 59 3.066064 TGCAACACATACACCAAGTTGTC 59.934 43.478 1.45 0.00 41.07 3.18
59 60 3.020274 TGCAACACATACACCAAGTTGT 58.980 40.909 1.45 0.00 41.07 3.32
60 61 3.706802 TGCAACACATACACCAAGTTG 57.293 42.857 0.00 0.00 41.71 3.16
61 62 3.058293 CGATGCAACACATACACCAAGTT 60.058 43.478 0.00 0.00 39.84 2.66
62 63 2.483877 CGATGCAACACATACACCAAGT 59.516 45.455 0.00 0.00 39.84 3.16
64 65 2.772287 TCGATGCAACACATACACCAA 58.228 42.857 0.00 0.00 39.84 3.67
65 66 2.464157 TCGATGCAACACATACACCA 57.536 45.000 0.00 0.00 39.84 4.17
67 68 3.242413 GGACATCGATGCAACACATACAC 60.242 47.826 25.11 2.86 39.84 2.90
69 70 2.033747 CGGACATCGATGCAACACATAC 60.034 50.000 25.11 3.69 39.84 2.39
70 71 2.200899 CGGACATCGATGCAACACATA 58.799 47.619 25.11 0.00 39.84 2.29
71 72 1.009078 CGGACATCGATGCAACACAT 58.991 50.000 25.11 3.54 43.54 3.21
72 73 1.018752 CCGGACATCGATGCAACACA 61.019 55.000 25.11 0.00 42.43 3.72
73 74 1.019278 ACCGGACATCGATGCAACAC 61.019 55.000 25.11 11.10 42.43 3.32
74 75 1.018752 CACCGGACATCGATGCAACA 61.019 55.000 25.11 0.00 42.43 3.33
75 76 1.705337 CCACCGGACATCGATGCAAC 61.705 60.000 25.11 15.75 42.43 4.17
76 77 1.449423 CCACCGGACATCGATGCAA 60.449 57.895 25.11 0.00 42.43 4.08
77 78 2.178876 AACCACCGGACATCGATGCA 62.179 55.000 25.11 0.00 42.43 3.96
78 79 1.024579 AAACCACCGGACATCGATGC 61.025 55.000 25.11 16.82 42.43 3.91
79 80 1.006832 GAAACCACCGGACATCGATG 58.993 55.000 23.68 23.68 42.43 3.84
82 83 0.037697 TGAGAAACCACCGGACATCG 60.038 55.000 9.46 0.00 38.88 3.84
84 85 1.340017 CCATGAGAAACCACCGGACAT 60.340 52.381 9.46 0.00 0.00 3.06
85 86 0.036164 CCATGAGAAACCACCGGACA 59.964 55.000 9.46 0.00 0.00 4.02
86 87 0.323629 TCCATGAGAAACCACCGGAC 59.676 55.000 9.46 0.00 0.00 4.79
87 88 0.613260 CTCCATGAGAAACCACCGGA 59.387 55.000 9.46 0.00 0.00 5.14
88 89 0.392998 CCTCCATGAGAAACCACCGG 60.393 60.000 0.00 0.00 0.00 5.28
89 90 1.026718 GCCTCCATGAGAAACCACCG 61.027 60.000 0.00 0.00 0.00 4.94
90 91 0.038166 TGCCTCCATGAGAAACCACC 59.962 55.000 0.00 0.00 0.00 4.61
94 95 0.321653 ACCGTGCCTCCATGAGAAAC 60.322 55.000 0.00 0.00 0.00 2.78
95 96 0.036388 GACCGTGCCTCCATGAGAAA 60.036 55.000 0.00 0.00 0.00 2.52
96 97 0.904865 AGACCGTGCCTCCATGAGAA 60.905 55.000 0.00 0.00 0.00 2.87
97 98 1.305297 AGACCGTGCCTCCATGAGA 60.305 57.895 0.00 0.00 0.00 3.27
98 99 1.142748 GAGACCGTGCCTCCATGAG 59.857 63.158 0.00 0.00 0.00 2.90
102 103 1.228894 AAGAGAGACCGTGCCTCCA 60.229 57.895 0.00 0.00 0.00 3.86
103 104 0.968393 AGAAGAGAGACCGTGCCTCC 60.968 60.000 0.00 0.00 0.00 4.30
104 105 1.673920 CTAGAAGAGAGACCGTGCCTC 59.326 57.143 0.00 0.00 0.00 4.70
105 106 1.004979 ACTAGAAGAGAGACCGTGCCT 59.995 52.381 0.00 0.00 0.00 4.75
108 109 5.006941 GCTAGTAACTAGAAGAGAGACCGTG 59.993 48.000 0.00 0.00 36.26 4.94
109 110 5.118286 GCTAGTAACTAGAAGAGAGACCGT 58.882 45.833 0.00 0.00 36.26 4.83
110 111 4.512571 GGCTAGTAACTAGAAGAGAGACCG 59.487 50.000 0.00 0.00 36.26 4.79
111 112 5.687780 AGGCTAGTAACTAGAAGAGAGACC 58.312 45.833 0.00 0.00 36.26 3.85
113 114 5.453621 CCGAGGCTAGTAACTAGAAGAGAGA 60.454 48.000 0.00 0.00 36.26 3.10
114 115 4.753107 CCGAGGCTAGTAACTAGAAGAGAG 59.247 50.000 0.00 0.00 36.26 3.20
116 117 3.816523 CCCGAGGCTAGTAACTAGAAGAG 59.183 52.174 0.00 0.00 36.26 2.85
117 118 3.201708 ACCCGAGGCTAGTAACTAGAAGA 59.798 47.826 0.00 0.00 36.26 2.87
