Multiple sequence alignment - TraesCS7B01G040500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G040500 chr7B 100.000 7558 0 0 1 7558 40359696 40352139 0.000000e+00 13958
1 TraesCS7B01G040500 chr7B 94.355 372 17 3 7186 7557 40442662 40443029 1.100000e-157 568
2 TraesCS7B01G040500 chr7B 98.438 192 2 1 5569 5760 619432581 619432391 3.380000e-88 337
3 TraesCS7B01G040500 chr7B 83.668 349 27 18 6283 6624 40441943 40442268 1.230000e-77 302
4 TraesCS7B01G040500 chr7D 94.983 4166 147 25 1450 5578 89603980 89599840 0.000000e+00 6479
5 TraesCS7B01G040500 chr7D 91.347 1826 103 25 5759 7554 89599857 89598057 0.000000e+00 2446
6 TraesCS7B01G040500 chr7D 93.577 903 44 8 521 1413 89604872 89603974 0.000000e+00 1334
7 TraesCS7B01G040500 chr7D 89.238 669 46 17 6906 7556 89523669 89523009 0.000000e+00 813
8 TraesCS7B01G040500 chr7D 87.500 672 59 16 6906 7554 89487814 89487145 0.000000e+00 752
9 TraesCS7B01G040500 chr7D 91.499 447 28 9 7117 7556 89730584 89731027 2.330000e-169 606
10 TraesCS7B01G040500 chr7D 84.363 518 21 31 3 487 89605455 89604965 3.220000e-123 453
11 TraesCS7B01G040500 chr7D 82.111 341 28 18 6289 6624 89729944 89730256 2.090000e-65 261
12 TraesCS7B01G040500 chr7D 77.160 324 25 16 6288 6606 89789621 89789900 7.910000e-30 143
13 TraesCS7B01G040500 chr7A 95.151 3568 131 22 2033 5578 90621338 90617791 0.000000e+00 5592
14 TraesCS7B01G040500 chr7A 92.902 1578 82 13 487 2037 90622991 90621417 0.000000e+00 2266
15 TraesCS7B01G040500 chr7A 90.459 1373 82 22 5761 7121 90617806 90616471 0.000000e+00 1764
16 TraesCS7B01G040500 chr7A 87.168 678 59 17 6906 7557 90587887 90587212 0.000000e+00 745
17 TraesCS7B01G040500 chr7A 83.671 692 67 27 6904 7553 622950263 622950950 1.800000e-170 610
18 TraesCS7B01G040500 chr7A 95.763 354 15 0 7203 7556 90663968 90664321 8.510000e-159 571
19 TraesCS7B01G040500 chr7A 89.655 406 31 10 7157 7556 91016162 91016562 2.430000e-139 507
20 TraesCS7B01G040500 chr7A 86.024 508 26 16 1 487 90623507 90623024 3.150000e-138 503
21 TraesCS7B01G040500 chr7A 81.792 346 37 18 6283 6624 90663230 90663553 4.500000e-67 267
22 TraesCS7B01G040500 chr5A 97.487 199 5 0 5566 5764 6212954 6212756 2.610000e-89 340
23 TraesCS7B01G040500 chr4A 95.775 213 5 4 5567 5778 391545101 391545310 2.610000e-89 340
24 TraesCS7B01G040500 chr3B 98.953 191 0 2 5578 5767 112101010 112100821 2.610000e-89 340
25 TraesCS7B01G040500 chr6B 98.429 191 3 0 5569 5759 1159922 1160112 3.380000e-88 337
26 TraesCS7B01G040500 chr6B 98.438 192 2 1 5574 5765 656278167 656277977 3.380000e-88 337
27 TraesCS7B01G040500 chr6B 96.985 199 1 4 5568 5763 25588943 25589139 5.650000e-86 329
28 TraesCS7B01G040500 chr2B 98.413 189 3 0 5571 5759 71234635 71234447 4.370000e-87 333
29 TraesCS7B01G040500 chr4B 92.373 236 9 9 5560 5790 530887080 530887311 2.030000e-85 327


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G040500 chr7B 40352139 40359696 7557 True 13958.00 13958 100.0000 1 7558 1 chr7B.!!$R1 7557
1 TraesCS7B01G040500 chr7B 40441943 40443029 1086 False 435.00 568 89.0115 6283 7557 2 chr7B.!!$F1 1274
2 TraesCS7B01G040500 chr7D 89598057 89605455 7398 True 2678.00 6479 91.0675 3 7554 4 chr7D.!!$R3 7551
3 TraesCS7B01G040500 chr7D 89523009 89523669 660 True 813.00 813 89.2380 6906 7556 1 chr7D.!!$R2 650
4 TraesCS7B01G040500 chr7D 89487145 89487814 669 True 752.00 752 87.5000 6906 7554 1 chr7D.!!$R1 648
5 TraesCS7B01G040500 chr7D 89729944 89731027 1083 False 433.50 606 86.8050 6289 7556 2 chr7D.!!$F2 1267
6 TraesCS7B01G040500 chr7A 90616471 90623507 7036 True 2531.25 5592 91.1340 1 7121 4 chr7A.!!$R2 7120
7 TraesCS7B01G040500 chr7A 90587212 90587887 675 True 745.00 745 87.1680 6906 7557 1 chr7A.!!$R1 651
8 TraesCS7B01G040500 chr7A 622950263 622950950 687 False 610.00 610 83.6710 6904 7553 1 chr7A.!!$F2 649
9 TraesCS7B01G040500 chr7A 90663230 90664321 1091 False 419.00 571 88.7775 6283 7556 2 chr7A.!!$F3 1273

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 320 0.378257 TCCGTCGGCGTCAGTAATAC 59.622 55.0 9.28 0.0 36.15 1.89 F
1071 1185 0.031585 CTGCTTGCTGCTTTGCTTCA 59.968 50.0 0.00 0.0 43.37 3.02 F
1072 1186 0.677288 TGCTTGCTGCTTTGCTTCAT 59.323 45.0 0.00 0.0 43.37 2.57 F
2605 2817 0.391661 ACCTGTGCCGACATGACATC 60.392 55.0 0.00 0.0 0.00 3.06 F
3101 3323 3.145286 CTGATATCTGCAGAGGACTCGA 58.855 50.0 22.96 0.0 35.39 4.04 F
4939 5186 1.604604 GAGTTACTTGGCCTGCAACA 58.395 50.0 3.32 0.0 0.00 3.33 F
5605 5859 0.032678 CCTAGTGCATGTAGCTCCCG 59.967 60.0 0.00 0.0 45.94 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1288 1402 0.390866 ATCCAGCAGTGAGTGAAGCG 60.391 55.0 0.00 0.0 0.00 4.68 R
2589 2794 0.252761 ATGGATGTCATGTCGGCACA 59.747 50.0 0.00 0.0 34.22 4.57 R
2962 3184 1.610554 TTGGCTCCAGGGCGTACTAC 61.611 60.0 0.00 0.0 44.11 2.73 R
4411 4652 0.389037 CAGAACGCTGTCAGCTGCTA 60.389 55.0 22.13 0.0 39.60 3.49 R
4985 5232 0.035881 TGGCCTCAGAGCAAACTCAG 59.964 55.0 3.32 0.0 46.09 3.35 R
5922 6176 0.104356 TGGTCTCCCAGGGGTTGTAA 60.104 55.0 5.33 0.0 35.17 2.41 R
7272 7652 0.104672 TGGTGGAGAGGAAAGGTGGA 60.105 55.0 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 187 1.710816 CCCCCTCCTCTAGCTACTTG 58.289 60.000 0.00 0.00 0.00 3.16
173 188 1.218196 CCCCCTCCTCTAGCTACTTGA 59.782 57.143 0.00 0.00 0.00 3.02
174 189 2.158234 CCCCCTCCTCTAGCTACTTGAT 60.158 54.545 0.00 0.00 0.00 2.57
259 285 4.459089 GCCGGAGCAGGTCAGGTC 62.459 72.222 18.61 8.62 42.33 3.85
260 286 2.997315 CCGGAGCAGGTCAGGTCA 60.997 66.667 10.43 0.00 35.85 4.02
261 287 2.575993 CGGAGCAGGTCAGGTCAG 59.424 66.667 1.20 0.00 37.74 3.51
