Multiple sequence alignment - TraesCS7B01G040200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G040200 chr7B 100.000 3190 0 0 1 3190 40288760 40285571 0.000000e+00 5891.0
1 TraesCS7B01G040200 chr7B 87.682 755 82 4 1448 2198 608301249 608300502 0.000000e+00 869.0
2 TraesCS7B01G040200 chr7A 93.894 1343 44 9 945 2262 90481590 90480261 0.000000e+00 1991.0
3 TraesCS7B01G040200 chr7A 87.270 762 76 10 1448 2195 644526990 644526236 0.000000e+00 850.0
4 TraesCS7B01G040200 chr7A 82.036 668 55 24 2276 2899 90480088 90479442 2.840000e-140 508.0
5 TraesCS7B01G040200 chr7A 89.373 367 15 12 57 416 90483070 90482721 1.050000e-119 440.0
6 TraesCS7B01G040200 chr3D 92.287 752 49 5 1448 2190 5862577 5863328 0.000000e+00 1059.0
7 TraesCS7B01G040200 chr3D 85.321 763 103 5 1448 2204 5813297 5812538 0.000000e+00 780.0
8 TraesCS7B01G040200 chr3D 77.213 610 66 44 841 1397 5861832 5862421 4.030000e-74 289.0
9 TraesCS7B01G040200 chrUn 91.099 764 52 6 1447 2195 40584283 40583521 0.000000e+00 1020.0
10 TraesCS7B01G040200 chrUn 79.508 366 45 22 994 1340 40584708 40584354 1.910000e-57 233.0
11 TraesCS7B01G040200 chrUn 81.215 181 22 11 2638 2809 419490354 419490177 5.550000e-28 135.0
12 TraesCS7B01G040200 chrUn 89.796 49 5 0 2523 2571 32298437 32298389 2.660000e-06 63.9
13 TraesCS7B01G040200 chrUn 89.796 49 5 0 2523 2571 267484014 267484062 2.660000e-06 63.9
14 TraesCS7B01G040200 chr3B 89.961 767 58 6 1460 2207 11660042 11659276 0.000000e+00 972.0
15 TraesCS7B01G040200 chr3B 83.008 359 38 22 994 1340 11660460 11660113 1.440000e-78 303.0
16 TraesCS7B01G040200 chr3B 86.220 254 18 9 131 373 720221072 720220825 3.160000e-65 259.0
17 TraesCS7B01G040200 chr3B 89.011 91 8 1 2387 2475 11957260 11957170 9.350000e-21 111.0
18 TraesCS7B01G040200 chr3A 89.384 763 58 13 1451 2190 15303573 15302811 0.000000e+00 939.0
19 TraesCS7B01G040200 chr3A 79.457 516 57 32 853 1335 11640244 11640743 1.430000e-83 320.0
20 TraesCS7B01G040200 chr3A 87.793 213 14 7 131 336 681345162 681344955 4.110000e-59 239.0
21 TraesCS7B01G040200 chr3A 89.796 49 5 0 2523 2571 12173550 12173502 2.660000e-06 63.9
22 TraesCS7B01G040200 chr7D 87.270 762 79 8 1448 2198 560286678 560285924 0.000000e+00 854.0
23 TraesCS7B01G040200 chr7D 94.643 56 2 1 114 169 585375409 585375463 5.670000e-13 86.1
24 TraesCS7B01G040200 chr7D 83.333 66 6 5 2456 2517 78171575 78171511 4.450000e-04 56.5
25 TraesCS7B01G040200 chr5A 89.825 285 12 6 102 377 404636530 404636254 1.820000e-92 350.0
26 TraesCS7B01G040200 chr5D 86.926 283 14 6 102 377 311377905 311377639 2.410000e-76 296.0
27 TraesCS7B01G040200 chr5D 87.342 237 22 6 147 377 419294578 419294344 6.790000e-67 265.0
28 TraesCS7B01G040200 chr6D 87.547 265 20 10 121 373 357724252 357724515 8.650000e-76 294.0
29 TraesCS7B01G040200 chr6D 92.857 56 3 1 114 169 372039687 372039741 2.640000e-11 80.5
30 TraesCS7B01G040200 chr6D 84.906 53 6 2 2463 2514 142147532 142147583 6.000000e-03 52.8
31 TraesCS7B01G040200 chr6D 94.286 35 1 1 2487 2520 266382176 266382142 6.000000e-03 52.8
32 TraesCS7B01G040200 chr1D 79.827 347 44 17 994 1335 394274444 394274769 2.480000e-56 230.0
33 TraesCS7B01G040200 chr1D 88.889 90 10 0 2382 2471 394276357 394276446 9.350000e-21 111.0
34 TraesCS7B01G040200 chr4D 95.238 105 4 1 1119 1223 444094166 444094269 7.080000e-37 165.0
35 TraesCS7B01G040200 chr4D 85.870 92 6 3 2384 2471 42123009 42122921 1.220000e-14 91.6
36 TraesCS7B01G040200 chr4D 90.196 51 5 0 2521 2571 372833897 372833847 2.050000e-07 67.6
37 TraesCS7B01G040200 chr4D 90.196 51 5 0 2521 2571 372835159 372835109 2.050000e-07 67.6
38 TraesCS7B01G040200 chr5B 93.578 109 6 1 1119 1227 521345883 521345990 9.160000e-36 161.0
39 TraesCS7B01G040200 chr5B 93.519 108 6 1 1120 1227 567942359 567942465 3.290000e-35 159.0
40 TraesCS7B01G040200 chr1B 94.286 105 5 1 1123 1227 625436684 625436581 3.290000e-35 159.0
41 TraesCS7B01G040200 chr1B 91.176 102 7 1 183 282 606496010 606495909 1.540000e-28 137.0
42 TraesCS7B01G040200 chr4B 94.805 77 3 1 119 195 329152188 329152263 5.590000e-23 119.0
43 TraesCS7B01G040200 chr4B 86.792 53 7 0 567 619 329152811 329152759 3.440000e-05 60.2
44 TraesCS7B01G040200 chr4A 86.957 92 8 1 2384 2471 597112312 597112221 2.020000e-17 100.0
45 TraesCS7B01G040200 chr4A 91.667 48 3 1 565 612 665862626 665862580 7.390000e-07 65.8
46 TraesCS7B01G040200 chr6A 82.796 93 14 2 551 642 377541414 377541505 7.330000e-12 82.4
47 TraesCS7B01G040200 chr2B 96.970 33 1 0 2482 2514 512623542 512623574 4.450000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G040200 chr7B 40285571 40288760 3189 True 5891.000000 5891 100.000000 1 3190 1 chr7B.!!$R1 3189
1 TraesCS7B01G040200 chr7B 608300502 608301249 747 True 869.000000 869 87.682000 1448 2198 1 chr7B.!!$R2 750
2 TraesCS7B01G040200 chr7A 90479442 90483070 3628 True 979.666667 1991 88.434333 57 2899 3 chr7A.!!$R2 2842
3 TraesCS7B01G040200 chr7A 644526236 644526990 754 True 850.000000 850 87.270000 1448 2195 1 chr7A.!!$R1 747
4 TraesCS7B01G040200 chr3D 5812538 5813297 759 True 780.000000 780 85.321000 1448 2204 1 chr3D.!!$R1 756
5 TraesCS7B01G040200 chr3D 5861832 5863328 1496 False 674.000000 1059 84.750000 841 2190 2 chr3D.!!$F1 1349
6 TraesCS7B01G040200 chrUn 40583521 40584708 1187 True 626.500000 1020 85.303500 994 2195 2 chrUn.!!$R3 1201
7 TraesCS7B01G040200 chr3B 11659276 11660460 1184 True 637.500000 972 86.484500 994 2207 2 chr3B.!!$R3 1213
8 TraesCS7B01G040200 chr3A 15302811 15303573 762 True 939.000000 939 89.384000 1451 2190 1 chr3A.!!$R2 739
9 TraesCS7B01G040200 chr7D 560285924 560286678 754 True 854.000000 854 87.270000 1448 2198 1 chr7D.!!$R2 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
685 1314 0.249447 TGAACGCCAGAGACACTGTG 60.249 55.0 6.19 6.19 44.4 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2632 3807 0.251297 TCTGGGCATGGACAACCTTG 60.251 55.0 0.0 0.0 42.12 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.870706 TCAACATTACTACATCCACAACCA 58.129 37.500 0.00 0.00 0.00 3.67
24 25 6.480763 TCAACATTACTACATCCACAACCAT 58.519 36.000 0.00 0.00 0.00 3.55
25 26 6.945435 TCAACATTACTACATCCACAACCATT 59.055 34.615 0.00 0.00 0.00 3.16
26 27 7.120579 TCAACATTACTACATCCACAACCATTC 59.879 37.037 0.00 0.00 0.00 2.67
27 28 6.480763 ACATTACTACATCCACAACCATTCA 58.519 36.000 0.00 0.00 0.00 2.57
28 29 7.118723 ACATTACTACATCCACAACCATTCAT 58.881 34.615 0.00 0.00 0.00 2.57
29 30 7.283127 ACATTACTACATCCACAACCATTCATC 59.717 37.037 0.00 0.00 0.00 2.92
30 31 5.178096 ACTACATCCACAACCATTCATCA 57.822 39.130 0.00 0.00 0.00 3.07
31 32 5.569355 ACTACATCCACAACCATTCATCAA 58.431 37.500 0.00 0.00 0.00 2.57
32 33 4.789012 ACATCCACAACCATTCATCAAC 57.211 40.909 0.00 0.00 0.00 3.18
33 34 4.151121 ACATCCACAACCATTCATCAACA 58.849 39.130 0.00 0.00 0.00 3.33
34 35 4.773674 ACATCCACAACCATTCATCAACAT 59.226 37.500 0.00 0.00 0.00 2.71
35 36 5.246656 ACATCCACAACCATTCATCAACATT 59.753 36.000 0.00 0.00 0.00 2.71
36 37 6.436847 ACATCCACAACCATTCATCAACATTA 59.563 34.615 0.00 0.00 0.00 1.90