118 119 3.315749 CACCCGAGGCTAGTAACTAGAAG 59.684 52.174 0.00 0.00 36.26 2.85
119 120 3.285484 CACCCGAGGCTAGTAACTAGAA 58.715 50.000 0.00 0.00 36.26 2.10
120 121 2.240667 ACACCCGAGGCTAGTAACTAGA 59.759 50.000 0.00 0.00 36.26 2.43
121 122 2.358267 CACACCCGAGGCTAGTAACTAG 59.642 54.545 0.00 0.00 37.16 2.57
122 123 2.291153 ACACACCCGAGGCTAGTAACTA 60.291 50.000 0.00 0.00 0.00 2.24
123 124 1.183549 CACACCCGAGGCTAGTAACT 58.816 55.000 0.00 0.00 0.00 2.24
124 125 0.893447 ACACACCCGAGGCTAGTAAC 59.107 55.000 0.00 0.00 0.00 2.50
127 128 0.542232 AAGACACACCCGAGGCTAGT 60.542 55.000 0.00 0.00 0.00 2.57
128 129 0.108615 CAAGACACACCCGAGGCTAG 60.109 60.000 0.00 0.00 0.00 3.42
129 130 0.541063 TCAAGACACACCCGAGGCTA 60.541 55.000 0.00 0.00 0.00 3.93
130 131 1.194781 ATCAAGACACACCCGAGGCT 61.195 55.000 0.00 0.00 0.00 4.58
131 132 1.021390 CATCAAGACACACCCGAGGC 61.021 60.000 0.00 0.00 0.00 4.70
132 133 0.391661 CCATCAAGACACACCCGAGG 60.392 60.000 0.00 0.00 0.00 4.63
133 134 0.608130 TCCATCAAGACACACCCGAG 59.392 55.000 0.00 0.00 0.00 4.63
134 135 0.608130 CTCCATCAAGACACACCCGA 59.392 55.000 0.00 0.00 0.00 5.14
135 136 0.321671 ACTCCATCAAGACACACCCG 59.678 55.000 0.00 0.00 0.00 5.28
136 137 1.072331 ACACTCCATCAAGACACACCC 59.928 52.381 0.00 0.00 0.00 4.61
139 140 1.072173 CCCACACTCCATCAAGACACA 59.928 52.381 0.00 0.00 0.00 3.72
140 141 1.813513 CCCACACTCCATCAAGACAC 58.186 55.000 0.00 0.00 0.00 3.67
142 143 0.036732 TGCCCACACTCCATCAAGAC 59.963 55.000 0.00 0.00 0.00 3.01
143 144 0.036732 GTGCCCACACTCCATCAAGA 59.963 55.000 0.00 0.00 43.85 3.02
145 146 4.819783 GTGCCCACACTCCATCAA 57.180 55.556 0.00 0.00 43.85 2.57
154 155 3.181445 ACAAGATTACAAGAGTGCCCACA 60.181 43.478 0.82 0.00 0.00 4.17
155 156 3.412386 ACAAGATTACAAGAGTGCCCAC 58.588 45.455 0.00 0.00 0.00 4.61
156 157 3.788227 ACAAGATTACAAGAGTGCCCA 57.212 42.857 0.00 0.00 0.00 5.36
157 158 5.453567 AAAACAAGATTACAAGAGTGCCC 57.546 39.130 0.00 0.00 0.00 5.36
158 159 8.045176 AGATAAAACAAGATTACAAGAGTGCC 57.955 34.615 0.00 0.00 0.00 5.01
159 160 9.899226 AAAGATAAAACAAGATTACAAGAGTGC 57.101 29.630 0.00 0.00 0.00 4.40
171 172 9.453572 ACATAGCAGATCAAAGATAAAACAAGA 57.546 29.630 0.00 0.00 0.00 3.02
174 175 9.665719 TGTACATAGCAGATCAAAGATAAAACA 57.334 29.630 0.00 0.00 0.00 2.83
176 177 9.890629 AGTGTACATAGCAGATCAAAGATAAAA 57.109 29.630 0.00 0.00 0.00 1.52
178 179 8.695456 TGAGTGTACATAGCAGATCAAAGATAA 58.305 33.333 0.00 0.00 0.00 1.75
179 180 8.237811 TGAGTGTACATAGCAGATCAAAGATA 57.762 34.615 0.00 0.00 0.00 1.98
180 181 7.117285 TGAGTGTACATAGCAGATCAAAGAT 57.883 36.000 0.00 0.00 0.00 2.40
181 182 6.530019 TGAGTGTACATAGCAGATCAAAGA 57.470 37.500 0.00 0.00 0.00 2.52
184 185 6.097412 AGTGATGAGTGTACATAGCAGATCAA 59.903 38.462 0.00 0.00 0.00 2.57
185 186 5.595952 AGTGATGAGTGTACATAGCAGATCA 59.404 40.000 0.00 0.00 0.00 2.92
189 190 5.871524 ACAAAGTGATGAGTGTACATAGCAG 59.128 40.000 0.00 0.00 0.00 4.24
190 191 5.793817 ACAAAGTGATGAGTGTACATAGCA 58.206 37.500 0.00 0.00 0.00 3.49
191 192 7.096436 CGATACAAAGTGATGAGTGTACATAGC 60.096 40.741 0.00 0.00 29.71 2.97
192 193 7.379797 CCGATACAAAGTGATGAGTGTACATAG 59.620 40.741 0.00 0.00 29.71 2.23
194 195 6.042777 CCGATACAAAGTGATGAGTGTACAT 58.957 40.000 0.00 0.00 29.71 2.29