262 288 2.985456 GGAGCAGGTCAGGTCAGG 59.015 66.667 1.20 0.00 37.74 3.86
263 289 2.267324 GAGCAGGTCAGGTCAGGC 59.733 66.667 0.00 0.00 36.11 4.85
270 296 2.680352 TCAGGTCAGGCGGACTCC 60.680 66.667 17.11 1.93 46.16 3.85
291 317 2.693762 CCTCCGTCGGCGTCAGTAA 61.694 63.158 9.28 0.00 36.15 2.24
293 319 0.659427 CTCCGTCGGCGTCAGTAATA 59.341 55.000 9.28 0.00 36.15 0.98
294 320 0.378257 TCCGTCGGCGTCAGTAATAC 59.622 55.000 9.28 0.00 36.15 1.89
295 321 0.379669 CCGTCGGCGTCAGTAATACT 59.620 55.000 9.28 0.00 36.15 2.12
296 322 1.599071 CCGTCGGCGTCAGTAATACTA 59.401 52.381 9.28 0.00 36.15 1.82
297 323 2.349249 CCGTCGGCGTCAGTAATACTAG 60.349 54.545 9.28 0.00 36.15 2.57
298 324 2.286294 CGTCGGCGTCAGTAATACTAGT 59.714 50.000 6.85 0.00 0.00 2.57
299 325 3.490896 CGTCGGCGTCAGTAATACTAGTA 59.509 47.826 6.85 4.77 0.00 1.82
300 326 4.375807 CGTCGGCGTCAGTAATACTAGTAG 60.376 50.000 6.85 0.00 0.00 2.57
301 327 4.509600 GTCGGCGTCAGTAATACTAGTAGT 59.490 45.833 6.85 8.47 0.00 2.73
302 328 5.692204 GTCGGCGTCAGTAATACTAGTAGTA 59.308 44.000 12.38 12.38 34.82 1.82
303 329 6.367422 GTCGGCGTCAGTAATACTAGTAGTAT 59.633 42.308 15.79 15.79 42.86 2.12
304 330 7.542477 GTCGGCGTCAGTAATACTAGTAGTATA 59.458 40.741 20.65 8.68 40.32 1.47
305 331 7.542477 TCGGCGTCAGTAATACTAGTAGTATAC 59.458 40.741 20.65 17.40 40.32 1.47
342 368 4.517952 TGTCCATTGCGTTGAATTGAAT 57.482 36.364 0.00 0.00 0.00 2.57
346 372 6.259608 TGTCCATTGCGTTGAATTGAATTTTT 59.740 30.769 0.00 0.00 0.00 1.94
347 373 6.574462 GTCCATTGCGTTGAATTGAATTTTTG 59.426 34.615 0.00 0.00 0.00 2.44
348 374 6.259608 TCCATTGCGTTGAATTGAATTTTTGT 59.740 30.769 0.00 0.00 0.00 2.83
392 425 0.727398 ATAGAAGTTTGCGCCGCTTC 59.273 50.000 20.68 20.68 38.97 3.86
393 426 1.598130 AGAAGTTTGCGCCGCTTCT 60.598 52.632 23.45 23.45 42.65 2.85
489 555 5.007234 TCTGTTTCATTTCGTTCATTCGTGT 59.993 36.000 0.00 0.00 0.00 4.49
497 563 2.159421 TCGTTCATTCGTGTAGCCTCTC 60.159 50.000 0.00 0.00 0.00 3.20
550 641 0.442699 GTCGGTGTTCTTGCGATTCC 59.557 55.000 0.00 0.00 0.00 3.01
572 676 0.760567 TCTGCAGGTGAGTGGTGTCT 60.761 55.000 15.13 0.00 0.00 3.41
582 686 1.668151 GTGGTGTCTTGCCGGAGAC 60.668 63.158 14.83 14.83 44.97 3.36
596 700 0.389757 GGAGACGGGCCTTGATAGAC 59.610 60.000 0.84 0.00 0.00 2.59
742 846 1.464997 GTCAGAGATTTTGGTGGCGTC 59.535 52.381 0.00 0.00 0.00 5.19
759 864 2.137528 TCTGTTCCCTGTGTCGCCA 61.138 57.895 0.00 0.00 0.00 5.69
765 870 1.450312 CCCTGTGTCGCCATCTTCC 60.450 63.158 0.00 0.00 0.00 3.46
817 922 3.118592 GGTGATCTTCTTCTGGATCCGTT 60.119 47.826 7.39 0.00 37.96 4.44
858 963 6.801377 TCTTGCGTGTTCTTGCTAAAATTATG 59.199 34.615 0.00 0.00 0.00 1.90
862 967 6.194692 GCGTGTTCTTGCTAAAATTATGTAGC 59.805 38.462 8.19 8.19 42.56 3.58
882 995 2.802057 GCAATTGCTTCCATCTCATGCC 60.802 50.000 23.21 0.00 38.21 4.40
948 1061 1.322442 GCTGAACCAAAGCTGGAACT 58.678 50.000 0.00 0.00 46.92 3.01
992 1105 5.111989 GTCATCTAGCTGTTGCATTGTCTA 58.888 41.667 0.00 0.00 42.74 2.59
994 1107 3.525537 TCTAGCTGTTGCATTGTCTAGC 58.474 45.455 0.00 0.00 42.74 3.42
1071 1185 0.031585 CTGCTTGCTGCTTTGCTTCA 59.968 50.000 0.00 0.00 43.37 3.02
1072 1186 0.677288 TGCTTGCTGCTTTGCTTCAT 59.323 45.000 0.00 0.00 43.37 2.57
1228 1342 2.700773 GGTCGGGCCACTTTCATGC 61.701 63.158 4.39 0.00 37.17 4.06
1288 1402 2.048127 AACCTCTGCTTCCGTCGC 60.048 61.111 0.00 0.00 0.00 5.19
1414 1528 9.448587 AGTACATAAGAGGTAATGGTTTATCCT 57.551 33.333 0.00 0.00 37.07 3.24
1415 1529 9.490379 GTACATAAGAGGTAATGGTTTATCCTG 57.510 37.037 0.00 0.00 37.07 3.86
1433 1547 3.964688 TCCTGTCTCTTAGTTGAACCACA 59.035 43.478 0.00 0.00 0.00 4.17
1802 1920 1.762708 AACTGGGCGGTATGGATTTG 58.237 50.000 0.00 0.00 0.00 2.32
1826 1944 5.873179 TTCTTCCATTTACGATGGTCAAC 57.127 39.130 5.07 0.00 40.06 3.18
1835 1953 3.334583 ACGATGGTCAACTACAATGCT 57.665 42.857 0.00 0.00 0.00 3.79
1879 1997 6.371548 TGATTGCTGTTCTGTTAGAATGTACC 59.628 38.462 0.00 0.00 36.50 3.34
1959 2078 8.659925 TTTGCAAACTTTGTGATGTTCATAAT 57.340 26.923 8.05 0.00 27.77 1.28
2124 2326 5.412594 TCTGCAAAATGATTCTCTGTACACC 59.587 40.000 0.00 0.00 0.00 4.16
2128 2330 6.150140 GCAAAATGATTCTCTGTACACCTTCT 59.850 38.462 0.00 0.00 0.00 2.85
2479 2684 0.953960 AAGTTGATCCCACGTTCCGC 60.954 55.000 0.00 0.00 0.00 5.54
2533 2738 5.879763 TCACATATGCTAAACATGGCCTAT 58.120 37.500 3.32 0.00 40.06 2.57
2583 2788 9.216117 AGGTACTAATTGCTAGTAGTTTTGTTG 57.784 33.333 13.15 0.00 42.58 3.33
2584 2789 8.996271 GGTACTAATTGCTAGTAGTTTTGTTGT 58.004 33.333 13.15 0.00 42.58 3.32
2586 2791 8.671384 ACTAATTGCTAGTAGTTTTGTTGTCA 57.329 30.769 2.40 0.00 39.20 3.58
2587 2792 8.557029 ACTAATTGCTAGTAGTTTTGTTGTCAC 58.443 33.333 2.40 0.00 39.20 3.67
2588 2793 5.744666 TTGCTAGTAGTTTTGTTGTCACC 57.255 39.130 0.00 0.00 0.00 4.02
2589 2794 5.031066 TGCTAGTAGTTTTGTTGTCACCT 57.969 39.130 0.00 0.00 0.00 4.00
2590 2795 4.814234 TGCTAGTAGTTTTGTTGTCACCTG 59.186 41.667 0.00 0.00 0.00 4.00
2605 2817 0.391661 ACCTGTGCCGACATGACATC 60.392 55.000 0.00 0.00 0.00 3.06
2622 2834 6.694877 TGACATCCATACTAGTACTGTCAC 57.305 41.667 22.68 9.13 37.27 3.67
2847 3069 9.860650 AATAACCATAAATACAATGCTAGTCCA 57.139 29.630 0.00 0.00 0.00 4.02
2975 3197 3.368116 GCATAATAGGTAGTACGCCCTGG 60.368 52.174 14.52 0.00 32.08 4.45
2992 3214 3.335579 CCTGGAGCCAAACTTACACTAC 58.664 50.000 0.00 0.00 0.00 2.73
3101 3323 3.145286 CTGATATCTGCAGAGGACTCGA 58.855 50.000 22.96 0.00 35.39 4.04
3116 3338 5.931294 AGGACTCGAGATCTTGATACTGTA 58.069 41.667 21.68 0.00 0.00 2.74
3319 3541 9.737844 TCTTATAATGTTATAATCCAGCATGCA 57.262 29.630 21.98 0.00 35.66 3.96
3386 3610 3.494251 TGAGATGTCACACGTGTTTCATG 59.506 43.478 28.35 15.86 0.00 3.07
