Multiple sequence alignment - TraesCS7B01G039900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G039900 chr7B 100.000 4281 0 0 1 4281 40180047 40184327 0.000000e+00 7906.0
1 TraesCS7B01G039900 chr7B 82.524 721 114 7 1230 1943 40292922 40293637 1.310000e-174 623.0
2 TraesCS7B01G039900 chr7B 79.146 609 89 28 1980 2566 40294762 40295354 1.870000e-103 387.0
3 TraesCS7B01G039900 chr7B 94.521 73 4 0 2961 3033 40295383 40295455 3.500000e-21 113.0
4 TraesCS7B01G039900 chr7B 85.484 62 9 0 4035 4096 726612891 726612830 9.940000e-07 65.8
5 TraesCS7B01G039900 chr7A 88.783 2942 191 61 678 3550 90453531 90456402 0.000000e+00 3476.0
6 TraesCS7B01G039900 chr7A 84.530 627 89 5 1230 1849 90487264 90487889 7.870000e-172 614.0
7 TraesCS7B01G039900 chr7A 85.357 560 67 8 2635 3194 368538163 368538707 2.230000e-157 566.0
8 TraesCS7B01G039900 chr7A 87.041 463 41 8 118 568 90453039 90453494 4.940000e-139 505.0
9 TraesCS7B01G039900 chr7A 90.645 310 26 2 1732 2041 368537277 368537583 3.980000e-110 409.0
10 TraesCS7B01G039900 chr7A 80.925 519 59 19 2071 2566 90487985 90488486 1.450000e-99 374.0
11 TraesCS7B01G039900 chr7A 90.058 171 16 1 4111 4281 90457390 90457559 2.000000e-53 220.0
12 TraesCS7B01G039900 chr7A 94.118 102 4 2 598 699 20732923 20733022 2.060000e-33 154.0
13 TraesCS7B01G039900 chr7A 88.889 81 7 2 2561 2640 90488427 90488506 9.800000e-17 99.0
14 TraesCS7B01G039900 chr7D 93.176 2286 106 22 927 3194 89274043 89276296 0.000000e+00 3312.0
15 TraesCS7B01G039900 chr7D 87.529 850 69 21 3190 4005 89276327 89277173 0.000000e+00 948.0
16 TraesCS7B01G039900 chr7D 81.721 1127 175 22 1266 2374 89473632 89474745 0.000000e+00 911.0
17 TraesCS7B01G039900 chr7D 80.000 1285 166 55 1443 2647 89280401 89281674 0.000000e+00 865.0
18 TraesCS7B01G039900 chr7D 88.378 370 32 5 121 488 89268032 89268392 6.570000e-118 435.0
19 TraesCS7B01G039900 chr7D 82.479 468 56 14 986 1450 89278714 89279158 1.870000e-103 387.0
20 TraesCS7B01G039900 chr7D 96.364 110 3 1 718 827 89273873 89273981 3.400000e-41 180.0
21 TraesCS7B01G039900 chr7D 90.517 116 4 7 580 691 26757802 26757914 3.450000e-31 147.0
22 TraesCS7B01G039900 chr7D 85.507 138 20 0 2961 3098 89475009 89475146 1.240000e-30 145.0
23 TraesCS7B01G039900 chr7D 78.776 245 24 17 2592 2811 89275821 89276062 5.770000e-29 139.0
24 TraesCS7B01G039900 chr7D 90.099 101 8 1 33 133 341623073 341623171 3.470000e-26 130.0
25 TraesCS7B01G039900 chr7D 96.970 33 1 0 4016 4048 459384052 459384084 5.980000e-04 56.5
26 TraesCS7B01G039900 chrUn 88.717 1418 73 31 1785 3182 30439657 30438307 0.000000e+00 1652.0
27 TraesCS7B01G039900 chrUn 93.540 743 30 6 1001 1738 30440802 30440073 0.000000e+00 1090.0
28 TraesCS7B01G039900 chrUn 80.635 1291 181 43 998 2253 30433191 30431935 0.000000e+00 935.0
29 TraesCS7B01G039900 chr5A 80.298 1274 185 40 1013 2253 666944762 666943522 0.000000e+00 902.0
30 TraesCS7B01G039900 chr5A 81.818 286 37 9 2252 2536 666943484 666943213 4.310000e-55 226.0
31 TraesCS7B01G039900 chr5A 90.099 101 8 1 33 133 90668441 90668343 3.470000e-26 130.0
32 TraesCS7B01G039900 chr5A 90.099 101 8 1 33 133 155735562 155735660 3.470000e-26 130.0
33 TraesCS7B01G039900 chr5A 88.636 88 9 1 4012 4099 577765184 577765098 5.850000e-19 106.0
34 TraesCS7B01G039900 chr2B 85.588 791 74 25 2635 3401 711159952 711160726 0.000000e+00 793.0
35 TraesCS7B01G039900 chr2B 88.632 563 49 8 2635 3194 195926741 195926191 0.000000e+00 671.0
36 TraesCS7B01G039900 chr2B 88.022 359 34 5 1678 2035 711159026 711159376 2.380000e-112 416.0
37 TraesCS7B01G039900 chr2B 83.111 450 48 14 2081 2521 711159381 711159811 6.720000e-103 385.0
38 TraesCS7B01G039900 chr2B 90.610 213 19 1 3190 3401 195926160 195925948 9.060000e-72 281.0
39 TraesCS7B01G039900 chr2B 85.606 264 13 10 2264 2521 195927136 195926892 1.980000e-63 254.0
40 TraesCS7B01G039900 chr2B 89.247 186 12 5 3010 3194 790894068 790893890 4.310000e-55 226.0
41 TraesCS7B01G039900 chr2B 95.876 97 4 0 594 690 23730053 23730149 1.590000e-34 158.0
42 TraesCS7B01G039900 chr2B 77.637 237 28 11 2592 2804 195926661 195926426 2.090000e-23 121.0
43 TraesCS7B01G039900 chr2B 86.301 73 10 0 4028 4100 716537888 716537960 3.550000e-11 80.5
44 TraesCS7B01G039900 chr4A 79.004 843 133 29 1125 1942 648999070 648998247 1.750000e-148 536.0
45 TraesCS7B01G039900 chr4A 97.872 94 1 1 597 690 411853776 411853684 1.230000e-35 161.0
46 TraesCS7B01G039900 chr4A 88.333 120 14 0 2254 2373 649020793 649020674 1.240000e-30 145.0
47 TraesCS7B01G039900 chr4A 90.196 102 8 1 32 133 241152936 241153035 9.660000e-27 132.0
48 TraesCS7B01G039900 chr4A 90.099 101 8 1 33 133 253682193 253682291 3.470000e-26 130.0
49 TraesCS7B01G039900 chr4A 87.356 87 11 0 4011 4097 663651316 663651230 2.720000e-17 100.0
50 TraesCS7B01G039900 chr4A 81.915 94 17 0 4008 4101 603489807 603489714 3.550000e-11 80.5
51 TraesCS7B01G039900 chr3D 85.301 449 41 10 2079 2521 103678425 103678854 1.410000e-119 440.0
52 TraesCS7B01G039900 chr6D 92.000 275 20 2 2556 2829 277049954 277050227 6.720000e-103 385.0
53 TraesCS7B01G039900 chr3A 91.241 274 22 2 2556 2829 19634494 19634765 5.230000e-99 372.0
54 TraesCS7B01G039900 chr3A 96.939 98 3 0 595 692 391475379 391475476 9.520000e-37 165.0
55 TraesCS7B01G039900 chr2A 90.876 274 23 2 2556 2829 659737167 659737438 2.430000e-97 366.0
56 TraesCS7B01G039900 chr2A 98.913 92 1 0 605 696 695657153 695657062 9.520000e-37 165.0
57 TraesCS7B01G039900 chr2A 97.895 95 0 2 595 689 498195004 498194912 3.430000e-36 163.0
58 TraesCS7B01G039900 chr5D 97.872 94 0 2 597 689 46029434 46029342 1.230000e-35 161.0
59 TraesCS7B01G039900 chr5D 91.089 101 6 2 33 133 426250451 426250548 2.690000e-27 134.0
60 TraesCS7B01G039900 chr6B 95.000 100 3 2 598 697 349967643 349967740 5.730000e-34 156.0
61 TraesCS7B01G039900 chr5B 90.909 99 8 1 35 132 504177843 504177745 9.660000e-27 132.0
62 TraesCS7B01G039900 chr5B 85.057 87 9 4 4012 4096 41989703 41989787 7.630000e-13 86.1
63 TraesCS7B01G039900 chr4D 90.816 98 9 0 33 130 371926900 371926803 9.660000e-27 132.0
64 TraesCS7B01G039900 chr2D 90.196 102 9 1 32 132 108886669 108886568 9.660000e-27 132.0
65 TraesCS7B01G039900 chr6A 87.640 89 9 1 4011 4097 41606113 41606201 7.570000e-18 102.0
66 TraesCS7B01G039900 chr1A 85.714 91 12 1 4011 4101 448907024 448907113 1.270000e-15 95.3