37 38 6.266168 TCCACAACCATTCATCAACATTAC 57.734 37.500 0.00 0.00 0.00 1.89
38 39 6.009589 TCCACAACCATTCATCAACATTACT 58.990 36.000 0.00 0.00 0.00 2.24
39 40 7.171653 TCCACAACCATTCATCAACATTACTA 58.828 34.615 0.00 0.00 0.00 1.82
40 41 7.120579 TCCACAACCATTCATCAACATTACTAC 59.879 37.037 0.00 0.00 0.00 2.73
41 42 7.094420 CCACAACCATTCATCAACATTACTACA 60.094 37.037 0.00 0.00 0.00 2.74
42 43 8.461222 CACAACCATTCATCAACATTACTACAT 58.539 33.333 0.00 0.00 0.00 2.29
43 44 8.677300 ACAACCATTCATCAACATTACTACATC 58.323 33.333 0.00 0.00 0.00 3.06
44 45 8.676401 CAACCATTCATCAACATTACTACATCA 58.324 33.333 0.00 0.00 0.00 3.07
45 46 8.806429 ACCATTCATCAACATTACTACATCAA 57.194 30.769 0.00 0.00 0.00 2.57
46 47 8.677300 ACCATTCATCAACATTACTACATCAAC 58.323 33.333 0.00 0.00 0.00 3.18
47 48 8.676401 CCATTCATCAACATTACTACATCAACA 58.324 33.333 0.00 0.00 0.00 3.33
50 51 8.039603 TCATCAACATTACTACATCAACAACC 57.960 34.615 0.00 0.00 0.00 3.77
51 52 7.663493 TCATCAACATTACTACATCAACAACCA 59.337 33.333 0.00 0.00 0.00 3.67
52 53 7.994425 TCAACATTACTACATCAACAACCAT 57.006 32.000 0.00 0.00 0.00 3.55
53 54 8.402798 TCAACATTACTACATCAACAACCATT 57.597 30.769 0.00 0.00 0.00 3.16
54 55 8.296000 TCAACATTACTACATCAACAACCATTG 58.704 33.333 0.00 0.00 0.00 2.82
55 56 7.156876 ACATTACTACATCAACAACCATTGG 57.843 36.000 0.00 0.00 34.12 3.16
100 101 9.764363 TCTAAATATATGTCTCCACACATTCAC 57.236 33.333 0.00 0.00 38.07 3.18
101 102 7.807977 AAATATATGTCTCCACACATTCACC 57.192 36.000 0.00 0.00 38.07 4.02
102 103 4.842531 ATATGTCTCCACACATTCACCA 57.157 40.909 0.00 0.00 38.07 4.17
103 104 3.726557 ATGTCTCCACACATTCACCAT 57.273 42.857 0.00 0.00 32.81 3.55
104 105 3.057969 TGTCTCCACACATTCACCATC 57.942 47.619 0.00 0.00 0.00 3.51
107 108 2.086869 CTCCACACATTCACCATCCAC 58.913 52.381 0.00 0.00 0.00 4.02
117 118 6.153340 CACATTCACCATCCACCTTTCTAAAT 59.847 38.462 0.00 0.00 0.00 1.40
204 210 6.296662 GGTTCATCCACACATCCATATATCCT 60.297 42.308 0.00 0.00 35.97 3.24
225 231 5.647658 TCCTTCCATTGATACACACATCAAC 59.352 40.000 0.90 0.00 45.22 3.18
292 299 4.287766 GGGTTCACCTATATCCATCCAC 57.712 50.000 0.00 0.00 35.85 4.02
293 300 3.650942 GGGTTCACCTATATCCATCCACA 59.349 47.826 0.00 0.00 35.85 4.17
294 301 4.505039 GGGTTCACCTATATCCATCCACAC 60.505 50.000 0.00 0.00 35.85 3.82
295 302 4.102524 GGTTCACCTATATCCATCCACACA 59.897 45.833 0.00 0.00 0.00 3.72
296 303 5.221925 GGTTCACCTATATCCATCCACACAT 60.222 44.000 0.00 0.00 0.00 3.21
297 304 5.745312 TCACCTATATCCATCCACACATC 57.255 43.478 0.00 0.00 0.00 3.06
298 305 4.532126 TCACCTATATCCATCCACACATCC 59.468 45.833 0.00 0.00 0.00 3.51
299 306 4.286808 CACCTATATCCATCCACACATCCA 59.713 45.833 0.00 0.00 0.00 3.41
300 307 4.287067 ACCTATATCCATCCACACATCCAC 59.713 45.833 0.00 0.00 0.00 4.02
301 308 4.286808 CCTATATCCATCCACACATCCACA 59.713 45.833 0.00 0.00 0.00 4.17
302 309 2.425143 ATCCATCCACACATCCACAC 57.575 50.000 0.00 0.00 0.00 3.82
303 310 1.063183 TCCATCCACACATCCACACA 58.937 50.000 0.00 0.00 0.00 3.72
304 311 1.634973 TCCATCCACACATCCACACAT 59.365 47.619 0.00 0.00 0.00 3.21
305 312 2.019249 CCATCCACACATCCACACATC 58.981 52.381 0.00 0.00 0.00 3.06
306 313 2.019249 CATCCACACATCCACACATCC 58.981 52.381 0.00 0.00 0.00 3.51
307 314 1.063183 TCCACACATCCACACATCCA 58.937 50.000 0.00 0.00 0.00 3.41
308 315 1.167851 CCACACATCCACACATCCAC 58.832 55.000 0.00 0.00 0.00 4.02
309 316 1.545204 CCACACATCCACACATCCACA 60.545 52.381 0.00 0.00 0.00 4.17
310 317 1.536766 CACACATCCACACATCCACAC 59.463 52.381 0.00 0.00 0.00 3.82
311 318 1.142667 ACACATCCACACATCCACACA 59.857 47.619 0.00 0.00 0.00 3.72
312 319 2.224843 ACACATCCACACATCCACACAT 60.225 45.455 0.00 0.00 0.00 3.21
313 320 2.421073 CACATCCACACATCCACACATC 59.579 50.000 0.00 0.00 0.00 3.06
314 321 2.019249 CATCCACACATCCACACATCC 58.981 52.381 0.00 0.00 0.00 3.51
315 322 1.063183 TCCACACATCCACACATCCA 58.937 50.000 0.00 0.00 0.00 3.41
316 323 1.423161 TCCACACATCCACACATCCAA 59.577 47.619 0.00 0.00 0.00 3.53
317 324 1.541147 CCACACATCCACACATCCAAC 59.459 52.381 0.00 0.00 0.00 3.77
318 325 2.228925 CACACATCCACACATCCAACA 58.771 47.619 0.00 0.00 0.00 3.33
319 326 2.821378 CACACATCCACACATCCAACAT 59.179 45.455 0.00 0.00 0.00 2.71
320 327 4.009002 CACACATCCACACATCCAACATA 58.991 43.478 0.00 0.00 0.00 2.29
321 328 4.641541 CACACATCCACACATCCAACATAT 59.358 41.667 0.00 0.00 0.00 1.78
322 329 5.821995 CACACATCCACACATCCAACATATA 59.178 40.000 0.00 0.00 0.00 0.86
323 330 6.487668 CACACATCCACACATCCAACATATAT 59.512 38.462 0.00 0.00 0.00 0.86
324 331 6.712095 ACACATCCACACATCCAACATATATC 59.288 38.462 0.00 0.00 0.00 1.63
325 332 6.149973 CACATCCACACATCCAACATATATCC 59.850 42.308 0.00 0.00 0.00 2.59
326 333 5.903198 TCCACACATCCAACATATATCCA 57.097 39.130 0.00 0.00 0.00 3.41
327 334 6.452757 TCCACACATCCAACATATATCCAT 57.547 37.500 0.00 0.00 0.00 3.41
328 335 6.475504 TCCACACATCCAACATATATCCATC 58.524 40.000 0.00 0.00 0.00 3.51
329 336 5.649395 CCACACATCCAACATATATCCATCC 59.351 44.000 0.00 0.00 0.00 3.51
330 337 6.240145 CACACATCCAACATATATCCATCCA 58.760 40.000 0.00 0.00 0.00 3.41
331 338 6.888088 CACACATCCAACATATATCCATCCAT 59.112 38.462 0.00 0.00 0.00 3.41
332 339 7.395206 CACACATCCAACATATATCCATCCATT 59.605 37.037 0.00 0.00 0.00 3.16
333 340 7.613022 ACACATCCAACATATATCCATCCATTC 59.387 37.037 0.00 0.00 0.00 2.67
334 341 7.612633 CACATCCAACATATATCCATCCATTCA 59.387 37.037 0.00 0.00 0.00 2.57
335 342 8.341513 ACATCCAACATATATCCATCCATTCAT 58.658 33.333 0.00 0.00 0.00 2.57
336 343 8.847196 CATCCAACATATATCCATCCATTCATC 58.153 37.037 0.00 0.00 0.00 2.92
337 344 7.931046 TCCAACATATATCCATCCATTCATCA 58.069 34.615 0.00 0.00 0.00 3.07
338 345 7.830697 TCCAACATATATCCATCCATTCATCAC 59.169 37.037 0.00 0.00 0.00 3.06
339 346 7.612633 CCAACATATATCCATCCATTCATCACA 59.387 37.037 0.00 0.00 0.00 3.58
340 347 8.456471 CAACATATATCCATCCATTCATCACAC 58.544 37.037 0.00 0.00 0.00 3.82
341 348 7.692172 ACATATATCCATCCATTCATCACACA 58.308 34.615 0.00 0.00 0.00 3.72
342 349 8.333984 ACATATATCCATCCATTCATCACACAT 58.666 33.333 0.00 0.00 0.00 3.21
343 350 9.185680 CATATATCCATCCATTCATCACACATT 57.814 33.333 0.00 0.00 0.00 2.71
344 351 7.698506 ATATCCATCCATTCATCACACATTC 57.301 36.000 0.00 0.00 0.00 2.67
345 352 4.857679 TCCATCCATTCATCACACATTCA 58.142 39.130 0.00 0.00 0.00 2.57
346 353 5.451354 TCCATCCATTCATCACACATTCAT 58.549 37.500 0.00 0.00 0.00 2.57
347 354 6.603224 TCCATCCATTCATCACACATTCATA 58.397 36.000 0.00 0.00 0.00 2.15
348 355 7.235804 TCCATCCATTCATCACACATTCATAT 58.764 34.615 0.00 0.00 0.00 1.78
349 356 8.384718 TCCATCCATTCATCACACATTCATATA 58.615 33.333 0.00 0.00 0.00 0.86
350 357 9.185680 CCATCCATTCATCACACATTCATATAT 57.814 33.333 0.00 0.00 0.00 0.86
352 359 8.797350 TCCATTCATCACACATTCATATATCC 57.203 34.615 0.00 0.00 0.00 2.59
353 360 8.384718 TCCATTCATCACACATTCATATATCCA 58.615 33.333 0.00 0.00 0.00 3.41
354 361 9.016438 CCATTCATCACACATTCATATATCCAA 57.984 33.333 0.00 0.00 0.00 3.53
355 362 9.836076 CATTCATCACACATTCATATATCCAAC 57.164 33.333 0.00 0.00 0.00 3.77
356 363 8.977267 TTCATCACACATTCATATATCCAACA 57.023 30.769 0.00 0.00 0.00 3.33