3417 3641 5.833406 TTGTATATGAGTGGTTTGGCATG 57.167 39.130 0.00 0.00 0.00 4.06
3444 3668 5.771469 TGACTTTGTTTCATGCATTACTGG 58.229 37.500 0.00 0.00 0.00 4.00
3486 3710 4.509600 GTCAAGATCTACACTGCCATTAGC 59.490 45.833 0.00 0.00 44.14 3.09
3670 3897 5.892348 AGGGCCCTTGATATATACAAAAGG 58.108 41.667 22.28 10.84 37.69 3.11
3690 3917 4.341487 AGGGCAACTAACCAGGTAAAATC 58.659 43.478 0.00 0.00 0.00 2.17
3732 3959 6.316140 TGCTGATCCACTATTACATTGTTCAC 59.684 38.462 0.00 0.00 0.00 3.18
3738 3965 7.047891 TCCACTATTACATTGTTCACTGGATC 58.952 38.462 0.00 0.00 0.00 3.36
3755 3982 4.903149 TGGATCTCCTCCCCTGTTTATAA 58.097 43.478 0.00 0.00 44.23 0.98
3837 4069 6.426937 TGAACTTGGTTATCTGTTAGCACTTC 59.573 38.462 0.00 0.00 0.00 3.01
3895 4127 7.944729 AATTATTGTGGACAGACTATTGCTT 57.055 32.000 0.00 0.00 0.00 3.91
3896 4128 6.985188 TTATTGTGGACAGACTATTGCTTC 57.015 37.500 0.00 0.00 0.00 3.86
3897 4129 4.350368 TTGTGGACAGACTATTGCTTCA 57.650 40.909 0.00 0.00 0.00 3.02
3914 4146 5.187687 TGCTTCATCAGTGCTTGATTGATA 58.812 37.500 2.11 0.00 44.14 2.15
4184 4424 7.979115 TTTAAAACTGAAATTCTGAACCACG 57.021 32.000 6.87 0.00 0.00 4.94
4411 4652 4.876107 CGGTATCTGTTTTCCATGTTAGCT 59.124 41.667 0.00 0.00 0.00 3.32
4542 4783 7.329962 CGGAAACTGTTTAAAACCAGAACTTTT 59.670 33.333 5.64 3.43 0.00 2.27
4585 4830 9.499479 GTGGATATCAAGACATCATCATTTAGT 57.501 33.333 4.83 0.00 0.00 2.24
4660 4905 6.737254 TCTAACAAACTAACTAGCATTGGC 57.263 37.500 0.00 0.00 41.61 4.52
4856 5102 9.797642 TGCATGTTCATCCTAGTAAATGATTAT 57.202 29.630 0.00 0.00 32.24 1.28
4939 5186 1.604604 GAGTTACTTGGCCTGCAACA 58.395 50.000 3.32 0.00 0.00 3.33
4985 5232 9.815936 CATTGATTTTCCTTATGTTTTTCTTGC 57.184 29.630 0.00 0.00 0.00 4.01
5001 5248 1.805345 CTTGCTGAGTTTGCTCTGAGG 59.195 52.381 6.83 0.00 41.44 3.86
5223 5470 4.141937 ACTGCTACTCACAGTCACAAAGAA 60.142 41.667 0.00 0.00 45.06 2.52
5357 5608 7.275560 GCAATTGTTCCAATAGGTACACATTTC 59.724 37.037 7.40 0.00 43.78 2.17
5359 5610 7.681939 TTGTTCCAATAGGTACACATTTCTC 57.318 36.000 0.00 0.00 43.78 2.87
5362 5613 5.902681 TCCAATAGGTACACATTTCTCTCG 58.097 41.667 0.00 0.00 35.89 4.04
5363 5614 5.421056 TCCAATAGGTACACATTTCTCTCGT 59.579 40.000 0.00 0.00 35.89 4.18
5364 5615 5.520288 CCAATAGGTACACATTTCTCTCGTG 59.480 44.000 0.00 0.00 36.70 4.35
5365 5616 5.916661 ATAGGTACACATTTCTCTCGTGT 57.083 39.130 0.00 0.00 45.42 4.49
5366 5617 3.914312 AGGTACACATTTCTCTCGTGTG 58.086 45.455 4.74 3.42 46.47 3.82
5367 5618 3.572682 AGGTACACATTTCTCTCGTGTGA 59.427 43.478 11.23 0.00 44.48 3.58
5368 5619 4.038763 AGGTACACATTTCTCTCGTGTGAA 59.961 41.667 11.23 2.78 44.48 3.18
5370 5621 5.062308 GGTACACATTTCTCTCGTGTGAATC 59.938 44.000 11.23 2.24 44.48 2.52
5373 5624 5.527214 ACACATTTCTCTCGTGTGAATCAAA 59.473 36.000 11.23 0.00 44.48 2.69
5374 5625 6.038161 ACACATTTCTCTCGTGTGAATCAAAA 59.962 34.615 11.23 0.00 44.48 2.44
5375 5626 6.358030 CACATTTCTCTCGTGTGAATCAAAAC 59.642 38.462 3.16 0.00 44.48 2.43
5410 5664 1.808411 TCGCTTGGAATCTGGTCAAC 58.192 50.000 0.00 0.00 0.00 3.18
5425 5679 1.539827 GTCAACGCACAGCCCTTAATT 59.460 47.619 0.00 0.00 0.00 1.40
5456 5710 2.046988 CTGCAGATGACGTGCCCA 60.047 61.111 8.42 0.00 40.43 5.36
5486 5740 3.253188 TCCTGCTTTTGAAAATGGAGTCG 59.747 43.478 8.62 0.00 32.20 4.18
5536 5790 3.068590 CACCCAGTTCAAATGAAACTGCT 59.931 43.478 9.86 1.15 35.58 4.24
5583 5837 8.957466 GGTATGATACATTTTCCTATAAAGGGC 58.043 37.037 4.83 0.00 43.84 5.19
5584 5838 9.515226 GTATGATACATTTTCCTATAAAGGGCA 57.485 33.333 0.00 0.00 43.84 5.36
5586 5840 8.232913 TGATACATTTTCCTATAAAGGGCAAC 57.767 34.615 0.00 0.00 43.84 4.17
5600 5854 1.017387 GGCAACCTAGTGCATGTAGC 58.983 55.000 7.55 0.00 46.81 3.58
5601 5855 1.407437 GGCAACCTAGTGCATGTAGCT 60.407 52.381 7.55 0.00 46.81 3.32
5602 5856 1.936547 GCAACCTAGTGCATGTAGCTC 59.063 52.381 0.00 0.00 44.29 4.09
5603 5857 2.555199 CAACCTAGTGCATGTAGCTCC 58.445 52.381 0.00 0.00 45.94 4.70
5604 5858 1.123928 ACCTAGTGCATGTAGCTCCC 58.876 55.000 0.00 0.00 45.94 4.30
5605 5859 0.032678 CCTAGTGCATGTAGCTCCCG 59.967 60.000 0.00 0.00 45.94 5.14
5606 5860 0.598680 CTAGTGCATGTAGCTCCCGC 60.599 60.000 0.00 0.00 45.94 6.13
5608 5862 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
5609 5863 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
5610 5864 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
5611 5865 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
5614 5868 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
5626 5880 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
5627 5881 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
5628 5882 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
5629 5883 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
5630 5884 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
5631 5885 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
5632 5886 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
5633 5887 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
5634 5888 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
5635 5889 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
5636 5890 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
5637 5891 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
5638 5892 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
5639 5893 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
5640 5894 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
5641 5895 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
5642 5896 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
5643 5897 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