195 196 5.047590 ACCGATACAAAGTGATGAGTGTACA 60.048 40.000 0.00 0.00 29.71 2.90
198 199 4.537135 ACCGATACAAAGTGATGAGTGT 57.463 40.909 0.00 0.00 0.00 3.55
200 201 4.174009 CGAACCGATACAAAGTGATGAGT 58.826 43.478 0.00 0.00 0.00 3.41
201 202 3.551890 CCGAACCGATACAAAGTGATGAG 59.448 47.826 0.00 0.00 0.00 2.90
202 203 3.517602 CCGAACCGATACAAAGTGATGA 58.482 45.455 0.00 0.00 0.00 2.92
203 204 2.030457 GCCGAACCGATACAAAGTGATG 59.970 50.000 0.00 0.00 0.00 3.07
204 205 2.277084 GCCGAACCGATACAAAGTGAT 58.723 47.619 0.00 0.00 0.00 3.06
205 206 1.673626 GGCCGAACCGATACAAAGTGA 60.674 52.381 0.00 0.00 0.00 3.41
206 207 0.725117 GGCCGAACCGATACAAAGTG 59.275 55.000 0.00 0.00 0.00 3.16
207 208 3.148340 GGCCGAACCGATACAAAGT 57.852 52.632 0.00 0.00 0.00 2.66
217 218 2.344521 AAAAGCAACACGGCCGAACC 62.345 55.000 35.90 14.70 0.00 3.62
218 219 0.526739 AAAAAGCAACACGGCCGAAC 60.527 50.000 35.90 15.58 0.00 3.95
219 220 0.248702 GAAAAAGCAACACGGCCGAA 60.249 50.000 35.90 0.00 0.00 4.30
221 222 2.008697 CGAAAAAGCAACACGGCCG 61.009 57.895 26.86 26.86 0.00 6.13
223 224 0.308376 TACCGAAAAAGCAACACGGC 59.692 50.000 0.00 0.00 46.18 5.68
225 226 5.445845 AGTAATTACCGAAAAAGCAACACG 58.554 37.500 12.05 0.00 0.00 4.49
228 229 6.913673 TGACAAGTAATTACCGAAAAAGCAAC 59.086 34.615 12.05 0.00 0.00 4.17
229 230 6.913673 GTGACAAGTAATTACCGAAAAAGCAA 59.086 34.615 12.05 0.00 0.00 3.91
230 231 6.261381 AGTGACAAGTAATTACCGAAAAAGCA 59.739 34.615 12.05 0.00 0.00 3.91
231 232 6.665465 AGTGACAAGTAATTACCGAAAAAGC 58.335 36.000 12.05 0.00 0.00 3.51
232 233 7.857569 TGAGTGACAAGTAATTACCGAAAAAG 58.142 34.615 12.05 0.00 0.00 2.27
234 235 7.789273 TTGAGTGACAAGTAATTACCGAAAA 57.211 32.000 12.05 0.00 34.20 2.29
235 236 7.517101 CGTTTGAGTGACAAGTAATTACCGAAA 60.517 37.037 12.05 0.00 39.77 3.46
236 237 6.074195 CGTTTGAGTGACAAGTAATTACCGAA 60.074 38.462 12.05 0.00 39.77 4.30
237 238 5.403166 CGTTTGAGTGACAAGTAATTACCGA 59.597 40.000 12.05 0.00 39.77 4.69
238 239 5.389098 CCGTTTGAGTGACAAGTAATTACCG 60.389 44.000 12.05 6.55 39.77 4.02
239 240 5.616204 GCCGTTTGAGTGACAAGTAATTACC 60.616 44.000 12.05 0.00 39.77 2.85
240 241 5.178809 AGCCGTTTGAGTGACAAGTAATTAC 59.821 40.000 7.57 7.57 39.77 1.89
241 242 5.178623 CAGCCGTTTGAGTGACAAGTAATTA 59.821 40.000 0.00 0.00 39.77 1.40
242 243 4.024048 CAGCCGTTTGAGTGACAAGTAATT 60.024 41.667 0.00 0.00 39.77 1.40
245 246 2.159014 ACAGCCGTTTGAGTGACAAGTA 60.159 45.455 0.00 0.00 39.77 2.24
246 247 1.299541 CAGCCGTTTGAGTGACAAGT 58.700 50.000 0.00 0.00 39.77 3.16
247 248 1.299541 ACAGCCGTTTGAGTGACAAG 58.700 50.000 0.00 0.00 39.77 3.16
248 249 2.605837 TACAGCCGTTTGAGTGACAA 57.394 45.000 0.00 0.00 36.65 3.18
249 250 2.299013 AGATACAGCCGTTTGAGTGACA 59.701 45.455 0.00 0.00 0.00 3.58
251 252 3.428999 GCTAGATACAGCCGTTTGAGTGA 60.429 47.826 0.00 0.00 35.40 3.41
252 253 2.860735 GCTAGATACAGCCGTTTGAGTG 59.139 50.000 0.00 0.00 35.40 3.51
253 254 2.496070 TGCTAGATACAGCCGTTTGAGT 59.504 45.455 0.00 0.00 41.04 3.41
254 255 2.860735 GTGCTAGATACAGCCGTTTGAG 59.139 50.000 0.00 0.00 41.04 3.02
255 256 2.496070 AGTGCTAGATACAGCCGTTTGA 59.504 45.455 0.00 0.00 41.04 2.69
256 257 2.893637 AGTGCTAGATACAGCCGTTTG 58.106 47.619 0.00 0.00 41.04 2.93