67 TraesCS7B01G039900 chr4B 84.706 85 13 0 4012 4096 372825452 372825368 7.630000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G039900 chr7B 40180047 40184327 4280 False 7906.000000 7906 100.000000 1 4281 1 chr7B.!!$F1 4280
1 TraesCS7B01G039900 chr7B 40292922 40295455 2533 False 374.333333 623 85.397000 1230 3033 3 chr7B.!!$F2 1803
2 TraesCS7B01G039900 chr7A 90453039 90457559 4520 False 1400.333333 3476 88.627333 118 4281 3 chr7A.!!$F2 4163
3 TraesCS7B01G039900 chr7A 368537277 368538707 1430 False 487.500000 566 88.001000 1732 3194 2 chr7A.!!$F4 1462
4 TraesCS7B01G039900 chr7A 90487264 90488506 1242 False 362.333333 614 84.781333 1230 2640 3 chr7A.!!$F3 1410
5 TraesCS7B01G039900 chr7D 89273873 89281674 7801 False 971.833333 3312 86.387333 718 4005 6 chr7D.!!$F5 3287
6 TraesCS7B01G039900 chr7D 89473632 89475146 1514 False 528.000000 911 83.614000 1266 3098 2 chr7D.!!$F6 1832
7 TraesCS7B01G039900 chrUn 30438307 30440802 2495 True 1371.000000 1652 91.128500 1001 3182 2 chrUn.!!$R2 2181
8 TraesCS7B01G039900 chrUn 30431935 30433191 1256 True 935.000000 935 80.635000 998 2253 1 chrUn.!!$R1 1255
9 TraesCS7B01G039900 chr5A 666943213 666944762 1549 True 564.000000 902 81.058000 1013 2536 2 chr5A.!!$R3 1523
10 TraesCS7B01G039900 chr2B 711159026 711160726 1700 False 531.333333 793 85.573667 1678 3401 3 chr2B.!!$F3 1723
11 TraesCS7B01G039900 chr2B 195925948 195927136 1188 True 331.750000 671 85.621250 2264 3401 4 chr2B.!!$R2 1137
12 TraesCS7B01G039900 chr4A 648998247 648999070 823 True 536.000000 536 79.004000 1125 1942 1 chr4A.!!$R3 817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 579 0.034337 TTAACTCGGGCTCGCTGTTT 59.966 50.0 19.07 4.8 35.63 2.83 F
1912 2350 0.035439 AACATCACCGGGGTGTCATC 60.035 55.0 16.91 0.0 45.55 2.92 F
2453 4146 0.178938 TTGACATGGCAATGGTGGGT 60.179 50.0 10.79 0.0 38.19 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2559 4255 0.037882 TCAGCTTTCTGTCCAGCTCG 60.038 55.0 0.0 0.0 44.91 5.03 R
3156 5067 0.179111 TTGCAGATGGATCGACCGAC 60.179 55.0 0.0 0.0 42.61 4.79 R
3344 5304 0.326264 ACCCAGTTCAGATCACAGCC 59.674 55.0 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.900245 TTTTTGCCGGGAACTACTCC 58.100 50.000 8.37 0.00 44.54 3.85
47 48 2.502633 GGAACTACTCCCTCCGTCC 58.497 63.158 0.00 0.00 38.44 4.79
48 49 1.042003 GGAACTACTCCCTCCGTCCC 61.042 65.000 0.00 0.00 38.44 4.46
49 50 0.324091 GAACTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
50 51 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
51 52 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
52 53 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
53 54 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
54 55 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
55 56 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
56 57 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
57 58 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
58 59 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
59 60 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
60 61 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
61 62 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
62 63 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
63 64 4.813027 TCCGTCCCATAATATAAGAACGC 58.187 43.478 0.00 0.00 0.00 4.84
64 65 4.525487 TCCGTCCCATAATATAAGAACGCT 59.475 41.667 0.00 0.00 0.00 5.07
65 66 5.011329 TCCGTCCCATAATATAAGAACGCTT 59.989 40.000 0.00 0.00 38.15 4.68
66 67 5.699458 CCGTCCCATAATATAAGAACGCTTT 59.301 40.000 0.00 0.00 35.56 3.51
67 68 6.204108 CCGTCCCATAATATAAGAACGCTTTT 59.796 38.462 0.00 0.00 35.56 2.27
68 69 7.069569 CGTCCCATAATATAAGAACGCTTTTG 58.930 38.462 0.00 0.00 35.56 2.44
69 70 7.042321 CGTCCCATAATATAAGAACGCTTTTGA 60.042 37.037 0.00 0.00 35.56 2.69
70 71 8.068380 GTCCCATAATATAAGAACGCTTTTGAC 58.932 37.037 0.00 0.00 35.56 3.18
71 72 7.771361 TCCCATAATATAAGAACGCTTTTGACA 59.229 33.333 0.00 0.00 35.56 3.58
72 73 7.855904 CCCATAATATAAGAACGCTTTTGACAC 59.144 37.037 0.00 0.00 35.56 3.67
73 74 8.612619 CCATAATATAAGAACGCTTTTGACACT 58.387 33.333 0.00 0.00 35.56 3.55
77 78 9.988350 AATATAAGAACGCTTTTGACACTATTG 57.012 29.630 0.00 0.00 35.56 1.90
78 79 5.751243 AAGAACGCTTTTGACACTATTGT 57.249 34.783 0.00 0.00 39.32 2.71
79 80 6.854496 AAGAACGCTTTTGACACTATTGTA 57.146 33.333 0.00 0.00 35.47 2.41
80 81 6.224420 AGAACGCTTTTGACACTATTGTAC 57.776 37.500 0.00 0.00 35.47 2.90
81 82 5.989777 AGAACGCTTTTGACACTATTGTACT 59.010 36.000 0.00 0.00 35.47 2.73
82 83 5.591643 ACGCTTTTGACACTATTGTACTG 57.408 39.130 0.00 0.00 35.47 2.74
83 84 5.054477 ACGCTTTTGACACTATTGTACTGT 58.946 37.500 0.00 0.00 35.47 3.55
84 85 5.176958 ACGCTTTTGACACTATTGTACTGTC 59.823 40.000 5.48 5.48 35.47 3.51
85 86 5.176774 CGCTTTTGACACTATTGTACTGTCA 59.823 40.000 10.01 10.01 35.47 3.58
86 87 6.292649 CGCTTTTGACACTATTGTACTGTCAA 60.293 38.462 18.49 18.49 44.48 3.18
90 91 6.539649 TGACACTATTGTACTGTCAAAAGC 57.460 37.500 11.30 0.00 36.69 3.51
91 92 5.176774 TGACACTATTGTACTGTCAAAAGCG 59.823 40.000 11.30 0.00 36.69 4.68
92 93 4.084013 ACACTATTGTACTGTCAAAAGCGC 60.084 41.667 0.00 0.00 32.60 5.92
93 94 4.152402 CACTATTGTACTGTCAAAAGCGCT 59.848 41.667 2.64 2.64 0.00 5.92
94 95 3.813529 ATTGTACTGTCAAAAGCGCTC 57.186 42.857 12.06 0.00 0.00 5.03
95 96 2.526304 TGTACTGTCAAAAGCGCTCT 57.474 45.000 12.06 0.00 0.00 4.09
96 97 2.833794 TGTACTGTCAAAAGCGCTCTT 58.166 42.857 12.06 0.00 0.00 2.85
97 98 3.985008 TGTACTGTCAAAAGCGCTCTTA 58.015 40.909 12.06 0.00 31.02 2.10
98 99 4.566004 TGTACTGTCAAAAGCGCTCTTAT 58.434 39.130 12.06 0.00 31.02 1.73
99 100 5.716094 TGTACTGTCAAAAGCGCTCTTATA 58.284 37.500 12.06 0.00 31.02 0.98
100 101 6.338146 TGTACTGTCAAAAGCGCTCTTATAT 58.662 36.000 12.06 0.00 31.02 0.86
101 102 6.816640 TGTACTGTCAAAAGCGCTCTTATATT 59.183 34.615 12.06 0.00 31.02 1.28
102 103 6.743575 ACTGTCAAAAGCGCTCTTATATTT 57.256 33.333 12.06 2.98 31.02 1.40
103 104 7.145932 ACTGTCAAAAGCGCTCTTATATTTT 57.854 32.000 12.06 2.10 31.02 1.82
104 105 7.023575 ACTGTCAAAAGCGCTCTTATATTTTG 58.976 34.615 12.06 16.02 40.50 2.44
105 106 6.321717 TGTCAAAAGCGCTCTTATATTTTGG 58.678 36.000 21.76 5.63 39.90 3.28
106 107 5.743872 GTCAAAAGCGCTCTTATATTTTGGG 59.256 40.000 21.76 4.68 39.90 4.12
107 108 5.650266 TCAAAAGCGCTCTTATATTTTGGGA 59.350 36.000 21.76 7.05 39.90 4.37
108 109 5.500645 AAAGCGCTCTTATATTTTGGGAC 57.499 39.130 12.06 0.00 31.02 4.46
109 110 3.131396 AGCGCTCTTATATTTTGGGACG 58.869 45.455 2.64 0.00 0.00 4.79
