Multiple sequence alignment - TraesCS7B01G039600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G039600 chr7B 100.000 3865 0 0 1 3865 39546411 39550275 0.000000e+00 7138.0
1 TraesCS7B01G039600 chr7B 84.589 863 87 19 1309 2170 39917369 39918186 0.000000e+00 815.0
2 TraesCS7B01G039600 chr7B 79.084 1267 175 43 972 2210 39959123 39960327 0.000000e+00 789.0
3 TraesCS7B01G039600 chr7B 88.182 660 76 2 1059 1717 39383581 39382923 0.000000e+00 785.0
4 TraesCS7B01G039600 chr7B 82.054 964 117 28 2231 3176 39918178 39919103 0.000000e+00 771.0
5 TraesCS7B01G039600 chr7B 83.279 616 100 2 972 1587 40088913 40089525 7.250000e-157 564.0
6 TraesCS7B01G039600 chr7B 88.533 375 43 0 2491 2865 39981425 39981799 4.550000e-124 455.0
7 TraesCS7B01G039600 chr7B 94.118 153 5 1 402 554 312426721 312426573 3.000000e-56 230.0
8 TraesCS7B01G039600 chr7B 77.945 399 61 21 1835 2222 40081836 40082218 1.400000e-54 224.0
9 TraesCS7B01G039600 chr7B 93.464 153 6 1 402 554 373773540 373773392 1.400000e-54 224.0
10 TraesCS7B01G039600 chr7B 92.715 151 6 3 402 552 749669880 749669735 3.020000e-51 213.0
11 TraesCS7B01G039600 chr7B 83.333 204 19 5 1932 2135 39382830 39382642 1.430000e-39 174.0
12 TraesCS7B01G039600 chr7B 84.810 158 22 2 2450 2606 39548776 39548932 1.440000e-34 158.0
13 TraesCS7B01G039600 chr7B 84.810 158 22 2 2366 2522 39548860 39549016 1.440000e-34 158.0
14 TraesCS7B01G039600 chr7B 79.104 201 33 6 17 214 39916162 39916356 3.130000e-26 130.0
15 TraesCS7B01G039600 chr7B 73.684 304 54 23 2399 2683 39960528 39960824 1.140000e-15 95.3
16 TraesCS7B01G039600 chr7B 94.118 51 1 2 2937 2986 39981834 39981883 4.140000e-10 76.8
17 TraesCS7B01G039600 chr7D 90.308 1362 103 16 817 2173 88988181 88989518 0.000000e+00 1757.0
18 TraesCS7B01G039600 chr7D 92.254 710 34 8 3172 3863 88990407 88991113 0.000000e+00 987.0
19 TraesCS7B01G039600 chr7D 88.160 777 69 14 2403 3176 88989615 88990371 0.000000e+00 904.0
20 TraesCS7B01G039600 chr7D 80.989 1173 173 31 1059 2222 89079389 89080520 0.000000e+00 885.0
21 TraesCS7B01G039600 chr7D 84.887 794 97 14 1050 1842 89016996 89017767 0.000000e+00 780.0
22 TraesCS7B01G039600 chr7D 83.692 650 88 7 1059 1708 89108171 89108802 7.150000e-167 597.0
23 TraesCS7B01G039600 chr7D 82.677 635 104 5 972 1605 89227906 89228535 3.370000e-155 558.0
24 TraesCS7B01G039600 chr7D 81.947 493 61 13 2382 2870 89109456 89109924 3.620000e-105 392.0
25 TraesCS7B01G039600 chr7D 79.669 423 69 13 2222 2640 89109339 89109748 4.890000e-74 289.0
26 TraesCS7B01G039600 chr7D 82.692 312 40 13 2219 2528 88989516 88989815 8.230000e-67 265.0
27 TraesCS7B01G039600 chr7D 87.019 208 25 2 1 207 88985354 88985560 2.320000e-57 233.0
28 TraesCS7B01G039600 chr7D 83.884 242 39 0 2628 2869 89213433 89213674 8.350000e-57 231.0
29 TraesCS7B01G039600 chr7D 85.922 206 18 8 2366 2570 88989620 88989815 3.910000e-50 209.0
30 TraesCS7B01G039600 chr7D 97.368 114 2 1 440 552 563677253 563677140 3.940000e-45 193.0
31 TraesCS7B01G039600 chr7D 81.696 224 24 7 1835 2058 89108914 89109120 1.850000e-38 171.0
32 TraesCS7B01G039600 chr7D 82.843 204 20 5 1932 2135 89017771 89017959 6.640000e-38 169.0
33 TraesCS7B01G039600 chr7D 87.417 151 10 2 1859 2009 89233109 89233250 8.590000e-37 165.0
34 TraesCS7B01G039600 chr7D 86.806 144 12 6 2774 2912 89090800 89090941 1.860000e-33 154.0
35 TraesCS7B01G039600 chr7D 88.333 120 14 0 2448 2567 89018378 89018497 1.120000e-30 145.0
36 TraesCS7B01G039600 chr7D 83.735 166 12 5 1971 2130 89212810 89212966 4.030000e-30 143.0
37 TraesCS7B01G039600 chr7D 85.185 135 20 0 1882 2016 88899135 88899269 5.210000e-29 139.0
38 TraesCS7B01G039600 chr7D 91.358 81 7 0 2406 2486 88989735 88989815 1.140000e-20 111.0
39 TraesCS7B01G039600 chr7D 83.654 104 11 3 2462 2559 89234000 89234103 4.110000e-15 93.5
40 TraesCS7B01G039600 chr7D 84.615 78 10 2 2449 2526 89229412 89229487 4.140000e-10 76.8
41 TraesCS7B01G039600 chr7D 83.333 78 11 2 2366 2442 88989737 88989813 1.930000e-08 71.3
42 TraesCS7B01G039600 chr7D 89.796 49 2 3 3734 3779 207326574 207326622 4.170000e-05 60.2
43 TraesCS7B01G039600 chr7D 100.000 29 0 0 2102 2130 88899418 88899446 2.000000e-03 54.7
44 TraesCS7B01G039600 chr7A 87.015 670 84 3 1050 1717 90364317 90364985 0.000000e+00 752.0
45 TraesCS7B01G039600 chr7A 80.584 994 131 35 1059 2040 90443827 90444770 0.000000e+00 710.0
46 TraesCS7B01G039600 chr7A 82.118 850 110 14 1061 1904 90424207 90425020 0.000000e+00 689.0
47 TraesCS7B01G039600 chr7A 80.159 630 84 24 2367 2986 90445119 90445717 2.130000e-117 433.0
48 TraesCS7B01G039600 chr7A 86.647 337 44 1 2533 2869 90425513 90425848 4.720000e-99 372.0
49 TraesCS7B01G039600 chr7A 81.132 424 60 16 2222 2640 90445017 90445425 4.820000e-84 322.0
50 TraesCS7B01G039600 chr7A 84.810 158 18 4 1860 2016 90336451 90336603 1.860000e-33 154.0
51 TraesCS7B01G039600 chr7A 85.965 114 16 0 2457 2570 90365631 90365744 5.240000e-24 122.0
52 TraesCS7B01G039600 chr7A 82.927 123 21 0 2448 2570 90445275 90445397 1.140000e-20 111.0
53 TraesCS7B01G039600 chr7A 75.652 230 32 14 2404 2609 90377331 90377560 4.110000e-15 93.5
54 TraesCS7B01G039600 chr1B 94.156 154 5 1 402 555 531120075 531120224 8.350000e-57 231.0
55 TraesCS7B01G039600 chr1B 89.552 67 6 1 3111 3176 96484314 96484248 2.470000e-12 84.2
56 TraesCS7B01G039600 chr6B 92.949 156 7 1 399 554 802644 802795 1.400000e-54 224.0
57 TraesCS7B01G039600 chr5A 90.446 157 9 3 396 552 16844976 16845126 6.550000e-48 202.0
58 TraesCS7B01G039600 chr5A 88.000 150 12 3 403 552 560607022 560606879 5.130000e-39 172.0
59 TraesCS7B01G039600 chr1A 88.742 151 11 3 402 552 550618744 550618600 3.070000e-41 180.0
60 TraesCS7B01G039600 chr1A 85.542 83 9 3 3463 3544 465490065 465490145 2.470000e-12 84.2
61 TraesCS7B01G039600 chr3A 86.869 99 8 3 305 399 670835856 670835759 5.280000e-19 106.0
62 TraesCS7B01G039600 chr3A 90.909 55 4 1 293 346 670835475 670835529 5.360000e-09 73.1
63 TraesCS7B01G039600 chrUn 85.106 94 10 3 3453 3544 15473644 15473553 4.110000e-15 93.5
64 TraesCS7B01G039600 chr4A 88.710 62 6 1 305 366 520071785 520071725 1.490000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G039600 chr7B 39546411 39550275 3864 False 2484.666667 7138 89.873333 1 3865 3 chr7B.!!$F3 3864
1 TraesCS7B01G039600 chr7B 39916162 39919103 2941 False 572.000000 815 81.915667 17 3176 3 chr7B.!!$F4 3159
2 TraesCS7B01G039600 chr7B 40088913 40089525 612 False 564.000000 564 83.279000 972 1587 1 chr7B.!!$F2 615