357 364 9.577222 TTCATCACACATTCATATATCCAACAT 57.423 29.630 0.00 0.00 0.00 2.71
380 387 8.165397 ACATATATTCATCCATTCATCCACACA 58.835 33.333 0.00 0.00 0.00 3.72
381 388 9.185680 CATATATTCATCCATTCATCCACACAT 57.814 33.333 0.00 0.00 0.00 3.21
382 389 9.763837 ATATATTCATCCATTCATCCACACATT 57.236 29.630 0.00 0.00 0.00 2.71
383 390 5.840243 TTCATCCATTCATCCACACATTC 57.160 39.130 0.00 0.00 0.00 2.67
384 391 4.857679 TCATCCATTCATCCACACATTCA 58.142 39.130 0.00 0.00 0.00 2.57
385 392 5.451354 TCATCCATTCATCCACACATTCAT 58.549 37.500 0.00 0.00 0.00 2.57
386 393 6.603224 TCATCCATTCATCCACACATTCATA 58.397 36.000 0.00 0.00 0.00 2.15
387 394 7.235804 TCATCCATTCATCCACACATTCATAT 58.764 34.615 0.00 0.00 0.00 1.78
427 434 7.612633 CCATCCATTCATCCACACATTCATATA 59.387 37.037 0.00 0.00 0.00 0.86
430 437 7.830697 TCCATTCATCCACACATTCATATATCC 59.169 37.037 0.00 0.00 0.00 2.59
434 441 7.516452 TCATCCACACATTCATATATCCAACA 58.484 34.615 0.00 0.00 0.00 3.33
435 442 8.165397 TCATCCACACATTCATATATCCAACAT 58.835 33.333 0.00 0.00 0.00 2.71
495 502 9.197306 CAACATATATCCATCCATTCATCCAAT 57.803 33.333 0.00 0.00 0.00 3.16
501 508 6.729690 TCCATCCATTCATCCAATTAAACC 57.270 37.500 0.00 0.00 0.00 3.27
502 509 5.602145 TCCATCCATTCATCCAATTAAACCC 59.398 40.000 0.00 0.00 0.00 4.11
505 1090 3.069443 CCATTCATCCAATTAAACCCCCG 59.931 47.826 0.00 0.00 0.00 5.73
518 1133 1.069258 CCCCCGCTCTATTTCGGTC 59.931 63.158 0.00 0.00 43.87 4.79
570 1187 5.391629 CCTTTAACTGTTCAAACCCTATCGC 60.392 44.000 0.00 0.00 0.00 4.58
574 1191 1.626321 TGTTCAAACCCTATCGCCAGA 59.374 47.619 0.00 0.00 0.00 3.86
598 1215 3.070446 TCAATGGCGGTAGGGTATAACTG 59.930 47.826 0.00 0.00 0.00 3.16
603 1220 2.830321 GCGGTAGGGTATAACTGCCTAT 59.170 50.000 9.93 0.00 41.25 2.57
605 1222 3.128242 CGGTAGGGTATAACTGCCTATCG 59.872 52.174 0.00 0.00 38.41 2.92
606 1223 3.119209 GGTAGGGTATAACTGCCTATCGC 60.119 52.174 5.81 0.00 37.68 4.58
616 1233 3.314331 CCTATCGCCGAGGCCCAT 61.314 66.667 8.72 3.64 37.98 4.00
617 1234 2.047844 CTATCGCCGAGGCCCATG 60.048 66.667 8.72 0.00 37.98 3.66
618 1235 3.596066 CTATCGCCGAGGCCCATGG 62.596 68.421 4.14 4.14 37.98 3.66
634 1251 1.331756 CATGGCAGTAAGATTGACGGC 59.668 52.381 0.00 0.00 37.29 5.68
637 1254 1.405526 GGCAGTAAGATTGACGGCAGA 60.406 52.381 0.00 0.00 39.43 4.26
640 1257 1.134670 AGTAAGATTGACGGCAGAGGC 60.135 52.381 0.00 0.00 40.13 4.70
655 1272 3.752339 GGCGGACGGGTCGTTACT 61.752 66.667 0.00 0.00 41.37 2.24
657 1274 2.981560 GCGGACGGGTCGTTACTGA 61.982 63.158 0.00 0.00 41.37 3.41
659 1276 1.855213 CGGACGGGTCGTTACTGACA 61.855 60.000 8.87 0.00 41.37 3.58
664 1281 1.665161 CGGGTCGTTACTGACACTGAC 60.665 57.143 7.66 0.00 40.20 3.51
665 1282 1.338973 GGGTCGTTACTGACACTGACA 59.661 52.381 8.87 0.00 39.25 3.58
668 1285 3.305131 GGTCGTTACTGACACTGACATGA 60.305 47.826 0.00 0.00 40.72 3.07
673 1302 0.792640 CTGACACTGACATGAACGCC 59.207 55.000 0.00 0.00 0.00 5.68
680 1309 0.678950 TGACATGAACGCCAGAGACA 59.321 50.000 0.00 0.00 0.00 3.41
684 1313 0.681733 ATGAACGCCAGAGACACTGT 59.318 50.000 0.00 0.00 44.40 3.55
685 1314 0.249447 TGAACGCCAGAGACACTGTG 60.249 55.000 6.19 6.19 44.40 3.66
703 1333 3.174779 TGTGGTAGGTGGTGTTATGCTA 58.825 45.455 0.00 0.00 0.00 3.49
704 1334 3.778075 TGTGGTAGGTGGTGTTATGCTAT 59.222 43.478 0.00 0.00 0.00 2.97
707 1337 3.069158 GGTAGGTGGTGTTATGCTATCGT 59.931 47.826 0.00 0.00 0.00 3.73
710 1340 2.124903 GTGGTGTTATGCTATCGTCGG 58.875 52.381 0.00 0.00 0.00 4.79
715 1345 1.338973 GTTATGCTATCGTCGGGGTGA 59.661 52.381 0.00 0.00 0.00 4.02
716 1346 0.956633 TATGCTATCGTCGGGGTGAC 59.043 55.000 0.00 0.00 44.53 3.67
719 1349 1.381928 GCTATCGTCGGGGTGACTGA 61.382 60.000 0.00 0.00 45.87 3.41
768 1401 1.847818 TAAGTGGCGTCATATCGTGC 58.152 50.000 0.00 0.00 0.00 5.34
809 1442 1.995376 AGAACGGTGAATTTGGCCTT 58.005 45.000 3.32 0.00 0.00 4.35
811 1444 2.698274 AGAACGGTGAATTTGGCCTTTT 59.302 40.909 3.32 0.00 0.00 2.27
812 1445 2.812358 ACGGTGAATTTGGCCTTTTC 57.188 45.000 3.32 5.11 0.00 2.29
813 1446 2.316108 ACGGTGAATTTGGCCTTTTCT 58.684 42.857 3.32 0.00 0.00 2.52
814 1447 2.698274 ACGGTGAATTTGGCCTTTTCTT 59.302 40.909 3.32 0.00 0.00 2.52
815 1448 3.059166 CGGTGAATTTGGCCTTTTCTTG 58.941 45.455 3.32 0.00 0.00 3.02
820 1453 6.045955 GTGAATTTGGCCTTTTCTTGTAACA 58.954 36.000 3.32 0.00 0.00 2.41
825 1458 5.452078 TGGCCTTTTCTTGTAACATTCTG 57.548 39.130 3.32 0.00 0.00 3.02
834 1467 6.882610 TCTTGTAACATTCTGCTGTTTGAT 57.117 33.333 0.00 0.00 39.88 2.57
858 1491 4.030216 AGTCAAAGGGAAAAAGCAAGGAA 58.970 39.130 0.00 0.00 0.00 3.36
863 1496 1.001293 GGGAAAAAGCAAGGAAGGCTG 59.999 52.381 0.00 0.00 41.66 4.85
895 1529 7.867403 GCTGAAATTATTGTCCTGTTTCTTTCA 59.133 33.333 0.00 0.00 31.79 2.69
935 1608 4.883354 CTCGCAATGGCCCCTCCC 62.883 72.222 0.00 0.00 36.38 4.30
1016 1719 0.348370 ACAATGGAGGGAGGGGAGAT 59.652 55.000 0.00 0.00 0.00 2.75
1017 1720 0.769873 CAATGGAGGGAGGGGAGATG 59.230 60.000 0.00 0.00 0.00 2.90
1083 1801 1.198713 GAGAGGTCTTGATGCAGGGA 58.801 55.000 0.00 0.00 0.00 4.20
1084 1802 1.138661 GAGAGGTCTTGATGCAGGGAG 59.861 57.143 0.00 0.00 0.00 4.30
1364 2265 6.927933 TGCGTAGATCGATTATTACACATG 57.072 37.500 0.00 0.00 42.86 3.21
1368 2269 9.073368 GCGTAGATCGATTATTACACATGTATT 57.927 33.333 0.00 0.00 42.86 1.89
1406 2311 5.907207 TCGTCATCTTTTCCATTCTAGGAG 58.093 41.667 0.00 0.00 39.25 3.69
1430 2338 3.914426 ATCTATCTTCTTGCCACGGTT 57.086 42.857 0.00 0.00 0.00 4.44
1442 2350 2.156098 GCCACGGTTATGGAAGTTGAA 58.844 47.619 0.00 0.00 43.02 2.69
1703 2611 4.373116 GGCTGCGTCTTCGTGGGA 62.373 66.667 0.00 0.00 39.49 4.37
2093 3010 4.056125 CTGCTCTCCGGCGACACA 62.056 66.667 9.30 0.00 34.52 3.72
2096 3013 2.126307 CTCTCCGGCGACACACTG 60.126 66.667 9.30 0.00 0.00 3.66
2204 3168 4.249661 TGCAGTGAAGTATGCGTTTGATA 58.750 39.130 0.00 0.00 45.54 2.15
2235 3199 5.882557 ACCATGTTAACTTAGATGGCTTCTG 59.117 40.000 18.10 0.18 39.26 3.02
2242 3206 5.184892 ACTTAGATGGCTTCTGATGGTTT 57.815 39.130 12.77 0.00 35.79 3.27
2258 3222 8.081633 TCTGATGGTTTACTTGTTTAATGCAAG 58.918 33.333 14.83 14.83 46.23 4.01
2263 3227 9.906660 TGGTTTACTTGTTTAATGCAAGATAAG 57.093 29.630 20.31 3.34 44.29 1.73
2269 3233 9.726438 ACTTGTTTAATGCAAGATAAGAGTAGT 57.274 29.630 20.31 0.00 44.29 2.73
2286 3409 6.568869 AGAGTAGTAGTACGTATGACGAACT 58.431 40.000 5.94 9.06 46.05 3.01
2333 3456 6.533367 GCAGCTAAGCTATGGATGATTAGTAC 59.467 42.308 0.00 0.00 36.40 2.73
2351 3477 7.860918 TTAGTACGAGTGTATGAATGAGACT 57.139 36.000 0.00 0.00 32.11 3.24
2376 3526 1.967319 TTGTTCTGGCTTCTGACCAC 58.033 50.000 0.00 0.00 32.49 4.16
2385 3535 3.149196 GGCTTCTGACCACTTCAATTCA 58.851 45.455 0.00 0.00 32.21 2.57
2390 3540 4.569943 TCTGACCACTTCAATTCAGTAGC 58.430 43.478 0.00 0.00 37.38 3.58
2400 3550 4.516323 TCAATTCAGTAGCAATGCAGCTA 58.484 39.130 8.35 3.66 44.50 3.32
2417 3567 4.142004 GCAGCTAAGTAAGGGTAGCAGTAA 60.142 45.833 5.56 0.00 44.29 2.24
2433 3583 4.162320 AGCAGTAATGTAGCTAAGCAAGGA 59.838 41.667 0.00 0.00 36.73 3.36
2442 3592 3.749226 AGCTAAGCAAGGATAGGAATGC 58.251 45.455 0.00 0.00 39.06 3.56
2446 3596 3.939740 AGCAAGGATAGGAATGCTTCA 57.060 42.857 0.00 0.00 46.36 3.02