110 111 2.223377 GCGCTCTTATATTTTGGGACGG 59.777 50.000 0.00 0.00 0.00 4.79
111 112 3.724374 CGCTCTTATATTTTGGGACGGA 58.276 45.455 0.00 0.00 0.00 4.69
112 113 3.741344 CGCTCTTATATTTTGGGACGGAG 59.259 47.826 0.00 0.00 0.00 4.63
113 114 4.065789 GCTCTTATATTTTGGGACGGAGG 58.934 47.826 0.00 0.00 0.00 4.30
114 115 4.642429 CTCTTATATTTTGGGACGGAGGG 58.358 47.826 0.00 0.00 0.00 4.30
115 116 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
116 117 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
126 127 5.763355 TGGGACGGAGGGAGTATTATATAG 58.237 45.833 0.00 0.00 0.00 1.31
138 139 7.760340 GGGAGTATTATATAGTTTTCTCCTGCG 59.240 40.741 15.89 0.00 39.77 5.18
157 158 0.456653 GCAAACAATAGGGTGCAGCG 60.457 55.000 10.24 0.00 36.97 5.18
203 204 5.088680 ACCCGTCGATGAAAGGTAAATTA 57.911 39.130 6.11 0.00 0.00 1.40
301 310 3.507162 TTTGGACATTTGAGGAGCTCA 57.493 42.857 17.19 0.00 38.87 4.26
304 313 2.573009 TGGACATTTGAGGAGCTCATGA 59.427 45.455 17.19 0.00 40.39 3.07
345 354 6.851330 GGTCTGTCAAAGTATCTTTCAAAACG 59.149 38.462 0.00 0.00 0.00 3.60
348 357 7.065324 TCTGTCAAAGTATCTTTCAAAACGTGT 59.935 33.333 0.00 0.00 0.00 4.49
351 360 8.333186 GTCAAAGTATCTTTCAAAACGTGTACT 58.667 33.333 0.00 0.00 0.00 2.73
354 363 8.876275 AAGTATCTTTCAAAACGTGTACTGTA 57.124 30.769 0.00 0.00 0.00 2.74
355 364 8.516811 AGTATCTTTCAAAACGTGTACTGTAG 57.483 34.615 0.00 0.00 0.00 2.74
357 366 6.817270 TCTTTCAAAACGTGTACTGTAGAC 57.183 37.500 5.11 5.11 0.00 2.59
358 367 5.750067 TCTTTCAAAACGTGTACTGTAGACC 59.250 40.000 9.24 0.00 0.00 3.85
359 368 3.631144 TCAAAACGTGTACTGTAGACCG 58.369 45.455 9.24 7.28 0.00 4.79
360 369 3.314913 TCAAAACGTGTACTGTAGACCGA 59.685 43.478 9.24 0.00 0.00 4.69
361 370 4.022935 TCAAAACGTGTACTGTAGACCGAT 60.023 41.667 9.24 0.00 0.00 4.18
362 371 4.510038 AAACGTGTACTGTAGACCGATT 57.490 40.909 9.24 3.91 0.00 3.34
363 372 4.510038 AACGTGTACTGTAGACCGATTT 57.490 40.909 9.24 0.00 0.00 2.17
396 405 0.901827 TGCCACGAGCTCCTCAAATA 59.098 50.000 8.47 0.00 44.23 1.40
408 417 6.012745 AGCTCCTCAAATATCCAAACACTTT 58.987 36.000 0.00 0.00 0.00 2.66
420 429 6.998968 TCCAAACACTTTGAAATTTTGCAT 57.001 29.167 0.00 0.00 43.26 3.96
422 431 6.373774 TCCAAACACTTTGAAATTTTGCATGT 59.626 30.769 0.00 0.00 43.26 3.21
434 443 9.023962 TGAAATTTTGCATGTACCTAGAAGATT 57.976 29.630 0.00 0.00 0.00 2.40
443 452 7.417342 GCATGTACCTAGAAGATTCTCTCAACT 60.417 40.741 0.00 0.00 38.70 3.16
447 456 7.546250 ACCTAGAAGATTCTCTCAACTTTCA 57.454 36.000 0.00 0.00 38.70 2.69
448 457 7.382898 ACCTAGAAGATTCTCTCAACTTTCAC 58.617 38.462 0.00 0.00 38.70 3.18
455 464 3.717707 TCTCTCAACTTTCACGGTGAAG 58.282 45.455 21.47 17.53 37.70 3.02
472 481 0.902516 AAGGAGCGAGCCTGACTTCT 60.903 55.000 0.00 0.00 38.58 2.85
478 487 0.457851 CGAGCCTGACTTCTAGGTGG 59.542 60.000 0.00 0.00 37.64 4.61
481 490 1.605058 GCCTGACTTCTAGGTGGCGA 61.605 60.000 0.00 0.00 37.64 5.54
498 508 7.506114 AGGTGGCGATGAAAGATATAAAACTA 58.494 34.615 0.00 0.00 0.00 2.24
517 527 7.865706 AAACTATGTATCCTTAACAAGCAGG 57.134 36.000 0.00 0.00 0.00 4.85
529 539 3.210232 ACAAGCAGGATCATGATGAGG 57.790 47.619 14.30 2.84 0.00 3.86
538 548 1.499368 TCATGATGAGGTGGCTAGCA 58.501 50.000 18.24 0.00 0.00 3.49
540 550 1.140452 CATGATGAGGTGGCTAGCAGT 59.860 52.381 18.24 0.00 0.00 4.40
557 567 0.713883 AGTGCACGCGAATTAACTCG 59.286 50.000 15.93 1.17 41.84 4.18
568 578 0.249398 ATTAACTCGGGCTCGCTGTT 59.751 50.000 18.21 18.21 36.95 3.16
569 579 0.034337 TTAACTCGGGCTCGCTGTTT 59.966 50.000 19.07 4.80 35.63 2.83
570 580 0.389426 TAACTCGGGCTCGCTGTTTC 60.389 55.000 19.07 0.00 35.63 2.78
571 581 2.815647 CTCGGGCTCGCTGTTTCC 60.816 66.667 0.00 0.00 36.13 3.13
573 583 2.668212 CGGGCTCGCTGTTTCCAA 60.668 61.111 0.00 0.00 0.00 3.53
574 584 2.954611 GGGCTCGCTGTTTCCAAC 59.045 61.111 0.00 0.00 0.00 3.77
575 585 2.626780 GGGCTCGCTGTTTCCAACC 61.627 63.158 0.00 0.00 0.00 3.77
576 586 2.626780 GGCTCGCTGTTTCCAACCC 61.627 63.158 0.00 0.00 0.00 4.11
577 587 1.896660 GCTCGCTGTTTCCAACCCA 60.897 57.895 0.00 0.00 0.00 4.51
578 588 1.452145 GCTCGCTGTTTCCAACCCAA 61.452 55.000 0.00 0.00 0.00 4.12
579 589 0.593128 CTCGCTGTTTCCAACCCAAG 59.407 55.000 0.00 0.00 0.00 3.61
580 590 0.106918 TCGCTGTTTCCAACCCAAGT 60.107 50.000 0.00 0.00 0.00 3.16
581 591 0.744281 CGCTGTTTCCAACCCAAGTT 59.256 50.000 0.00 0.00 36.33 2.66
590 600 2.886862 CAACCCAAGTTGTTGCATCA 57.113 45.000 1.45 0.00 46.88 3.07
591 601 2.746269 CAACCCAAGTTGTTGCATCAG 58.254 47.619 1.45 0.00 46.88 2.90
592 602 0.675633 ACCCAAGTTGTTGCATCAGC 59.324 50.000 1.45 3.61 42.57 4.26
593 603 0.037975 CCCAAGTTGTTGCATCAGCC 60.038 55.000 7.87 0.00 41.13 4.85
594 604 0.963962 CCAAGTTGTTGCATCAGCCT 59.036 50.000 7.87 1.41 41.13 4.58
595 605 1.336517 CCAAGTTGTTGCATCAGCCTG 60.337 52.381 7.87 5.76 41.13 4.85
598 608 3.354948 AGTTGTTGCATCAGCCTGATA 57.645 42.857 6.94 0.00 41.13 2.15
600 610 5.039920 AGTTGTTGCATCAGCCTGATATA 57.960 39.130 6.94 0.00 41.13 0.86
601 611 5.628130 AGTTGTTGCATCAGCCTGATATAT 58.372 37.500 6.94 0.00 41.13 0.86
602 612 5.472478 AGTTGTTGCATCAGCCTGATATATG 59.528 40.000 6.94 0.00 41.13 1.78
603 613 3.754850 TGTTGCATCAGCCTGATATATGC 59.245 43.478 6.94 8.94 42.52 3.14
604 614 3.994931 TGCATCAGCCTGATATATGCT 57.005 42.857 16.50 0.00 42.63 3.79
605 615 5.181009 GTTGCATCAGCCTGATATATGCTA 58.819 41.667 16.50 8.40 42.63 3.49
606 616 4.763073 TGCATCAGCCTGATATATGCTAC 58.237 43.478 16.50 0.00 42.63 3.58
607 617 4.468868 TGCATCAGCCTGATATATGCTACT 59.531 41.667 16.50 0.00 42.63 2.57
608 618 5.049167 GCATCAGCCTGATATATGCTACTC 58.951 45.833 6.94 0.00 39.80 2.59
609 619 5.599732 CATCAGCCTGATATATGCTACTCC 58.400 45.833 6.94 0.00 34.28 3.85
610 620 4.026744 TCAGCCTGATATATGCTACTCCC 58.973 47.826 0.00 0.00 33.16 4.30
611 621 4.029520 CAGCCTGATATATGCTACTCCCT 58.970 47.826 0.00 0.00 33.16 4.20
612 622 4.099266 CAGCCTGATATATGCTACTCCCTC 59.901 50.000 0.00 0.00 33.16 4.30
613 623 3.386402 GCCTGATATATGCTACTCCCTCC 59.614 52.174 0.00 0.00 0.00 4.30
614 624 3.634448 CCTGATATATGCTACTCCCTCCG 59.366 52.174 0.00 0.00 0.00 4.63
615 625 4.274147 CTGATATATGCTACTCCCTCCGT 58.726 47.826 0.00 0.00 0.00 4.69
616 626 5.437946 CTGATATATGCTACTCCCTCCGTA 58.562 45.833 0.00 0.00 0.00 4.02
617 627 5.823312 TGATATATGCTACTCCCTCCGTAA 58.177 41.667 0.00 0.00 0.00 3.18
618 628 6.250711 TGATATATGCTACTCCCTCCGTAAA 58.749 40.000 0.00 0.00 0.00 2.01
619 629 4.868314 ATATGCTACTCCCTCCGTAAAC 57.132 45.455 0.00 0.00 0.00 2.01
620 630 2.226962 TGCTACTCCCTCCGTAAACT 57.773 50.000 0.00 0.00 0.00 2.66