5644 5898 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
5654 5908 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
5655 5909 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
5656 5910 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
5657 5911 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
5658 5912 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
5659 5913 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
5660 5914 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
5661 5915 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
5662 5916 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
5663 5917 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
5664 5918 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
5665 5919 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
5666 5920 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
5667 5921 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
5668 5922 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
5669 5923 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
5670 5924 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
5671 5925 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
5672 5926 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
5673 5927 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
5674 5928 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
5675 5929 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
5676 5930 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
5677 5931 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
5678 5932 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
5679 5933 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
5680 5934 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
5692 5946 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
5693 5947 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
5694 5948 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
5695 5949 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
5696 5950 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
5697 5951 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
5698 5952 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
5699 5953 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
5700 5954 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
5701 5955 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
5702 5956 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
5703 5957 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
5704 5958 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
5705 5959 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
5706 5960 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
5707 5961 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
5708 5962 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
5709 5963 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
5710 5964 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
5711 5965 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
5712 5966 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
5713 5967 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
5725 5979 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
5726 5980 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
5727 5981 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
5728 5982 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
5729 5983 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
5730 5984 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
5731 5985 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
5732 5986 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
5733 5987 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
5734 5988 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
5735 5989 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
5736 5990 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
5737 5991 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
5738 5992 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
5739 5993 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
5740 5994 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
5744 5998 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
5745 5999 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
5746 6000 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
5747 6001 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
5748 6002 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
5749 6003 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
5750 6004 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
5751 6005 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
5808 6062 3.947612 ATTCCCTGTCTTGCTGATCAT 57.052 42.857 0.00 0.00 0.00 2.45
5809 6063 2.996249 TCCCTGTCTTGCTGATCATC 57.004 50.000 0.00 0.00 0.00 2.92
5810 6064 1.487976 TCCCTGTCTTGCTGATCATCC 59.512 52.381 0.00 0.00 0.00 3.51
5811 6065 1.489649 CCCTGTCTTGCTGATCATCCT 59.510 52.381 0.00 0.00 0.00 3.24
5812 6066 2.092538 CCCTGTCTTGCTGATCATCCTT 60.093 50.000 0.00 0.00 0.00 3.36
5838 6092 8.197592 TCCTTTGGTCATACTAAACTTGACTA 57.802 34.615 0.00 0.00 39.70 2.59
5973 6227 2.051518 GGCCCCGATGATGCAACAA 61.052 57.895 0.00 0.00 0.00 2.83
6018 6272 4.424566 GGCTCGAACGGGTACGCA 62.425 66.667 10.84 0.00 46.04 5.24
6021 6275 3.620300 CTCGAACGGGTACGCAGCA 62.620 63.158 10.84 0.00 46.04 4.41
6252 6506 0.464373 CTGTCCAGGGCAATGCGTAT 60.464 55.000 0.00 0.00 0.00 3.06