2447 3597 3.549794 AGCAAGGATAGGAATGCTTCAC 58.450 45.455 0.00 0.00 46.36 3.18
2448 3598 2.620585 GCAAGGATAGGAATGCTTCACC 59.379 50.000 0.00 0.00 41.38 4.02
2449 3599 3.217626 CAAGGATAGGAATGCTTCACCC 58.782 50.000 0.00 0.00 41.38 4.61
2450 3600 2.781667 AGGATAGGAATGCTTCACCCT 58.218 47.619 0.00 0.00 27.51 4.34
2451 3601 3.126453 AGGATAGGAATGCTTCACCCTT 58.874 45.455 0.00 0.00 27.51 3.95
2452 3602 3.529319 AGGATAGGAATGCTTCACCCTTT 59.471 43.478 0.00 0.00 27.51 3.11
2453 3603 3.633986 GGATAGGAATGCTTCACCCTTTG 59.366 47.826 0.00 0.00 0.00 2.77
2454 3604 2.683211 AGGAATGCTTCACCCTTTGT 57.317 45.000 0.00 0.00 0.00 2.83
2455 3605 2.962859 AGGAATGCTTCACCCTTTGTT 58.037 42.857 0.00 0.00 0.00 2.83
2476 3626 7.391148 TGTTCTGAACAAATAGCCTAAATCC 57.609 36.000 20.14 0.00 38.72 3.01
2485 3647 8.115490 ACAAATAGCCTAAATCCTATTCATGC 57.885 34.615 0.00 0.00 34.18 4.06
2495 3657 2.103094 TCCTATTCATGCCTCCGACAAG 59.897 50.000 0.00 0.00 0.00 3.16
2502 3664 3.197766 TCATGCCTCCGACAAGTATTTCT 59.802 43.478 0.00 0.00 0.00 2.52
2512 3675 3.170717 ACAAGTATTTCTGGACGGAGGA 58.829 45.455 0.00 0.00 0.00 3.71
2514 3677 4.041198 ACAAGTATTTCTGGACGGAGGAAA 59.959 41.667 0.00 0.00 34.22 3.13
2519 3682 3.887621 TTCTGGACGGAGGAAATACTG 57.112 47.619 0.00 0.00 0.00 2.74
2520 3683 2.108168 TCTGGACGGAGGAAATACTGG 58.892 52.381 0.00 0.00 0.00 4.00
2521 3684 0.539986 TGGACGGAGGAAATACTGGC 59.460 55.000 0.00 0.00 0.00 4.85
2548 3723 4.764679 TGCAGCTACTGGTTTGTATTTG 57.235 40.909 0.00 0.00 31.21 2.32
2550 3725 4.215399 TGCAGCTACTGGTTTGTATTTGAC 59.785 41.667 0.00 0.00 31.21 3.18
2571 3746 2.422597 CCGAGTCAAGTGCAACCAATA 58.577 47.619 0.00 0.00 37.80 1.90
2574 3749 4.082787 CCGAGTCAAGTGCAACCAATATTT 60.083 41.667 0.00 0.00 37.80 1.40
2576 3751 5.920273 CGAGTCAAGTGCAACCAATATTTTT 59.080 36.000 0.00 0.00 37.80 1.94
2585 3760 6.481644 GTGCAACCAATATTTTTGACAAAGGA 59.518 34.615 9.76 0.00 0.00 3.36
2589 3764 6.710278 ACCAATATTTTTGACAAAGGATGGG 58.290 36.000 17.24 13.49 0.00 4.00
2601 3776 2.905415 AGGATGGGATTTGTGAAGCA 57.095 45.000 0.00 0.00 0.00 3.91
2603 3778 3.716431 AGGATGGGATTTGTGAAGCATT 58.284 40.909 0.00 0.00 0.00 3.56
2607 3782 4.686191 TGGGATTTGTGAAGCATTTTGT 57.314 36.364 0.00 0.00 0.00 2.83
2632 3807 7.846644 TCTAGCTTCTCTTACTGTACTGTAC 57.153 40.000 11.72 10.98 0.00 2.90
2647 3822 1.812571 CTGTACAAGGTTGTCCATGCC 59.187 52.381 0.00 0.00 42.35 4.40
2661 3836 2.022195 CCATGCCCAGATTCTTCAGTG 58.978 52.381 0.00 0.00 0.00 3.66
2673 3848 6.652481 CAGATTCTTCAGTGGTTAGTTCACAT 59.348 38.462 0.00 0.00 37.58 3.21
2687 3862 5.489792 AGTTCACATGAAAGGAGCTTCTA 57.510 39.130 0.00 0.00 35.58 2.10
2747 3923 9.573133 CATGTAAATGTATCCTTCTCAAAAACC 57.427 33.333 0.00 0.00 0.00 3.27
2749 3925 8.792633 TGTAAATGTATCCTTCTCAAAAACCAG 58.207 33.333 0.00 0.00 0.00 4.00
2759 3935 6.073440 CCTTCTCAAAAACCAGCATCAATTTG 60.073 38.462 0.00 0.00 0.00 2.32
2770 3946 7.092716 ACCAGCATCAATTTGTCATTTCTTAC 58.907 34.615 0.00 0.00 0.00 2.34
2771 3947 7.092079 CCAGCATCAATTTGTCATTTCTTACA 58.908 34.615 0.00 0.00 0.00 2.41
2772 3948 7.762615 CCAGCATCAATTTGTCATTTCTTACAT 59.237 33.333 0.00 0.00 0.00 2.29
2773 3949 8.592155 CAGCATCAATTTGTCATTTCTTACATG 58.408 33.333 0.00 0.00 0.00 3.21
2774 3950 8.525316 AGCATCAATTTGTCATTTCTTACATGA 58.475 29.630 0.00 0.00 0.00 3.07
2775 3951 8.804743 GCATCAATTTGTCATTTCTTACATGAG 58.195 33.333 0.00 0.00 31.11 2.90
2827 4003 2.237143 CCTGAGAGGACCTTAATGTGCA 59.763 50.000 0.00 0.00 37.67 4.57
2839 4015 1.333177 AATGTGCAAAAACCCCGCTA 58.667 45.000 0.00 0.00 0.00 4.26
2841 4017 0.466555 TGTGCAAAAACCCCGCTACT 60.467 50.000 0.00 0.00 0.00 2.57
2889 4065 2.928116 CACGGAACCCTAGATCGAAAAC 59.072 50.000 0.00 0.00 0.00 2.43
2890 4066 2.564062 ACGGAACCCTAGATCGAAAACA 59.436 45.455 0.00 0.00 0.00 2.83
2891 4067 3.187700 CGGAACCCTAGATCGAAAACAG 58.812 50.000 0.00 0.00 0.00 3.16
2892 4068 2.937149 GGAACCCTAGATCGAAAACAGC 59.063 50.000 0.00 0.00 0.00 4.40
2893 4069 2.295253 ACCCTAGATCGAAAACAGCG 57.705 50.000 0.00 0.00 0.00 5.18
2895 4071 1.134788 CCCTAGATCGAAAACAGCGGT 60.135 52.381 0.00 0.00 0.00 5.68
2896 4072 1.927174 CCTAGATCGAAAACAGCGGTG 59.073 52.381 14.13 14.13 0.00 4.94
2898 4074 1.134694 GATCGAAAACAGCGGTGGC 59.865 57.895 20.20 4.37 40.37 5.01
2915 4091 3.157949 CCGCCCCTCCTTCTCCTC 61.158 72.222 0.00 0.00 0.00 3.71
2916 4092 3.157949 CGCCCCTCCTTCTCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
2917 4093 2.770475 GCCCCTCCTTCTCCTCCC 60.770 72.222 0.00 0.00 0.00 4.30
2918 4094 2.040359 CCCCTCCTTCTCCTCCCC 60.040 72.222 0.00 0.00 0.00 4.81
2919 4095 2.652113 CCCCTCCTTCTCCTCCCCT 61.652 68.421 0.00 0.00 0.00 4.79
2920 4096 1.074850 CCCTCCTTCTCCTCCCCTC 60.075 68.421 0.00 0.00 0.00 4.30
2921 4097 1.456705 CCTCCTTCTCCTCCCCTCG 60.457 68.421 0.00 0.00 0.00 4.63
2922 4098 2.042843 TCCTTCTCCTCCCCTCGC 60.043 66.667 0.00 0.00 0.00 5.03
2923 4099 3.157949 CCTTCTCCTCCCCTCGCC 61.158 72.222 0.00 0.00 0.00 5.54
2924 4100 3.532155 CTTCTCCTCCCCTCGCCG 61.532 72.222 0.00 0.00 0.00 6.46
2942 4118 4.933064 CCGATGGAGAGCGTCGCC 62.933 72.222 14.86 5.55 36.83 5.54
2944 4120 4.933064 GATGGAGAGCGTCGCCGG 62.933 72.222 14.86 0.00 39.36 6.13
2991 4167 4.035102 GGGCTGCCCTCCTTCGTT 62.035 66.667 30.42 0.00 41.34 3.85
2992 4168 2.436824 GGCTGCCCTCCTTCGTTC 60.437 66.667 7.66 0.00 0.00 3.95
2993 4169 2.436824 GCTGCCCTCCTTCGTTCC 60.437 66.667 0.00 0.00 0.00 3.62
2994 4170 2.269241 CTGCCCTCCTTCGTTCCC 59.731 66.667 0.00 0.00 0.00 3.97
2995 4171 3.665675 CTGCCCTCCTTCGTTCCCG 62.666 68.421 0.00 0.00 0.00 5.14
2996 4172 4.468689 GCCCTCCTTCGTTCCCGG 62.469 72.222 0.00 0.00 33.95 5.73
2997 4173 3.001406 CCCTCCTTCGTTCCCGGT 61.001 66.667 0.00 0.00 33.95 5.28
2998 4174 2.264794 CCTCCTTCGTTCCCGGTG 59.735 66.667 0.00 0.00 33.95 4.94
2999 4175 2.264794 CTCCTTCGTTCCCGGTGG 59.735 66.667 0.00 0.00 33.95 4.61
3000 4176 3.952628 CTCCTTCGTTCCCGGTGGC 62.953 68.421 0.00 0.00 33.95 5.01
3019 4195 3.479269 CGAAGGCTTGGCGTCGAC 61.479 66.667 22.71 5.18 38.44 4.20
3020 4196 2.357034 GAAGGCTTGGCGTCGACA 60.357 61.111 17.16 0.00 0.00 4.35
3021 4197 2.665185 AAGGCTTGGCGTCGACAC 60.665 61.111 17.16 5.54 0.00 3.67
3058 4234 3.372730 CGTGGGCACATGGGGTTG 61.373 66.667 0.00 0.00 0.00 3.77
3059 4235 3.694538 GTGGGCACATGGGGTTGC 61.695 66.667 0.00 0.00 0.00 4.17
3060 4236 3.913445 TGGGCACATGGGGTTGCT 61.913 61.111 0.00 0.00 0.00 3.91
3061 4237 3.384532 GGGCACATGGGGTTGCTG 61.385 66.667 0.00 0.00 0.00 4.41
3062 4238 4.073200 GGCACATGGGGTTGCTGC 62.073 66.667 0.00 0.00 0.00 5.25
3063 4239 4.424566 GCACATGGGGTTGCTGCG 62.425 66.667 0.00 0.00 0.00 5.18
3064 4240 3.751246 CACATGGGGTTGCTGCGG 61.751 66.667 0.00 0.00 0.00 5.69
3065 4241 4.284550 ACATGGGGTTGCTGCGGT 62.285 61.111 0.00 0.00 0.00 5.68
3066 4242 3.751246 CATGGGGTTGCTGCGGTG 61.751 66.667 0.00 0.00 0.00 4.94
3094 4270 4.612536 GCGGCGGCCATTTCGATG 62.613 66.667 20.71 0.45 0.00 3.84
3095 4271 3.952675 CGGCGGCCATTTCGATGG 61.953 66.667 20.71 0.37 44.44 3.51
3096 4272 3.595758 GGCGGCCATTTCGATGGG 61.596 66.667 15.62 0.43 41.94 4.00