621 631 3.370840 TGCTACTCCCTCCGTAAACTA 57.629 47.619 0.00 0.00 0.00 2.24
622 632 3.700538 TGCTACTCCCTCCGTAAACTAA 58.299 45.455 0.00 0.00 0.00 2.24
623 633 4.284178 TGCTACTCCCTCCGTAAACTAAT 58.716 43.478 0.00 0.00 0.00 1.73
624 634 5.448654 TGCTACTCCCTCCGTAAACTAATA 58.551 41.667 0.00 0.00 0.00 0.98
625 635 6.073314 TGCTACTCCCTCCGTAAACTAATAT 58.927 40.000 0.00 0.00 0.00 1.28
626 636 7.233632 TGCTACTCCCTCCGTAAACTAATATA 58.766 38.462 0.00 0.00 0.00 0.86
627 637 7.725397 TGCTACTCCCTCCGTAAACTAATATAA 59.275 37.037 0.00 0.00 0.00 0.98
628 638 8.242739 GCTACTCCCTCCGTAAACTAATATAAG 58.757 40.741 0.00 0.00 0.00 1.73
629 639 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
630 640 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
631 641 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
632 642 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
633 643 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
634 644 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
635 645 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
701 711 5.123227 CAGAGGGAGTACAAGTTTTGTCAA 58.877 41.667 0.00 0.00 44.12 3.18
703 713 5.998363 AGAGGGAGTACAAGTTTTGTCAATC 59.002 40.000 0.00 0.00 44.12 2.67
708 718 6.912591 GGAGTACAAGTTTTGTCAATCAAGTG 59.087 38.462 0.00 0.00 44.12 3.16
709 719 6.265577 AGTACAAGTTTTGTCAATCAAGTGC 58.734 36.000 0.00 0.00 44.12 4.40
710 720 4.432712 ACAAGTTTTGTCAATCAAGTGCC 58.567 39.130 0.00 0.00 40.56 5.01
711 721 3.733443 AGTTTTGTCAATCAAGTGCCC 57.267 42.857 0.00 0.00 37.35 5.36
712 722 3.030291 AGTTTTGTCAATCAAGTGCCCA 58.970 40.909 0.00 0.00 37.35 5.36
713 723 3.642848 AGTTTTGTCAATCAAGTGCCCAT 59.357 39.130 0.00 0.00 37.35 4.00
714 724 4.101430 AGTTTTGTCAATCAAGTGCCCATT 59.899 37.500 0.00 0.00 37.35 3.16
715 725 4.686191 TTTGTCAATCAAGTGCCCATTT 57.314 36.364 0.00 0.00 37.35 2.32
716 726 3.940209 TGTCAATCAAGTGCCCATTTC 57.060 42.857 0.00 0.00 0.00 2.17
729 739 2.168313 GCCCATTTCGACCATTTCCATT 59.832 45.455 0.00 0.00 0.00 3.16
745 755 9.305925 CCATTTCCATTAAGTTTAAGAAGCATC 57.694 33.333 0.00 0.00 0.00 3.91
807 817 6.131961 AGCCAGCTCTATTAATGAAAACCAT 58.868 36.000 0.00 0.00 36.99 3.55
867 877 6.693978 TGCTTTAAGAAAAGTAAGCGGAAAAC 59.306 34.615 0.00 0.00 44.46 2.43
954 967 8.749499 CAAATTCAAGAATCAGTGACAAAGAAC 58.251 33.333 0.00 0.00 0.00 3.01
1072 1086 3.685139 TCTTTCTTGCCGTCTTGATCT 57.315 42.857 0.00 0.00 0.00 2.75
1081 1099 0.247460 CGTCTTGATCTCCAGCCACA 59.753 55.000 0.00 0.00 0.00 4.17
1098 1127 2.683933 ACACCCTCCTACCAGCGG 60.684 66.667 0.00 0.00 0.00 5.52
1099 1128 3.470888 CACCCTCCTACCAGCGGG 61.471 72.222 0.00 0.00 42.53 6.13
1100 1129 3.680196 ACCCTCCTACCAGCGGGA 61.680 66.667 10.86 0.00 39.08 5.14
1101 1130 2.840102 CCCTCCTACCAGCGGGAG 60.840 72.222 10.86 4.72 46.22 4.30
1268 1312 4.808238 GACGACGTCTCGGCCGAC 62.808 72.222 27.28 16.06 42.75 4.79
1462 1512 3.702048 CCACCCCTTCTTCGCCGA 61.702 66.667 0.00 0.00 0.00 5.54
1697 1760 2.763448 CAAGTTTGTCAAGGGGTGGAAA 59.237 45.455 0.00 0.00 0.00 3.13
1909 2347 1.674322 CCAACATCACCGGGGTGTC 60.674 63.158 16.91 0.00 45.55 3.67
1910 2348 1.072332 CAACATCACCGGGGTGTCA 59.928 57.895 16.91 0.00 45.55 3.58
1911 2349 0.322456 CAACATCACCGGGGTGTCAT 60.322 55.000 16.91 2.21 45.55 3.06
1912 2350 0.035439 AACATCACCGGGGTGTCATC 60.035 55.000 16.91 0.00 45.55 2.92
1913 2351 0.909610 ACATCACCGGGGTGTCATCT 60.910 55.000 16.91 0.00 45.55 2.90
1914 2352 0.179073 CATCACCGGGGTGTCATCTC 60.179 60.000 16.91 0.00 45.55 2.75
1915 2353 1.338136 ATCACCGGGGTGTCATCTCC 61.338 60.000 16.91 0.00 45.55 3.71
1916 2354 3.075005 ACCGGGGTGTCATCTCCG 61.075 66.667 6.32 6.72 41.90 4.63
1972 3534 5.898606 GCATTGTAGAATTCAGAACGATTCG 59.101 40.000 8.44 4.14 34.02 3.34
1989 3552 0.605319 TCGGGATGTTTGCTGTGGAC 60.605 55.000 0.00 0.00 0.00 4.02
2044 3640 2.688666 TCGCCATGGAGGAAGCCT 60.689 61.111 18.40 0.00 41.22 4.58
2045 3641 2.273449 CGCCATGGAGGAAGCCTT 59.727 61.111 18.40 0.00 41.22 4.35
2083 3685 1.068121 AGGGAAGGTGAAGGTGAAGG 58.932 55.000 0.00 0.00 0.00 3.46
2084 3686 0.771755 GGGAAGGTGAAGGTGAAGGT 59.228 55.000 0.00 0.00 0.00 3.50
2085 3687 1.545651 GGGAAGGTGAAGGTGAAGGTG 60.546 57.143 0.00 0.00 0.00 4.00
2086 3688 1.420138 GGAAGGTGAAGGTGAAGGTGA 59.580 52.381 0.00 0.00 0.00 4.02
2087 3689 2.158667 GGAAGGTGAAGGTGAAGGTGAA 60.159 50.000 0.00 0.00 0.00 3.18
2088 3690 2.938956 AGGTGAAGGTGAAGGTGAAG 57.061 50.000 0.00 0.00 0.00 3.02
2389 4078 1.006102 AGCTCCTTGTTCCGTGTCG 60.006 57.895 0.00 0.00 0.00 4.35
2422 4111 4.255833 TCTTGCATGATTTTGTTGGTCC 57.744 40.909 0.00 0.00 0.00 4.46
2448 4141 2.619646 TGATCGATTGACATGGCAATGG 59.380 45.455 31.33 28.28 38.53 3.16
2452 4145 1.137479 GATTGACATGGCAATGGTGGG 59.863 52.381 31.33 0.00 38.53 4.61
2453 4146 0.178938 TTGACATGGCAATGGTGGGT 60.179 50.000 10.79 0.00 38.19 4.51
2455 4148 0.247185 GACATGGCAATGGTGGGTTG 59.753 55.000 5.94 0.00 38.19 3.77
3204 5153 3.495193 CATGTTTCTGGACTGCATTTCG 58.505 45.455 0.00 0.00 0.00 3.46
3217 5166 1.591248 CATTTCGCACCTTCGTTTCG 58.409 50.000 0.00 0.00 0.00 3.46
3239 5188 4.618489 CGCAATTCACATGGAACTTCTTTC 59.382 41.667 0.00 0.00 38.60 2.62
3311 5271 6.697019 GGATTATGATCCGTCAAAAATGTTGG 59.303 38.462 0.00 0.00 42.36 3.77
3364 5324 1.555075 GGCTGTGATCTGAACTGGGTA 59.445 52.381 0.00 0.00 0.00 3.69
3390 5350 5.843673 TTTGTTTGGCAATGTTCTAGACA 57.156 34.783 0.00 0.00 43.71 3.41
3405 5366 5.140747 TCTAGACAAAGTTTCTCAGAGGC 57.859 43.478 0.00 0.00 0.00 4.70
3408 5369 4.384940 AGACAAAGTTTCTCAGAGGCTTC 58.615 43.478 0.00 0.00 0.00 3.86
3409 5370 3.134458 ACAAAGTTTCTCAGAGGCTTCG 58.866 45.455 0.00 0.00 0.00 3.79
3410 5371 3.134458 CAAAGTTTCTCAGAGGCTTCGT 58.866 45.455 0.00 0.00 0.00 3.85
3411 5372 2.447244 AGTTTCTCAGAGGCTTCGTG 57.553 50.000 0.00 0.00 0.00 4.35
3412 5373 1.689273 AGTTTCTCAGAGGCTTCGTGT 59.311 47.619 0.00 0.00 0.00 4.49
3413 5374 1.795286 GTTTCTCAGAGGCTTCGTGTG 59.205 52.381 0.00 0.00 0.00 3.82
3414 5375 1.328279 TTCTCAGAGGCTTCGTGTGA 58.672 50.000 0.00 0.00 0.00 3.58
3415 5376 1.550327 TCTCAGAGGCTTCGTGTGAT 58.450 50.000 0.00 0.00 0.00 3.06
3417 5378 3.089284 TCTCAGAGGCTTCGTGTGATTA 58.911 45.455 0.00 0.00 0.00 1.75
3418 5379 3.701542 TCTCAGAGGCTTCGTGTGATTAT 59.298 43.478 0.00 0.00 0.00 1.28
3420 5381 4.433615 TCAGAGGCTTCGTGTGATTATTC 58.566 43.478 0.00 0.00 0.00 1.75
3422 5383 4.269603 CAGAGGCTTCGTGTGATTATTCTG 59.730 45.833 0.00 0.00 0.00 3.02
3424 5385 2.677836 GGCTTCGTGTGATTATTCTGCA 59.322 45.455 0.00 0.00 0.00 4.41