6255 6509 1.128200 TCCAGGGCAATGCGTATACT 58.872 50.000 0.00 0.00 0.00 2.12
6300 6554 5.450965 CCACAGATGAAAACTTTGTTCTGCT 60.451 40.000 9.36 0.00 35.20 4.24
6377 6635 1.593209 GAGTGACACGGCCGTTGAA 60.593 57.895 32.11 14.30 0.00 2.69
6407 6665 0.601558 GGAGTGTAGCTGGTTCGTCA 59.398 55.000 0.00 0.00 0.00 4.35
6496 6754 7.785028 GTGAGTCTGGGGGATATATATACATCA 59.215 40.741 7.27 3.81 0.00 3.07
6566 6824 8.547967 AATGTGACGATTCTTTGTAGTGTAAT 57.452 30.769 0.00 0.00 0.00 1.89
6630 6888 0.445436 GTTGCTCTGCGAATCACTGG 59.555 55.000 0.00 0.00 0.00 4.00
6815 7084 5.465724 CCCCTATACTAACAGTTTTCGATGC 59.534 44.000 0.00 0.00 0.00 3.91
6834 7105 1.869503 CGCACAACATTGCTAGTTCG 58.130 50.000 0.00 0.00 40.62 3.95
6835 7106 1.464023 CGCACAACATTGCTAGTTCGG 60.464 52.381 0.00 0.00 40.62 4.30
6839 7110 4.219033 CACAACATTGCTAGTTCGGTTTC 58.781 43.478 0.00 0.00 0.00 2.78
6847 7118 5.418310 TGCTAGTTCGGTTTCTTTCTTTG 57.582 39.130 0.00 0.00 0.00 2.77
6933 7205 7.421599 TGCAAGATTGATTTGTCTCGTTTTTA 58.578 30.769 0.00 0.00 0.00 1.52
6954 7229 7.534085 TTTATGAGTATTAACCTGCACTTCG 57.466 36.000 0.00 0.00 0.00 3.79
6957 7232 5.730550 TGAGTATTAACCTGCACTTCGATT 58.269 37.500 0.00 0.00 0.00 3.34
7069 7375 9.724839 AAACCGTTGCATACATTATATTAACAC 57.275 29.630 0.00 0.00 0.00 3.32
7272 7652 3.545703 GACGGATCCCATGAACAATCTT 58.454 45.455 6.06 0.00 0.00 2.40
7344 7724 4.083802 CGCATCTCCTCGATTATTTTTCCC 60.084 45.833 0.00 0.00 0.00 3.97
7557 7937 2.016393 GCCCGGTCGATGAGATGACA 62.016 60.000 0.00 0.00 36.83 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 179 3.056107 TGAGCAACGGTAATCAAGTAGCT 60.056 43.478 0.00 0.00 0.00 3.32
168 183 3.498397 CAGTTGAGCAACGGTAATCAAGT 59.502 43.478 7.62 1.18 45.50 3.16
169 184 3.120199 CCAGTTGAGCAACGGTAATCAAG 60.120 47.826 11.46 0.00 45.50 3.02
172 187 2.695359 TCCAGTTGAGCAACGGTAATC 58.305 47.619 17.33 0.00 45.50 1.75
173 188 2.851263 TCCAGTTGAGCAACGGTAAT 57.149 45.000 17.33 0.00 45.50 1.89
174 189 2.614481 GGATCCAGTTGAGCAACGGTAA 60.614 50.000 6.95 6.33 45.50 2.85
224 242 2.106683 CAAGCAATCCCCGGTCGTC 61.107 63.158 0.00 0.00 0.00 4.20
276 302 0.379669 AGTATTACTGACGCCGACGG 59.620 55.000 10.29 10.29 46.04 4.79
293 319 8.899427 TCAATTCAGCGTAGTATACTACTAGT 57.101 34.615 30.80 17.61 44.97 2.57
296 322 9.464714 CAATTCAATTCAGCGTAGTATACTACT 57.535 33.333 30.80 17.00 44.97 2.57
297 323 9.245962 ACAATTCAATTCAGCGTAGTATACTAC 57.754 33.333 26.67 26.67 44.00 2.73
298 324 9.459640 GACAATTCAATTCAGCGTAGTATACTA 57.540 33.333 8.59 8.59 40.12 1.82
299 325 7.438459 GGACAATTCAATTCAGCGTAGTATACT 59.562 37.037 10.87 10.87 40.12 2.12
300 326 7.223971 TGGACAATTCAATTCAGCGTAGTATAC 59.776 37.037 0.00 0.00 38.50 1.47
301 327 7.269316 TGGACAATTCAATTCAGCGTAGTATA 58.731 34.615 0.00 0.00 0.00 1.47
302 328 6.112734 TGGACAATTCAATTCAGCGTAGTAT 58.887 36.000 0.00 0.00 0.00 2.12
303 329 5.483811 TGGACAATTCAATTCAGCGTAGTA 58.516 37.500 0.00 0.00 0.00 1.82
304 330 4.323417 TGGACAATTCAATTCAGCGTAGT 58.677 39.130 0.00 0.00 0.00 2.73
305 331 4.944962 TGGACAATTCAATTCAGCGTAG 57.055 40.909 0.00 0.00 0.00 3.51
306 332 5.639757 CAATGGACAATTCAATTCAGCGTA 58.360 37.500 0.00 0.00 0.00 4.42
307 333 4.487948 CAATGGACAATTCAATTCAGCGT 58.512 39.130 0.00 0.00 0.00 5.07
308 334 3.305094 GCAATGGACAATTCAATTCAGCG 59.695 43.478 0.00 0.00 0.00 5.18
309 335 3.305094 CGCAATGGACAATTCAATTCAGC 59.695 43.478 0.00 0.00 0.00 4.26
314 340 4.517952 TCAACGCAATGGACAATTCAAT 57.482 36.364 0.00 0.00 0.00 2.57
342 368 5.491323 AAGAACAAGGGGACAAACAAAAA 57.509 34.783 0.00 0.00 0.00 1.94
346 372 3.436243 ACAAAGAACAAGGGGACAAACA 58.564 40.909 0.00 0.00 0.00 2.83
347 373 3.488553 CGACAAAGAACAAGGGGACAAAC 60.489 47.826 0.00 0.00 0.00 2.93
348 374 2.685897 CGACAAAGAACAAGGGGACAAA 59.314 45.455 0.00 0.00 0.00 2.83
458 491 1.740025 CGAAATGAAACAGAGGAGCCC 59.260 52.381 0.00 0.00 0.00 5.19
489 555 2.832129 ACAAATGGTCGAAGAGAGGCTA 59.168 45.455 0.00 0.00 36.95 3.93
550 641 2.433838 CCACTCACCTGCAGAGCG 60.434 66.667 17.39 4.87 36.58 5.03
557 648 0.886490 GGCAAGACACCACTCACCTG 60.886 60.000 0.00 0.00 0.00 4.00
582 686 1.051812 ATCCTGTCTATCAAGGCCCG 58.948 55.000 0.00 0.00 0.00 6.13
742 846 2.425592 TGGCGACACAGGGAACAG 59.574 61.111 0.00 0.00 33.40 3.16
759 864 2.119801 ATGAGCTGCAAACGGAAGAT 57.880 45.000 1.02 0.00 0.00 2.40
765 870 2.523015 GATCCAAATGAGCTGCAAACG 58.477 47.619 1.02 0.00 0.00 3.60
817 922 4.395854 ACGCAAGATCAATCAATACAGCAA 59.604 37.500 0.00 0.00 43.62 3.91
862 967 2.693591 AGGCATGAGATGGAAGCAATTG 59.306 45.455 0.00 0.00 0.00 2.32
877 982 7.012704 AGCATTTACTACAAATCTACAGGCATG 59.987 37.037 0.00 0.00 0.00 4.06
948 1061 3.588511 TGCATGGGGCCTGGAACA 61.589 61.111 0.84 0.00 43.89 3.18
1010 1123 3.317603 ACGCAAGCCAAATAAATGCTT 57.682 38.095 0.00 0.00 45.69 3.91
1071 1185 2.694397 TGTCCTAGCTGGCCTGATTAT 58.306 47.619 14.77 0.00 35.26 1.28
1072 1186 2.174685 TGTCCTAGCTGGCCTGATTA 57.825 50.000 14.77 4.12 35.26 1.75
1228 1342 5.846203 ACACAATTCAACATCCAAAGGAAG 58.154 37.500 0.00 0.00 34.34 3.46
1288 1402 0.390866 ATCCAGCAGTGAGTGAAGCG 60.391 55.000 0.00 0.00 0.00 4.68
1411 1525 3.964688 TGTGGTTCAACTAAGAGACAGGA 59.035 43.478 0.00 0.00 0.00 3.86
1413 1527 5.180117 CCATTGTGGTTCAACTAAGAGACAG 59.820 44.000 0.00 0.00 38.97 3.51
1414 1528 5.063204 CCATTGTGGTTCAACTAAGAGACA 58.937 41.667 0.00 0.00 38.97 3.41
1415 1529 4.083271 GCCATTGTGGTTCAACTAAGAGAC 60.083 45.833 0.00 0.00 40.46 3.36
1433 1547 0.517316 GAAACGCTCAGTTCGCCATT 59.483 50.000 0.00 0.00 43.37 3.16
1761 1879 0.668535 GTGTCTTTGAAAGGCGCCTT 59.331 50.000 35.84 35.84 37.65 4.35
1767 1885 3.243068 CCCAGTTTCGTGTCTTTGAAAGG 60.243 47.826 4.94 0.00 34.96 3.11