3 TraesCS7B01G039600 chr7B 39382642 39383581 939 True 479.500000 785 85.757500 1059 2135 2 chr7B.!!$R4 1076
4 TraesCS7B01G039600 chr7B 39959123 39960824 1701 False 442.150000 789 76.384000 972 2683 2 chr7B.!!$F5 1711
5 TraesCS7B01G039600 chr7D 89079389 89080520 1131 False 885.000000 885 80.989000 1059 2222 1 chr7D.!!$F1 1163
6 TraesCS7B01G039600 chr7D 88985354 88991113 5759 False 567.162500 1757 87.630750 1 3863 8 chr7D.!!$F5 3862
7 TraesCS7B01G039600 chr7D 89016996 89018497 1501 False 364.666667 780 85.354333 1050 2567 3 chr7D.!!$F6 1517
8 TraesCS7B01G039600 chr7D 89108171 89109924 1753 False 362.250000 597 81.751000 1059 2870 4 chr7D.!!$F7 1811
9 TraesCS7B01G039600 chr7D 89227906 89234103 6197 False 223.325000 558 84.590750 972 2559 4 chr7D.!!$F9 1587
10 TraesCS7B01G039600 chr7A 90424207 90425848 1641 False 530.500000 689 84.382500 1061 2869 2 chr7A.!!$F4 1808
11 TraesCS7B01G039600 chr7A 90364317 90365744 1427 False 437.000000 752 86.490000 1050 2570 2 chr7A.!!$F3 1520
12 TraesCS7B01G039600 chr7A 90443827 90445717 1890 False 394.000000 710 81.200500 1059 2986 4 chr7A.!!$F5 1927

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 494 0.033796 CTCCACCTTGTCCCATGCAT 60.034 55.0 0.0 0.0 0.00 3.96 F
543 549 0.037326 CTGCACCCTGTCGTGTGTAT 60.037 55.0 0.0 0.0 36.08 2.29 F
1670 8827 0.038744 AAGCTGCTAAGTGCCCACAT 59.961 50.0 0.9 0.0 42.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2366 10129 0.390472 CTTTGGTCGTCTCCAGCTCC 60.390 60.000 0.00 0.00 38.80 4.70 R
2368 10131 1.004440 GCTTTGGTCGTCTCCAGCT 60.004 57.895 0.00 0.00 38.80 4.24 R
3030 11043 0.446222 ATCCGCGTGCAATGTTGTAC 59.554 50.000 4.92 4.19 39.89 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 6.757010 GTCACATATCACGGATTCACTAAACT 59.243 38.462 0.00 0.00 0.00 2.66
84 86 6.756542 TCACATATCACGGATTCACTAAACTG 59.243 38.462 0.00 0.00 0.00 3.16
86 88 7.064609 CACATATCACGGATTCACTAAACTGTT 59.935 37.037 0.00 0.00 0.00 3.16
96 98 0.163788 CTAAACTGTTGACTGCGCCG 59.836 55.000 4.18 0.00 0.00 6.46
97 99 0.249531 TAAACTGTTGACTGCGCCGA 60.250 50.000 4.18 0.00 0.00 5.54
123 125 6.582437 ACTAGTCGCAAATTTTGGTTTTTG 57.418 33.333 10.96 0.00 36.21 2.44
129 131 6.845782 GTCGCAAATTTTGGTTTTTGATTCTC 59.154 34.615 10.96 0.00 35.34 2.87
177 179 3.074390 AGGTGGAAGTTTCACATGGATGA 59.926 43.478 16.22 0.00 36.90 2.92
214 216 9.798994 GCATGTGATTAAGAAGAAAATGAAGAT 57.201 29.630 0.00 0.00 0.00 2.40
217 219 9.745018 TGTGATTAAGAAGAAAATGAAGATCCT 57.255 29.630 0.00 0.00 0.00 3.24
220 222 5.809719 AAGAAGAAAATGAAGATCCTCGC 57.190 39.130 0.00 0.00 0.00 5.03
221 223 4.836825 AGAAGAAAATGAAGATCCTCGCA 58.163 39.130 0.00 0.00 0.00 5.10
222 224 5.248640 AGAAGAAAATGAAGATCCTCGCAA 58.751 37.500 0.00 0.00 0.00 4.85
223 225 5.707298 AGAAGAAAATGAAGATCCTCGCAAA 59.293 36.000 0.00 0.00 0.00 3.68
224 226 5.964958 AGAAAATGAAGATCCTCGCAAAA 57.035 34.783 0.00 0.00 0.00 2.44
226 228 6.928520 AGAAAATGAAGATCCTCGCAAAAAT 58.071 32.000 0.00 0.00 0.00 1.82
228 230 8.689972 AGAAAATGAAGATCCTCGCAAAAATAT 58.310 29.630 0.00 0.00 0.00 1.28
229 231 9.950680 GAAAATGAAGATCCTCGCAAAAATATA 57.049 29.630 0.00 0.00 0.00 0.86
234 236 9.942850 TGAAGATCCTCGCAAAAATATATATGA 57.057 29.630 0.00 0.00 0.00 2.15
244 246 8.831372 CGCAAAAATATATATGAAGAAACGAGC 58.169 33.333 0.00 0.00 0.00 5.03
271 273 9.746457 AATAAGAAGCAAGTAAAGAGAGGAAAT 57.254 29.630 0.00 0.00 0.00 2.17
273 275 5.942826 AGAAGCAAGTAAAGAGAGGAAATGG 59.057 40.000 0.00 0.00 0.00 3.16
278 280 7.452813 AGCAAGTAAAGAGAGGAAATGGAAAAT 59.547 33.333 0.00 0.00 0.00 1.82
279 281 7.757173 GCAAGTAAAGAGAGGAAATGGAAAATC 59.243 37.037 0.00 0.00 0.00 2.17
290 292 6.779539 AGGAAATGGAAAATCAAAGTCTGTCT 59.220 34.615 0.00 0.00 0.00 3.41
291 293 7.040132 AGGAAATGGAAAATCAAAGTCTGTCTC 60.040 37.037 0.00 0.00 0.00 3.36
295 297 4.938226 GGAAAATCAAAGTCTGTCTCGGAT 59.062 41.667 0.00 0.00 0.00 4.18
312 314 3.022607 GGATACGGACTATTGAACCCG 57.977 52.381 0.00 0.00 46.65 5.28
313 315 2.624838 GGATACGGACTATTGAACCCGA 59.375 50.000 6.66 0.00 44.29 5.14
314 316 3.305199 GGATACGGACTATTGAACCCGAG 60.305 52.174 6.66 0.00 44.29 4.63
315 317 0.175073 ACGGACTATTGAACCCGAGC 59.825 55.000 6.66 0.00 44.29 5.03
337 340 1.741706 CACATGCTCCCTGATGAACAC 59.258 52.381 0.00 0.00 0.00 3.32
345 348 4.336713 GCTCCCTGATGAACACTAAAATCC 59.663 45.833 0.00 0.00 0.00 3.01
348 351 4.572389 CCCTGATGAACACTAAAATCCGAG 59.428 45.833 0.00 0.00 0.00 4.63
358 361 7.772332 ACACTAAAATCCGAGCAAATAGTAG 57.228 36.000 0.00 0.00 0.00 2.57
362 365 9.444600 ACTAAAATCCGAGCAAATAGTAGAAAA 57.555 29.630 0.00 0.00 0.00 2.29
366 369 7.721286 ATCCGAGCAAATAGTAGAAAATCTG 57.279 36.000 0.00 0.00 0.00 2.90
367 370 6.873997 TCCGAGCAAATAGTAGAAAATCTGA 58.126 36.000 0.00 0.00 0.00 3.27
368 371 7.500992 TCCGAGCAAATAGTAGAAAATCTGAT 58.499 34.615 0.00 0.00 0.00 2.90
369 372 7.987458 TCCGAGCAAATAGTAGAAAATCTGATT 59.013 33.333 0.00 0.00 0.00 2.57
401 407 8.915871 ATGATAAACATTGATGAAAGTTTCCG 57.084 30.769 13.01 0.00 35.45 4.30
402 408 8.105097 TGATAAACATTGATGAAAGTTTCCGA 57.895 30.769 13.01 0.00 35.90 4.55
403 409 8.572185 TGATAAACATTGATGAAAGTTTCCGAA 58.428 29.630 13.01 3.73 35.90 4.30
404 410 8.742554 ATAAACATTGATGAAAGTTTCCGAAC 57.257 30.769 13.01 3.00 35.90 3.95
406 412 7.504924 AACATTGATGAAAGTTTCCGAACTA 57.495 32.000 13.01 0.00 45.18 2.24
407 413 6.899114 ACATTGATGAAAGTTTCCGAACTAC 58.101 36.000 13.01 0.00 45.18 2.73
408 414 6.710744 ACATTGATGAAAGTTTCCGAACTACT 59.289 34.615 13.01 0.00 45.18 2.57
409 415 7.876068 ACATTGATGAAAGTTTCCGAACTACTA 59.124 33.333 13.01 0.00 45.18 1.82
410 416 8.883731 CATTGATGAAAGTTTCCGAACTACTAT 58.116 33.333 13.01 0.00 45.18 2.12
411 417 7.827819 TGATGAAAGTTTCCGAACTACTATG 57.172 36.000 13.01 0.00 45.18 2.23
412 418 6.312918 TGATGAAAGTTTCCGAACTACTATGC 59.687 38.462 13.01 0.00 45.18 3.14
413 419 5.543714 TGAAAGTTTCCGAACTACTATGCA 58.456 37.500 13.01 0.00 45.18 3.96
414 420 5.637810 TGAAAGTTTCCGAACTACTATGCAG 59.362 40.000 13.01 0.00 45.18 4.41
415 421 4.803098 AGTTTCCGAACTACTATGCAGT 57.197 40.909 0.00 0.00 44.13 4.40
416 422 4.745649 AGTTTCCGAACTACTATGCAGTC 58.254 43.478 0.00 0.00 44.13 3.51
417 423 3.416119 TTCCGAACTACTATGCAGTCG 57.584 47.619 0.00 0.00 36.14 4.18
418 424 2.635714 TCCGAACTACTATGCAGTCGA 58.364 47.619 0.00 0.00 36.14 4.20
419 425 3.211865 TCCGAACTACTATGCAGTCGAT 58.788 45.455 0.00 0.00 36.14 3.59
420 426 3.003378 TCCGAACTACTATGCAGTCGATG 59.997 47.826 0.00 0.00 36.14 3.84