3100 4276 4.240881 GCCATTTCGATGGGCTGA 57.759 55.556 13.46 0.00 44.32 4.26
3101 4277 2.724520 GCCATTTCGATGGGCTGAT 58.275 52.632 13.46 0.00 44.32 2.90
3102 4278 0.313043 GCCATTTCGATGGGCTGATG 59.687 55.000 13.46 0.00 44.32 3.07
3103 4279 0.313043 CCATTTCGATGGGCTGATGC 59.687 55.000 0.00 0.00 38.04 3.91
3104 4280 0.040692 CATTTCGATGGGCTGATGCG 60.041 55.000 0.00 0.00 40.82 4.73
3111 4287 2.486966 GGGCTGATGCGCTTCAAC 59.513 61.111 24.09 20.02 46.81 3.18
3112 4288 2.099062 GGCTGATGCGCTTCAACG 59.901 61.111 24.09 15.69 40.82 4.10
3113 4289 2.099062 GCTGATGCGCTTCAACGG 59.901 61.111 24.09 15.05 0.00 4.44
3114 4290 2.680913 GCTGATGCGCTTCAACGGT 61.681 57.895 24.09 0.00 0.00 4.83
3115 4291 1.133253 CTGATGCGCTTCAACGGTG 59.867 57.895 24.09 10.55 0.00 4.94
3116 4292 2.244436 CTGATGCGCTTCAACGGTGG 62.244 60.000 24.09 9.90 0.00 4.61
3117 4293 3.667429 GATGCGCTTCAACGGTGGC 62.667 63.158 17.62 0.00 0.00 5.01
3121 4297 3.423154 GCTTCAACGGTGGCGGAG 61.423 66.667 0.00 0.00 0.00 4.63
3122 4298 2.742372 CTTCAACGGTGGCGGAGG 60.742 66.667 0.00 0.00 0.00 4.30
3123 4299 4.323477 TTCAACGGTGGCGGAGGG 62.323 66.667 0.00 0.00 0.00 4.30
3137 4313 3.334054 AGGGCTTCCTCTGGTGGC 61.334 66.667 0.00 0.00 35.60 5.01
3138 4314 4.432741 GGGCTTCCTCTGGTGGCC 62.433 72.222 0.00 0.00 39.27 5.36
3139 4315 4.785453 GGCTTCCTCTGGTGGCCG 62.785 72.222 0.00 0.00 33.85 6.13
3141 4317 4.020617 CTTCCTCTGGTGGCCGCA 62.021 66.667 19.98 3.32 0.00 5.69
3142 4318 3.329889 TTCCTCTGGTGGCCGCAT 61.330 61.111 19.98 0.00 0.00 4.73
3143 4319 3.626996 TTCCTCTGGTGGCCGCATG 62.627 63.158 19.98 10.06 0.00 4.06
3145 4321 4.790962 CTCTGGTGGCCGCATGCT 62.791 66.667 19.98 0.00 40.92 3.79
3146 4322 4.783621 TCTGGTGGCCGCATGCTC 62.784 66.667 19.98 7.20 40.92 4.26
3147 4323 4.790962 CTGGTGGCCGCATGCTCT 62.791 66.667 19.98 0.00 40.92 4.09
3148 4324 4.783621 TGGTGGCCGCATGCTCTC 62.784 66.667 19.98 5.14 40.92 3.20
3150 4326 4.479993 GTGGCCGCATGCTCTCCT 62.480 66.667 17.13 0.00 40.92 3.69
3151 4327 4.478371 TGGCCGCATGCTCTCCTG 62.478 66.667 17.13 0.00 40.92 3.86
3152 4328 4.166888 GGCCGCATGCTCTCCTGA 62.167 66.667 17.13 0.00 40.92 3.86
3153 4329 2.588314 GCCGCATGCTCTCCTGAG 60.588 66.667 17.13 0.00 42.96 3.35
3162 4338 2.805897 CTCTCCTGAGCGTGGATCT 58.194 57.895 0.00 0.00 33.12 2.75
3163 4339 0.667993 CTCTCCTGAGCGTGGATCTC 59.332 60.000 0.00 0.00 33.12 2.75
3164 4340 0.257328 TCTCCTGAGCGTGGATCTCT 59.743 55.000 0.00 0.00 32.56 3.10
3165 4341 0.385029 CTCCTGAGCGTGGATCTCTG 59.615 60.000 0.00 0.00 32.56 3.35
3166 4342 1.227205 CCTGAGCGTGGATCTCTGC 60.227 63.158 0.00 0.00 0.00 4.26
3167 4343 1.227205 CTGAGCGTGGATCTCTGCC 60.227 63.158 0.00 0.00 0.00 4.85
3168 4344 2.279120 GAGCGTGGATCTCTGCCG 60.279 66.667 0.00 0.00 0.00 5.69
3169 4345 3.781770 GAGCGTGGATCTCTGCCGG 62.782 68.421 0.00 0.00 0.00 6.13
3172 4348 4.899239 GTGGATCTCTGCCGGCGG 62.899 72.222 30.18 30.18 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.757897 ATGGTTGTGGATGTAGTAATGTTG 57.242 37.500 0.00 0.00 0.00 3.33
2 3 6.945435 TGAATGGTTGTGGATGTAGTAATGTT 59.055 34.615 0.00 0.00 0.00 2.71
3 4 6.480763 TGAATGGTTGTGGATGTAGTAATGT 58.519 36.000 0.00 0.00 0.00 2.71
4 5 7.282901 TGATGAATGGTTGTGGATGTAGTAATG 59.717 37.037 0.00 0.00 0.00 1.90
5 6 7.345691 TGATGAATGGTTGTGGATGTAGTAAT 58.654 34.615 0.00 0.00 0.00 1.89
6 7 6.716284 TGATGAATGGTTGTGGATGTAGTAA 58.284 36.000 0.00 0.00 0.00 2.24
7 8 6.306643 TGATGAATGGTTGTGGATGTAGTA 57.693 37.500 0.00 0.00 0.00 1.82
8 9 5.178096 TGATGAATGGTTGTGGATGTAGT 57.822 39.130 0.00 0.00 0.00 2.73
9 10 5.415389 TGTTGATGAATGGTTGTGGATGTAG 59.585 40.000 0.00 0.00 0.00 2.74
10 11 5.320277 TGTTGATGAATGGTTGTGGATGTA 58.680 37.500 0.00 0.00 0.00 2.29
11 12 4.151121 TGTTGATGAATGGTTGTGGATGT 58.849 39.130 0.00 0.00 0.00 3.06
12 13 4.787260 TGTTGATGAATGGTTGTGGATG 57.213 40.909 0.00 0.00 0.00 3.51
13 14 6.664816 AGTAATGTTGATGAATGGTTGTGGAT 59.335 34.615 0.00 0.00 0.00 3.41
14 15 6.009589 AGTAATGTTGATGAATGGTTGTGGA 58.990 36.000 0.00 0.00 0.00 4.02
15 16 6.271488 AGTAATGTTGATGAATGGTTGTGG 57.729 37.500 0.00 0.00 0.00 4.17
16 17 7.815641 TGTAGTAATGTTGATGAATGGTTGTG 58.184 34.615 0.00 0.00 0.00 3.33
17 18 7.994425 TGTAGTAATGTTGATGAATGGTTGT 57.006 32.000 0.00 0.00 0.00 3.32
18 19 8.676401 TGATGTAGTAATGTTGATGAATGGTTG 58.324 33.333 0.00 0.00 0.00 3.77
19 20 8.806429 TGATGTAGTAATGTTGATGAATGGTT 57.194 30.769 0.00 0.00 0.00 3.67
20 21 8.677300 GTTGATGTAGTAATGTTGATGAATGGT 58.323 33.333 0.00 0.00 0.00 3.55
21 22 8.676401 TGTTGATGTAGTAATGTTGATGAATGG 58.324 33.333 0.00 0.00 0.00 3.16
24 25 8.511321 GGTTGTTGATGTAGTAATGTTGATGAA 58.489 33.333 0.00 0.00 0.00 2.57
25 26 7.663493 TGGTTGTTGATGTAGTAATGTTGATGA 59.337 33.333 0.00 0.00 0.00 2.92
26 27 7.815641 TGGTTGTTGATGTAGTAATGTTGATG 58.184 34.615 0.00 0.00 0.00 3.07
27 28 7.994425 TGGTTGTTGATGTAGTAATGTTGAT 57.006 32.000 0.00 0.00 0.00 2.57
28 29 7.994425 ATGGTTGTTGATGTAGTAATGTTGA 57.006 32.000 0.00 0.00 0.00 3.18
29 30 7.541783 CCAATGGTTGTTGATGTAGTAATGTTG 59.458 37.037 0.00 0.00 0.00 3.33
30 31 7.232534 ACCAATGGTTGTTGATGTAGTAATGTT 59.767 33.333 0.00 0.00 27.29 2.71
31 32 6.719370 ACCAATGGTTGTTGATGTAGTAATGT 59.281 34.615 0.00 0.00 27.29 2.71
32 33 7.094420 TGACCAATGGTTGTTGATGTAGTAATG 60.094 37.037 6.30 0.00 35.25 1.90
33 34 6.945435 TGACCAATGGTTGTTGATGTAGTAAT 59.055 34.615 6.30 0.00 35.25 1.89
34 35 6.299922 TGACCAATGGTTGTTGATGTAGTAA 58.700 36.000 6.30 0.00 35.25 2.24
35 36 5.870706 TGACCAATGGTTGTTGATGTAGTA 58.129 37.500 6.30 0.00 35.25 1.82
36 37 4.724399 TGACCAATGGTTGTTGATGTAGT 58.276 39.130 6.30 0.00 35.25 2.73
37 38 5.009510 TGTTGACCAATGGTTGTTGATGTAG 59.990 40.000 6.30 0.00 35.25 2.74
38 39 4.889995 TGTTGACCAATGGTTGTTGATGTA 59.110 37.500 6.30 0.00 35.25 2.29
39 40 3.703556 TGTTGACCAATGGTTGTTGATGT 59.296 39.130 6.30 0.00 35.25 3.06
40 41 4.319139 TGTTGACCAATGGTTGTTGATG 57.681 40.909 6.30 0.00 35.25 3.07
41 42 5.070180 TGATTGTTGACCAATGGTTGTTGAT 59.930 36.000 6.30 0.00 43.87 2.57
42 43 4.403752 TGATTGTTGACCAATGGTTGTTGA 59.596 37.500 6.30 0.00 43.87 3.18
43 44 4.691175 TGATTGTTGACCAATGGTTGTTG 58.309 39.130 6.30 0.00 43.87 3.33
44 45 5.549742 ATGATTGTTGACCAATGGTTGTT 57.450 34.783 6.30 0.00 43.87 2.83
45 46 5.070180 TGAATGATTGTTGACCAATGGTTGT 59.930 36.000 6.30 0.00 43.87 3.32
46 47 5.539979 TGAATGATTGTTGACCAATGGTTG 58.460 37.500 6.30 0.00 43.87 3.77
47 48 5.804944 TGAATGATTGTTGACCAATGGTT 57.195 34.783 6.30 0.00 43.87 3.67
48 49 5.481122 TGATGAATGATTGTTGACCAATGGT 59.519 36.000 3.74 3.74 43.87 3.55
49 50 5.968254 TGATGAATGATTGTTGACCAATGG 58.032 37.500 0.00 0.00 43.87 3.16
50 51 7.979537 AGAATGATGAATGATTGTTGACCAATG 59.020 33.333 0.00 0.00 43.87 2.82
51 52 8.074613 AGAATGATGAATGATTGTTGACCAAT 57.925 30.769 0.00 0.00 46.51 3.16
52 53 7.470935 AGAATGATGAATGATTGTTGACCAA 57.529 32.000 0.00 0.00 37.49 3.67
53 54 8.578448 TTAGAATGATGAATGATTGTTGACCA 57.422 30.769 0.00 0.00 0.00 4.02
86 87 1.984424 TGGATGGTGAATGTGTGGAGA 59.016 47.619 0.00 0.00 0.00 3.71
98 99 6.833416 TGGAATATTTAGAAAGGTGGATGGTG 59.167 38.462 0.00 0.00 0.00 4.17
99 100 6.833933 GTGGAATATTTAGAAAGGTGGATGGT 59.166 38.462 0.00 0.00 0.00 3.55