1802 1920 5.873179 TGACCATCGTAAATGGAAGAAAC 57.127 39.130 10.91 0.00 41.64 2.78
1826 1944 4.732285 AACAAAGACGACAGCATTGTAG 57.268 40.909 0.00 0.00 37.76 2.74
1835 1953 6.855914 GCAATCATAAGAAAACAAAGACGACA 59.144 34.615 0.00 0.00 0.00 4.35
1879 1997 8.197439 AGGGTTTTTGATACAAAAAGAGAACTG 58.803 33.333 18.37 0.00 31.05 3.16
1938 2057 7.878477 AGCATTATGAACATCACAAAGTTTG 57.122 32.000 14.13 14.13 0.00 2.93
1959 2078 8.537016 AGTAAGACTGTACATTTTACCATAGCA 58.463 33.333 15.20 0.00 0.00 3.49
2101 2303 5.413833 AGGTGTACAGAGAATCATTTTGCAG 59.586 40.000 0.00 0.00 37.82 4.41
2409 2614 1.345741 TCTTCAGTGCAACCTGAGGAG 59.654 52.381 13.18 7.19 41.14 3.69
2479 2684 7.658179 TCTGCCATAATTAATAAGCTCTTCG 57.342 36.000 0.00 0.00 0.00 3.79
2533 2738 8.267894 CCTCCTGAACTAGAATCATCCTTAAAA 58.732 37.037 0.00 0.00 0.00 1.52
2583 2788 1.005037 TCATGTCGGCACAGGTGAC 60.005 57.895 3.10 0.00 35.71 3.67
2584 2789 1.005037 GTCATGTCGGCACAGGTGA 60.005 57.895 3.10 0.00 35.71 4.02
2585 2790 0.674581 ATGTCATGTCGGCACAGGTG 60.675 55.000 0.00 0.00 35.71 4.00
2586 2791 0.391661 GATGTCATGTCGGCACAGGT 60.392 55.000 0.00 0.00 35.71 4.00
2587 2792 1.091771 GGATGTCATGTCGGCACAGG 61.092 60.000 0.00 0.00 35.41 4.00
2588 2793 0.391528 TGGATGTCATGTCGGCACAG 60.392 55.000 0.00 0.00 35.41 3.66
2589 2794 0.252761 ATGGATGTCATGTCGGCACA 59.747 50.000 0.00 0.00 34.22 4.57
2590 2795 1.867233 GTATGGATGTCATGTCGGCAC 59.133 52.381 0.00 0.00 37.30 5.01
2605 2817 9.117183 TGTATACAAGTGACAGTACTAGTATGG 57.883 37.037 5.75 4.17 0.00 2.74
2847 3069 9.553064 CATAGATGCAGTTAAGAGGAATAAGTT 57.447 33.333 0.00 0.00 0.00 2.66
2962 3184 1.610554 TTGGCTCCAGGGCGTACTAC 61.611 60.000 0.00 0.00 44.11 2.73
2975 3197 7.725818 AAACTAAGTAGTGTAAGTTTGGCTC 57.274 36.000 0.00 0.00 39.89 4.70
3101 3323 4.959210 AGCACACCTACAGTATCAAGATCT 59.041 41.667 0.00 0.00 0.00 2.75
3116 3338 1.415659 GGCAGATGATCTAGCACACCT 59.584 52.381 15.25 0.00 0.00 4.00
3257 3479 5.695816 GTGGCTGCAAAATTTCAGTAATTCA 59.304 36.000 0.50 0.00 35.39 2.57
3319 3541 6.067217 AGCATCCTACTTACCATTGAAAGT 57.933 37.500 8.71 8.71 39.25 2.66
3386 3610 7.568199 AACCACTCATATACAATGCCTAAAC 57.432 36.000 0.00 0.00 0.00 2.01
3417 3641 5.600908 AATGCATGAAACAAAGTCATTGC 57.399 34.783 0.00 0.00 43.13 3.56
3444 3668 1.346068 ACACTCTCCAGAGCAACCTTC 59.654 52.381 3.33 0.00 45.79 3.46
3486 3710 4.390603 TCAACAAGATTTATTGTCCCGTCG 59.609 41.667 0.00 0.00 42.49 5.12
3489 3713 5.621197 TGTCAACAAGATTTATTGTCCCG 57.379 39.130 0.00 0.00 42.49 5.14
3670 3897 4.083565 TGGATTTTACCTGGTTAGTTGCC 58.916 43.478 3.84 1.02 0.00 4.52
3690 3917 3.135348 TCAGCAACAGAGAAGGGATATGG 59.865 47.826 0.00 0.00 0.00 2.74
3732 3959 7.603735 TGTTATAAACAGGGGAGGAGATCCAG 61.604 46.154 0.92 0.00 42.74 3.86
3738 3965 4.941873 GTGTTGTTATAAACAGGGGAGGAG 59.058 45.833 0.00 0.00 43.27 3.69
3837 4069 4.122776 CCATTGTCTTCCTATTGTCTCCG 58.877 47.826 0.00 0.00 0.00 4.63
3895 4127 8.024865 CAGTTTTTATCAATCAAGCACTGATGA 58.975 33.333 2.38 3.70 44.43 2.92
3896 4128 7.811236 ACAGTTTTTATCAATCAAGCACTGATG 59.189 33.333 0.00 0.00 44.43 3.07
3935 4167 1.065854 GCTGACATGGCTGACCTAAGT 60.066 52.381 10.05 0.00 36.63 2.24
3942 4174 0.394762 GAATGGGCTGACATGGCTGA 60.395 55.000 10.05 0.00 0.00 4.26
4093 4332 9.791801 AAACATGCTTTTATGAGGGTTTTTATT 57.208 25.926 0.00 0.00 0.00 1.40
4122 4361 1.556911 GAGCTGATGAGGTTGAAGGGA 59.443 52.381 0.00 0.00 0.00 4.20
4388 4629 4.876107 AGCTAACATGGAAAACAGATACCG 59.124 41.667 0.00 0.00 0.00 4.02
4411 4652 0.389037 CAGAACGCTGTCAGCTGCTA 60.389 55.000 22.13 0.00 39.60 3.49
4433 4674 2.822764 CCGGAGGCTGTACAAGTTATC 58.177 52.381 0.00 0.00 46.14 1.75
4542 4783 9.782900 TGATATCCACACATCCCTATCTATAAA 57.217 33.333 0.00 0.00 0.00 1.40
4585 4830 8.895624 TCCTCCTGATAGTAGAGATTCTGATAA 58.104 37.037 0.00 0.00 0.00 1.75
4598 4843 8.150945 GCTAAATTCATTGTCCTCCTGATAGTA 58.849 37.037 0.00 0.00 0.00 1.82
4660 4905 5.334879 GCAACCCAGATAACAAAGTACACAG 60.335 44.000 0.00 0.00 0.00 3.66
4824 5070 4.910195 ACTAGGATGAACATGCAACTTGA 58.090 39.130 8.79 0.00 0.00 3.02
4825 5071 6.741992 TTACTAGGATGAACATGCAACTTG 57.258 37.500 8.79 0.00 0.00 3.16
4856 5102 6.260714 GCAATTACACACATACCTGATCATGA 59.739 38.462 4.88 0.00 0.00 3.07
4939 5186 9.880157 ATCAATGAAAAGGAAATGATCGAAATT 57.120 25.926 0.00 0.00 0.00 1.82
4977 5224 3.947196 TCAGAGCAAACTCAGCAAGAAAA 59.053 39.130 0.00 0.00 46.09 2.29
4985 5232 0.035881 TGGCCTCAGAGCAAACTCAG 59.964 55.000 3.32 0.00 46.09 3.35
5001 5248 3.189080 GGCCTGAAAACAAATCAAATGGC 59.811 43.478 0.00 0.00 35.83 4.40
5223 5470 4.904251 AGAATCTATGCATGGGTAGTGACT 59.096 41.667 10.16 0.00 0.00 3.41
5357 5608 3.187227 CCTGGTTTTGATTCACACGAGAG 59.813 47.826 8.13 0.00 0.00 3.20
5359 5610 2.878406 ACCTGGTTTTGATTCACACGAG 59.122 45.455 0.00 0.00 0.00 4.18
5362 5613 4.385358 AACACCTGGTTTTGATTCACAC 57.615 40.909 0.00 0.00 35.82 3.82
5437 5691 3.503363 GGCACGTCATCTGCAGCC 61.503 66.667 9.47 0.27 36.27 4.85
5567 5821 6.833933 CACTAGGTTGCCCTTTATAGGAAAAT 59.166 38.462 0.00 0.00 45.05 1.82
5568 5822 6.184789 CACTAGGTTGCCCTTTATAGGAAAA 58.815 40.000 0.00 0.00 45.05 2.29
5569 5823 5.751586 CACTAGGTTGCCCTTTATAGGAAA 58.248 41.667 0.00 0.00 45.05 3.13
5570 5824 4.384868 GCACTAGGTTGCCCTTTATAGGAA 60.385 45.833 0.00 0.00 42.66 3.36
5571 5825 3.135895 GCACTAGGTTGCCCTTTATAGGA 59.864 47.826 0.00 0.00 42.66 2.94
5572 5826 3.118038 TGCACTAGGTTGCCCTTTATAGG 60.118 47.826 3.12 0.00 42.66 2.57
5573 5827 4.150897 TGCACTAGGTTGCCCTTTATAG 57.849 45.455 3.12 0.00 42.66 1.31
5574 5828 4.080015 ACATGCACTAGGTTGCCCTTTATA 60.080 41.667 3.12 0.00 42.66 0.98