438 444 3.786955 GCTCATTGCACGTACGATG 57.213 52.632 24.41 14.95 42.31 3.84
439 445 1.277326 GCTCATTGCACGTACGATGA 58.723 50.000 24.41 18.34 42.31 2.92
441 447 2.530177 CTCATTGCACGTACGATGAGT 58.470 47.619 27.79 8.38 46.78 3.41
442 448 2.258755 TCATTGCACGTACGATGAGTG 58.741 47.619 24.41 10.49 35.87 3.51
443 449 2.094957 TCATTGCACGTACGATGAGTGA 60.095 45.455 24.41 16.23 35.87 3.41
444 450 2.425578 TTGCACGTACGATGAGTGAA 57.574 45.000 24.41 0.00 38.06 3.18
445 451 1.693467 TGCACGTACGATGAGTGAAC 58.307 50.000 24.41 3.57 38.06 3.18
446 452 0.633733 GCACGTACGATGAGTGAACG 59.366 55.000 24.41 0.00 39.83 3.95
447 453 1.726892 GCACGTACGATGAGTGAACGA 60.727 52.381 24.41 0.00 37.07 3.85
448 454 2.782163 CACGTACGATGAGTGAACGAT 58.218 47.619 24.41 0.00 37.07 3.73
449 455 2.526289 CACGTACGATGAGTGAACGATG 59.474 50.000 24.41 0.30 37.07 3.84
450 456 1.513178 CGTACGATGAGTGAACGATGC 59.487 52.381 10.44 0.00 37.07 3.91
451 457 2.791503 CGTACGATGAGTGAACGATGCT 60.792 50.000 10.44 0.00 37.07 3.79
452 458 2.370281 ACGATGAGTGAACGATGCTT 57.630 45.000 0.00 0.00 0.00 3.91
453 459 1.995484 ACGATGAGTGAACGATGCTTG 59.005 47.619 0.00 0.00 0.00 4.01
454 460 1.325640 CGATGAGTGAACGATGCTTGG 59.674 52.381 0.00 0.00 0.00 3.61
455 461 2.621338 GATGAGTGAACGATGCTTGGA 58.379 47.619 0.00 0.00 0.00 3.53
456 462 2.768253 TGAGTGAACGATGCTTGGAT 57.232 45.000 0.00 0.00 0.00 3.41
457 463 2.621338 TGAGTGAACGATGCTTGGATC 58.379 47.619 0.00 0.00 0.00 3.36
458 464 1.936547 GAGTGAACGATGCTTGGATCC 59.063 52.381 4.20 4.20 0.00 3.36
459 465 1.278985 AGTGAACGATGCTTGGATCCA 59.721 47.619 11.44 11.44 0.00 3.41
460 466 1.667724 GTGAACGATGCTTGGATCCAG 59.332 52.381 15.53 10.43 0.00 3.86
461 467 0.659957 GAACGATGCTTGGATCCAGC 59.340 55.000 22.16 22.16 0.00 4.85
462 468 1.091771 AACGATGCTTGGATCCAGCG 61.092 55.000 22.87 19.57 45.30 5.18
463 469 2.249535 CGATGCTTGGATCCAGCGG 61.250 63.158 22.87 15.59 37.23 5.52
464 470 1.146930 GATGCTTGGATCCAGCGGA 59.853 57.895 22.87 16.87 35.55 5.54
465 471 0.250640 GATGCTTGGATCCAGCGGAT 60.251 55.000 22.87 19.90 46.28 4.18
466 472 0.536687 ATGCTTGGATCCAGCGGATG 60.537 55.000 22.87 10.44 43.27 3.51
478 484 3.197790 CGGATGCGCTCCACCTTG 61.198 66.667 20.87 5.42 45.24 3.61
479 485 2.045926 GGATGCGCTCCACCTTGT 60.046 61.111 17.62 0.00 44.26 3.16
480 486 2.109126 GGATGCGCTCCACCTTGTC 61.109 63.158 17.62 0.12 44.26 3.18
481 487 2.045926 ATGCGCTCCACCTTGTCC 60.046 61.111 9.73 0.00 0.00 4.02
482 488 3.628646 ATGCGCTCCACCTTGTCCC 62.629 63.158 9.73 0.00 0.00 4.46
483 489 4.329545 GCGCTCCACCTTGTCCCA 62.330 66.667 0.00 0.00 0.00 4.37
484 490 2.671070 CGCTCCACCTTGTCCCAT 59.329 61.111 0.00 0.00 0.00 4.00
485 491 1.746615 CGCTCCACCTTGTCCCATG 60.747 63.158 0.00 0.00 0.00 3.66
486 492 2.048603 GCTCCACCTTGTCCCATGC 61.049 63.158 0.00 0.00 0.00 4.06
487 493 1.379916 CTCCACCTTGTCCCATGCA 59.620 57.895 0.00 0.00 0.00 3.96
488 494 0.033796 CTCCACCTTGTCCCATGCAT 60.034 55.000 0.00 0.00 0.00 3.96
489 495 0.323633 TCCACCTTGTCCCATGCATG 60.324 55.000 20.19 20.19 0.00 4.06
490 496 1.514087 CACCTTGTCCCATGCATGC 59.486 57.895 21.69 11.82 0.00 4.06
491 497 1.077086 ACCTTGTCCCATGCATGCA 59.923 52.632 25.04 25.04 0.00 3.96
492 498 1.252904 ACCTTGTCCCATGCATGCAC 61.253 55.000 25.37 18.59 0.00 4.57
493 499 1.138036 CTTGTCCCATGCATGCACG 59.862 57.895 25.37 16.18 0.00 5.34
494 500 2.274232 CTTGTCCCATGCATGCACGG 62.274 60.000 25.69 25.69 0.00 4.94
495 501 2.751436 GTCCCATGCATGCACGGT 60.751 61.111 29.37 9.38 0.00 4.83
496 502 2.035469 TCCCATGCATGCACGGTT 59.965 55.556 29.37 8.98 0.00 4.44
497 503 2.182284 CCCATGCATGCACGGTTG 59.818 61.111 29.37 20.18 0.00 3.77
498 504 2.182284 CCATGCATGCACGGTTGG 59.818 61.111 24.44 22.31 0.00 3.77
499 505 2.341875 CCATGCATGCACGGTTGGA 61.342 57.895 26.98 2.36 0.00 3.53
500 506 1.669049 CCATGCATGCACGGTTGGAT 61.669 55.000 26.98 6.28 33.19 3.41
501 507 0.248743 CATGCATGCACGGTTGGATC 60.249 55.000 25.37 0.00 29.79 3.36
502 508 1.717791 ATGCATGCACGGTTGGATCG 61.718 55.000 25.37 0.00 29.79 3.69
503 509 2.106074 GCATGCACGGTTGGATCGA 61.106 57.895 14.21 0.00 29.79 3.59
504 510 1.439353 GCATGCACGGTTGGATCGAT 61.439 55.000 14.21 0.00 29.79 3.59
505 511 1.864565 CATGCACGGTTGGATCGATA 58.135 50.000 0.00 0.00 29.79 2.92
506 512 1.794701 CATGCACGGTTGGATCGATAG 59.205 52.381 0.00 0.00 29.79 2.08
507 513 0.104120 TGCACGGTTGGATCGATAGG 59.896 55.000 0.00 0.00 0.00 2.57
508 514 0.387929 GCACGGTTGGATCGATAGGA 59.612 55.000 0.00 0.00 0.00 2.94
509 515 1.000955 GCACGGTTGGATCGATAGGAT 59.999 52.381 0.00 0.00 38.35 3.24
523 529 2.953466 TAGGATCGTCCAAAGTTCGG 57.047 50.000 6.78 0.00 39.61 4.30
524 530 0.391263 AGGATCGTCCAAAGTTCGGC 60.391 55.000 6.78 0.00 39.61 5.54
525 531 0.391263 GGATCGTCCAAAGTTCGGCT 60.391 55.000 0.00 0.00 36.28 5.52
526 532 0.721718 GATCGTCCAAAGTTCGGCTG 59.278 55.000 0.00 0.00 0.00 4.85
527 533 1.298859 ATCGTCCAAAGTTCGGCTGC 61.299 55.000 0.00 0.00 0.00 5.25
528 534 2.250939 CGTCCAAAGTTCGGCTGCA 61.251 57.895 0.50 0.00 0.00 4.41
529 535 1.282875 GTCCAAAGTTCGGCTGCAC 59.717 57.895 0.50 0.00 0.00 4.57
530 536 1.896660 TCCAAAGTTCGGCTGCACC 60.897 57.895 0.50 0.00 0.00 5.01
531 537 2.644992 CAAAGTTCGGCTGCACCC 59.355 61.111 0.50 0.00 33.26 4.61
532 538 1.898574 CAAAGTTCGGCTGCACCCT 60.899 57.895 0.50 0.00 33.26 4.34
533 539 1.898574 AAAGTTCGGCTGCACCCTG 60.899 57.895 0.50 0.00 33.26 4.45
534 540 2.624674 AAAGTTCGGCTGCACCCTGT 62.625 55.000 0.50 0.00 33.26 4.00
535 541 3.050275 GTTCGGCTGCACCCTGTC 61.050 66.667 0.50 0.00 33.26 3.51
536 542 4.680237 TTCGGCTGCACCCTGTCG 62.680 66.667 0.50 0.00 39.05 4.35
539 545 4.626081 GGCTGCACCCTGTCGTGT 62.626 66.667 0.50 0.00 36.08 4.49
540 546 3.349006 GCTGCACCCTGTCGTGTG 61.349 66.667 0.00 0.00 36.08 3.82
541 547 2.108976 CTGCACCCTGTCGTGTGT 59.891 61.111 0.00 0.00 36.08 3.72
542 548 1.365999 CTGCACCCTGTCGTGTGTA 59.634 57.895 0.00 0.00 36.08 2.90
543 549 0.037326 CTGCACCCTGTCGTGTGTAT 60.037 55.000 0.00 0.00 36.08 2.29
544 550 1.203758 CTGCACCCTGTCGTGTGTATA 59.796 52.381 0.00 0.00 36.08 1.47
545 551 1.203758 TGCACCCTGTCGTGTGTATAG 59.796 52.381 0.00 0.00 36.08 1.31
546 552 1.922570 CACCCTGTCGTGTGTATAGC 58.077 55.000 0.00 0.00 0.00 2.97
547 553 1.203758 CACCCTGTCGTGTGTATAGCA 59.796 52.381 0.00 0.00 0.00 3.49
548 554 1.476891 ACCCTGTCGTGTGTATAGCAG 59.523 52.381 0.00 0.00 0.00 4.24
549 555 1.560923 CCTGTCGTGTGTATAGCAGC 58.439 55.000 0.00 0.00 0.00 5.25
550 556 1.191944 CTGTCGTGTGTATAGCAGCG 58.808 55.000 0.00 0.00 0.00 5.18