3425 5386 3.126858 GGCTTCGTGTGATTATTCTGCAA 59.873 43.478 0.00 0.00 0.00 4.08
3426 5387 4.091424 GCTTCGTGTGATTATTCTGCAAC 58.909 43.478 0.00 0.00 0.00 4.17
3427 5388 4.142816 GCTTCGTGTGATTATTCTGCAACT 60.143 41.667 0.00 0.00 0.00 3.16
3428 5389 5.617751 GCTTCGTGTGATTATTCTGCAACTT 60.618 40.000 0.00 0.00 0.00 2.66
3429 5390 5.940192 TCGTGTGATTATTCTGCAACTTT 57.060 34.783 0.00 0.00 0.00 2.66
3431 5392 6.827641 TCGTGTGATTATTCTGCAACTTTAC 58.172 36.000 0.00 0.00 0.00 2.01
3432 5393 6.649141 TCGTGTGATTATTCTGCAACTTTACT 59.351 34.615 0.00 0.00 0.00 2.24
3433 5394 6.738200 CGTGTGATTATTCTGCAACTTTACTG 59.262 38.462 0.00 0.00 0.00 2.74
3434 5395 7.023575 GTGTGATTATTCTGCAACTTTACTGG 58.976 38.462 0.00 0.00 0.00 4.00
3435 5396 6.150976 TGTGATTATTCTGCAACTTTACTGGG 59.849 38.462 0.00 0.00 0.00 4.45
3436 5397 5.125417 TGATTATTCTGCAACTTTACTGGGC 59.875 40.000 0.00 0.00 0.00 5.36
3438 5399 2.356665 TCTGCAACTTTACTGGGCAA 57.643 45.000 0.00 0.00 33.58 4.52
3439 5400 1.953686 TCTGCAACTTTACTGGGCAAC 59.046 47.619 0.00 0.00 33.58 4.17
3453 5438 4.201980 ACTGGGCAACTCGTAAAGAAAAAC 60.202 41.667 0.00 0.00 0.00 2.43
3456 5441 4.202080 GGGCAACTCGTAAAGAAAAACCTT 60.202 41.667 0.00 0.00 0.00 3.50
3470 5455 5.826208 AGAAAAACCTTAACGACAGACCAAT 59.174 36.000 0.00 0.00 0.00 3.16
3474 5459 3.195661 CCTTAACGACAGACCAATAGCC 58.804 50.000 0.00 0.00 0.00 3.93
3504 5489 4.102681 ACTCTCCCCCAATTTACCTATTCG 59.897 45.833 0.00 0.00 0.00 3.34
3507 5492 1.877443 CCCCAATTTACCTATTCGGCG 59.123 52.381 0.00 0.00 35.61 6.46
3599 6072 3.756082 TGCATAACCCATCTTTTCCCT 57.244 42.857 0.00 0.00 0.00 4.20
3602 6075 3.381590 GCATAACCCATCTTTTCCCTCAC 59.618 47.826 0.00 0.00 0.00 3.51
3653 6128 2.947652 GTGCAGTTCTACATGGCATGAT 59.052 45.455 32.74 18.87 36.79 2.45
3717 6192 5.808366 AGGATGTATTATTGAGCCTCGAA 57.192 39.130 0.00 0.00 0.00 3.71
3745 6220 9.680315 GCGAGTATGTATAGAGTACAAGATTTT 57.320 33.333 0.00 0.00 0.00 1.82
3772 6247 8.975295 AAAAAGCATGAAGCCTTTTAGAGATAT 58.025 29.630 0.00 0.00 43.23 1.63
3821 6296 3.309954 GGCAATCTCTAACACGGTGAATC 59.690 47.826 16.29 0.00 0.00 2.52
3841 6316 8.345565 GTGAATCCCAACAATGTATGAAGTATC 58.654 37.037 0.00 0.00 0.00 2.24
3865 6340 8.675705 TCAATGAGAAACTGATGAAGTAAACA 57.324 30.769 0.00 0.00 38.56 2.83
3873 6348 8.682936 AAACTGATGAAGTAAACACATCTCTT 57.317 30.769 15.72 8.29 38.56 2.85
3985 6498 2.736670 AGGTCATTGGAACATAGGGC 57.263 50.000 0.00 0.00 39.30 5.19
4017 6530 5.921408 CAGGTTAGCGACTATTGATACTTCC 59.079 44.000 0.00 0.00 0.00 3.46
4018 6531 5.834204 AGGTTAGCGACTATTGATACTTCCT 59.166 40.000 0.00 0.00 0.00 3.36
4021 6534 5.446143 AGCGACTATTGATACTTCCTCTG 57.554 43.478 0.00 0.00 0.00 3.35
4022 6535 4.890581 AGCGACTATTGATACTTCCTCTGT 59.109 41.667 0.00 0.00 0.00 3.41
4023 6536 6.062749 AGCGACTATTGATACTTCCTCTGTA 58.937 40.000 0.00 0.00 0.00 2.74
4024 6537 6.546403 AGCGACTATTGATACTTCCTCTGTAA 59.454 38.462 0.00 0.00 0.00 2.41
4025 6538 6.858993 GCGACTATTGATACTTCCTCTGTAAG 59.141 42.308 0.00 0.00 0.00 2.34
4026 6539 7.255173 GCGACTATTGATACTTCCTCTGTAAGA 60.255 40.741 0.00 0.00 43.69 2.10
4027 6540 8.622157 CGACTATTGATACTTCCTCTGTAAGAA 58.378 37.037 0.00 0.00 46.34 2.52
4092 6605 9.832445 ATGCTTTTATATTTCTTTACGGAGAGA 57.168 29.630 0.00 0.00 0.00 3.10
4093 6606 9.314321 TGCTTTTATATTTCTTTACGGAGAGAG 57.686 33.333 0.00 0.00 0.00 3.20
4094 6607 9.315525 GCTTTTATATTTCTTTACGGAGAGAGT 57.684 33.333 0.00 0.00 0.00 3.24
4100 6613 9.751542 ATATTTCTTTACGGAGAGAGTATGTTG 57.248 33.333 0.00 0.00 0.00 3.33
4101 6614 6.829229 TTCTTTACGGAGAGAGTATGTTGA 57.171 37.500 0.00 0.00 0.00 3.18
4102 6615 6.829229 TCTTTACGGAGAGAGTATGTTGAA 57.171 37.500 0.00 0.00 0.00 2.69
4103 6616 7.223260 TCTTTACGGAGAGAGTATGTTGAAA 57.777 36.000 0.00 0.00 0.00 2.69
4104 6617 7.088905 TCTTTACGGAGAGAGTATGTTGAAAC 58.911 38.462 0.00 0.00 0.00 2.78
4105 6618 4.189639 ACGGAGAGAGTATGTTGAAACC 57.810 45.455 0.00 0.00 0.00 3.27
4106 6619 3.179830 CGGAGAGAGTATGTTGAAACCG 58.820 50.000 0.00 0.00 0.00 4.44
4107 6620 3.119602 CGGAGAGAGTATGTTGAAACCGA 60.120 47.826 0.00 0.00 39.11 4.69
4108 6621 4.440250 CGGAGAGAGTATGTTGAAACCGAT 60.440 45.833 0.00 0.00 39.11 4.18
4125 6638 4.264253 ACCGATTCACACACAATGATCAT 58.736 39.130 1.18 1.18 0.00 2.45
4129 6642 5.163733 CGATTCACACACAATGATCATCCAA 60.164 40.000 9.06 0.00 0.00 3.53
4141 6654 9.872684 ACAATGATCATCCAAAGGACTAATAAT 57.127 29.630 9.06 0.00 32.98 1.28
4231 6942 6.092955 TGTGAGTGAACCGAACTTAATAGT 57.907 37.500 0.00 0.00 35.68 2.12
4233 6944 5.575995 GTGAGTGAACCGAACTTAATAGTCC 59.424 44.000 0.00 0.00 31.99 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.900245 GGAGTAGTTCCCGGCAAAAA 58.100 50.000 0.00 0.00 40.37 1.94
21 22 3.637184 GGAGTAGTTCCCGGCAAAA 57.363 52.632 0.00 0.00 40.37 2.44
29 30 1.042003 GGGACGGAGGGAGTAGTTCC 61.042 65.000 0.00 0.00 46.00 3.62
30 31 0.324091 TGGGACGGAGGGAGTAGTTC 60.324 60.000 0.00 0.00 0.00 3.01
31 32 0.338814 ATGGGACGGAGGGAGTAGTT 59.661 55.000 0.00 0.00 0.00 2.24
32 33 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
33 34 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
34 35 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
35 36 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
36 37 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
37 38 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
38 39 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
39 40 5.408356 CGTTCTTATATTATGGGACGGAGG 58.592 45.833 0.00 0.00 0.00 4.30
40 41 4.863131 GCGTTCTTATATTATGGGACGGAG 59.137 45.833 11.52 0.00 0.00 4.63
41 42 4.525487 AGCGTTCTTATATTATGGGACGGA 59.475 41.667 11.52 0.00 0.00 4.69
42 43 4.817517 AGCGTTCTTATATTATGGGACGG 58.182 43.478 11.52 0.00 0.00 4.79
43 44 6.780706 AAAGCGTTCTTATATTATGGGACG 57.219 37.500 7.50 7.50 31.02 4.79
44 45 8.068380 GTCAAAAGCGTTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 31.02 4.46
45 46 7.771361 TGTCAAAAGCGTTCTTATATTATGGGA 59.229 33.333 0.00 0.00 31.02 4.37
46 47 7.855904 GTGTCAAAAGCGTTCTTATATTATGGG 59.144 37.037 0.00 0.00 31.02 4.00
47 48 8.612619 AGTGTCAAAAGCGTTCTTATATTATGG 58.387 33.333 0.00 0.00 31.02 2.74
51 52 9.988350 CAATAGTGTCAAAAGCGTTCTTATATT 57.012 29.630 0.00 0.00 31.02 1.28
52 53 9.162764 ACAATAGTGTCAAAAGCGTTCTTATAT 57.837 29.630 0.00 0.00 29.49 0.86
53 54 8.542497 ACAATAGTGTCAAAAGCGTTCTTATA 57.458 30.769 0.00 0.00 29.49 0.98
54 55 7.435068 ACAATAGTGTCAAAAGCGTTCTTAT 57.565 32.000 0.00 0.00 29.49 1.73