100 101 6.833416 TGTGGAATATTTAGAAAGGTGGATGG 59.167 38.462 0.00 0.00 0.00 3.51
101 102 7.339212 TGTGTGGAATATTTAGAAAGGTGGATG 59.661 37.037 0.00 0.00 0.00 3.51
102 103 7.410174 TGTGTGGAATATTTAGAAAGGTGGAT 58.590 34.615 0.00 0.00 0.00 3.41
103 104 6.785076 TGTGTGGAATATTTAGAAAGGTGGA 58.215 36.000 0.00 0.00 0.00 4.02
104 105 7.645058 ATGTGTGGAATATTTAGAAAGGTGG 57.355 36.000 0.00 0.00 0.00 4.61
161 167 4.841813 TGAACCCTACTTCATCTTGTGGTA 59.158 41.667 0.00 0.00 0.00 3.25
175 181 2.238646 TGGATGTGTGGATGAACCCTAC 59.761 50.000 0.00 0.00 38.00 3.18
190 196 9.061252 TGTATCAATGGAAGGATATATGGATGT 57.939 33.333 0.00 0.00 0.00 3.06
204 210 6.475504 AGAGTTGATGTGTGTATCAATGGAA 58.524 36.000 4.70 0.00 45.67 3.53
282 289 2.843113 TGTGTGGATGTGTGGATGGATA 59.157 45.455 0.00 0.00 0.00 2.59
283 290 1.634973 TGTGTGGATGTGTGGATGGAT 59.365 47.619 0.00 0.00 0.00 3.41
286 293 2.019249 GGATGTGTGGATGTGTGGATG 58.981 52.381 0.00 0.00 0.00 3.51
287 294 1.634973 TGGATGTGTGGATGTGTGGAT 59.365 47.619 0.00 0.00 0.00 3.41
288 295 1.063183 TGGATGTGTGGATGTGTGGA 58.937 50.000 0.00 0.00 0.00 4.02
289 296 1.167851 GTGGATGTGTGGATGTGTGG 58.832 55.000 0.00 0.00 0.00 4.17
290 297 1.536766 GTGTGGATGTGTGGATGTGTG 59.463 52.381 0.00 0.00 0.00 3.82
291 298 1.142667 TGTGTGGATGTGTGGATGTGT 59.857 47.619 0.00 0.00 0.00 3.72
292 299 1.894881 TGTGTGGATGTGTGGATGTG 58.105 50.000 0.00 0.00 0.00 3.21
293 300 2.618816 GGATGTGTGGATGTGTGGATGT 60.619 50.000 0.00 0.00 0.00 3.06
294 301 2.019249 GGATGTGTGGATGTGTGGATG 58.981 52.381 0.00 0.00 0.00 3.51
295 302 1.634973 TGGATGTGTGGATGTGTGGAT 59.365 47.619 0.00 0.00 0.00 3.41
296 303 1.063183 TGGATGTGTGGATGTGTGGA 58.937 50.000 0.00 0.00 0.00 4.02
297 304 1.541147 GTTGGATGTGTGGATGTGTGG 59.459 52.381 0.00 0.00 0.00 4.17
298 305 2.228925 TGTTGGATGTGTGGATGTGTG 58.771 47.619 0.00 0.00 0.00 3.82
299 306 2.655090 TGTTGGATGTGTGGATGTGT 57.345 45.000 0.00 0.00 0.00 3.72
300 307 6.149973 GGATATATGTTGGATGTGTGGATGTG 59.850 42.308 0.00 0.00 0.00 3.21
301 308 6.183361 TGGATATATGTTGGATGTGTGGATGT 60.183 38.462 0.00 0.00 0.00 3.06
302 309 6.240145 TGGATATATGTTGGATGTGTGGATG 58.760 40.000 0.00 0.00 0.00 3.51
303 310 6.452757 TGGATATATGTTGGATGTGTGGAT 57.547 37.500 0.00 0.00 0.00 3.41
304 311 5.903198 TGGATATATGTTGGATGTGTGGA 57.097 39.130 0.00 0.00 0.00 4.02
305 312 5.649395 GGATGGATATATGTTGGATGTGTGG 59.351 44.000 0.00 0.00 0.00 4.17
306 313 6.240145 TGGATGGATATATGTTGGATGTGTG 58.760 40.000 0.00 0.00 0.00 3.82
307 314 6.452757 TGGATGGATATATGTTGGATGTGT 57.547 37.500 0.00 0.00 0.00 3.72
308 315 7.612633 TGAATGGATGGATATATGTTGGATGTG 59.387 37.037 0.00 0.00 0.00 3.21
309 316 7.701815 TGAATGGATGGATATATGTTGGATGT 58.298 34.615 0.00 0.00 0.00 3.06
310 317 8.762481 ATGAATGGATGGATATATGTTGGATG 57.238 34.615 0.00 0.00 0.00 3.51
311 318 8.562635 TGATGAATGGATGGATATATGTTGGAT 58.437 33.333 0.00 0.00 0.00 3.41
312 319 7.830697 GTGATGAATGGATGGATATATGTTGGA 59.169 37.037 0.00 0.00 0.00 3.53
313 320 7.612633 TGTGATGAATGGATGGATATATGTTGG 59.387 37.037 0.00 0.00 0.00 3.77
314 321 8.456471 GTGTGATGAATGGATGGATATATGTTG 58.544 37.037 0.00 0.00 0.00 3.33
315 322 8.165397 TGTGTGATGAATGGATGGATATATGTT 58.835 33.333 0.00 0.00 0.00 2.71
316 323 7.692172 TGTGTGATGAATGGATGGATATATGT 58.308 34.615 0.00 0.00 0.00 2.29
317 324 8.747538 ATGTGTGATGAATGGATGGATATATG 57.252 34.615 0.00 0.00 0.00 1.78
318 325 9.404848 GAATGTGTGATGAATGGATGGATATAT 57.595 33.333 0.00 0.00 0.00 0.86
319 326 8.384718 TGAATGTGTGATGAATGGATGGATATA 58.615 33.333 0.00 0.00 0.00 0.86
320 327 7.235804 TGAATGTGTGATGAATGGATGGATAT 58.764 34.615 0.00 0.00 0.00 1.63
321 328 6.603224 TGAATGTGTGATGAATGGATGGATA 58.397 36.000 0.00 0.00 0.00 2.59
322 329 5.451354 TGAATGTGTGATGAATGGATGGAT 58.549 37.500 0.00 0.00 0.00 3.41
323 330 4.857679 TGAATGTGTGATGAATGGATGGA 58.142 39.130 0.00 0.00 0.00 3.41
324 331 5.784578 ATGAATGTGTGATGAATGGATGG 57.215 39.130 0.00 0.00 0.00 3.51
326 333 9.404848 GGATATATGAATGTGTGATGAATGGAT 57.595 33.333 0.00 0.00 0.00 3.41
327 334 8.384718 TGGATATATGAATGTGTGATGAATGGA 58.615 33.333 0.00 0.00 0.00 3.41
328 335 8.570068 TGGATATATGAATGTGTGATGAATGG 57.430 34.615 0.00 0.00 0.00 3.16
329 336 9.836076 GTTGGATATATGAATGTGTGATGAATG 57.164 33.333 0.00 0.00 0.00 2.67
330 337 9.577222 TGTTGGATATATGAATGTGTGATGAAT 57.423 29.630 0.00 0.00 0.00 2.57
331 338 8.977267 TGTTGGATATATGAATGTGTGATGAA 57.023 30.769 0.00 0.00 0.00 2.57
349 356 9.417561 GGATGAATGGATGAATATATGTTGGAT 57.582 33.333 0.00 0.00 0.00 3.41
350 357 8.392479 TGGATGAATGGATGAATATATGTTGGA 58.608 33.333 0.00 0.00 0.00 3.53
351 358 8.464404 GTGGATGAATGGATGAATATATGTTGG 58.536 37.037 0.00 0.00 0.00 3.77
352 359 9.016438 TGTGGATGAATGGATGAATATATGTTG 57.984 33.333 0.00 0.00 0.00 3.33
353 360 9.017509 GTGTGGATGAATGGATGAATATATGTT 57.982 33.333 0.00 0.00 0.00 2.71
354 361 8.165397 TGTGTGGATGAATGGATGAATATATGT 58.835 33.333 0.00 0.00 0.00 2.29
355 362 8.570068 TGTGTGGATGAATGGATGAATATATG 57.430 34.615 0.00 0.00 0.00 1.78
356 363 9.763837 AATGTGTGGATGAATGGATGAATATAT 57.236 29.630 0.00 0.00 0.00 0.86
357 364 9.234827 GAATGTGTGGATGAATGGATGAATATA 57.765 33.333 0.00 0.00 0.00 0.86
358 365 7.726738 TGAATGTGTGGATGAATGGATGAATAT 59.273 33.333 0.00 0.00 0.00 1.28
359 366 7.061688 TGAATGTGTGGATGAATGGATGAATA 58.938 34.615 0.00 0.00 0.00 1.75
360 367 5.894964 TGAATGTGTGGATGAATGGATGAAT 59.105 36.000 0.00 0.00 0.00 2.57
361 368 5.262804 TGAATGTGTGGATGAATGGATGAA 58.737 37.500 0.00 0.00 0.00 2.57
362 369 4.857679 TGAATGTGTGGATGAATGGATGA 58.142 39.130 0.00 0.00 0.00 2.92
367 374 8.570068 TGGATATATGAATGTGTGGATGAATG 57.430 34.615 0.00 0.00 0.00 2.67
402 409 5.784578 ATGAATGTGTGGATGAATGGATG 57.215 39.130 0.00 0.00 0.00 3.51
427 434 8.003044 GGATGAATGGATGGATATATGTTGGAT 58.997 37.037 0.00 0.00 0.00 3.41
430 437 7.612633 TGTGGATGAATGGATGGATATATGTTG 59.387 37.037 0.00 0.00 0.00 3.33
434 441 7.274772 TGTGTGGATGAATGGATGGATATAT 57.725 36.000 0.00 0.00 0.00 0.86
435 442 6.700845 TGTGTGGATGAATGGATGGATATA 57.299 37.500 0.00 0.00 0.00 0.86
495 502 2.420408 CCGAAATAGAGCGGGGGTTTAA 60.420 50.000 0.00 0.00 43.67 1.52
497 504 0.107361 CCGAAATAGAGCGGGGGTTT 60.107 55.000 0.00 0.00 43.67 3.27
498 505 1.525442 CCGAAATAGAGCGGGGGTT 59.475 57.895 0.00 0.00 43.67 4.11
505 1090 0.529992 CCCACCGACCGAAATAGAGC 60.530 60.000 0.00 0.00 0.00 4.09
543 1160 2.287970 GGGTTTGAACAGTTAAAGGCCG 60.288 50.000 0.00 0.00 0.00 6.13
570 1187 0.179073 CCTACCGCCATTGACTCTGG 60.179 60.000 0.00 0.00 36.81 3.86
574 1191 1.802553 ATACCCTACCGCCATTGACT 58.197 50.000 0.00 0.00 0.00 3.41
585 1202 4.107363 GCGATAGGCAGTTATACCCTAC 57.893 50.000 0.00 0.00 42.87 3.18
615 1232 1.065491 TGCCGTCAATCTTACTGCCAT 60.065 47.619 0.00 0.00 0.00 4.40
616 1233 0.323302 TGCCGTCAATCTTACTGCCA 59.677 50.000 0.00 0.00 0.00 4.92
617 1234 1.009829 CTGCCGTCAATCTTACTGCC 58.990 55.000 0.00 0.00 0.00 4.85
618 1235 1.929836 CTCTGCCGTCAATCTTACTGC 59.070 52.381 0.00 0.00 0.00 4.40
620 1237 1.134670 GCCTCTGCCGTCAATCTTACT 60.135 52.381 0.00 0.00 0.00 2.24
637 1254 3.752339 GTAACGACCCGTCCGCCT 61.752 66.667 0.00 0.00 39.99 5.52