258 259 4.730949 TTTAGTGCTAGATACAGCCGTT 57.269 40.909 0.00 0.00 41.04 4.44
259 260 4.730949 TTTTAGTGCTAGATACAGCCGT 57.269 40.909 0.00 0.00 41.04 5.68
260 261 6.868864 ACATATTTTAGTGCTAGATACAGCCG 59.131 38.462 0.00 0.00 41.04 5.52
261 262 8.608844 AACATATTTTAGTGCTAGATACAGCC 57.391 34.615 0.00 0.00 41.04 4.85
293 294 8.400947 AGGAATTAGTTGTCGATGAAATTGATG 58.599 33.333 0.00 0.00 39.36 3.07
294 295 8.511604 AGGAATTAGTTGTCGATGAAATTGAT 57.488 30.769 0.00 0.00 39.36 2.57
295 296 7.921786 AGGAATTAGTTGTCGATGAAATTGA 57.078 32.000 0.00 0.00 33.30 2.57
296 297 7.846107 CGTAGGAATTAGTTGTCGATGAAATTG 59.154 37.037 0.00 0.00 0.00 2.32
297 298 7.906160 CGTAGGAATTAGTTGTCGATGAAATT 58.094 34.615 0.00 0.00 0.00 1.82
299 300 6.880822 CGTAGGAATTAGTTGTCGATGAAA 57.119 37.500 0.00 0.00 0.00 2.69
318 319 5.786264 ACAAATACATACTCCCTCCGTAG 57.214 43.478 0.00 0.00 0.00 3.51
320 321 4.587684 CCTACAAATACATACTCCCTCCGT 59.412 45.833 0.00 0.00 0.00 4.69
321 322 4.587684 ACCTACAAATACATACTCCCTCCG 59.412 45.833 0.00 0.00 0.00 4.63
323 324 7.562135 TGAAACCTACAAATACATACTCCCTC 58.438 38.462 0.00 0.00 0.00 4.30
324 325 7.504926 TGAAACCTACAAATACATACTCCCT 57.495 36.000 0.00 0.00 0.00 4.20
326 327 8.788325 AGTTGAAACCTACAAATACATACTCC 57.212 34.615 0.00 0.00 0.00 3.85
353 354 8.489489 GGGCCATCAGATTATAAATCTAGATCA 58.511 37.037 4.39 0.00 0.00 2.92
355 356 8.397951 TGGGCCATCAGATTATAAATCTAGAT 57.602 34.615 0.00 0.00 0.00 1.98
356 357 7.813087 TGGGCCATCAGATTATAAATCTAGA 57.187 36.000 0.00 0.00 0.00 2.43
357 358 7.555554 CCTTGGGCCATCAGATTATAAATCTAG 59.444 40.741 7.26 0.00 0.00 2.43
358 359 7.405292 CCTTGGGCCATCAGATTATAAATCTA 58.595 38.462 7.26 0.00 0.00 1.98
359 360 6.251471 CCTTGGGCCATCAGATTATAAATCT 58.749 40.000 7.26 0.00 0.00 2.40
360 361 5.420104 CCCTTGGGCCATCAGATTATAAATC 59.580 44.000 7.26 0.00 0.00 2.17
361 362 5.162837 ACCCTTGGGCCATCAGATTATAAAT 60.163 40.000 7.26 0.00 0.00 1.40
362 363 4.169856 ACCCTTGGGCCATCAGATTATAAA 59.830 41.667 7.26 0.00 0.00 1.40
364 365 3.330701 GACCCTTGGGCCATCAGATTATA 59.669 47.826 7.26 0.00 0.00 0.98
365 366 2.108952 GACCCTTGGGCCATCAGATTAT 59.891 50.000 7.26 0.00 0.00 1.28
366 367 1.494721 GACCCTTGGGCCATCAGATTA 59.505 52.381 7.26 0.00 0.00 1.75
367 368 0.259938 GACCCTTGGGCCATCAGATT 59.740 55.000 7.26 0.00 0.00 2.40
368 369 0.625683 AGACCCTTGGGCCATCAGAT 60.626 55.000 7.26 0.00 0.00 2.90
369 370 0.846427 AAGACCCTTGGGCCATCAGA 60.846 55.000 7.26 0.00 0.00 3.27
370 371 0.040204 AAAGACCCTTGGGCCATCAG 59.960 55.000 7.26 1.75 0.00 2.90
371 372 0.251742 CAAAGACCCTTGGGCCATCA 60.252 55.000 7.26 0.00 0.00 3.07
374 375 0.758685 CAACAAAGACCCTTGGGCCA 60.759 55.000 0.00 0.00 0.00 5.36
375 376 0.469144 TCAACAAAGACCCTTGGGCC 60.469 55.000 5.46 0.00 0.00 5.80
376 377 1.273327 CATCAACAAAGACCCTTGGGC 59.727 52.381 5.46 0.00 0.00 5.36
378 379 1.962807 TGCATCAACAAAGACCCTTGG 59.037 47.619 0.00 0.00 0.00 3.61
379 380 3.947910 ATGCATCAACAAAGACCCTTG 57.052 42.857 0.00 0.00 0.00 3.61
380 381 4.961438 AAATGCATCAACAAAGACCCTT 57.039 36.364 0.00 0.00 0.00 3.95
381 382 6.891908 ACTATAAATGCATCAACAAAGACCCT 59.108 34.615 0.00 0.00 0.00 4.34
382 383 7.100458 ACTATAAATGCATCAACAAAGACCC 57.900 36.000 0.00 0.00 0.00 4.46
383 384 7.489113 CCAACTATAAATGCATCAACAAAGACC 59.511 37.037 0.00 0.00 0.00 3.85