55 56 6.854496 ACAATAGTGTCAAAAGCGTTCTTA 57.146 33.333 0.00 0.00 29.49 2.10
56 57 5.751243 ACAATAGTGTCAAAAGCGTTCTT 57.249 34.783 0.00 0.00 29.49 2.52
57 58 5.989777 AGTACAATAGTGTCAAAAGCGTTCT 59.010 36.000 0.00 0.00 39.30 3.01
58 59 6.071463 CAGTACAATAGTGTCAAAAGCGTTC 58.929 40.000 0.00 0.00 39.30 3.95
59 60 5.526111 ACAGTACAATAGTGTCAAAAGCGTT 59.474 36.000 0.00 0.00 37.83 4.84
60 61 5.054477 ACAGTACAATAGTGTCAAAAGCGT 58.946 37.500 0.00 0.00 37.83 5.07
61 62 5.591643 ACAGTACAATAGTGTCAAAAGCG 57.408 39.130 0.00 0.00 37.83 4.68
69 70 4.084013 GCGCTTTTGACAGTACAATAGTGT 60.084 41.667 0.00 0.00 44.60 3.55
70 71 4.152402 AGCGCTTTTGACAGTACAATAGTG 59.848 41.667 2.64 0.00 39.97 2.74
71 72 4.315803 AGCGCTTTTGACAGTACAATAGT 58.684 39.130 2.64 0.00 33.61 2.12
72 73 4.627467 AGAGCGCTTTTGACAGTACAATAG 59.373 41.667 13.26 0.00 33.98 1.73
73 74 4.566004 AGAGCGCTTTTGACAGTACAATA 58.434 39.130 13.26 0.00 0.00 1.90
74 75 3.403038 AGAGCGCTTTTGACAGTACAAT 58.597 40.909 13.26 0.00 0.00 2.71
75 76 2.833794 AGAGCGCTTTTGACAGTACAA 58.166 42.857 13.26 0.00 0.00 2.41
76 77 2.526304 AGAGCGCTTTTGACAGTACA 57.474 45.000 13.26 0.00 0.00 2.90
77 78 6.830114 ATATAAGAGCGCTTTTGACAGTAC 57.170 37.500 22.35 0.08 35.56 2.73
78 79 7.843490 AAATATAAGAGCGCTTTTGACAGTA 57.157 32.000 22.35 2.21 35.56 2.74
79 80 6.743575 AAATATAAGAGCGCTTTTGACAGT 57.256 33.333 22.35 4.54 35.56 3.55
80 81 6.470235 CCAAAATATAAGAGCGCTTTTGACAG 59.530 38.462 22.35 6.22 38.46 3.51
81 82 6.321717 CCAAAATATAAGAGCGCTTTTGACA 58.678 36.000 22.35 8.10 38.46 3.58
82 83 5.743872 CCCAAAATATAAGAGCGCTTTTGAC 59.256 40.000 22.35 4.04 38.46 3.18
83 84 5.650266 TCCCAAAATATAAGAGCGCTTTTGA 59.350 36.000 22.35 11.00 38.46 2.69
84 85 5.743872 GTCCCAAAATATAAGAGCGCTTTTG 59.256 40.000 22.35 19.60 36.84 2.44
85 86 5.448632 CGTCCCAAAATATAAGAGCGCTTTT 60.449 40.000 17.98 17.98 35.56 2.27
86 87 4.035208 CGTCCCAAAATATAAGAGCGCTTT 59.965 41.667 13.26 1.42 35.56 3.51
87 88 3.560068 CGTCCCAAAATATAAGAGCGCTT 59.440 43.478 13.26 8.09 38.15 4.68
88 89 3.131396 CGTCCCAAAATATAAGAGCGCT 58.869 45.455 11.27 11.27 0.00 5.92
89 90 2.223377 CCGTCCCAAAATATAAGAGCGC 59.777 50.000 0.00 0.00 0.00 5.92
90 91 3.724374 TCCGTCCCAAAATATAAGAGCG 58.276 45.455 0.00 0.00 0.00 5.03
91 92 4.065789 CCTCCGTCCCAAAATATAAGAGC 58.934 47.826 0.00 0.00 0.00 4.09
92 93 4.347000 TCCCTCCGTCCCAAAATATAAGAG 59.653 45.833 0.00 0.00 0.00 2.85
93 94 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
94 95 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
95 96 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
96 97 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
97 98 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
98 99 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
99 100 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
100 101 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
101 102 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
102 103 2.852714 TAATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
103 104 4.687262 ATATAATACTCCCTCCGTCCCA 57.313 45.455 0.00 0.00 0.00 4.37
104 105 5.764432 ACTATATAATACTCCCTCCGTCCC 58.236 45.833 0.00 0.00 0.00 4.46
105 106 7.715266 AAACTATATAATACTCCCTCCGTCC 57.285 40.000 0.00 0.00 0.00 4.79
106 107 9.022884 AGAAAACTATATAATACTCCCTCCGTC 57.977 37.037 0.00 0.00 0.00 4.79
107 108 8.953223 AGAAAACTATATAATACTCCCTCCGT 57.047 34.615 0.00 0.00 0.00 4.69
108 109 8.468399 GGAGAAAACTATATAATACTCCCTCCG 58.532 40.741 0.00 0.00 37.34 4.63
109 110 9.549984 AGGAGAAAACTATATAATACTCCCTCC 57.450 37.037 0.00 0.00 42.20 4.30
111 112 8.817876 GCAGGAGAAAACTATATAATACTCCCT 58.182 37.037 0.00 0.00 42.20 4.20
112 113 7.760340 CGCAGGAGAAAACTATATAATACTCCC 59.240 40.741 0.00 0.00 42.20 4.30
113 114 7.275999 GCGCAGGAGAAAACTATATAATACTCC 59.724 40.741 0.30 0.00 41.74 3.85
114 115 7.813148 TGCGCAGGAGAAAACTATATAATACTC 59.187 37.037 5.66 0.00 0.00 2.59
115 116 7.667557 TGCGCAGGAGAAAACTATATAATACT 58.332 34.615 5.66 0.00 0.00 2.12
116 117 7.884816 TGCGCAGGAGAAAACTATATAATAC 57.115 36.000 5.66 0.00 0.00 1.89
126 127 2.202295 TTGTTTGCGCAGGAGAAAAC 57.798 45.000 11.31 11.92 33.98 2.43
138 139 0.456653 CGCTGCACCCTATTGTTTGC 60.457 55.000 0.00 0.00 35.45 3.68
157 158 1.079503 CTAAGCCTCGGTGCAGAAAC 58.920 55.000 0.00 0.00 0.00 2.78
241 244 6.091441 GCACACACCTAAAAGATTCTCTACAG 59.909 42.308 0.00 0.00 0.00 2.74
243 246 5.351740 GGCACACACCTAAAAGATTCTCTAC 59.648 44.000 0.00 0.00 0.00 2.59
244 247 5.012664 TGGCACACACCTAAAAGATTCTCTA 59.987 40.000 0.00 0.00 0.00 2.43
315 324 8.287439 TGAAAGATACTTTGACAGACCAAAAA 57.713 30.769 1.41 0.00 35.83 1.94
373 382 0.179032 TGAGGAGCTCGTGGCAAAAA 60.179 50.000 14.78 0.00 44.79 1.94
396 405 6.998968 TGCAAAATTTCAAAGTGTTTGGAT 57.001 29.167 0.00 0.00 40.98 3.41
408 417 7.994425 TCTTCTAGGTACATGCAAAATTTCA 57.006 32.000 0.00 0.00 0.00 2.69
434 443 3.492656 CCTTCACCGTGAAAGTTGAGAGA 60.493 47.826 14.74 0.00 35.73 3.10
443 452 0.319555 CTCGCTCCTTCACCGTGAAA 60.320 55.000 14.74 0.81 35.73 2.69
447 456 4.070552 GGCTCGCTCCTTCACCGT 62.071 66.667 0.00 0.00 0.00 4.83
448 457 3.764466 AGGCTCGCTCCTTCACCG 61.764 66.667 0.00 0.00 30.82 4.94
455 464 0.383949 CTAGAAGTCAGGCTCGCTCC 59.616 60.000 0.00 0.00 0.00 4.70
465 474 1.847328 TCATCGCCACCTAGAAGTCA 58.153 50.000 0.00 0.00 0.00 3.41
472 481 7.506114 AGTTTTATATCTTTCATCGCCACCTA 58.494 34.615 0.00 0.00 0.00 3.08
517 527 2.038164 TGCTAGCCACCTCATCATGATC 59.962 50.000 13.29 0.00 0.00 2.92
529 539 3.793144 GCGTGCACTGCTAGCCAC 61.793 66.667 21.16 11.76 0.00 5.01
538 548 0.713883 CGAGTTAATTCGCGTGCACT 59.286 50.000 16.19 2.27 33.39 4.40
540 550 1.355796 CCCGAGTTAATTCGCGTGCA 61.356 55.000 14.31 0.00 39.19 4.57
547 557 0.931005 CAGCGAGCCCGAGTTAATTC 59.069 55.000 0.00 0.00 38.22 2.17
548 558 0.249398 ACAGCGAGCCCGAGTTAATT 59.751 50.000 0.00 0.00 38.22 1.40
571 581 3.118902 GCTGATGCAACAACTTGGGTTG 61.119 50.000 0.00 7.25 46.53 3.77
573 583 0.675633 GCTGATGCAACAACTTGGGT 59.324 50.000 0.00 0.00 39.41 4.51
574 584 0.037975 GGCTGATGCAACAACTTGGG 60.038 55.000 0.00 0.00 41.91 4.12
575 585 0.963962 AGGCTGATGCAACAACTTGG 59.036 50.000 0.00 0.00 41.91 3.61
576 586 1.610038 TCAGGCTGATGCAACAACTTG 59.390 47.619 14.43 3.49 41.91 3.16
577 587 1.985473 TCAGGCTGATGCAACAACTT 58.015 45.000 14.43 0.00 41.91 2.66
578 588 2.211250 ATCAGGCTGATGCAACAACT 57.789 45.000 28.33 2.13 41.91 3.16
579 589 5.696822 CATATATCAGGCTGATGCAACAAC 58.303 41.667 34.43 0.00 37.70 3.32