551 557 0.800683 TGTCGTGTGTATAGCAGCGC 60.801 55.000 0.00 0.00 0.00 5.92
552 558 1.226859 TCGTGTGTATAGCAGCGCC 60.227 57.895 2.29 0.00 0.00 6.53
553 559 2.576893 CGTGTGTATAGCAGCGCCG 61.577 63.158 2.29 0.00 0.00 6.46
554 560 1.518572 GTGTGTATAGCAGCGCCGT 60.519 57.895 2.29 0.00 0.00 5.68
555 561 1.518352 TGTGTATAGCAGCGCCGTG 60.518 57.895 2.29 0.00 0.00 4.94
556 562 1.226859 GTGTATAGCAGCGCCGTGA 60.227 57.895 2.29 0.00 0.00 4.35
557 563 0.804544 GTGTATAGCAGCGCCGTGAA 60.805 55.000 2.29 0.00 0.00 3.18
558 564 0.108567 TGTATAGCAGCGCCGTGAAA 60.109 50.000 2.29 0.00 0.00 2.69
559 565 0.577269 GTATAGCAGCGCCGTGAAAG 59.423 55.000 2.29 0.00 0.00 2.62
560 566 0.174845 TATAGCAGCGCCGTGAAAGT 59.825 50.000 2.29 0.00 0.00 2.66
561 567 0.673644 ATAGCAGCGCCGTGAAAGTT 60.674 50.000 2.29 0.00 0.00 2.66
562 568 0.882927 TAGCAGCGCCGTGAAAGTTT 60.883 50.000 2.29 0.00 0.00 2.66
563 569 1.299089 GCAGCGCCGTGAAAGTTTT 60.299 52.632 2.29 0.00 0.00 2.43
564 570 0.040781 GCAGCGCCGTGAAAGTTTTA 60.041 50.000 2.29 0.00 0.00 1.52
565 571 1.950472 CAGCGCCGTGAAAGTTTTAG 58.050 50.000 2.29 0.00 0.00 1.85
569 575 1.529438 CGCCGTGAAAGTTTTAGCTGA 59.471 47.619 0.00 0.00 0.00 4.26
592 598 7.631822 TGACTGCAAATTTTTGTGATGAAATG 58.368 30.769 5.05 0.00 40.24 2.32
595 601 9.491675 ACTGCAAATTTTTGTGATGAAATGATA 57.508 25.926 5.05 0.00 40.24 2.15
607 613 8.417884 TGTGATGAAATGATATTCGTGTAGGTA 58.582 33.333 0.00 0.00 31.80 3.08
614 620 6.904463 TGATATTCGTGTAGGTATAGGCAA 57.096 37.500 0.00 0.00 0.00 4.52
615 621 7.292713 TGATATTCGTGTAGGTATAGGCAAA 57.707 36.000 0.00 0.00 0.00 3.68
616 622 7.903145 TGATATTCGTGTAGGTATAGGCAAAT 58.097 34.615 0.00 0.00 0.00 2.32
617 623 7.817478 TGATATTCGTGTAGGTATAGGCAAATG 59.183 37.037 0.00 0.00 0.00 2.32
621 627 6.408035 TCGTGTAGGTATAGGCAAATGAAAA 58.592 36.000 0.00 0.00 0.00 2.29
657 664 7.103641 TGCTTCGAAAAGACTATATTGGAAGT 58.896 34.615 0.00 0.00 39.55 3.01
698 706 6.723298 TTGTTTTCATGTACAAACCTCCAT 57.277 33.333 0.00 0.00 32.76 3.41
702 710 5.957842 TTCATGTACAAACCTCCATGAAC 57.042 39.130 0.00 0.00 44.82 3.18
713 721 7.392113 ACAAACCTCCATGAACGTTATTTCATA 59.608 33.333 0.00 0.00 43.08 2.15
762 772 9.643693 AACTTTAATCAATGTTCATCACAATCC 57.356 29.630 0.00 0.00 39.50 3.01
768 778 8.712285 ATCAATGTTCATCACAATCCAAATTC 57.288 30.769 0.00 0.00 39.50 2.17
775 785 9.211485 GTTCATCACAATCCAAATTCAGATTTT 57.789 29.630 1.21 0.00 33.25 1.82
813 833 5.046304 ACTGTTTACTATGGAGCATGTGAGT 60.046 40.000 0.00 0.00 0.00 3.41
816 836 1.410517 ACTATGGAGCATGTGAGTCCG 59.589 52.381 0.00 0.00 32.51 4.79
817 837 0.752658 TATGGAGCATGTGAGTCCGG 59.247 55.000 0.00 0.00 32.51 5.14
818 838 0.977627 ATGGAGCATGTGAGTCCGGA 60.978 55.000 0.00 0.00 32.51 5.14
858 3075 3.673746 TTGTCTCACGCTTTCTTTGTG 57.326 42.857 0.00 0.00 34.96 3.33
902 3149 3.086282 GGCCGAAAGAATACAAAAGGGA 58.914 45.455 0.00 0.00 0.00 4.20
918 3165 1.215647 GGATCACTGCGGTTCGTCT 59.784 57.895 0.00 0.00 0.00 4.18
919 3166 1.078759 GGATCACTGCGGTTCGTCTG 61.079 60.000 0.00 0.00 0.00 3.51
927 3174 1.299850 CGGTTCGTCTGCACTGTGA 60.300 57.895 12.86 0.00 0.00 3.58
929 3176 0.582005 GGTTCGTCTGCACTGTGAAC 59.418 55.000 12.86 5.66 38.50 3.18
931 3178 1.258982 GTTCGTCTGCACTGTGAACTG 59.741 52.381 12.86 0.00 36.79 3.16
932 3179 0.875908 TCGTCTGCACTGTGAACTGC 60.876 55.000 12.86 0.00 0.00 4.40
933 3180 1.153597 CGTCTGCACTGTGAACTGCA 61.154 55.000 12.86 0.45 41.13 4.41
935 3182 4.146058 TGCACTGTGAACTGCAGG 57.854 55.556 19.93 0.72 38.49 4.85
936 3183 1.224315 TGCACTGTGAACTGCAGGT 59.776 52.632 19.93 12.79 38.49 4.00
937 3184 0.815213 TGCACTGTGAACTGCAGGTC 60.815 55.000 25.30 25.30 38.49 3.85
938 3185 0.815213 GCACTGTGAACTGCAGGTCA 60.815 55.000 30.44 30.44 38.22 4.02
941 3188 1.486310 ACTGTGAACTGCAGGTCAGAA 59.514 47.619 34.31 23.38 45.72 3.02
946 3196 0.109342 AACTGCAGGTCAGAACAGGG 59.891 55.000 19.93 0.00 45.72 4.45
950 3200 2.061220 CAGGTCAGAACAGGGCAGA 58.939 57.895 0.00 0.00 0.00 4.26
955 3205 1.123861 TCAGAACAGGGCAGAGCAGT 61.124 55.000 0.00 0.00 0.00 4.40
969 3219 1.216710 GCAGTGAAGGAGGAGACGG 59.783 63.158 0.00 0.00 0.00 4.79
970 3220 1.536943 GCAGTGAAGGAGGAGACGGT 61.537 60.000 0.00 0.00 0.00 4.83
1119 3390 3.680786 CAGGACGAGGTGGACGCA 61.681 66.667 0.00 0.00 0.00 5.24
1164 7826 2.101575 GATCAGTACACCGCGCGA 59.898 61.111 34.63 8.46 0.00 5.87
1218 7880 4.530857 CCGGGGTCCATCTGCGTC 62.531 72.222 0.00 0.00 0.00 5.19
1351 8501 3.943137 ATGGAGGGGTTCCTGGCGA 62.943 63.158 0.00 0.00 46.92 5.54
1461 8611 0.757935 GGTACTGTCTCGGGCCCATA 60.758 60.000 24.92 8.33 0.00 2.74
1474 8625 2.786495 CCCATACGCGACAGCTCCT 61.786 63.158 15.93 0.00 42.32 3.69
1531 8682 3.339713 AATCCATCATGGGCTGGAAAT 57.660 42.857 3.05 6.32 44.41 2.17
1610 8761 1.376037 CGTCCAAGGGCTCCTTCAC 60.376 63.158 3.71 3.85 42.67 3.18
1665 8822 0.606401 TGGTGAAGCTGCTAAGTGCC 60.606 55.000 0.90 2.25 42.00 5.01
1669 8826 0.606401 GAAGCTGCTAAGTGCCCACA 60.606 55.000 0.90 0.00 42.00 4.17
1670 8827 0.038744 AAGCTGCTAAGTGCCCACAT 59.961 50.000 0.90 0.00 42.00 3.21
1718 8977 4.015406 CCCTGCTACGTGCCCACA 62.015 66.667 0.00 0.00 42.00 4.17
1719 8978 2.031919 CCTGCTACGTGCCCACAA 59.968 61.111 0.00 0.00 42.00 3.33
1720 8979 2.325082 CCTGCTACGTGCCCACAAC 61.325 63.158 0.00 0.00 42.00 3.32
1721 8980 2.663520 TGCTACGTGCCCACAACG 60.664 61.111 0.00 0.00 42.00 4.10
1722 8981 4.084888 GCTACGTGCCCACAACGC 62.085 66.667 0.00 0.00 35.15 4.84
1723 8982 3.419759 CTACGTGCCCACAACGCC 61.420 66.667 0.00 0.00 0.00 5.68
1784 9055 1.813753 CCGCCGTGATAACCACAGG 60.814 63.158 0.00 0.00 45.98 4.00
1789 9060 1.202651 CCGTGATAACCACAGGATCCC 60.203 57.143 8.55 0.00 45.98 3.85
1791 9062 1.128200 TGATAACCACAGGATCCCCG 58.872 55.000 8.55 2.15 37.58 5.73
1793 9064 2.040009 ATAACCACAGGATCCCCGCG 62.040 60.000 8.55 0.00 37.58 6.46
1833 9119 3.365666 CGCCTTCTTCAACTCGTACTACA 60.366 47.826 0.00 0.00 0.00 2.74
1844 9130 4.279145 ACTCGTACTACATCCTGTTCCAT 58.721 43.478 0.00 0.00 0.00 3.41
1876 9173 4.559862 AGTTCTGAACATCGAAATCCCT 57.440 40.909 21.50 0.00 0.00 4.20
1877 9174 4.508662 AGTTCTGAACATCGAAATCCCTC 58.491 43.478 21.50 0.00 0.00 4.30
1878 9175 4.223923 AGTTCTGAACATCGAAATCCCTCT 59.776 41.667 21.50 0.00 0.00 3.69
1879 9176 4.128925 TCTGAACATCGAAATCCCTCTG 57.871 45.455 0.00 0.00 0.00 3.35
1880 9177 3.769300 TCTGAACATCGAAATCCCTCTGA 59.231 43.478 0.00 0.00 0.00 3.27
2205 9772 2.197643 GAACGAGCCTTCCGACGACT 62.198 60.000 0.00 0.00 0.00 4.18
2213 9780 1.066114 CTTCCGACGACTCAGCGTTC 61.066 60.000 0.00 0.00 45.72 3.95
2220 9932 4.379243 ACTCAGCGTTCCGGCAGG 62.379 66.667 0.00 0.00 39.46 4.85