384 385 7.489113 CCCAACTATAAATGCATCAACAAAGAC 59.511 37.037 0.00 0.00 0.00 3.01
385 386 7.546358 CCCAACTATAAATGCATCAACAAAGA 58.454 34.615 0.00 0.00 0.00 2.52
386 387 6.256321 GCCCAACTATAAATGCATCAACAAAG 59.744 38.462 0.00 0.00 0.00 2.77
389 390 4.099266 GGCCCAACTATAAATGCATCAACA 59.901 41.667 0.00 0.00 0.00 3.33
391 392 4.341806 CAGGCCCAACTATAAATGCATCAA 59.658 41.667 0.00 0.00 0.00 2.57
392 393 3.890756 CAGGCCCAACTATAAATGCATCA 59.109 43.478 0.00 0.00 0.00 3.07
396 397 4.144297 TCATCAGGCCCAACTATAAATGC 58.856 43.478 0.00 0.00 0.00 3.56
397 398 6.005823 TCATCATCAGGCCCAACTATAAATG 58.994 40.000 0.00 0.00 0.00 2.32
399 400 5.369404 TCTCATCATCAGGCCCAACTATAAA 59.631 40.000 0.00 0.00 0.00 1.40
400 401 4.907269 TCTCATCATCAGGCCCAACTATAA 59.093 41.667 0.00 0.00 0.00 0.98
401 402 4.492646 TCTCATCATCAGGCCCAACTATA 58.507 43.478 0.00 0.00 0.00 1.31
402 403 3.321039 TCTCATCATCAGGCCCAACTAT 58.679 45.455 0.00 0.00 0.00 2.12
403 404 2.702478 CTCTCATCATCAGGCCCAACTA 59.298 50.000 0.00 0.00 0.00 2.24
404 405 1.489649 CTCTCATCATCAGGCCCAACT 59.510 52.381 0.00 0.00 0.00 3.16
405 406 1.476471 CCTCTCATCATCAGGCCCAAC 60.476 57.143 0.00 0.00 0.00 3.77
406 407 0.841961 CCTCTCATCATCAGGCCCAA 59.158 55.000 0.00 0.00 0.00 4.12
408 409 1.072852 GCCTCTCATCATCAGGCCC 59.927 63.158 0.00 0.00 46.20 5.80
409 410 4.796314 GCCTCTCATCATCAGGCC 57.204 61.111 0.00 0.00 46.20 5.19
412 413 4.452825 ACTTCATTGCCTCTCATCATCAG 58.547 43.478 0.00 0.00 0.00 2.90
413 414 4.498894 ACTTCATTGCCTCTCATCATCA 57.501 40.909 0.00 0.00 0.00 3.07
414 415 5.851720 TCTACTTCATTGCCTCTCATCATC 58.148 41.667 0.00 0.00 0.00 2.92
415 416 5.883685 TCTACTTCATTGCCTCTCATCAT 57.116 39.130 0.00 0.00 0.00 2.45
416 417 5.682234 TTCTACTTCATTGCCTCTCATCA 57.318 39.130 0.00 0.00 0.00 3.07
418 419 5.809001 TGTTTCTACTTCATTGCCTCTCAT 58.191 37.500 0.00 0.00 0.00 2.90
419 420 5.227569 TGTTTCTACTTCATTGCCTCTCA 57.772 39.130 0.00 0.00 0.00 3.27
420 421 5.877012 TCATGTTTCTACTTCATTGCCTCTC 59.123 40.000 0.00 0.00 0.00 3.20
421 422 5.809001 TCATGTTTCTACTTCATTGCCTCT 58.191 37.500 0.00 0.00 0.00 3.69
423 424 6.899393 TTTCATGTTTCTACTTCATTGCCT 57.101 33.333 0.00 0.00 0.00 4.75
425 426 8.801913 GCTATTTTCATGTTTCTACTTCATTGC 58.198 33.333 0.00 0.00 0.00 3.56
426 427 9.294030 GGCTATTTTCATGTTTCTACTTCATTG 57.706 33.333 0.00 0.00 0.00 2.82
427 428 8.470002 GGGCTATTTTCATGTTTCTACTTCATT 58.530 33.333 0.00 0.00 0.00 2.57
428 429 7.068716 GGGGCTATTTTCATGTTTCTACTTCAT 59.931 37.037 0.00 0.00 0.00 2.57
429 430 6.377146 GGGGCTATTTTCATGTTTCTACTTCA 59.623 38.462 0.00 0.00 0.00 3.02
430 431 6.377146 TGGGGCTATTTTCATGTTTCTACTTC 59.623 38.462 0.00 0.00 0.00 3.01
432 433 5.826643 TGGGGCTATTTTCATGTTTCTACT 58.173 37.500 0.00 0.00 0.00 2.57
435 436 4.222810 GGTTGGGGCTATTTTCATGTTTCT 59.777 41.667 0.00 0.00 0.00 2.52
436 437 4.020662 TGGTTGGGGCTATTTTCATGTTTC 60.021 41.667 0.00 0.00 0.00 2.78
438 439 3.515562 TGGTTGGGGCTATTTTCATGTT 58.484 40.909 0.00 0.00 0.00 2.71
439 440 3.182887 TGGTTGGGGCTATTTTCATGT 57.817 42.857 0.00 0.00 0.00 3.21
440 441 5.867903 TTATGGTTGGGGCTATTTTCATG 57.132 39.130 0.00 0.00 0.00 3.07
441 442 6.882768 TTTTATGGTTGGGGCTATTTTCAT 57.117 33.333 0.00 0.00 0.00 2.57
443 444 5.527214 GCATTTTATGGTTGGGGCTATTTTC 59.473 40.000 0.00 0.00 0.00 2.29