640 1257 1.154150 GTCAGTAACGACCCGTCCG 60.154 63.158 0.00 0.00 39.99 4.79
644 1261 0.594602 TCAGTGTCAGTAACGACCCG 59.405 55.000 0.00 0.00 34.88 5.28
655 1272 0.105778 TGGCGTTCATGTCAGTGTCA 59.894 50.000 0.00 0.00 0.00 3.58
657 1274 0.392706 TCTGGCGTTCATGTCAGTGT 59.607 50.000 0.65 0.00 42.22 3.55
659 1276 0.969149 TCTCTGGCGTTCATGTCAGT 59.031 50.000 0.65 0.00 42.22 3.41
664 1281 1.073964 CAGTGTCTCTGGCGTTCATG 58.926 55.000 0.00 0.00 40.23 3.07
665 1282 3.521995 CAGTGTCTCTGGCGTTCAT 57.478 52.632 0.00 0.00 40.23 2.57
680 1309 2.290071 GCATAACACCACCTACCACAGT 60.290 50.000 0.00 0.00 0.00 3.55
684 1313 3.069016 CGATAGCATAACACCACCTACCA 59.931 47.826 0.00 0.00 0.00 3.25
685 1314 3.069158 ACGATAGCATAACACCACCTACC 59.931 47.826 0.00 0.00 42.67 3.18
707 1337 1.676635 CTACCGTCAGTCACCCCGA 60.677 63.158 0.00 0.00 0.00 5.14
710 1340 0.971386 TTTCCTACCGTCAGTCACCC 59.029 55.000 0.00 0.00 0.00 4.61
748 1381 2.159156 AGCACGATATGACGCCACTTAA 60.159 45.455 0.00 0.00 36.70 1.85
752 1385 0.527600 TCAGCACGATATGACGCCAC 60.528 55.000 0.00 0.00 36.70 5.01
756 1389 5.696260 TTAAAGTTCAGCACGATATGACG 57.304 39.130 0.00 0.00 39.31 4.35
785 1418 3.119955 GGCCAAATTCACCGTTCTAACTC 60.120 47.826 0.00 0.00 0.00 3.01
786 1419 2.817844 GGCCAAATTCACCGTTCTAACT 59.182 45.455 0.00 0.00 0.00 2.24
789 1422 2.871096 AGGCCAAATTCACCGTTCTA 57.129 45.000 5.01 0.00 0.00 2.10
790 1423 1.995376 AAGGCCAAATTCACCGTTCT 58.005 45.000 5.01 0.00 0.00 3.01
794 1427 3.059166 CAAGAAAAGGCCAAATTCACCG 58.941 45.455 5.01 0.00 0.00 4.94
795 1428 4.071961 ACAAGAAAAGGCCAAATTCACC 57.928 40.909 5.01 0.00 0.00 4.02
796 1429 6.045955 TGTTACAAGAAAAGGCCAAATTCAC 58.954 36.000 5.01 1.02 0.00 3.18
809 1442 7.094508 TCAAACAGCAGAATGTTACAAGAAA 57.905 32.000 0.00 0.00 42.49 2.52
811 1444 6.486320 TGATCAAACAGCAGAATGTTACAAGA 59.514 34.615 0.00 0.00 42.49 3.02
812 1445 6.671190 TGATCAAACAGCAGAATGTTACAAG 58.329 36.000 0.00 0.00 42.49 3.16
813 1446 6.262944 ACTGATCAAACAGCAGAATGTTACAA 59.737 34.615 0.00 0.00 42.49 2.41
814 1447 5.764686 ACTGATCAAACAGCAGAATGTTACA 59.235 36.000 0.00 0.00 42.49 2.41
815 1448 6.073058 TGACTGATCAAACAGCAGAATGTTAC 60.073 38.462 0.00 0.00 42.49 2.50
834 1467 3.384467 CCTTGCTTTTTCCCTTTGACTGA 59.616 43.478 0.00 0.00 0.00 3.41
858 1491 0.541296 AATTTCAGCCTGTGCAGCCT 60.541 50.000 0.00 0.00 41.13 4.58
863 1496 3.445096 AGGACAATAATTTCAGCCTGTGC 59.555 43.478 0.00 0.00 37.95 4.57
872 1506 9.750125 AACTGAAAGAAACAGGACAATAATTTC 57.250 29.630 0.00 0.00 39.38 2.17
895 1529 2.821969 CAGCAGAGCATACCCAAAAACT 59.178 45.455 0.00 0.00 0.00 2.66
935 1608 4.022849 AGAGAATGGCAAAAGAGGAAAACG 60.023 41.667 0.00 0.00 0.00 3.60
1016 1719 4.600576 TCACGCTCTTGCCGCACA 62.601 61.111 0.00 0.00 35.36 4.57
1017 1720 3.782244 CTCACGCTCTTGCCGCAC 61.782 66.667 0.00 0.00 35.36 5.34
1368 2269 8.792830 AAAGATGACGAATTTCTTCCTGATAA 57.207 30.769 0.00 0.00 0.00 1.75
1372 2273 6.072508 TGGAAAAGATGACGAATTTCTTCCTG 60.073 38.462 9.73 0.00 33.42 3.86
1406 2311 6.026947 ACCGTGGCAAGAAGATAGATATAC 57.973 41.667 0.76 0.00 0.00 1.47
1430 2338 4.471904 ACGCAGATCTTCAACTTCCATA 57.528 40.909 0.00 0.00 0.00 2.74
1442 2350 3.425578 CGACAGGAAACGCAGATCT 57.574 52.632 0.00 0.00 0.00 2.75
2096 3013 1.227380 AATCCGGACGCTGAGCATC 60.227 57.895 6.12 0.00 0.00 3.91
2150 3099 2.749682 CTGGCCTGTGGTGTAGCA 59.250 61.111 3.32 0.00 0.00 3.49
2204 3168 6.319658 CCATCTAAGTTAACATGGTGCAGATT 59.680 38.462 8.61 0.00 32.49 2.40
2235 3199 8.986477 ATCTTGCATTAAACAAGTAAACCATC 57.014 30.769 16.73 0.00 43.97 3.51
2258 3222 8.735303 TCGTCATACGTACTACTACTCTTATC 57.265 38.462 0.00 0.00 43.14 1.75
2262 3226 6.820470 GTTCGTCATACGTACTACTACTCT 57.180 41.667 0.00 0.00 43.14 3.24
2271 3235 6.088483 TGAATTGAACAGTTCGTCATACGTAC 59.912 38.462 8.80 1.58 43.14 3.67
2273 3237 4.986034 TGAATTGAACAGTTCGTCATACGT 59.014 37.500 8.80 0.00 43.14 3.57
2286 3409 4.515191 GCACTACTTCCACTGAATTGAACA 59.485 41.667 0.00 0.00 0.00 3.18
2333 3456 8.697960 CAATTCATAGTCTCATTCATACACTCG 58.302 37.037 0.00 0.00 0.00 4.18
2351 3477 4.943705 GGTCAGAAGCCAGAACAATTCATA 59.056 41.667 0.00 0.00 0.00 2.15
2376 3526 4.103357 GCTGCATTGCTACTGAATTGAAG 58.897 43.478 10.49 0.00 0.00 3.02
2385 3535 4.446371 CCTTACTTAGCTGCATTGCTACT 58.554 43.478 10.49 9.42 44.15 2.57
2390 3540 3.561725 GCTACCCTTACTTAGCTGCATTG 59.438 47.826 1.02 0.00 38.16 2.82
2399 3549 6.837568 AGCTACATTACTGCTACCCTTACTTA 59.162 38.462 0.00 0.00 35.05 2.24
2400 3550 5.661759 AGCTACATTACTGCTACCCTTACTT 59.338 40.000 0.00 0.00 35.05 2.24
2401 3551 5.209659 AGCTACATTACTGCTACCCTTACT 58.790 41.667 0.00 0.00 35.05 2.24
2402 3552 5.532664 AGCTACATTACTGCTACCCTTAC 57.467 43.478 0.00 0.00 35.05 2.34
2417 3567 6.471146 CATTCCTATCCTTGCTTAGCTACAT 58.529 40.000 5.60 0.00 0.00 2.29
2433 3583 4.322057 ACAAAGGGTGAAGCATTCCTAT 57.678 40.909 0.00 0.00 46.93 2.57
2452 3602 7.175104 AGGATTTAGGCTATTTGTTCAGAACA 58.825 34.615 12.24 12.24 40.21 3.18
2453 3603 7.631717 AGGATTTAGGCTATTTGTTCAGAAC 57.368 36.000 6.32 6.32 0.00 3.01
2454 3604 9.920946 AATAGGATTTAGGCTATTTGTTCAGAA 57.079 29.630 0.00 0.00 0.00 3.02
2455 3605 9.561069 GAATAGGATTTAGGCTATTTGTTCAGA 57.439 33.333 0.00 0.00 0.00 3.27
2484 3646 2.093658 TCCAGAAATACTTGTCGGAGGC 60.094 50.000 0.00 0.00 0.00 4.70
2485 3647 3.522553 GTCCAGAAATACTTGTCGGAGG 58.477 50.000 0.00 0.00 0.00 4.30
2502 3664 0.539986 GCCAGTATTTCCTCCGTCCA 59.460 55.000 0.00 0.00 0.00 4.02
2521 3684 3.753272 ACAAACCAGTAGCTGCATTACTG 59.247 43.478 22.40 22.40 44.79 2.74
2548 3723 1.228657 GGTTGCACTTGACTCGGGTC 61.229 60.000 8.99 8.99 42.42 4.46
2550 3725 0.817634 TTGGTTGCACTTGACTCGGG 60.818 55.000 0.00 0.00 0.00 5.14
2561 3736 6.586344 TCCTTTGTCAAAAATATTGGTTGCA 58.414 32.000 0.00 0.00 0.00 4.08
2571 3746 6.711645 CACAAATCCCATCCTTTGTCAAAAAT 59.288 34.615 0.00 0.00 42.16 1.82
2574 3749 4.898265 TCACAAATCCCATCCTTTGTCAAA 59.102 37.500 0.00 0.00 42.16 2.69
2576 3751 4.111255 TCACAAATCCCATCCTTTGTCA 57.889 40.909 0.00 0.00 42.16 3.58
2585 3760 5.231702 ACAAAATGCTTCACAAATCCCAT 57.768 34.783 0.00 0.00 0.00 4.00
2589 3764 6.865205 AGCTAGAACAAAATGCTTCACAAATC 59.135 34.615 0.00 0.00 0.00 2.17
2601 3776 9.425577 GTACAGTAAGAGAAGCTAGAACAAAAT 57.574 33.333 0.00 0.00 0.00 1.82
2603 3778 8.082852 CAGTACAGTAAGAGAAGCTAGAACAAA 58.917 37.037 0.00 0.00 0.00 2.83
2607 3782 7.881751 TGTACAGTACAGTAAGAGAAGCTAGAA 59.118 37.037 9.51 0.00 34.06 2.10
2632 3807 0.251297 TCTGGGCATGGACAACCTTG 60.251 55.000 0.00 0.00 42.12 3.61
2647 3822 5.409826 GTGAACTAACCACTGAAGAATCTGG 59.590 44.000 0.00 0.00 0.00 3.86
2661 3836 4.327680 AGCTCCTTTCATGTGAACTAACC 58.672 43.478 0.00 0.00 33.13 2.85
2701 3876 4.299586 TGCATCTTGTTGTCCCAATCTA 57.700 40.909 0.00 0.00 0.00 1.98
2705 3880 2.596346 ACATGCATCTTGTTGTCCCAA 58.404 42.857 0.00 0.00 0.00 4.12
2706 3881 2.291209 ACATGCATCTTGTTGTCCCA 57.709 45.000 0.00 0.00 0.00 4.37
2711 3886 7.709947 AGGATACATTTACATGCATCTTGTTG 58.290 34.615 0.00 0.00 34.59 3.33
2747 3923 8.592155 CATGTAAGAAATGACAAATTGATGCTG 58.408 33.333 0.00 0.00 0.00 4.41