2341 10104 4.475135 GGAGCGGGAGAAGGCCAC 62.475 72.222 5.01 0.00 0.00 5.01
2342 10105 3.706373 GAGCGGGAGAAGGCCACA 61.706 66.667 5.01 0.00 0.00 4.17
2343 10106 3.011517 AGCGGGAGAAGGCCACAT 61.012 61.111 5.01 0.00 0.00 3.21
2344 10107 2.514824 GCGGGAGAAGGCCACATC 60.515 66.667 5.01 0.00 0.00 3.06
2345 10108 3.036429 GCGGGAGAAGGCCACATCT 62.036 63.158 5.01 5.31 0.00 2.90
2346 10109 1.153289 CGGGAGAAGGCCACATCTG 60.153 63.158 5.01 0.00 0.00 2.90
2347 10110 1.617018 CGGGAGAAGGCCACATCTGA 61.617 60.000 5.01 0.00 0.00 3.27
2348 10111 0.179936 GGGAGAAGGCCACATCTGAG 59.820 60.000 5.01 0.00 0.00 3.35
2349 10112 0.463474 GGAGAAGGCCACATCTGAGC 60.463 60.000 5.01 0.00 0.00 4.26
2350 10113 0.540923 GAGAAGGCCACATCTGAGCT 59.459 55.000 5.01 0.00 0.00 4.09
2351 10114 0.540923 AGAAGGCCACATCTGAGCTC 59.459 55.000 6.82 6.82 0.00 4.09
2352 10115 0.809241 GAAGGCCACATCTGAGCTCG 60.809 60.000 5.01 4.19 0.00 5.03
2353 10116 2.866085 AAGGCCACATCTGAGCTCGC 62.866 60.000 5.01 4.02 0.00 5.03
2354 10117 2.894387 GCCACATCTGAGCTCGCC 60.894 66.667 9.64 0.00 0.00 5.54
2355 10118 2.584418 CCACATCTGAGCTCGCCG 60.584 66.667 9.64 0.00 0.00 6.46
2356 10119 3.260483 CACATCTGAGCTCGCCGC 61.260 66.667 9.64 0.00 39.57 6.53
2357 10120 4.862092 ACATCTGAGCTCGCCGCG 62.862 66.667 9.64 6.39 45.59 6.46
2374 10137 4.373116 GGTGCGAACGGAGCTGGA 62.373 66.667 10.26 0.00 35.28 3.86
2375 10138 2.811317 GTGCGAACGGAGCTGGAG 60.811 66.667 0.00 0.00 35.28 3.86
2376 10139 2.989253 TGCGAACGGAGCTGGAGA 60.989 61.111 0.00 0.00 35.28 3.71
2377 10140 2.507324 GCGAACGGAGCTGGAGAC 60.507 66.667 0.00 0.00 0.00 3.36
2378 10141 2.202492 CGAACGGAGCTGGAGACG 60.202 66.667 0.00 0.00 0.00 4.18
2379 10142 2.687805 CGAACGGAGCTGGAGACGA 61.688 63.158 0.00 0.00 0.00 4.20
2380 10143 1.153997 GAACGGAGCTGGAGACGAC 60.154 63.158 0.00 0.00 0.00 4.34
2381 10144 2.545165 GAACGGAGCTGGAGACGACC 62.545 65.000 0.00 0.00 0.00 4.79
2382 10145 3.062466 CGGAGCTGGAGACGACCA 61.062 66.667 0.00 0.00 38.33 4.02
2470 10458 3.119096 GGCGGTGAAGACGAAGGC 61.119 66.667 0.00 0.00 0.00 4.35
2471 10459 3.119096 GCGGTGAAGACGAAGGCC 61.119 66.667 0.00 0.00 0.00 5.19
2510 10498 1.662446 GGACGCGGTGAAGACGAAA 60.662 57.895 12.47 0.00 0.00 3.46
2511 10499 1.615107 GGACGCGGTGAAGACGAAAG 61.615 60.000 12.47 0.00 0.00 2.62
2594 10582 1.205893 GAGGAGGTGCTGAAGACGAAT 59.794 52.381 0.00 0.00 0.00 3.34
2768 10780 1.984570 AGCGGTTCAGCAGCTCCTA 60.985 57.895 0.00 0.00 45.26 2.94
2783 10795 1.532794 CCTAGCCTCCGAGGAGCAT 60.533 63.158 19.33 6.60 37.67 3.79
2876 10888 1.318158 CCGCCTGAGTACGGTACCTT 61.318 60.000 14.41 2.58 44.46 3.50
2877 10889 0.179145 CGCCTGAGTACGGTACCTTG 60.179 60.000 14.41 0.00 0.00 3.61
2879 10891 1.135170 GCCTGAGTACGGTACCTTGTC 60.135 57.143 14.41 6.51 0.00 3.18
2880 10892 1.131883 CCTGAGTACGGTACCTTGTCG 59.868 57.143 14.41 0.00 0.00 4.35
2881 10893 2.079158 CTGAGTACGGTACCTTGTCGA 58.921 52.381 14.41 0.00 0.00 4.20
2882 10894 2.681848 CTGAGTACGGTACCTTGTCGAT 59.318 50.000 14.41 0.00 0.00 3.59
2885 10897 1.105457 TACGGTACCTTGTCGATGGG 58.895 55.000 10.90 0.00 0.00 4.00
2986 10999 2.393646 GCTCTGTTCCTCTATCCTGGT 58.606 52.381 0.00 0.00 0.00 4.00
2987 11000 2.102252 GCTCTGTTCCTCTATCCTGGTG 59.898 54.545 0.00 0.00 0.00 4.17
2989 11002 4.026744 CTCTGTTCCTCTATCCTGGTGAA 58.973 47.826 0.00 0.00 0.00 3.18
2990 11003 4.026744 TCTGTTCCTCTATCCTGGTGAAG 58.973 47.826 0.00 0.00 0.00 3.02
2991 11004 3.772025 CTGTTCCTCTATCCTGGTGAAGT 59.228 47.826 0.00 0.00 0.00 3.01
2992 11005 3.515502 TGTTCCTCTATCCTGGTGAAGTG 59.484 47.826 0.00 0.00 0.00 3.16
2993 11006 2.752030 TCCTCTATCCTGGTGAAGTGG 58.248 52.381 0.00 1.07 0.00 4.00
2994 11007 2.044492 TCCTCTATCCTGGTGAAGTGGT 59.956 50.000 0.00 0.00 0.00 4.16
3027 11040 2.022240 TTTGGTTGCCGCAGTTTCCC 62.022 55.000 0.00 0.00 0.00 3.97
3030 11043 2.668212 TTGCCGCAGTTTCCCGAG 60.668 61.111 0.00 0.00 0.00 4.63
3057 11075 2.238942 TTGCACGCGGATTATCTGAT 57.761 45.000 12.47 0.00 0.00 2.90
3072 11090 6.884280 TTATCTGATCTCAAGCTCATACGA 57.116 37.500 0.00 0.00 0.00 3.43
3091 11109 4.900664 ACGAAGAACAGTAAAACCAAACG 58.099 39.130 0.00 0.00 0.00 3.60
3095 11113 6.689669 CGAAGAACAGTAAAACCAAACGAATT 59.310 34.615 0.00 0.00 0.00 2.17
3152 11170 6.304445 TCGCAAACATCGTCAAATATTTTGAC 59.696 34.615 18.60 18.60 43.85 3.18
3222 11294 8.419442 AGAAGCATTTTTGAGTCTTGATTTTCT 58.581 29.630 0.00 0.00 0.00 2.52
3226 11298 9.642312 GCATTTTTGAGTCTTGATTTTCTTTTC 57.358 29.630 0.00 0.00 0.00 2.29
3231 11303 9.520204 TTTGAGTCTTGATTTTCTTTTCATGAC 57.480 29.630 0.00 9.61 42.70 3.06
3249 11321 4.797693 TGACGAAACTTTGCGAACATTA 57.202 36.364 0.00 0.00 0.00 1.90
3291 11363 2.711922 CCGGCCTAACGTGAGCTCT 61.712 63.158 16.19 0.00 0.00 4.09
3334 11407 2.358322 ACATTGGACACGGGTTTTCT 57.642 45.000 0.00 0.00 0.00 2.52
3367 11440 0.109735 TACGAGCTCAGCGAACAGTG 60.110 55.000 15.40 0.00 0.00 3.66
3480 11554 3.007940 TGGAATGACATTCGTGGAAGACT 59.992 43.478 19.43 0.00 40.17 3.24
3481 11555 3.372206 GGAATGACATTCGTGGAAGACTG 59.628 47.826 19.43 0.00 40.17 3.51
3556 11632 8.347004 TGAGTATTGGTTTGCTTTTCATGATA 57.653 30.769 0.00 0.00 0.00 2.15
3624 11700 5.240891 CCTAATGTGAGTTTGAGCTGAGAA 58.759 41.667 0.00 0.00 0.00 2.87
3638 11714 2.032675 GCTGAGAAGGGCATTTTCGATC 59.967 50.000 0.00 0.00 0.00 3.69
3713 11789 3.084039 TCGGTGGATGTAGTTACTTCGT 58.916 45.455 0.00 0.00 32.83 3.85
3728 11805 6.534079 AGTTACTTCGTGATATTAAGCCACAC 59.466 38.462 0.00 0.00 0.00 3.82
3761 11838 5.831997 AGTTAACTAGCCAAAAAGCTTGTG 58.168 37.500 6.26 1.03 45.98 3.33
3771 11848 2.607631 AAAGCTTGTGCATTGCAACT 57.392 40.000 13.94 5.94 41.47 3.16
3772 11849 1.860676 AAGCTTGTGCATTGCAACTG 58.139 45.000 13.94 7.23 41.47 3.16
3775 11852 2.559668 AGCTTGTGCATTGCAACTGTAT 59.440 40.909 13.94 0.00 41.47 2.29
3834 11911 7.305648 GCTCAATAAATTGATTTGCTTCGCTAC 60.306 37.037 5.88 0.00 44.92 3.58
3863 11940 2.846206 ACTATGAATCTGGGTTGGCTGA 59.154 45.455 0.00 0.00 0.00 4.26
3864 11941 2.431954 ATGAATCTGGGTTGGCTGAG 57.568 50.000 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 9.620259 TGACATGGTTTGTATGCTTACAATATA 57.380 29.630 21.72 13.05 45.33 0.86
83 85 2.202946 TTGTCGGCGCAGTCAACA 60.203 55.556 15.05 6.31 0.00 3.33
84 86 0.942410 TAGTTGTCGGCGCAGTCAAC 60.942 55.000 31.15 31.15 0.00 3.18
86 88 1.080772 CTAGTTGTCGGCGCAGTCA 60.081 57.895 10.83 6.55 0.00 3.41
96 98 4.855531 ACCAAAATTTGCGACTAGTTGTC 58.144 39.130 11.83 5.00 42.06 3.18
97 99 4.911514 ACCAAAATTTGCGACTAGTTGT 57.088 36.364 11.83 0.00 0.00 3.32