445 446 4.472833 TGCATTTTATGGTTGGGGCTATTT 59.527 37.500 0.00 0.00 0.00 1.40
446 447 4.036518 TGCATTTTATGGTTGGGGCTATT 58.963 39.130 0.00 0.00 0.00 1.73
447 448 3.652055 TGCATTTTATGGTTGGGGCTAT 58.348 40.909 0.00 0.00 0.00 2.97
448 449 3.107402 TGCATTTTATGGTTGGGGCTA 57.893 42.857 0.00 0.00 0.00 3.93
450 451 2.355197 GTTGCATTTTATGGTTGGGGC 58.645 47.619 0.00 0.00 0.00 5.80
451 452 2.571202 AGGTTGCATTTTATGGTTGGGG 59.429 45.455 0.00 0.00 0.00 4.96
452 453 3.979101 AGGTTGCATTTTATGGTTGGG 57.021 42.857 0.00 0.00 0.00 4.12
454 455 5.047377 ACAGGTAGGTTGCATTTTATGGTTG 60.047 40.000 0.00 0.00 0.00 3.77
455 456 5.083821 ACAGGTAGGTTGCATTTTATGGTT 58.916 37.500 0.00 0.00 0.00 3.67
456 457 4.672899 ACAGGTAGGTTGCATTTTATGGT 58.327 39.130 0.00 0.00 0.00 3.55
457 458 5.410067 CAACAGGTAGGTTGCATTTTATGG 58.590 41.667 0.00 0.00 41.37 2.74
468 469 4.204799 GGAGAAACAACAACAGGTAGGTT 58.795 43.478 0.00 0.00 0.00 3.50
469 470 3.743269 CGGAGAAACAACAACAGGTAGGT 60.743 47.826 0.00 0.00 0.00 3.08
470 471 2.806244 CGGAGAAACAACAACAGGTAGG 59.194 50.000 0.00 0.00 0.00 3.18
472 473 3.133362 AGACGGAGAAACAACAACAGGTA 59.867 43.478 0.00 0.00 0.00 3.08
474 475 2.287915 CAGACGGAGAAACAACAACAGG 59.712 50.000 0.00 0.00 0.00 4.00
475 476 2.936498 ACAGACGGAGAAACAACAACAG 59.064 45.455 0.00 0.00 0.00 3.16
477 478 2.933906 TGACAGACGGAGAAACAACAAC 59.066 45.455 0.00 0.00 0.00 3.32
478 479 3.254470 TGACAGACGGAGAAACAACAA 57.746 42.857 0.00 0.00 0.00 2.83
481 482 4.066646 TGATTGACAGACGGAGAAACAA 57.933 40.909 0.00 0.00 0.00 2.83
482 483 3.744238 TGATTGACAGACGGAGAAACA 57.256 42.857 0.00 0.00 0.00 2.83
483 484 6.042777 TCATATGATTGACAGACGGAGAAAC 58.957 40.000 0.00 0.00 0.00 2.78
484 485 6.220726 TCATATGATTGACAGACGGAGAAA 57.779 37.500 0.00 0.00 0.00 2.52
486 487 5.852282 TTCATATGATTGACAGACGGAGA 57.148 39.130 6.17 0.00 0.00 3.71
487 488 6.218746 TGATTCATATGATTGACAGACGGAG 58.781 40.000 6.17 0.00 0.00 4.63
488 489 6.160576 TGATTCATATGATTGACAGACGGA 57.839 37.500 6.17 0.00 0.00 4.69
489 490 6.703165 TCTTGATTCATATGATTGACAGACGG 59.297 38.462 6.17 0.00 0.00 4.79
490 491 7.437565 ACTCTTGATTCATATGATTGACAGACG 59.562 37.037 6.17 3.05 0.00 4.18
491 492 8.659925 ACTCTTGATTCATATGATTGACAGAC 57.340 34.615 6.17 0.00 0.00 3.51
492 493 9.978044 CTACTCTTGATTCATATGATTGACAGA 57.022 33.333 6.17 4.45 0.00 3.41
493 494 9.978044 TCTACTCTTGATTCATATGATTGACAG 57.022 33.333 6.17 1.92 0.00 3.51
500 501 9.413734 TCAGTCTTCTACTCTTGATTCATATGA 57.586 33.333 0.00 0.00 35.76 2.15
503 504 9.413734 TCATCAGTCTTCTACTCTTGATTCATA 57.586 33.333 0.00 0.00 35.76 2.15
504 505 8.303780 TCATCAGTCTTCTACTCTTGATTCAT 57.696 34.615 0.00 0.00 35.76 2.57
549 665 8.842358 TGAGAACTAAAACCGAAATATCAGTT 57.158 30.769 0.00 0.00 0.00 3.16
675 791 5.914033 TCTTATATTGTGGGACGAAGGAAG 58.086 41.667 0.00 0.00 0.00 3.46
677 793 5.667466 GTTCTTATATTGTGGGACGAAGGA 58.333 41.667 0.00 0.00 0.00 3.36
678 794 4.506654 CGTTCTTATATTGTGGGACGAAGG 59.493 45.833 0.00 0.00 0.00 3.46
679 795 5.107133 ACGTTCTTATATTGTGGGACGAAG 58.893 41.667 0.00 0.00 0.00 3.79
680 796 5.075858 ACGTTCTTATATTGTGGGACGAA 57.924 39.130 0.00 0.00 0.00 3.85
682 798 5.789710 AAACGTTCTTATATTGTGGGACG 57.210 39.130 0.00 0.00 0.00 4.79