2749 3925 8.692110 TCATGTAAGAAATGACAAATTGATGC 57.308 30.769 0.00 0.00 0.00 3.91
2770 3946 9.199982 GCCCACAAAAATAATAATGATCTCATG 57.800 33.333 0.00 0.00 36.56 3.07
2771 3947 8.926374 TGCCCACAAAAATAATAATGATCTCAT 58.074 29.630 0.00 0.00 38.41 2.90
2772 3948 8.303780 TGCCCACAAAAATAATAATGATCTCA 57.696 30.769 0.00 0.00 0.00 3.27
2773 3949 9.598517 TTTGCCCACAAAAATAATAATGATCTC 57.401 29.630 0.00 0.00 42.73 2.75
2774 3950 9.603921 CTTTGCCCACAAAAATAATAATGATCT 57.396 29.630 0.00 0.00 44.90 2.75
2775 3951 8.337532 GCTTTGCCCACAAAAATAATAATGATC 58.662 33.333 0.00 0.00 44.90 2.92
2776 3952 8.048514 AGCTTTGCCCACAAAAATAATAATGAT 58.951 29.630 0.00 0.00 44.90 2.45
2777 3953 7.333921 CAGCTTTGCCCACAAAAATAATAATGA 59.666 33.333 0.00 0.00 44.90 2.57
2778 3954 7.414319 CCAGCTTTGCCCACAAAAATAATAATG 60.414 37.037 0.00 0.00 44.90 1.90
2779 3955 6.598850 CCAGCTTTGCCCACAAAAATAATAAT 59.401 34.615 0.00 0.00 44.90 1.28
2780 3956 5.936956 CCAGCTTTGCCCACAAAAATAATAA 59.063 36.000 0.00 0.00 44.90 1.40
2781 3957 5.247110 TCCAGCTTTGCCCACAAAAATAATA 59.753 36.000 0.00 0.00 44.90 0.98
2782 3958 4.041444 TCCAGCTTTGCCCACAAAAATAAT 59.959 37.500 0.00 0.00 44.90 1.28
2827 4003 1.673337 GCGGAGTAGCGGGGTTTTT 60.673 57.895 0.00 0.00 0.00 1.94
2839 4015 3.063084 GAGGGAGTGACGCGGAGT 61.063 66.667 12.47 0.00 36.53 3.85
2863 4039 2.573609 ATCTAGGGTTCCGTGCGTGC 62.574 60.000 0.00 0.00 0.00 5.34
2868 4044 2.928116 GTTTTCGATCTAGGGTTCCGTG 59.072 50.000 0.00 0.00 0.00 4.94
2869 4045 2.564062 TGTTTTCGATCTAGGGTTCCGT 59.436 45.455 0.00 0.00 0.00 4.69
2870 4046 3.187700 CTGTTTTCGATCTAGGGTTCCG 58.812 50.000 0.00 0.00 0.00 4.30
2898 4074 3.157949 GAGGAGAAGGAGGGGCGG 61.158 72.222 0.00 0.00 0.00 6.13
2900 4076 2.770475 GGGAGGAGAAGGAGGGGC 60.770 72.222 0.00 0.00 0.00 5.80
2901 4077 2.040359 GGGGAGGAGAAGGAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
2902 4078 1.074850 GAGGGGAGGAGAAGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
2903 4079 1.456705 CGAGGGGAGGAGAAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
2904 4080 2.131067 GCGAGGGGAGGAGAAGGAG 61.131 68.421 0.00 0.00 0.00 3.69
2905 4081 2.042843 GCGAGGGGAGGAGAAGGA 60.043 66.667 0.00 0.00 0.00 3.36
2906 4082 3.157949 GGCGAGGGGAGGAGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
2907 4083 3.532155 CGGCGAGGGGAGGAGAAG 61.532 72.222 0.00 0.00 0.00 2.85
2918 4094 4.637489 CTCTCCATCGGCGGCGAG 62.637 72.222 36.74 26.84 31.86 5.03
2925 4101 4.933064 GGCGACGCTCTCCATCGG 62.933 72.222 20.77 0.00 36.37 4.18
2974 4150 3.978571 GAACGAAGGAGGGCAGCCC 62.979 68.421 24.90 24.90 45.90 5.19
2975 4151 2.436824 GAACGAAGGAGGGCAGCC 60.437 66.667 1.26 1.26 0.00 4.85
2976 4152 2.436824 GGAACGAAGGAGGGCAGC 60.437 66.667 0.00 0.00 0.00 5.25
2977 4153 2.269241 GGGAACGAAGGAGGGCAG 59.731 66.667 0.00 0.00 0.00 4.85
3002 4178 3.479269 GTCGACGCCAAGCCTTCG 61.479 66.667 0.00 0.11 33.60 3.79
3003 4179 2.357034 TGTCGACGCCAAGCCTTC 60.357 61.111 11.62 0.00 0.00 3.46
3004 4180 2.665185 GTGTCGACGCCAAGCCTT 60.665 61.111 18.36 0.00 0.00 4.35
3041 4217 3.372730 CAACCCCATGTGCCCACG 61.373 66.667 0.00 0.00 0.00 4.94
3042 4218 3.694538 GCAACCCCATGTGCCCAC 61.695 66.667 0.00 0.00 0.00 4.61
3043 4219 3.913445 AGCAACCCCATGTGCCCA 61.913 61.111 2.63 0.00 0.00 5.36
3044 4220 3.384532 CAGCAACCCCATGTGCCC 61.385 66.667 2.63 0.00 0.00 5.36
3045 4221 4.073200 GCAGCAACCCCATGTGCC 62.073 66.667 2.63 0.00 0.00 5.01
3046 4222 4.424566 CGCAGCAACCCCATGTGC 62.425 66.667 0.00 0.00 0.00 4.57
3047 4223 3.751246 CCGCAGCAACCCCATGTG 61.751 66.667 0.00 0.00 0.00 3.21
3048 4224 4.284550 ACCGCAGCAACCCCATGT 62.285 61.111 0.00 0.00 0.00 3.21
3049 4225 3.751246 CACCGCAGCAACCCCATG 61.751 66.667 0.00 0.00 0.00 3.66
3077 4253 4.612536 CATCGAAATGGCCGCCGC 62.613 66.667 4.58 0.00 0.00 6.53
3078 4254 3.952675 CCATCGAAATGGCCGCCG 61.953 66.667 4.58 0.00 45.88 6.46
3085 4261 0.040692 CGCATCAGCCCATCGAAATG 60.041 55.000 0.00 0.00 37.52 2.32
3086 4262 1.789078 GCGCATCAGCCCATCGAAAT 61.789 55.000 0.30 0.00 37.52 2.17
3087 4263 2.472059 GCGCATCAGCCCATCGAAA 61.472 57.895 0.30 0.00 37.52 3.46
3088 4264 2.874648 AAGCGCATCAGCCCATCGAA 62.875 55.000 11.47 0.00 37.52 3.71
3089 4265 3.390183 AAGCGCATCAGCCCATCGA 62.390 57.895 11.47 0.00 37.52 3.59
3090 4266 2.890109 GAAGCGCATCAGCCCATCG 61.890 63.158 11.47 0.00 37.52 3.84
3091 4267 1.378882 TTGAAGCGCATCAGCCCATC 61.379 55.000 15.58 0.00 37.52 3.51
3092 4268 1.378911 TTGAAGCGCATCAGCCCAT 60.379 52.632 15.58 0.00 37.52 4.00
3093 4269 2.033911 TTGAAGCGCATCAGCCCA 59.966 55.556 15.58 0.00 37.52 5.36
3094 4270 2.486966 GTTGAAGCGCATCAGCCC 59.513 61.111 17.24 5.85 37.52 5.19
3095 4271 2.099062 CGTTGAAGCGCATCAGCC 59.901 61.111 21.11 12.70 37.52 4.85
3096 4272 2.099062 CCGTTGAAGCGCATCAGC 59.901 61.111 17.94 17.94 37.42 4.26
3097 4273 1.133253 CACCGTTGAAGCGCATCAG 59.867 57.895 15.58 7.10 0.00 2.90
3098 4274 2.324330 CCACCGTTGAAGCGCATCA 61.324 57.895 11.93 11.93 0.00 3.07
3099 4275 2.480555 CCACCGTTGAAGCGCATC 59.519 61.111 11.47 8.28 0.00 3.91
3100 4276 3.737172 GCCACCGTTGAAGCGCAT 61.737 61.111 11.47 0.00 0.00 4.73
3104 4280 3.423154 CTCCGCCACCGTTGAAGC 61.423 66.667 0.00 0.00 0.00 3.86
3105 4281 2.742372 CCTCCGCCACCGTTGAAG 60.742 66.667 0.00 0.00 0.00 3.02
3106 4282 4.323477 CCCTCCGCCACCGTTGAA 62.323 66.667 0.00 0.00 0.00 2.69
3121 4297 4.432741 GGCCACCAGAGGAAGCCC 62.433 72.222 0.00 0.00 38.05 5.19
3122 4298 4.785453 CGGCCACCAGAGGAAGCC 62.785 72.222 2.24 9.91 39.65 4.35
3124 4300 3.335356 ATGCGGCCACCAGAGGAAG 62.335 63.158 2.24 0.00 0.00 3.46
3125 4301 3.329889 ATGCGGCCACCAGAGGAA 61.330 61.111 2.24 0.00 0.00 3.36
3126 4302 4.100084 CATGCGGCCACCAGAGGA 62.100 66.667 2.24 0.00 0.00 3.71
3128 4304 4.790962 AGCATGCGGCCACCAGAG 62.791 66.667 13.01 0.00 46.50 3.35
3129 4305 4.783621 GAGCATGCGGCCACCAGA 62.784 66.667 13.01 0.00 46.50 3.86
3130 4306 4.790962 AGAGCATGCGGCCACCAG 62.791 66.667 13.01 0.00 46.50 4.00
3131 4307 4.783621 GAGAGCATGCGGCCACCA 62.784 66.667 13.01 0.00 46.50 4.17
3133 4309 4.479993 AGGAGAGCATGCGGCCAC 62.480 66.667 22.54 11.35 46.50 5.01
3134 4310 4.478371 CAGGAGAGCATGCGGCCA 62.478 66.667 22.54 0.00 46.50 5.36
3135 4311 4.166888 TCAGGAGAGCATGCGGCC 62.167 66.667 13.01 14.69 46.50 6.13
3136 4312 2.588314 CTCAGGAGAGCATGCGGC 60.588 66.667 13.01 8.84 45.30 6.53
3144 4320 0.667993 GAGATCCACGCTCAGGAGAG 59.332 60.000 0.00 0.00 44.96 3.20
3145 4321 0.257328 AGAGATCCACGCTCAGGAGA 59.743 55.000 0.00 0.00 38.83 3.71
3146 4322 0.385029 CAGAGATCCACGCTCAGGAG 59.615 60.000 0.00 0.00 38.83 3.69
3147 4323 1.670949 GCAGAGATCCACGCTCAGGA 61.671 60.000 0.00 0.00 39.97 3.86
3148 4324 1.227205 GCAGAGATCCACGCTCAGG 60.227 63.158 0.00 0.00 34.85 3.86
3149 4325 1.227205 GGCAGAGATCCACGCTCAG 60.227 63.158 0.00 0.00 34.85 3.35
3150 4326 2.895680 GGCAGAGATCCACGCTCA 59.104 61.111 0.00 0.00 34.85 4.26
3151 4327 2.279120 CGGCAGAGATCCACGCTC 60.279 66.667 0.00 0.00 0.00 5.03
3152 4328 3.842923 CCGGCAGAGATCCACGCT 61.843 66.667 0.00 0.00 0.00 5.07
3155 4331 4.899239 CCGCCGGCAGAGATCCAC 62.899 72.222 28.98 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.