110 112 7.116805 GCAGATCGAGAATCAAAAACCAAAATT 59.883 33.333 0.00 0.00 36.79 1.82
117 119 3.691609 AGGGCAGATCGAGAATCAAAAAC 59.308 43.478 0.00 0.00 36.79 2.43
123 125 5.652994 AATAGTAGGGCAGATCGAGAATC 57.347 43.478 0.00 0.00 34.30 2.52
129 131 7.819415 TCATATTTGAAATAGTAGGGCAGATCG 59.181 37.037 3.83 0.00 0.00 3.69
177 179 5.711506 TCTTAATCACATGCTTGGATTGTGT 59.288 36.000 18.32 3.94 41.14 3.72
215 217 9.318041 CGTTTCTTCATATATATTTTTGCGAGG 57.682 33.333 0.00 0.00 0.00 4.63
218 220 8.831372 GCTCGTTTCTTCATATATATTTTTGCG 58.169 33.333 0.00 0.00 0.00 4.85
228 230 8.765219 GCTTCTTATTGCTCGTTTCTTCATATA 58.235 33.333 0.00 0.00 0.00 0.86
229 231 7.280876 TGCTTCTTATTGCTCGTTTCTTCATAT 59.719 33.333 0.00 0.00 0.00 1.78
230 232 6.593770 TGCTTCTTATTGCTCGTTTCTTCATA 59.406 34.615 0.00 0.00 0.00 2.15
232 234 4.754618 TGCTTCTTATTGCTCGTTTCTTCA 59.245 37.500 0.00 0.00 0.00 3.02
234 236 5.239525 ACTTGCTTCTTATTGCTCGTTTCTT 59.760 36.000 0.00 0.00 0.00 2.52
236 238 5.035784 ACTTGCTTCTTATTGCTCGTTTC 57.964 39.130 0.00 0.00 0.00 2.78
237 239 6.554334 TTACTTGCTTCTTATTGCTCGTTT 57.446 33.333 0.00 0.00 0.00 3.60
238 240 6.426937 TCTTTACTTGCTTCTTATTGCTCGTT 59.573 34.615 0.00 0.00 0.00 3.85
239 241 5.932303 TCTTTACTTGCTTCTTATTGCTCGT 59.068 36.000 0.00 0.00 0.00 4.18
244 246 8.553459 TTCCTCTCTTTACTTGCTTCTTATTG 57.447 34.615 0.00 0.00 0.00 1.90
248 250 6.432472 CCATTTCCTCTCTTTACTTGCTTCTT 59.568 38.462 0.00 0.00 0.00 2.52
271 273 4.065088 CCGAGACAGACTTTGATTTTCCA 58.935 43.478 0.00 0.00 0.00 3.53
273 275 6.237595 CGTATCCGAGACAGACTTTGATTTTC 60.238 42.308 0.00 0.00 35.63 2.29
278 280 2.422479 CCGTATCCGAGACAGACTTTGA 59.578 50.000 0.00 0.00 35.63 2.69
279 281 2.422479 TCCGTATCCGAGACAGACTTTG 59.578 50.000 0.00 0.00 35.63 2.77
290 292 2.624838 GGGTTCAATAGTCCGTATCCGA 59.375 50.000 0.00 0.00 35.63 4.55
291 293 2.606308 CGGGTTCAATAGTCCGTATCCG 60.606 54.545 0.00 0.00 37.92 4.18
295 297 1.406539 GCTCGGGTTCAATAGTCCGTA 59.593 52.381 0.00 0.00 42.71 4.02
301 303 2.672961 TGTGAGCTCGGGTTCAATAG 57.327 50.000 2.36 0.00 34.62 1.73
306 308 1.078848 AGCATGTGAGCTCGGGTTC 60.079 57.895 9.64 0.00 42.18 3.62
307 309 3.072476 AGCATGTGAGCTCGGGTT 58.928 55.556 9.64 0.00 42.18 4.11
314 316 0.179702 TCATCAGGGAGCATGTGAGC 59.820 55.000 0.00 0.00 0.00 4.26
315 317 2.286872 GTTCATCAGGGAGCATGTGAG 58.713 52.381 0.00 0.00 0.00 3.51
399 405 3.300857 CATCGACTGCATAGTAGTTCGG 58.699 50.000 0.00 0.00 37.25 4.30
420 426 1.256376 CTCATCGTACGTGCAATGAGC 59.744 52.381 23.47 0.00 38.86 4.26
421 427 2.279921 CACTCATCGTACGTGCAATGAG 59.720 50.000 28.95 28.95 46.75 2.90
422 428 2.094957 TCACTCATCGTACGTGCAATGA 60.095 45.455 16.05 15.06 0.00 2.57
423 429 2.258755 TCACTCATCGTACGTGCAATG 58.741 47.619 16.05 11.48 0.00 2.82
424 430 2.647529 TCACTCATCGTACGTGCAAT 57.352 45.000 16.05 0.00 0.00 3.56
425 431 2.055838 GTTCACTCATCGTACGTGCAA 58.944 47.619 16.05 0.00 0.00 4.08
426 432 1.693467 GTTCACTCATCGTACGTGCA 58.307 50.000 16.05 0.00 0.00 4.57
427 433 0.633733 CGTTCACTCATCGTACGTGC 59.366 55.000 16.05 0.00 0.00 5.34
428 434 2.236741 TCGTTCACTCATCGTACGTG 57.763 50.000 16.05 12.72 31.33 4.49
429 435 2.782163 CATCGTTCACTCATCGTACGT 58.218 47.619 16.05 0.00 31.33 3.57
430 436 1.513178 GCATCGTTCACTCATCGTACG 59.487 52.381 9.53 9.53 0.00 3.67
431 437 2.798680 AGCATCGTTCACTCATCGTAC 58.201 47.619 0.00 0.00 0.00 3.67
432 438 3.179048 CAAGCATCGTTCACTCATCGTA 58.821 45.455 0.00 0.00 0.00 3.43
433 439 1.995484 CAAGCATCGTTCACTCATCGT 59.005 47.619 0.00 0.00 0.00 3.73
434 440 1.325640 CCAAGCATCGTTCACTCATCG 59.674 52.381 0.00 0.00 0.00 3.84
435 441 2.621338 TCCAAGCATCGTTCACTCATC 58.379 47.619 0.00 0.00 0.00 2.92
436 442 2.768253 TCCAAGCATCGTTCACTCAT 57.232 45.000 0.00 0.00 0.00 2.90
437 443 2.621338 GATCCAAGCATCGTTCACTCA 58.379 47.619 0.00 0.00 0.00 3.41
438 444 1.936547 GGATCCAAGCATCGTTCACTC 59.063 52.381 6.95 0.00 0.00 3.51
439 445 1.278985 TGGATCCAAGCATCGTTCACT 59.721 47.619 13.46 0.00 0.00 3.41
440 446 1.667724 CTGGATCCAAGCATCGTTCAC 59.332 52.381 17.00 0.00 0.00 3.18
441 447 2.013563 GCTGGATCCAAGCATCGTTCA 61.014 52.381 23.33 0.00 0.00 3.18
442 448 0.659957 GCTGGATCCAAGCATCGTTC 59.340 55.000 23.33 1.71 0.00 3.95
443 449 1.091771 CGCTGGATCCAAGCATCGTT 61.092 55.000 25.86 0.00 0.00 3.85
444 450 1.522355 CGCTGGATCCAAGCATCGT 60.522 57.895 25.86 0.00 0.00 3.73
445 451 2.249535 CCGCTGGATCCAAGCATCG 61.250 63.158 25.86 18.64 0.00 3.84
446 452 0.250640 ATCCGCTGGATCCAAGCATC 60.251 55.000 25.86 10.63 38.09 3.91
447 453 0.536687 CATCCGCTGGATCCAAGCAT 60.537 55.000 25.86 15.41 40.98 3.79
448 454 1.153107 CATCCGCTGGATCCAAGCA 60.153 57.895 25.86 14.22 40.98 3.91
449 455 2.550101 GCATCCGCTGGATCCAAGC 61.550 63.158 17.00 18.96 40.98 4.01
450 456 2.249535 CGCATCCGCTGGATCCAAG 61.250 63.158 17.00 12.61 40.98 3.61
451 457 2.203056 CGCATCCGCTGGATCCAA 60.203 61.111 17.00 0.17 40.98 3.53
463 469 2.109126 GGACAAGGTGGAGCGCATC 61.109 63.158 11.47 4.01 0.00 3.91
464 470 2.045926 GGACAAGGTGGAGCGCAT 60.046 61.111 11.47 0.00 0.00 4.73
465 471 4.329545 GGGACAAGGTGGAGCGCA 62.330 66.667 11.47 0.00 0.00 6.09
466 472 4.329545 TGGGACAAGGTGGAGCGC 62.330 66.667 0.00 0.00 31.92 5.92
477 483 2.751036 CCGTGCATGCATGGGACA 60.751 61.111 40.29 14.48 46.47 4.02
482 488 0.248743 GATCCAACCGTGCATGCATG 60.249 55.000 29.36 29.36 0.00 4.06
483 489 1.717791 CGATCCAACCGTGCATGCAT 61.718 55.000 25.64 4.77 0.00 3.96
484 490 2.397754 CGATCCAACCGTGCATGCA 61.398 57.895 18.46 18.46 0.00 3.96
485 491 1.439353 ATCGATCCAACCGTGCATGC 61.439 55.000 11.82 11.82 0.00 4.06
486 492 1.794701 CTATCGATCCAACCGTGCATG 59.205 52.381 0.00 0.00 0.00 4.06
487 493 1.270305 CCTATCGATCCAACCGTGCAT 60.270 52.381 0.00 0.00 0.00 3.96
488 494 0.104120 CCTATCGATCCAACCGTGCA 59.896 55.000 0.00 0.00 0.00 4.57
489 495 0.387929 TCCTATCGATCCAACCGTGC 59.612 55.000 0.00 0.00 0.00 5.34
490 496 2.947852 GATCCTATCGATCCAACCGTG 58.052 52.381 0.00 0.00 41.51 4.94
502 508 3.381949 CCGAACTTTGGACGATCCTATC 58.618 50.000 0.00 0.00 37.46 2.08
503 509 2.483188 GCCGAACTTTGGACGATCCTAT 60.483 50.000 0.00 0.00 37.46 2.57
504 510 1.134907 GCCGAACTTTGGACGATCCTA 60.135 52.381 0.00 0.00 37.46 2.94
505 511 0.391263 GCCGAACTTTGGACGATCCT 60.391 55.000 0.00 0.00 37.46 3.24
506 512 0.391263 AGCCGAACTTTGGACGATCC 60.391 55.000 0.00 0.00 36.96 3.36
507 513 0.721718 CAGCCGAACTTTGGACGATC 59.278 55.000 0.00 0.00 0.00 3.69
508 514 1.298859 GCAGCCGAACTTTGGACGAT 61.299 55.000 0.00 0.00 0.00 3.73