683 799 7.536281 GTCAAAAACGTTCTTATATTGTGGGAC 59.464 37.037 0.00 0.00 0.00 4.46
684 800 7.228906 TGTCAAAAACGTTCTTATATTGTGGGA 59.771 33.333 0.00 0.00 0.00 4.37
685 801 7.325097 GTGTCAAAAACGTTCTTATATTGTGGG 59.675 37.037 0.00 0.00 0.00 4.61
686 802 8.073768 AGTGTCAAAAACGTTCTTATATTGTGG 58.926 33.333 0.00 0.00 0.00 4.17
694 810 9.316730 ACTAATGTAGTGTCAAAAACGTTCTTA 57.683 29.630 0.00 0.00 37.69 2.10
695 811 8.205131 ACTAATGTAGTGTCAAAAACGTTCTT 57.795 30.769 0.00 0.00 37.69 2.52
696 812 7.781548 ACTAATGTAGTGTCAAAAACGTTCT 57.218 32.000 0.00 0.00 37.69 3.01
725 841 7.816031 TCCGTCTCATAATAGAAGAACGTTTTT 59.184 33.333 0.46 2.07 0.00 1.94
729 845 5.008811 CCTCCGTCTCATAATAGAAGAACGT 59.991 44.000 0.00 0.00 0.00 3.99
730 846 5.453648 CCTCCGTCTCATAATAGAAGAACG 58.546 45.833 0.00 0.00 0.00 3.95
731 847 5.535406 TCCCTCCGTCTCATAATAGAAGAAC 59.465 44.000 0.00 0.00 0.00 3.01
732 848 5.702266 TCCCTCCGTCTCATAATAGAAGAA 58.298 41.667 0.00 0.00 0.00 2.52
733 849 5.163077 ACTCCCTCCGTCTCATAATAGAAGA 60.163 44.000 0.00 0.00 0.00 2.87
734 850 5.074115 ACTCCCTCCGTCTCATAATAGAAG 58.926 45.833 0.00 0.00 0.00 2.85
739 855 4.456662 ACTACTCCCTCCGTCTCATAAT 57.543 45.455 0.00 0.00 0.00 1.28
740 856 3.947612 ACTACTCCCTCCGTCTCATAA 57.052 47.619 0.00 0.00 0.00 1.90
741 857 5.072736 TGATTACTACTCCCTCCGTCTCATA 59.927 44.000 0.00 0.00 0.00 2.15
742 858 3.947612 TTACTACTCCCTCCGTCTCAT 57.052 47.619 0.00 0.00 0.00 2.90
744 860 3.565063 GTGATTACTACTCCCTCCGTCTC 59.435 52.174 0.00 0.00 0.00 3.36
745 861 3.553904 GTGATTACTACTCCCTCCGTCT 58.446 50.000 0.00 0.00 0.00 4.18
747 863 2.024655 TGGTGATTACTACTCCCTCCGT 60.025 50.000 0.00 0.00 0.00 4.69
748 864 2.361438 GTGGTGATTACTACTCCCTCCG 59.639 54.545 0.00 0.00 35.61 4.63
751 867 3.778622 AGGTGGTGATTACTACTCCCT 57.221 47.619 4.16 0.00 38.26 4.20
752 868 3.181478 CGAAGGTGGTGATTACTACTCCC 60.181 52.174 4.16 0.00 38.26 4.30
753 869 4.043037 CGAAGGTGGTGATTACTACTCC 57.957 50.000 4.16 0.00 38.26 3.85
903 1056 2.030805 AGAAATCAACAAGCAAGCCGTC 60.031 45.455 0.00 0.00 0.00 4.79
958 1113 9.530633 AGGCGAGTCTTTTATTTATACTACTTG 57.469 33.333 0.00 0.00 0.00 3.16
982 1137 1.180456 TTGGTGCTGGCATTGACAGG 61.180 55.000 20.90 3.31 39.45 4.00
1563 1761 1.380302 GGTCACCAGCTCCCACATT 59.620 57.895 0.00 0.00 0.00 2.71
1620 1818 4.021925 GTCTGGCTCCCGTTGGCT 62.022 66.667 0.00 0.00 0.00 4.75
1710 2876 3.118408 TGTTAAGACAGTTGGTGCACTCT 60.118 43.478 17.98 7.54 0.00 3.24
1870 4948 8.072567 GTCTATGAAGATTACCGTACAACGTAT 58.927 37.037 0.00 0.00 35.29 3.06
2053 5394 4.993905 GAGAGTTAGTTCTTCTCTCTGGC 58.006 47.826 18.01 0.00 45.96 4.85
2069 5410 2.753247 GATAGACACCCTGGGAGAGTT 58.247 52.381 22.23 5.47 0.00 3.01
2099 5443 0.693049 AACTCGTCTTCCATGGCCTT 59.307 50.000 6.96 0.00 0.00 4.35
2175 5526 2.755650 TCTTGACTTCCGAGAAGTTGC 58.244 47.619 16.93 8.73 32.40 4.17
2188 5539 0.610687 CTTCCCCGAGCTTCTTGACT 59.389 55.000 0.00 0.00 0.00 3.41
2190 5541 1.983224 CCTTCCCCGAGCTTCTTGA 59.017 57.895 0.00 0.00 0.00 3.02
2249 5600 2.365617 TCTTGATAGCCACCTCGATTCC 59.634 50.000 0.00 0.00 0.00 3.01
2283 5634 1.623834 CCTTCCTCCCCTGCTTAGAGT 60.624 57.143 0.00 0.00 0.00 3.24
2398 5750 2.119886 GGGCATCAGCTCGTAGACT 58.880 57.895 0.00 0.00 41.70 3.24
2419 5771 0.179097 GGTGAAGATCGAGACTGCCC 60.179 60.000 0.00 0.00 0.00 5.36