5575 5829 3.290710 CATGCACTAGGTTGCCCTTTAT 58.709 45.455 3.12 0.00 42.66 1.40
5576 5830 2.041081 ACATGCACTAGGTTGCCCTTTA 59.959 45.455 3.12 0.00 42.66 1.85
5577 5831 1.203050 ACATGCACTAGGTTGCCCTTT 60.203 47.619 3.12 0.00 42.66 3.11
5578 5832 0.405585 ACATGCACTAGGTTGCCCTT 59.594 50.000 3.12 0.00 42.66 3.95
5579 5833 1.210478 CTACATGCACTAGGTTGCCCT 59.790 52.381 3.12 0.00 45.51 5.19
5580 5834 1.668419 CTACATGCACTAGGTTGCCC 58.332 55.000 3.12 0.00 42.25 5.36
5581 5835 1.017387 GCTACATGCACTAGGTTGCC 58.983 55.000 3.12 0.00 42.25 4.52
5582 5836 1.936547 GAGCTACATGCACTAGGTTGC 59.063 52.381 6.44 7.05 45.94 4.17
5583 5837 2.555199 GGAGCTACATGCACTAGGTTG 58.445 52.381 6.44 0.00 45.94 3.77
5584 5838 1.486726 GGGAGCTACATGCACTAGGTT 59.513 52.381 0.00 0.00 45.94 3.50
5585 5839 1.123928 GGGAGCTACATGCACTAGGT 58.876 55.000 0.00 4.93 45.94 3.08
5586 5840 0.032678 CGGGAGCTACATGCACTAGG 59.967 60.000 0.00 0.00 45.94 3.02
5587 5841 3.577231 CGGGAGCTACATGCACTAG 57.423 57.895 0.00 0.00 45.94 2.57
5609 5863 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
5610 5864 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
5611 5865 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
5612 5866 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
5613 5867 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
5614 5868 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
5615 5869 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
5616 5870 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
5617 5871 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
5618 5872 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
5619 5873 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
5620 5874 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
5621 5875 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
5622 5876 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
5623 5877 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
5624 5878 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
5625 5879 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
5626 5880 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
5627 5881 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
5628 5882 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
5633 5887 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
5634 5888 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
5635 5889 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
5636 5890 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
5637 5891 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
5638 5892 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
5639 5893 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
5640 5894 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
5641 5895 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
5642 5896 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
5643 5897 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
5644 5898 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
5645 5899 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
5646 5900 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
5647 5901 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
5648 5902 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
5649 5903 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
5650 5904 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
5651 5905 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
5652 5906 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
5653 5907 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
5654 5908 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
5655 5909 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
5656 5910 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
5657 5911 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
5658 5912 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
5659 5913 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
5660 5914 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
5661 5915 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
5662 5916 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
5663 5917 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
5664 5918 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
5665 5919 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
5666 5920 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
5667 5921 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
5668 5922 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
5669 5923 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
5670 5924 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
5684 5938 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
5685 5939 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
5686 5940 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
5687 5941 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
5688 5942 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
5689 5943 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
5690 5944 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
5691 5945 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
5692 5946 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
5693 5947 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
5708 5962 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
5709 5963 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