580 590 4.216902 GCATATATCAGGCTGATGCAACAA 59.783 41.667 34.43 17.58 41.98 2.83
581 591 3.754850 GCATATATCAGGCTGATGCAACA 59.245 43.478 34.43 18.28 41.98 3.33
582 592 4.008330 AGCATATATCAGGCTGATGCAAC 58.992 43.478 34.43 21.01 44.15 4.17
583 593 4.296621 AGCATATATCAGGCTGATGCAA 57.703 40.909 34.43 21.42 44.15 4.08
584 594 3.994931 AGCATATATCAGGCTGATGCA 57.005 42.857 34.43 23.38 44.15 3.96
585 595 5.021033 AGTAGCATATATCAGGCTGATGC 57.979 43.478 34.43 29.86 45.69 3.91
586 596 5.453057 GGGAGTAGCATATATCAGGCTGATG 60.453 48.000 34.43 22.71 45.69 3.07
587 597 4.653341 GGGAGTAGCATATATCAGGCTGAT 59.347 45.833 30.89 30.89 45.69 2.90
588 598 4.026744 GGGAGTAGCATATATCAGGCTGA 58.973 47.826 21.19 21.19 45.69 4.26
589 599 4.029520 AGGGAGTAGCATATATCAGGCTG 58.970 47.826 8.58 8.58 45.69 4.85
591 601 3.386402 GGAGGGAGTAGCATATATCAGGC 59.614 52.174 0.00 0.00 0.00 4.85
592 602 3.634448 CGGAGGGAGTAGCATATATCAGG 59.366 52.174 0.00 0.00 0.00 3.86
593 603 4.274147 ACGGAGGGAGTAGCATATATCAG 58.726 47.826 0.00 0.00 0.00 2.90
594 604 4.317530 ACGGAGGGAGTAGCATATATCA 57.682 45.455 0.00 0.00 0.00 2.15
595 605 6.377712 AGTTTACGGAGGGAGTAGCATATATC 59.622 42.308 0.00 0.00 0.00 1.63
598 608 4.481072 AGTTTACGGAGGGAGTAGCATAT 58.519 43.478 0.00 0.00 0.00 1.78
600 610 2.748388 AGTTTACGGAGGGAGTAGCAT 58.252 47.619 0.00 0.00 0.00 3.79
601 611 2.226962 AGTTTACGGAGGGAGTAGCA 57.773 50.000 0.00 0.00 0.00 3.49
602 612 4.933505 ATTAGTTTACGGAGGGAGTAGC 57.066 45.455 0.00 0.00 0.00 3.58
603 613 9.512588 TCTTATATTAGTTTACGGAGGGAGTAG 57.487 37.037 0.00 0.00 0.00 2.57
604 614 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
605 615 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
606 616 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
607 617 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
608 618 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
609 619 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
659 669 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
661 671 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
667 677 9.490083 ACTTGTACTCCCTCTGTAAACTAATAT 57.510 33.333 0.00 0.00 0.00 1.28
668 678 8.890410 ACTTGTACTCCCTCTGTAAACTAATA 57.110 34.615 0.00 0.00 0.00 0.98
669 679 7.793948 ACTTGTACTCCCTCTGTAAACTAAT 57.206 36.000 0.00 0.00 0.00 1.73
670 680 7.607615 AACTTGTACTCCCTCTGTAAACTAA 57.392 36.000 0.00 0.00 0.00 2.24
671 681 7.607615 AAACTTGTACTCCCTCTGTAAACTA 57.392 36.000 0.00 0.00 0.00 2.24
672 682 6.496144 AAACTTGTACTCCCTCTGTAAACT 57.504 37.500 0.00 0.00 0.00 2.66
673 683 6.541278 ACAAAACTTGTACTCCCTCTGTAAAC 59.459 38.462 0.00 0.00 43.27 2.01
674 684 6.655930 ACAAAACTTGTACTCCCTCTGTAAA 58.344 36.000 0.00 0.00 43.27 2.01
675 685 6.126997 TGACAAAACTTGTACTCCCTCTGTAA 60.127 38.462 0.00 0.00 45.52 2.41
676 686 5.364446 TGACAAAACTTGTACTCCCTCTGTA 59.636 40.000 0.00 0.00 45.52 2.74
679 689 5.367945 TTGACAAAACTTGTACTCCCTCT 57.632 39.130 0.00 0.00 45.52 3.69
701 711 1.271871 TGGTCGAAATGGGCACTTGAT 60.272 47.619 0.00 0.00 0.00 2.57
703 713 1.176527 ATGGTCGAAATGGGCACTTG 58.823 50.000 0.00 0.00 0.00 3.16
708 718 1.181786 TGGAAATGGTCGAAATGGGC 58.818 50.000 0.00 0.00 0.00 5.36
709 719 5.127031 ACTTAATGGAAATGGTCGAAATGGG 59.873 40.000 0.00 0.00 0.00 4.00
710 720 6.207691 ACTTAATGGAAATGGTCGAAATGG 57.792 37.500 0.00 0.00 0.00 3.16
711 721 9.632807 TTAAACTTAATGGAAATGGTCGAAATG 57.367 29.630 0.00 0.00 0.00 2.32
712 722 9.855021 CTTAAACTTAATGGAAATGGTCGAAAT 57.145 29.630 0.00 0.00 0.00 2.17
713 723 9.069082 TCTTAAACTTAATGGAAATGGTCGAAA 57.931 29.630 0.00 0.00 0.00 3.46
714 724 8.624367 TCTTAAACTTAATGGAAATGGTCGAA 57.376 30.769 0.00 0.00 0.00 3.71
715 725 8.624367 TTCTTAAACTTAATGGAAATGGTCGA 57.376 30.769 0.00 0.00 0.00 4.20
716 726 7.484959 GCTTCTTAAACTTAATGGAAATGGTCG 59.515 37.037 0.00 0.00 0.00 4.79
729 739 8.447833 CAATTACACCGATGCTTCTTAAACTTA 58.552 33.333 0.00 0.00 0.00 2.24
745 755 8.717821 TCATTAGAAAAAGAGTCAATTACACCG 58.282 33.333 0.00 0.00 0.00 4.94
860 870 5.008613 TGAATGGAAGAACTTCAGTTTTCCG 59.991 40.000 15.02 0.00 41.99 4.30
861 871 6.391227 TGAATGGAAGAACTTCAGTTTTCC 57.609 37.500 15.02 17.81 40.91 3.13
862 872 7.428826 ACATGAATGGAAGAACTTCAGTTTTC 58.571 34.615 15.02 11.53 41.20 2.29
903 913 4.561105 ACGCAAGACAAAACTTGGAAAAA 58.439 34.783 0.00 0.00 44.87 1.94
908 918 2.032799 TGCTACGCAAGACAAAACTTGG 59.967 45.455 0.00 0.00 44.87 3.61
924 937 6.902341 TGTCACTGATTCTTGAATTTGCTAC 58.098 36.000 0.00 0.00 0.00 3.58
954 967 6.323225 TCCCCCTAGTTTATAGACTTCTTTCG 59.677 42.308 0.62 0.00 0.00 3.46
1072 1086 2.395180 TAGGAGGGTGTGTGGCTGGA 62.395 60.000 0.00 0.00 0.00 3.86
1081 1099 2.683933 CCGCTGGTAGGAGGGTGT 60.684 66.667 0.00 0.00 0.00 4.16
1652 1702 2.980213 GAATCCGGGCGAAGAGGAGC 62.980 65.000 0.00 0.00 37.49 4.70
1655 1711 2.279517 CGAATCCGGGCGAAGAGG 60.280 66.667 0.00 0.00 0.00 3.69
1697 1760 5.337169 CGACTCCAAGAAGAAGAAATCCTCT 60.337 44.000 0.00 0.00 35.13 3.69
1889 2327 3.575247 ACCCCGGTGATGTTGGCA 61.575 61.111 0.00 0.00 0.00 4.92
1972 3534 0.883833 CAGTCCACAGCAAACATCCC 59.116 55.000 0.00 0.00 0.00 3.85
1989 3552 4.201792 GCTGCAAATCACAGATCAGTACAG 60.202 45.833 0.00 0.00 37.32 2.74
2058 3660 1.078848 CTTCACCTTCCCTGCCGAG 60.079 63.158 0.00 0.00 0.00 4.63
2083 3685 2.817396 GCCAGGCTCGCTCTTCAC 60.817 66.667 3.29 0.00 0.00 3.18
2084 3686 2.999648 AGCCAGGCTCGCTCTTCA 61.000 61.111 8.70 0.00 30.62 3.02
2085 3687 2.511145 CAGCCAGGCTCGCTCTTC 60.511 66.667 12.53 0.00 36.40 2.87
2086 3688 4.774503 GCAGCCAGGCTCGCTCTT 62.775 66.667 21.97 0.00 36.40 2.85
2218 3833 4.988598 CGTGGGCGGTGACTTGCT 62.989 66.667 0.95 0.00 0.00 3.91
2422 4111 2.096069 GCCATGTCAATCGATCAATCCG 60.096 50.000 0.00 0.00 0.00 4.18
2455 4148 4.374702 CGCCGTCTGTGCAAGTGC 62.375 66.667 0.00 0.00 42.50 4.40
2458 4151 2.551270 GTTCGCCGTCTGTGCAAG 59.449 61.111 0.00 0.00 0.00 4.01
2459 4152 3.334751 CGTTCGCCGTCTGTGCAA 61.335 61.111 0.00 0.00 0.00 4.08
2559 4255 0.037882 TCAGCTTTCTGTCCAGCTCG 60.038 55.000 0.00 0.00 44.91 5.03
2571 4267 4.329545 TCCCGCGCCTTCAGCTTT 62.330 61.111 0.00 0.00 40.39 3.51
2820 4559 1.734477 CACGTTCCTGTCCAGCTCG 60.734 63.158 0.00 0.00 0.00 5.03
3156 5067 0.179111 TTGCAGATGGATCGACCGAC 60.179 55.000 0.00 0.00 42.61 4.79
3157 5068 0.752658 ATTGCAGATGGATCGACCGA 59.247 50.000 0.00 0.00 42.61 4.69
3158 5069 1.586422 AATTGCAGATGGATCGACCG 58.414 50.000 0.00 0.00 42.61 4.79
3159 5070 4.391216 CAGATAATTGCAGATGGATCGACC 59.609 45.833 0.00 0.00 39.54 4.79