509 515 1.959226 GCAGCCGAACTTTGGACGA 60.959 57.895 0.00 0.00 0.00 4.20
510 516 2.250939 TGCAGCCGAACTTTGGACG 61.251 57.895 0.00 0.00 0.00 4.79
511 517 1.282875 GTGCAGCCGAACTTTGGAC 59.717 57.895 0.00 0.00 0.00 4.02
512 518 1.896660 GGTGCAGCCGAACTTTGGA 60.897 57.895 4.03 0.00 0.00 3.53
513 519 2.644992 GGTGCAGCCGAACTTTGG 59.355 61.111 4.03 0.00 0.00 3.28
514 520 1.898574 AGGGTGCAGCCGAACTTTG 60.899 57.895 28.24 0.00 38.44 2.77
515 521 1.898574 CAGGGTGCAGCCGAACTTT 60.899 57.895 28.24 7.85 38.44 2.66
516 522 2.281761 CAGGGTGCAGCCGAACTT 60.282 61.111 28.24 8.65 38.44 2.66
517 523 3.537206 GACAGGGTGCAGCCGAACT 62.537 63.158 28.24 12.39 38.44 3.01
518 524 3.050275 GACAGGGTGCAGCCGAAC 61.050 66.667 28.24 18.67 38.44 3.95
519 525 4.680237 CGACAGGGTGCAGCCGAA 62.680 66.667 28.24 0.00 38.44 4.30
522 528 4.626081 ACACGACAGGGTGCAGCC 62.626 66.667 27.66 27.66 41.65 4.85
523 529 3.349006 CACACGACAGGGTGCAGC 61.349 66.667 7.55 7.55 45.69 5.25
528 534 1.476891 CTGCTATACACACGACAGGGT 59.523 52.381 0.00 0.00 0.00 4.34
529 535 1.802880 GCTGCTATACACACGACAGGG 60.803 57.143 0.00 0.00 0.00 4.45
530 536 1.560923 GCTGCTATACACACGACAGG 58.439 55.000 0.00 0.00 0.00 4.00
531 537 1.191944 CGCTGCTATACACACGACAG 58.808 55.000 0.00 0.00 0.00 3.51
532 538 0.800683 GCGCTGCTATACACACGACA 60.801 55.000 0.00 0.00 0.00 4.35
533 539 1.480219 GGCGCTGCTATACACACGAC 61.480 60.000 7.64 0.00 0.00 4.34
534 540 1.226859 GGCGCTGCTATACACACGA 60.227 57.895 7.64 0.00 0.00 4.35
535 541 2.576893 CGGCGCTGCTATACACACG 61.577 63.158 7.64 0.00 0.00 4.49
536 542 1.518572 ACGGCGCTGCTATACACAC 60.519 57.895 18.15 0.00 0.00 3.82
537 543 1.518352 CACGGCGCTGCTATACACA 60.518 57.895 18.15 0.00 0.00 3.72
538 544 0.804544 TTCACGGCGCTGCTATACAC 60.805 55.000 18.15 0.00 0.00 2.90
539 545 0.108567 TTTCACGGCGCTGCTATACA 60.109 50.000 18.15 0.00 0.00 2.29
540 546 0.577269 CTTTCACGGCGCTGCTATAC 59.423 55.000 18.15 0.00 0.00 1.47
541 547 0.174845 ACTTTCACGGCGCTGCTATA 59.825 50.000 18.15 0.00 0.00 1.31
542 548 0.673644 AACTTTCACGGCGCTGCTAT 60.674 50.000 18.15 0.00 0.00 2.97
543 549 0.882927 AAACTTTCACGGCGCTGCTA 60.883 50.000 18.15 0.56 0.00 3.49
544 550 1.724582 AAAACTTTCACGGCGCTGCT 61.725 50.000 18.15 0.00 0.00 4.24
545 551 0.040781 TAAAACTTTCACGGCGCTGC 60.041 50.000 18.15 0.00 0.00 5.25
546 552 1.950472 CTAAAACTTTCACGGCGCTG 58.050 50.000 16.39 16.39 0.00 5.18
547 553 0.237498 GCTAAAACTTTCACGGCGCT 59.763 50.000 6.90 0.00 0.00 5.92
548 554 0.237498 AGCTAAAACTTTCACGGCGC 59.763 50.000 6.90 0.00 0.00 6.53
549 555 1.529438 TCAGCTAAAACTTTCACGGCG 59.471 47.619 4.80 4.80 0.00 6.46
550 556 2.548480 AGTCAGCTAAAACTTTCACGGC 59.452 45.455 0.00 0.00 0.00 5.68
551 557 3.607078 GCAGTCAGCTAAAACTTTCACGG 60.607 47.826 0.00 0.00 41.15 4.94
552 558 3.002246 TGCAGTCAGCTAAAACTTTCACG 59.998 43.478 0.00 0.00 45.94 4.35
553 559 4.552166 TGCAGTCAGCTAAAACTTTCAC 57.448 40.909 0.00 0.00 45.94 3.18
554 560 5.574891 TTTGCAGTCAGCTAAAACTTTCA 57.425 34.783 0.00 0.00 45.94 2.69
555 561 7.468922 AAATTTGCAGTCAGCTAAAACTTTC 57.531 32.000 0.00 0.00 45.94 2.62
556 562 7.848223 AAAATTTGCAGTCAGCTAAAACTTT 57.152 28.000 0.00 0.00 45.94 2.66
557 563 7.334171 ACAAAAATTTGCAGTCAGCTAAAACTT 59.666 29.630 5.82 0.00 45.94 2.66
558 564 6.818142 ACAAAAATTTGCAGTCAGCTAAAACT 59.182 30.769 5.82 0.00 45.94 2.66
559 565 6.901357 CACAAAAATTTGCAGTCAGCTAAAAC 59.099 34.615 5.82 0.00 45.94 2.43
560 566 6.815641 TCACAAAAATTTGCAGTCAGCTAAAA 59.184 30.769 5.82 0.00 45.94 1.52
561 567 6.336566 TCACAAAAATTTGCAGTCAGCTAAA 58.663 32.000 5.82 0.00 45.94 1.85
562 568 5.900425 TCACAAAAATTTGCAGTCAGCTAA 58.100 33.333 5.82 0.00 45.94 3.09
563 569 5.512753 TCACAAAAATTTGCAGTCAGCTA 57.487 34.783 5.82 0.00 45.94 3.32
564 570 4.389890 TCACAAAAATTTGCAGTCAGCT 57.610 36.364 5.82 0.00 45.94 4.24
565 571 4.746115 TCATCACAAAAATTTGCAGTCAGC 59.254 37.500 5.82 0.00 41.79 4.26
569 575 7.789273 TCATTTCATCACAAAAATTTGCAGT 57.211 28.000 5.82 0.00 41.79 4.40
592 598 8.033038 TCATTTGCCTATACCTACACGAATATC 58.967 37.037 0.00 0.00 0.00 1.63
595 601 6.169557 TCATTTGCCTATACCTACACGAAT 57.830 37.500 0.00 0.00 0.00 3.34
670 677 7.708752 GGAGGTTTGTACATGAAAACAAAATCA 59.291 33.333 19.66 4.04 44.64 2.57
677 684 6.325919 TCATGGAGGTTTGTACATGAAAAC 57.674 37.500 0.00 7.25 44.60 2.43
687 695 5.533154 TGAAATAACGTTCATGGAGGTTTGT 59.467 36.000 16.83 4.64 32.56 2.83
690 698 7.931578 TTATGAAATAACGTTCATGGAGGTT 57.068 32.000 15.97 15.97 45.62 3.50
782 802 9.378551 CATGCTCCATAGTAAACAGTAAAAGTA 57.621 33.333 0.00 0.00 0.00 2.24
784 804 8.177663 CACATGCTCCATAGTAAACAGTAAAAG 58.822 37.037 0.00 0.00 0.00 2.27
795 815 2.623416 CGGACTCACATGCTCCATAGTA 59.377 50.000 0.00 0.00 0.00 1.82
798 818 0.752658 CCGGACTCACATGCTCCATA 59.247 55.000 0.00 0.00 0.00 2.74
804 824 1.737838 TTTGATCCGGACTCACATGC 58.262 50.000 6.12 0.00 0.00 4.06
813 833 2.859165 AAGTGCTCTTTTGATCCGGA 57.141 45.000 6.61 6.61 0.00 5.14
816 836 2.814336 ACCGAAAGTGCTCTTTTGATCC 59.186 45.455 23.93 8.05 43.87 3.36
817 837 4.489679 AACCGAAAGTGCTCTTTTGATC 57.510 40.909 23.93 8.50 43.87 2.92
818 838 4.097892 ACAAACCGAAAGTGCTCTTTTGAT 59.902 37.500 23.93 9.42 43.87 2.57
884 3114 6.546395 CAGTGATCCCTTTTGTATTCTTTCG 58.454 40.000 0.00 0.00 0.00 3.46
891 3138 2.026262 ACCGCAGTGATCCCTTTTGTAT 60.026 45.455 0.00 0.00 0.00 2.29
902 3149 1.738099 GCAGACGAACCGCAGTGAT 60.738 57.895 0.00 0.00 0.00 3.06
924 3171 1.869767 CTGTTCTGACCTGCAGTTCAC 59.130 52.381 10.27 1.59 45.14 3.18
927 3174 0.109342 CCCTGTTCTGACCTGCAGTT 59.891 55.000 13.81 0.00 45.14 3.16
929 3176 1.673665 GCCCTGTTCTGACCTGCAG 60.674 63.158 6.78 6.78 46.31 4.41
931 3178 1.673665 CTGCCCTGTTCTGACCTGC 60.674 63.158 0.00 0.00 0.00 4.85
932 3179 0.036577 CTCTGCCCTGTTCTGACCTG 60.037 60.000 0.00 0.00 0.00 4.00
933 3180 1.835927 GCTCTGCCCTGTTCTGACCT 61.836 60.000 0.00 0.00 0.00 3.85
934 3181 1.376553 GCTCTGCCCTGTTCTGACC 60.377 63.158 0.00 0.00 0.00 4.02
935 3182 0.673022 CTGCTCTGCCCTGTTCTGAC 60.673 60.000 0.00 0.00 0.00 3.51
936 3183 1.123861 ACTGCTCTGCCCTGTTCTGA 61.124 55.000 0.00 0.00 0.00 3.27
937 3184 0.954449 CACTGCTCTGCCCTGTTCTG 60.954 60.000 0.00 0.00 0.00 3.02
938 3185 1.123861 TCACTGCTCTGCCCTGTTCT 61.124 55.000 0.00 0.00 0.00 3.01
939 3186 0.250467 TTCACTGCTCTGCCCTGTTC 60.250 55.000 0.00 0.00 0.00 3.18
941 3188 1.374190 CTTCACTGCTCTGCCCTGT 59.626 57.895 0.00 0.00 0.00 4.00
946 3196 0.108233 CTCCTCCTTCACTGCTCTGC 60.108 60.000 0.00 0.00 0.00 4.26
950 3200 1.254284 CCGTCTCCTCCTTCACTGCT 61.254 60.000 0.00 0.00 0.00 4.24