2425 5777 4.618460 GCACTGTAAAGGTGAAGATCGAGA 60.618 45.833 0.00 0.00 36.89 4.04
2458 5810 1.274703 ACCTGACTGGCCACCATAGG 61.275 60.000 0.00 10.21 40.22 2.57
2482 5834 1.264288 GAACAAACAGCTGGAAGGTCG 59.736 52.381 19.93 1.42 44.61 4.79
2491 5843 4.318332 TCATGAGATTCGAACAAACAGCT 58.682 39.130 0.00 0.00 0.00 4.24
2496 5850 5.885230 AGCAATCATGAGATTCGAACAAA 57.115 34.783 0.00 0.00 42.46 2.83
2507 5869 6.262496 ACCATTAGATGTGAAGCAATCATGAG 59.738 38.462 0.09 0.00 40.97 2.90
2522 5928 5.364778 TGAACCATAACCGACCATTAGATG 58.635 41.667 0.00 0.00 0.00 2.90
2528 5934 1.408266 GCCTGAACCATAACCGACCAT 60.408 52.381 0.00 0.00 0.00 3.55
2530 5936 0.035820 TGCCTGAACCATAACCGACC 60.036 55.000 0.00 0.00 0.00 4.79
2531 5937 2.038387 ATGCCTGAACCATAACCGAC 57.962 50.000 0.00 0.00 0.00 4.79
2655 6217 1.827315 CGAGCTTGGCGTTGAACGAA 61.827 55.000 23.12 6.79 46.05 3.85
2817 6379 2.324860 CACGCGATCTCAAGTAACACA 58.675 47.619 15.93 0.00 0.00 3.72
2823 6385 2.507102 CCGCACGCGATCTCAAGT 60.507 61.111 15.93 0.00 42.83 3.16
3168 8619 7.658982 CACAGTAACATCCATCATATTAGCTGT 59.341 37.037 0.00 0.00 0.00 4.40
3277 8732 1.139256 TGCGGGTTAACACAAGTCTGA 59.861 47.619 8.90 0.00 0.00 3.27
3346 8811 1.841556 TTCTTGAGGGTGCTCGGGT 60.842 57.895 0.00 0.00 0.00 5.28
3361 8826 3.190535 ACGTTCAAGCTTGTTTGTGTTCT 59.809 39.130 25.19 0.00 0.00 3.01
3427 8893 2.876581 ACCAAATCCCAGTTGACCTTC 58.123 47.619 0.00 0.00 0.00 3.46
3436 8902 2.884639 AGAACGACAAACCAAATCCCAG 59.115 45.455 0.00 0.00 0.00 4.45
3455 8921 0.836400 AGTCCTCCCCGCTCAAAAGA 60.836 55.000 0.00 0.00 0.00 2.52
3480 8946 4.566004 TGCGAATTTAGTAGTGTTGAGCT 58.434 39.130 0.00 0.00 0.00 4.09
3622 9094 1.004161 TCTTCGCACCATTCCCAATGA 59.996 47.619 0.00 0.00 41.46 2.57
3717 9203 5.046288 AGAGCCTCCTTTATCTTCCAATG 57.954 43.478 0.00 0.00 0.00 2.82
3750 9236 2.746472 GCTTGACCTTGGACACTCAAGT 60.746 50.000 14.84 0.00 41.11 3.16
3755 9241 0.839946 ACAGCTTGACCTTGGACACT 59.160 50.000 0.00 0.00 0.00 3.55
3782 9268 1.067142 CGGATGTCCTCGAAGGTGAAA 60.067 52.381 0.00 0.00 36.53 2.69
3795 9281 1.135402 GGTCACAAATTGGCGGATGTC 60.135 52.381 0.00 0.00 0.00 3.06
3849 9335 0.399454 AATCTCATCCCGGCATGAGG 59.601 55.000 30.68 15.21 46.88 3.86
3859 9345 2.348666 GTGCGTACACACAATCTCATCC 59.651 50.000 9.13 0.00 46.61 3.51
3874 9361 1.570347 GCCCATCGTTTGTGTGCGTA 61.570 55.000 0.00 0.00 0.00 4.42
3876 9363 2.126888 GCCCATCGTTTGTGTGCG 60.127 61.111 0.00 0.00 0.00 5.34
3900 9387 3.484524 GTGTAAGCGGAAGTCACGA 57.515 52.632 0.00 0.00 0.00 4.35
3923 9410 2.173569 AGTAGGAGGTGCCCATGAATTC 59.826 50.000 0.00 0.00 37.37 2.17
3987 9478 3.923017 AGCGAAGAATTTGACTTTGGG 57.077 42.857 0.00 0.00 31.56 4.12
3989 9480 4.610945 ACCAAGCGAAGAATTTGACTTTG 58.389 39.130 0.00 0.00 33.38 2.77
4025 9516 1.560505 CTTGGCCAACCTATTGCCTT 58.439 50.000 16.05 0.00 34.75 4.35
4030 9521 0.394352 CCTCGCTTGGCCAACCTATT 60.394 55.000 16.05 0.00 36.63 1.73
4178 9692 2.103094 CGGACCTCTCAAGATGCCAATA 59.897 50.000 0.00 0.00 0.00 1.90
4206 9720 2.431683 GCTGCTTGACCCACCAGA 59.568 61.111 0.00 0.00 0.00 3.86
4246 9760 3.026694 GGTGATGGAAGCTATTGCCTTT 58.973 45.455 0.00 0.00 40.80 3.11
4255 9769 1.272313 ACAAGCATGGTGATGGAAGCT 60.272 47.619 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.