3204 5153 1.327507 GAATTGCGAAACGAAGGTGC 58.672 50.000 0.00 0.00 0.00 5.01
3217 5166 4.618489 CGAAAGAAGTTCCATGTGAATTGC 59.382 41.667 0.00 0.00 34.90 3.56
3239 5188 3.187022 TCTCTGATGCAACATTTCACACG 59.813 43.478 0.00 0.00 0.00 4.49
3311 5271 7.710676 TCTAGTCATAGATTAGATTGCCTCC 57.289 40.000 0.00 0.00 32.93 4.30
3343 5303 0.617413 CCCAGTTCAGATCACAGCCT 59.383 55.000 0.00 0.00 0.00 4.58
3344 5304 0.326264 ACCCAGTTCAGATCACAGCC 59.674 55.000 0.00 0.00 0.00 4.85
3364 5324 6.701400 GTCTAGAACATTGCCAAACAAAACAT 59.299 34.615 0.00 0.00 42.86 2.71
3390 5350 3.134458 CACGAAGCCTCTGAGAAACTTT 58.866 45.455 6.17 0.00 0.00 2.66
3405 5366 5.536554 AGTTGCAGAATAATCACACGAAG 57.463 39.130 0.00 0.00 0.00 3.79
3408 5369 6.738200 CAGTAAAGTTGCAGAATAATCACACG 59.262 38.462 0.00 0.00 0.00 4.49
3409 5370 7.023575 CCAGTAAAGTTGCAGAATAATCACAC 58.976 38.462 0.00 0.00 0.00 3.82
3410 5371 6.150976 CCCAGTAAAGTTGCAGAATAATCACA 59.849 38.462 0.00 0.00 0.00 3.58
3411 5372 6.555315 CCCAGTAAAGTTGCAGAATAATCAC 58.445 40.000 0.00 0.00 0.00 3.06
3412 5373 5.125417 GCCCAGTAAAGTTGCAGAATAATCA 59.875 40.000 0.00 0.00 0.00 2.57
3413 5374 5.125417 TGCCCAGTAAAGTTGCAGAATAATC 59.875 40.000 0.00 0.00 0.00 1.75
3414 5375 5.016173 TGCCCAGTAAAGTTGCAGAATAAT 58.984 37.500 0.00 0.00 0.00 1.28
3415 5376 4.402829 TGCCCAGTAAAGTTGCAGAATAA 58.597 39.130 0.00 0.00 0.00 1.40
3417 5378 2.875296 TGCCCAGTAAAGTTGCAGAAT 58.125 42.857 0.00 0.00 0.00 2.40
3418 5379 2.356665 TGCCCAGTAAAGTTGCAGAA 57.643 45.000 0.00 0.00 0.00 3.02
3420 5381 1.956477 AGTTGCCCAGTAAAGTTGCAG 59.044 47.619 0.00 0.00 32.88 4.41
3422 5383 1.069227 CGAGTTGCCCAGTAAAGTTGC 60.069 52.381 0.00 0.00 0.00 4.17
3424 5385 2.632987 ACGAGTTGCCCAGTAAAGTT 57.367 45.000 0.00 0.00 0.00 2.66
3425 5386 3.756933 TTACGAGTTGCCCAGTAAAGT 57.243 42.857 0.00 0.00 0.00 2.66
3426 5387 4.663636 CTTTACGAGTTGCCCAGTAAAG 57.336 45.455 11.03 11.03 44.95 1.85
3427 5388 4.339872 TCTTTACGAGTTGCCCAGTAAA 57.660 40.909 0.00 0.00 36.91 2.01
3428 5389 4.339872 TTCTTTACGAGTTGCCCAGTAA 57.660 40.909 0.00 0.00 0.00 2.24
3429 5390 4.339872 TTTCTTTACGAGTTGCCCAGTA 57.660 40.909 0.00 0.00 0.00 2.74
3431 5392 4.287720 GTTTTTCTTTACGAGTTGCCCAG 58.712 43.478 0.00 0.00 0.00 4.45
3432 5393 3.067040 GGTTTTTCTTTACGAGTTGCCCA 59.933 43.478 0.00 0.00 0.00 5.36
3433 5394 3.317149 AGGTTTTTCTTTACGAGTTGCCC 59.683 43.478 0.00 0.00 0.00 5.36
3434 5395 4.563337 AGGTTTTTCTTTACGAGTTGCC 57.437 40.909 0.00 0.00 0.00 4.52
3435 5396 6.139638 CGTTAAGGTTTTTCTTTACGAGTTGC 59.860 38.462 9.54 0.00 46.23 4.17
3436 5397 7.401080 TCGTTAAGGTTTTTCTTTACGAGTTG 58.599 34.615 12.59 0.00 46.55 3.16
3453 5438 3.118738 AGGCTATTGGTCTGTCGTTAAGG 60.119 47.826 0.00 0.00 0.00 2.69
3456 5441 2.167693 CCAGGCTATTGGTCTGTCGTTA 59.832 50.000 0.77 0.00 45.48 3.18
3470 5455 1.995626 GGGAGAGTTGCCCAGGCTA 60.996 63.158 10.58 0.00 45.31 3.93
3481 5466 4.102681 CGAATAGGTAAATTGGGGGAGAGT 59.897 45.833 0.00 0.00 0.00 3.24
3507 5492 6.374613 CAGAGTAGGTAAATTTGGGGAAAGTC 59.625 42.308 0.00 0.00 0.00 3.01
3550 5535 2.013400 TCAACACACGACAACAATGCT 58.987 42.857 0.00 0.00 0.00 3.79
3624 6099 1.156736 GTAGAACTGCACGCACCAAT 58.843 50.000 0.00 0.00 0.00 3.16
3653 6128 9.101325 CCCTCTCTAATCCTTTTACATGGTATA 57.899 37.037 0.00 0.00 0.00 1.47
3717 6192 5.987953 TCTTGTACTCTATACATACTCGCGT 59.012 40.000 5.77 0.00 0.00 6.01
3752 6227 9.730705 TCCATTATATCTCTAAAAGGCTTCATG 57.269 33.333 0.00 0.00 0.00 3.07
3773 6248 9.243105 CCGGGATTAGATACAATTATTTCCATT 57.757 33.333 0.00 0.00 0.00 3.16
3821 6296 8.224389 TCATTGATACTTCATACATTGTTGGG 57.776 34.615 0.00 0.00 0.00 4.12
3841 6316 8.344831 TGTGTTTACTTCATCAGTTTCTCATTG 58.655 33.333 0.00 0.00 36.88 2.82
3946 6457 7.278135 TGACCTATACGTCACTGACTTACTAT 58.722 38.462 7.58 0.78 37.85 2.12
3985 6498 0.940126 GTCGCTAACCTGCCATCATG 59.060 55.000 0.00 0.00 0.00 3.07
4066 6579 9.832445 TCTCTCCGTAAAGAAATATAAAAGCAT 57.168 29.630 0.00 0.00 0.00 3.79
4067 6580 9.314321 CTCTCTCCGTAAAGAAATATAAAAGCA 57.686 33.333 0.00 0.00 0.00 3.91
4068 6581 9.315525 ACTCTCTCCGTAAAGAAATATAAAAGC 57.684 33.333 0.00 0.00 0.00 3.51
4079 6592 6.829229 TTCAACATACTCTCTCCGTAAAGA 57.171 37.500 0.00 0.00 0.00 2.52
4087 6600 6.035112 GTGAATCGGTTTCAACATACTCTCTC 59.965 42.308 3.21 0.00 45.71 3.20
4089 6602 5.637810 TGTGAATCGGTTTCAACATACTCTC 59.362 40.000 3.21 0.00 45.71 3.20
4092 6605 5.049680 GTGTGTGAATCGGTTTCAACATACT 60.050 40.000 3.21 0.00 45.71 2.12
4093 6606 5.144359 GTGTGTGAATCGGTTTCAACATAC 58.856 41.667 3.21 8.46 45.71 2.39
4094 6607 4.816925 TGTGTGTGAATCGGTTTCAACATA 59.183 37.500 3.21 6.37 45.71 2.29
4095 6608 3.629855 TGTGTGTGAATCGGTTTCAACAT 59.370 39.130 3.21 0.00 45.71 2.71
4096 6609 3.010420 TGTGTGTGAATCGGTTTCAACA 58.990 40.909 3.21 7.54 45.71 3.33
4097 6610 3.684103 TGTGTGTGAATCGGTTTCAAC 57.316 42.857 3.21 5.51 45.71 3.18
4098 6611 4.336713 TCATTGTGTGTGAATCGGTTTCAA 59.663 37.500 3.21 0.00 45.71 2.69
4099 6612 3.879892 TCATTGTGTGTGAATCGGTTTCA 59.120 39.130 0.00 0.00 42.09 2.69
4100 6613 4.481930 TCATTGTGTGTGAATCGGTTTC 57.518 40.909 0.00 0.00 34.72 2.78
4101 6614 4.518590 TGATCATTGTGTGTGAATCGGTTT 59.481 37.500 0.00 0.00 0.00 3.27
4102 6615 4.071423 TGATCATTGTGTGTGAATCGGTT 58.929 39.130 0.00 0.00 0.00 4.44
4103 6616 3.673902 TGATCATTGTGTGTGAATCGGT 58.326 40.909 0.00 0.00 0.00 4.69
4104 6617 4.260907 GGATGATCATTGTGTGTGAATCGG 60.261 45.833 10.14 0.00 0.00 4.18
4105 6618 4.333372 TGGATGATCATTGTGTGTGAATCG 59.667 41.667 10.14 0.00 0.00 3.34
4106 6619 5.823209 TGGATGATCATTGTGTGTGAATC 57.177 39.130 10.14 0.00 0.00 2.52
4107 6620 6.350696 CCTTTGGATGATCATTGTGTGTGAAT 60.351 38.462 10.14 0.00 0.00 2.57
4108 6621 5.047872 CCTTTGGATGATCATTGTGTGTGAA 60.048 40.000 10.14 0.00 0.00 3.18
4190 6901 7.175467 TCACTCACAAGTCATGAGCAAAAATAT 59.825 33.333 0.00 0.00 46.33 1.28
4191 6902 6.486320 TCACTCACAAGTCATGAGCAAAAATA 59.514 34.615 0.00 0.00 46.33 1.40
4192 6903 5.300034 TCACTCACAAGTCATGAGCAAAAAT 59.700 36.000 0.00 0.00 46.33 1.82
4206 6917 5.924475 ATTAAGTTCGGTTCACTCACAAG 57.076 39.130 0.00 0.00 0.00 3.16
4209 6920 5.575995 GGACTATTAAGTTCGGTTCACTCAC 59.424 44.000 0.00 0.00 35.56 3.51
4231 6942 5.337250 CGGATCCATTTATTGGTCTATCGGA 60.337 44.000 13.41 0.00 46.52 4.55
4233 6944 5.479306 ACGGATCCATTTATTGGTCTATCG 58.521 41.667 13.41 0.00 46.52 2.92
4246 6957 7.427989 TCTACTAACCTTTAACGGATCCATT 57.572 36.000 13.41 5.19 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.