955 3205 2.283529 GGCACCGTCTCCTCCTTCA 61.284 63.158 0.00 0.00 0.00 3.02
1119 3390 1.080705 GCCGTACTTGTCGCAGAGT 60.081 57.895 0.00 0.00 36.95 3.24
1230 7892 4.020617 CGCAACCCTGCCTCCAGA 62.021 66.667 0.00 0.00 46.56 3.86
1531 8682 3.672808 ACGAGAGGAAGAAGAAGTCGTA 58.327 45.455 0.00 0.00 37.41 3.43
1669 8826 2.751436 ATCAACAGCGGCGCCAAT 60.751 55.556 30.40 11.52 0.00 3.16
1670 8827 3.430862 GATCAACAGCGGCGCCAA 61.431 61.111 30.40 10.09 0.00 4.52
1833 9119 6.215636 AACTTCAGTTACCTATGGAACAGGAT 59.784 38.462 0.00 0.00 38.11 3.24
1844 9130 6.208007 TCGATGTTCAGAACTTCAGTTACCTA 59.792 38.462 22.58 0.00 38.56 3.08
1876 9173 3.845992 TGAAACAGGGGAATCAGATCAGA 59.154 43.478 0.00 0.00 0.00 3.27
1877 9174 4.226427 TGAAACAGGGGAATCAGATCAG 57.774 45.455 0.00 0.00 0.00 2.90
1878 9175 4.684214 CGATGAAACAGGGGAATCAGATCA 60.684 45.833 0.00 0.00 0.00 2.92
1879 9176 3.812053 CGATGAAACAGGGGAATCAGATC 59.188 47.826 0.00 0.00 0.00 2.75
1880 9177 3.455910 TCGATGAAACAGGGGAATCAGAT 59.544 43.478 0.00 0.00 0.00 2.90
2100 9583 2.401699 CTGCTGGGGAAGTGCTGTGA 62.402 60.000 0.00 0.00 0.00 3.58
2211 9778 3.003173 CTCCTCCACCTGCCGGAA 61.003 66.667 5.05 0.00 30.33 4.30
2213 9780 3.003173 TTCTCCTCCACCTGCCGG 61.003 66.667 0.00 0.00 0.00 6.13
2220 9932 1.298014 CCACCAGCTTCTCCTCCAC 59.702 63.158 0.00 0.00 0.00 4.02
2357 10120 4.373116 TCCAGCTCCGTTCGCACC 62.373 66.667 0.00 0.00 0.00 5.01
2358 10121 2.811317 CTCCAGCTCCGTTCGCAC 60.811 66.667 0.00 0.00 0.00 5.34
2359 10122 2.989253 TCTCCAGCTCCGTTCGCA 60.989 61.111 0.00 0.00 0.00 5.10
2360 10123 2.507324 GTCTCCAGCTCCGTTCGC 60.507 66.667 0.00 0.00 0.00 4.70
2361 10124 2.202492 CGTCTCCAGCTCCGTTCG 60.202 66.667 0.00 0.00 0.00 3.95
2362 10125 1.153997 GTCGTCTCCAGCTCCGTTC 60.154 63.158 0.00 0.00 0.00 3.95
2363 10126 2.637383 GGTCGTCTCCAGCTCCGTT 61.637 63.158 0.00 0.00 0.00 4.44
2364 10127 3.063084 GGTCGTCTCCAGCTCCGT 61.063 66.667 0.00 0.00 0.00 4.69
2365 10128 2.154798 TTTGGTCGTCTCCAGCTCCG 62.155 60.000 0.00 0.00 38.80 4.63
2366 10129 0.390472 CTTTGGTCGTCTCCAGCTCC 60.390 60.000 0.00 0.00 38.80 4.70
2367 10130 1.016653 GCTTTGGTCGTCTCCAGCTC 61.017 60.000 0.00 0.00 38.80 4.09
2368 10131 1.004440 GCTTTGGTCGTCTCCAGCT 60.004 57.895 0.00 0.00 38.80 4.24
2369 10132 2.035442 GGCTTTGGTCGTCTCCAGC 61.035 63.158 0.00 0.00 38.80 4.85
2370 10133 1.738099 CGGCTTTGGTCGTCTCCAG 60.738 63.158 0.00 0.00 38.80 3.86
2371 10134 2.154798 CTCGGCTTTGGTCGTCTCCA 62.155 60.000 0.00 0.00 41.76 3.86
2372 10135 1.446272 CTCGGCTTTGGTCGTCTCC 60.446 63.158 0.00 0.00 41.76 3.71
2373 10136 2.095252 GCTCGGCTTTGGTCGTCTC 61.095 63.158 0.00 0.00 41.76 3.36
2374 10137 2.048127 GCTCGGCTTTGGTCGTCT 60.048 61.111 0.00 0.00 41.76 4.18
2375 10138 2.048127 AGCTCGGCTTTGGTCGTC 60.048 61.111 0.00 0.00 41.76 4.20
2376 10139 2.048127 GAGCTCGGCTTTGGTCGT 60.048 61.111 0.00 0.00 39.88 4.34
2377 10140 2.048222 TGAGCTCGGCTTTGGTCG 60.048 61.111 9.64 0.00 39.88 4.79
2378 10141 2.383527 CGTGAGCTCGGCTTTGGTC 61.384 63.158 9.64 0.00 39.88 4.02
2379 10142 2.357517 CGTGAGCTCGGCTTTGGT 60.358 61.111 9.64 0.00 39.88 3.67
2380 10143 3.121030 CCGTGAGCTCGGCTTTGG 61.121 66.667 9.64 0.35 43.96 3.28
2495 10483 2.470286 GCTTTCGTCTTCACCGCG 59.530 61.111 0.00 0.00 0.00 6.46
2497 10485 1.344942 CTCGGCTTTCGTCTTCACCG 61.345 60.000 0.00 0.00 41.92 4.94
2583 10571 0.459237 AGCTCGGCATTCGTCTTCAG 60.459 55.000 0.00 0.00 40.32 3.02
2610 10610 0.749454 GCCTCCATGGATCGCTTTGT 60.749 55.000 16.63 0.00 38.35 2.83
2623 10623 4.329545 GCACCAACTCCGCCTCCA 62.330 66.667 0.00 0.00 0.00 3.86
2678 10690 1.588597 CTTCGCCAGCTCAGTCTCA 59.411 57.895 0.00 0.00 0.00 3.27
2756 10768 1.760086 GGAGGCTAGGAGCTGCTGA 60.760 63.158 19.25 1.14 41.99 4.26
2768 10780 2.364842 ACATGCTCCTCGGAGGCT 60.365 61.111 19.48 1.04 42.19 4.58
2807 10819 1.227674 GCGCTTGTATCCCTCCAGG 60.228 63.158 0.00 0.00 0.00 4.45
2870 10882 3.057806 CCAAAAACCCATCGACAAGGTAC 60.058 47.826 3.46 0.00 32.21 3.34
2872 10884 1.960689 CCAAAAACCCATCGACAAGGT 59.039 47.619 0.00 0.00 34.60 3.50
2876 10888 4.946478 AAATTCCAAAAACCCATCGACA 57.054 36.364 0.00 0.00 0.00 4.35
2877 10889 7.569297 GTTTTAAATTCCAAAAACCCATCGAC 58.431 34.615 10.44 0.00 38.87 4.20
2916 10928 2.540265 ATGATCTCCAGCGATGAACC 57.460 50.000 0.06 0.00 0.00 3.62
2991 11004 3.221771 CCAAAAACAGAGTGGATCACCA 58.778 45.455 0.00 0.00 44.76 4.17
2992 11005 3.222603 ACCAAAAACAGAGTGGATCACC 58.777 45.455 0.00 0.00 36.23 4.02
2993 11006 4.610945 CAACCAAAAACAGAGTGGATCAC 58.389 43.478 0.00 0.00 36.23 3.06
2994 11007 3.068024 GCAACCAAAAACAGAGTGGATCA 59.932 43.478 0.00 0.00 36.23 2.92
3011 11024 4.038080 CGGGAAACTGCGGCAACC 62.038 66.667 3.44 5.45 0.00 3.77
3027 11040 0.516322 CGCGTGCAATGTTGTACTCG 60.516 55.000 10.83 10.83 43.17 4.18
3030 11043 0.446222 ATCCGCGTGCAATGTTGTAC 59.554 50.000 4.92 4.19 39.89 2.90
3057 11075 4.218635 ACTGTTCTTCGTATGAGCTTGAGA 59.781 41.667 0.00 0.00 0.00 3.27
3114 11132 7.081349 ACGATGTTTGCGAAAATAATTCAGAA 58.919 30.769 0.00 0.00 0.00 3.02
3152 11170 6.258230 TCCATGATGAAACTTTACAAGCAG 57.742 37.500 0.00 0.00 0.00 4.24
3197 11255 8.585189 AGAAAATCAAGACTCAAAAATGCTTC 57.415 30.769 0.00 0.00 0.00 3.86
3226 11298 2.980586 TGTTCGCAAAGTTTCGTCATG 58.019 42.857 7.14 0.00 0.00 3.07
3231 11303 5.679355 TGTTCTTAATGTTCGCAAAGTTTCG 59.321 36.000 0.00 0.00 0.00 3.46
3249 11321 7.148407 CGGTATGCAGACTTTTAGAATGTTCTT 60.148 37.037 11.87 0.00 38.70 2.52
3308 11381 4.513198 ACCCGTGTCCAATGTTATTTTG 57.487 40.909 0.00 0.00 0.00 2.44
3324 11397 1.884235 CTTGAGCTCAGAAAACCCGT 58.116 50.000 17.43 0.00 0.00 5.28
3480 11554 3.304257 CATCGATTTGGTTTTGTTCGCA 58.696 40.909 0.00 0.00 0.00 5.10
3481 11555 2.090503 GCATCGATTTGGTTTTGTTCGC 59.909 45.455 0.00 0.00 0.00 4.70
3540 11616 9.448294 TGCAAAATTTTATCATGAAAAGCAAAC 57.552 25.926 2.44 0.00 32.06 2.93
3556 11632 8.705048 AATGTTTTGAATGCTTGCAAAATTTT 57.295 23.077 18.57 13.15 43.37 1.82
3596 11672 0.451783 CAAACTCACATTAGGCCGGC 59.548 55.000 21.18 21.18 0.00 6.13
3624 11700 0.451783 GTTGCGATCGAAAATGCCCT 59.548 50.000 21.57 0.00 0.00 5.19
3638 11714 0.578211 ACGAAGTAACGGTTGTTGCG 59.422 50.000 3.07 4.60 44.35 4.85
3713 11789 7.658525 AAAATCATGGTGTGGCTTAATATCA 57.341 32.000 0.00 0.00 0.00 2.15
3728 11805 9.921637 TTTTTGGCTAGTTAACTAAAATCATGG 57.078 29.630 15.95 3.76 0.00 3.66
3834 11911 2.874701 CCCAGATTCATAGTTTGCTCCG 59.125 50.000 0.00 0.00 0.00 4.63
3839 11916 4.019174 AGCCAACCCAGATTCATAGTTTG 58.981 43.478 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.