5710 5964 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
5711 5965 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
5712 5966 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
5713 5967 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
5714 5968 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
5715 5969 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
5716 5970 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
5717 5971 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
5718 5972 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
5719 5973 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
5720 5974 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
5721 5975 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
5722 5976 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
5727 5981 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
5728 5982 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
5729 5983 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
5730 5984 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
5731 5985 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
5732 5986 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
5733 5987 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
5741 5995 3.350031 ATGAAGGGGAGCCTTGGCG 62.350 63.158 5.95 0.00 0.00 5.69
5742 5996 1.755783 CATGAAGGGGAGCCTTGGC 60.756 63.158 2.97 2.97 0.00 4.52
5743 5997 0.554792 ATCATGAAGGGGAGCCTTGG 59.445 55.000 0.00 0.00 0.00 3.61
5744 5998 2.173356 TGTATCATGAAGGGGAGCCTTG 59.827 50.000 0.00 0.00 0.00 3.61
5745 5999 2.492025 TGTATCATGAAGGGGAGCCTT 58.508 47.619 0.00 0.00 0.00 4.35
5746 6000 2.196742 TGTATCATGAAGGGGAGCCT 57.803 50.000 0.00 0.00 0.00 4.58
5747 6001 3.515602 AATGTATCATGAAGGGGAGCC 57.484 47.619 0.00 0.00 0.00 4.70
5748 6002 4.279420 GGAAAATGTATCATGAAGGGGAGC 59.721 45.833 0.00 0.00 0.00 4.70
5749 6003 5.699143 AGGAAAATGTATCATGAAGGGGAG 58.301 41.667 0.00 0.00 0.00 4.30
5750 6004 5.732331 AGGAAAATGTATCATGAAGGGGA 57.268 39.130 0.00 0.00 0.00 4.81
5751 6005 8.605947 TCTATAGGAAAATGTATCATGAAGGGG 58.394 37.037 0.00 0.00 0.00 4.79
5758 6012 9.797642 TGTTGCATCTATAGGAAAATGTATCAT 57.202 29.630 0.00 0.00 0.00 2.45
5759 6013 9.625747 TTGTTGCATCTATAGGAAAATGTATCA 57.374 29.630 0.00 0.00 0.00 2.15
5790 6044 1.487976 GGATGATCAGCAAGACAGGGA 59.512 52.381 13.85 0.00 0.00 4.20
5808 6062 7.086685 AGTTTAGTATGACCAAAGGAAAGGA 57.913 36.000 0.00 0.00 0.00 3.36
5809 6063 7.447238 TCAAGTTTAGTATGACCAAAGGAAAGG 59.553 37.037 0.00 0.00 0.00 3.11
5810 6064 8.290325 GTCAAGTTTAGTATGACCAAAGGAAAG 58.710 37.037 0.00 0.00 37.97 2.62
5811 6065 7.996644 AGTCAAGTTTAGTATGACCAAAGGAAA 59.003 33.333 1.81 0.00 43.46 3.13
5812 6066 7.514721 AGTCAAGTTTAGTATGACCAAAGGAA 58.485 34.615 1.81 0.00 43.46 3.36
5838 6092 1.109323 GTCCACCAGCCTGCAAAAGT 61.109 55.000 0.00 0.00 0.00 2.66
5922 6176 0.104356 TGGTCTCCCAGGGGTTGTAA 60.104 55.000 5.33 0.00 35.17 2.41
6021 6275 1.379443 CATCTGCACAGCATGGGGT 60.379 57.895 0.00 0.00 42.43 4.95
6204 6458 1.077285 CATCATCCCAGTGCCAGCA 60.077 57.895 0.00 0.00 0.00 4.41
6275 6529 5.284079 CAGAACAAAGTTTTCATCTGTGGG 58.716 41.667 11.36 0.00 30.83 4.61
6276 6530 4.741676 GCAGAACAAAGTTTTCATCTGTGG 59.258 41.667 17.08 1.39 34.68 4.17
6300 6554 4.309099 GCAGCCAAGAAAAATGAACATGA 58.691 39.130 0.00 0.00 0.00 3.07
6377 6635 0.608640 CTACACTCCTTTGCTCCCGT 59.391 55.000 0.00 0.00 0.00 5.28
6496 6754 5.076878 ACATCCATGAATAATCCAATCCCCT 59.923 40.000 0.00 0.00 0.00 4.79
6645 6912 9.970395 AATGCATCAACATATTCGTCATAATTT 57.030 25.926 0.00 0.00 0.00 1.82
6648 6915 8.404765 ACAAATGCATCAACATATTCGTCATAA 58.595 29.630 0.00 0.00 0.00 1.90
6650 6917 6.693978 CACAAATGCATCAACATATTCGTCAT 59.306 34.615 0.00 0.00 0.00 3.06
6651 6918 6.028987 CACAAATGCATCAACATATTCGTCA 58.971 36.000 0.00 0.00 0.00 4.35
6652 6919 5.456497 CCACAAATGCATCAACATATTCGTC 59.544 40.000 0.00 0.00 0.00 4.20
6667 6936 3.184541 CTGCTAGCAAATCCACAAATGC 58.815 45.455 19.86 0.00 39.06 3.56
6745 7014 5.050227 ACAAAATCAATCCAATGTTGCAACG 60.050 36.000 23.79 10.24 0.00 4.10
6834 7105 6.436843 TGTGAGTCTTCAAAGAAAGAAACC 57.563 37.500 0.00 0.00 37.04 3.27
6835 7106 7.483059 CAGTTGTGAGTCTTCAAAGAAAGAAAC 59.517 37.037 0.00 0.00 37.04 2.78
6839 7110 6.428385 ACAGTTGTGAGTCTTCAAAGAAAG 57.572 37.500 0.00 0.00 36.68 2.62
6897 7168 9.715121 ACAAATCAATCTTGCAAAAGAATGTAT 57.285 25.926 0.00 0.00 32.83 2.29
6898 7169 9.195411 GACAAATCAATCTTGCAAAAGAATGTA 57.805 29.630 0.00 0.00 32.83 2.29
6899 7170 7.929785 AGACAAATCAATCTTGCAAAAGAATGT 59.070 29.630 0.00 6.19 32.83 2.71
6900 7171 8.306680 AGACAAATCAATCTTGCAAAAGAATG 57.693 30.769 0.00 0.00 32.39 2.67
6901 7172 7.327761 CGAGACAAATCAATCTTGCAAAAGAAT 59.672 33.333 0.00 0.00 31.77 2.40
6902 7173 6.638063 CGAGACAAATCAATCTTGCAAAAGAA 59.362 34.615 0.00 0.00 31.77 2.52
6903 7174 6.144854 CGAGACAAATCAATCTTGCAAAAGA 58.855 36.000 0.00 0.00 0.00 2.52
6904 7175 5.916883 ACGAGACAAATCAATCTTGCAAAAG 59.083 36.000 0.00 0.00 30.45 2.27
6933 7205 5.339008 TCGAAGTGCAGGTTAATACTCAT 57.661 39.130 0.00 0.00 0.00 2.90
6957 7232 9.554395 TTGTTGTGAACATCAAAGATAGTTAGA 57.446 29.630 4.80 0.00 41.79 2.10
7065 7371 7.309920 AGTTTTCTGTTTGACGTATTTGTGTT 58.690 30.769 0.00 0.00 0.00 3.32
7067 7373 6.964370 TGAGTTTTCTGTTTGACGTATTTGTG 59.036 34.615 0.00 0.00 0.00 3.33
7069 7375 8.070171 AGATGAGTTTTCTGTTTGACGTATTTG 58.930 33.333 0.00 0.00 0.00 2.32
7073 7379 8.651391 TTAAGATGAGTTTTCTGTTTGACGTA 57.349 30.769 0.00 0.00 0.00 3.57
7272 7652 0.104672 TGGTGGAGAGGAAAGGTGGA 60.105 55.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.